RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1887
(653 letters)
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 167 bits (426), Expect = 4e-45
Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 13/217 (5%)
Query: 378 NKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIP 437
+ LD E A + + + + + + D NDN P FT ++ +
Sbjct: 69 TRPLDREEYDKYVLSSHA----VSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVR 124
Query: 438 ENATAGEKVVQVKATDVDTNLGG---EILYTAILGYKNSSL----ELDAHTGDITIANGQ 490
E G +V+ V ATD D N+ + Y+ + + ++ TG I++ G
Sbjct: 125 EGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI-GT 183
Query: 491 QFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNF 550
DRE+ EY V+A D++G GL + I D NDNAPIF + ++ +
Sbjct: 184 GLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIG- 242
Query: 551 SERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHP 587
E + TD D I N F++
Sbjct: 243 FEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 279
Score = 164 bits (416), Expect = 1e-43
Identities = 68/322 (21%), Positives = 101/322 (31%), Gaps = 32/322 (9%)
Query: 279 KDLNEPSPQSSTATIAL-VFDQAINT-PPYFDTVQYITHLDENSPQGTALIFAESFHTQV 336
DL S + + D N P FD Y + EN V
Sbjct: 200 TDLEGA-GLSVEGKAIIQITD--ANDNAPIFDPKTYTALVPENEIGFEVQRL------SV 250
Query: 337 TD-DNMGKNG--IFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVI 393
TD D G N G F I Q + K LD+E + I
Sbjct: 251 TDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESN--QGILTT--AKGLDFELRKQYVLQI 306
Query: 394 VAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATD 453
+ S L +S A V V + DVN+ P F + + E+ + GEK++ + A D
Sbjct: 307 TVENAEPFSVP-LPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQD 364
Query: 454 VDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEA----SEYKFQVEARDM 509
D ++ Y I L ++ G +T DRE + Y + D
Sbjct: 365 PDKQQIQKLSYF-IGNDPARWLTVNKDNGIVTGN--GNLDRESEYVKNNTYTVIMLVTDD 421
Query: 510 QGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNI 569
L L +LDVNDN P+ F + + +D D
Sbjct: 422 GVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPE-----PQVLTISDADIPPNTYP 476
Query: 570 VRYEIISGNYDNKFSLHPETGV 591
+ + G+ + G
Sbjct: 477 YKVSLSHGSDLTWKAELDSKGT 498
Score = 142 bits (360), Expect = 3e-36
Identities = 68/333 (20%), Positives = 116/333 (34%), Gaps = 48/333 (14%)
Query: 280 DLNEPSPQSSTATIAL-VFDQAIN-TPPYFDTVQYITHLDENSPQGTALIFAESFHTQVT 337
N P I + V D N P F + + E GT ++ V+
Sbjct: 88 SENGS-PVEEPMEITINVID--QNDNRPKFTQDVFRGSVREGVQPGTQVM-------AVS 137
Query: 338 -----DDNMGKNG--IFSLT----LENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERT 386
D+ NG +S+ E F I I + LD E+
Sbjct: 138 ATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGV------ISLI-GTGLDREKF 190
Query: 387 RTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKV 446
+ + A D LS + ++ I D NDN P+F YTA +PEN G +V
Sbjct: 191 PEYTLTVQAT----DLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGFEV 245
Query: 447 VQVKATDVDT-NLGGEILYTAILGYKNS--SLELDAHT--GDITIANGQQFDREEASEYK 501
++ TD+D I + ++ D + G +T A + D E +Y
Sbjct: 246 QRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTA--KGLDFELRKQYV 303
Query: 502 FQVEARDMQGLG---LRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKA 558
Q+ + + + + +T+ DVN+ P FV ++ D + + A
Sbjct: 304 LQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVA 362
Query: 559 TDQDAEAPNNIVRYEIISGNYDNKFSLHPETGV 591
D D + Y I + +++ + G+
Sbjct: 363 QDPDK-QQIQKLSYFIGNDP-ARWLTVNKDNGI 393
Score = 110 bits (277), Expect = 1e-25
Identities = 43/262 (16%), Positives = 88/262 (33%), Gaps = 43/262 (16%)
Query: 284 PSPQSSTATIAL-VFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMG 342
+STAT+ + V D +N P+F + E+ +G + D +
Sbjct: 316 VPLPTSTATVTVTVED--VNEAPFFVPAVSRVDVSEDLSRGEKI-----ISLVAQDPDKQ 368
Query: 343 KNGIFSLTLENNNGTFEIWPSVVERKAQFTI-----RVRNNKNLDYE----RTRTLSFVI 393
+ S + N+ + T+ V N NLD E + T + ++
Sbjct: 369 QIQKLSYFIGNDPARW------------LTVNKDNGIVTGNGNLDRESEYVKNNTYTVIM 416
Query: 394 VAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATD 453
+ +D ++ + +++++ DVNDN PV + ++T + + +D
Sbjct: 417 LV----TDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNP-----EPQVLTISD 467
Query: 454 VDTNLGGEILYTAILGYKNSSLEL-DAHTGDITIANGQQFDREEASEYKFQVEARDMQGL 512
D ++ + + + G + + + +Y V D Q
Sbjct: 468 ADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLL--SPTQQLKKGDYSIYVLLSDAQNN 525
Query: 513 GLRTVVPLQLTILDVNDNAPIF 534
TVV T+ A
Sbjct: 526 PQLTVV--NATVCSCEGKAIKC 545
Score = 100 bits (250), Expect = 3e-22
Identities = 36/177 (20%), Positives = 71/177 (40%), Gaps = 15/177 (8%)
Query: 425 PVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYT----AILGYKNSSLELDAH 480
+ E +++VQ+K+ + D ++ Y+ ++
Sbjct: 6 HDWVIPPIKVSENERGPFPKRLVQIKS-NKDRF--NKVYYSITGQGADNPPQGVFRIEWE 62
Query: 481 TGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFE 540
TG + + + DREE +Y A G + + + + ++D NDN P F Q F
Sbjct: 63 TGWMLVT--RPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFR 120
Query: 541 FVLASDSRNFSERTFIKATDQDAEA--PNNIVRYEIISGN----YDNKFSLHPETGV 591
+ + ++ + ATD+D N ++ Y I+ + N F+++ ETGV
Sbjct: 121 GSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGV 177
Score = 39.6 bits (93), Expect = 0.003
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 11 VVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHP 70
V V V+DV + P F+ + ++ +L+ + + + A D DK + + Y G+
Sbjct: 325 VTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY---FIGND 380
Query: 71 MTVFFTINELTG 82
+ T+N+ G
Sbjct: 381 PARWLTVNKDNG 392
Score = 36.9 bits (86), Expect = 0.019
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 10 EVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHP---RTIKYGLVS 66
E+ + V D D P F + + + ++A D D + Y ++
Sbjct: 99 EITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILK 158
Query: 67 --EGHPMTVFFTINELTG 82
P+ FTIN TG
Sbjct: 159 QDPEEPIPNLFTINRETG 176
Score = 30.7 bits (70), Expect = 1.8
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 45 TKITAIDGDKGHPRTIKYGLVSEG--HPMTVFFTINELTG 82
++ I +K + Y + +G +P F I TG
Sbjct: 25 KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETG 64
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 169 bits (430), Expect = 2e-44
Identities = 69/361 (19%), Positives = 119/361 (32%), Gaps = 37/361 (10%)
Query: 244 MYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINT 303
+ + R ++L K + + + + K S ++ V
Sbjct: 88 VLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETH 147
Query: 304 PP----YFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGI--FSLTLENN--- 354
D V + EN + N + +S+T +
Sbjct: 148 TGLKRKKRDWVIPPIKVSENERGPFPKRLVQ------IKSNKDRFNKVYYSITGQGADNP 201
Query: 355 -NGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPV 413
G F I T + + LD E A + + + +
Sbjct: 202 PQGVFRI--------EWETGWMLVTRPLDREEYDKYVLSSHA----VSENGSPVEEPMEI 249
Query: 414 LVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGG---EILYTAILGY 470
+ + D NDN P FT ++ + E G +V+ V ATD D N+ + Y+ +
Sbjct: 250 TINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQD 309
Query: 471 KNSSL----ELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526
+ ++ TG I++ G DRE+ EY V+A D++G GL + I D
Sbjct: 310 PEEPIPNLFTINRETGVISLI-GTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 368
Query: 527 VNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLH 586
NDNAPIF + ++ + E + TD D I N F++
Sbjct: 369 ANDNAPIFDPKTYTALVPENEIG-FEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNIT 427
Query: 587 P 587
Sbjct: 428 T 428
Score = 164 bits (416), Expect = 1e-42
Identities = 68/322 (21%), Positives = 101/322 (31%), Gaps = 32/322 (9%)
Query: 279 KDLNEPSPQSSTATIAL-VFDQAINT-PPYFDTVQYITHLDENSPQGTALIFAESFHTQV 336
DL S + + D N P FD Y + EN V
Sbjct: 349 TDLEGA-GLSVEGKAIIQITD--ANDNAPIFDPKTYTALVPENEIGFEVQRL------SV 399
Query: 337 TD-DNMGKNG--IFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVI 393
TD D G N G F I Q + K LD+E + I
Sbjct: 400 TDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESN--QGILTTA--KGLDFELRKQYVLQI 455
Query: 394 VAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATD 453
+ S L +S A V V + DVN+ P F + + E+ + GEK++ + A D
Sbjct: 456 TVENAEPFSVP-LPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQD 513
Query: 454 VDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEA----SEYKFQVEARDM 509
D ++ Y I L ++ G +T DRE + Y + D
Sbjct: 514 PDKQQIQKLSYF-IGNDPARWLTVNKDNGIVTGN--GNLDRESEYVKNNTYTVIMLVTDD 570
Query: 510 QGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNI 569
L L +LDVNDN P+ F + + +D D
Sbjct: 571 GVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPE-----PQVLTISDADIPPNTYP 625
Query: 570 VRYEIISGNYDNKFSLHPETGV 591
+ + G+ + G
Sbjct: 626 YKVSLSHGSDLTWKAELDSKGT 647
Score = 118 bits (298), Expect = 6e-28
Identities = 51/331 (15%), Positives = 115/331 (34%), Gaps = 42/331 (12%)
Query: 285 SPQSSTATIALVFDQAINT-PPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGK 343
+ + ++ P F + +YI ++ + + +F +D K
Sbjct: 14 CGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNF----SDCTTRK 69
Query: 344 NGIFSLT-----LENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEI 398
+G++ + + + + + +FTI + + + +K
Sbjct: 70 HGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTW----DARGIKHSTNIAVASKRH 125
Query: 399 SSDSSSNLLSSQAPVLVYINDVNDNPPVFT-------ATLYTAKIPENATAGEKVVQVKA 451
S ++ + + + E +++VQ+K+
Sbjct: 126 RSGEEAH----SRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKS 181
Query: 452 TDVDTNLGGEILYTAILG-----YKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEA 506
+ D ++ Y+ I G ++ TG + + + DREE +Y A
Sbjct: 182 -NKDRF--NKVYYS-ITGQGADNPPQGVFRIEWETGWMLVT--RPLDREEYDKYVLSSHA 235
Query: 507 RDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEA- 565
G + + + + ++D NDN P F Q F + + ++ + ATD+D
Sbjct: 236 VSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNID 295
Query: 566 -PNNIVRYEIISGN----YDNKFSLHPETGV 591
N ++ Y I+ + N F+++ ETGV
Sbjct: 296 SLNGVLSYSILKQDPEEPIPNLFTINRETGV 326
Score = 108 bits (270), Expect = 2e-24
Identities = 43/266 (16%), Positives = 89/266 (33%), Gaps = 43/266 (16%)
Query: 284 PSPQSSTATIAL-VFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMG 342
+STAT+ + V D +N P+F + E+ +G + D +
Sbjct: 465 VPLPTSTATVTVTVED--VNEAPFFVPAVSRVDVSEDLSRGEKI-----ISLVAQDPDKQ 517
Query: 343 KNGIFSLTLENNNGTFEIWPSVVERKAQFTI-----RVRNNKNLDYE----RTRTLSFVI 393
+ S + N+ + T+ V N NLD E + T + ++
Sbjct: 518 QIQKLSYFIGNDPARW------------LTVNKDNGIVTGNGNLDRESEYVKNNTYTVIM 565
Query: 394 VAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATD 453
+ +D ++ + +++++ DVNDN PV + ++T + + +D
Sbjct: 566 LV----TDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNP-----EPQVLTISD 616
Query: 454 VDTNLGGEILYTAILGYKNSSLEL-DAHTGDITIANGQQFDREEASEYKFQVEARDMQGL 512
D ++ + + + G + + + +Y V D Q
Sbjct: 617 ADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLL--SPTQQLKKGDYSIYVLLSDAQNN 674
Query: 513 GLRTVVPLQLTILDVNDNAPIFVQTP 538
TVV T+ A +
Sbjct: 675 PQLTVV--NATVCSCEGKAIKCQEKL 698
Score = 100 bits (251), Expect = 4e-22
Identities = 32/208 (15%), Positives = 58/208 (27%), Gaps = 17/208 (8%)
Query: 398 ISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPE-NATAGEKVVQVKATDVDT 456
+S LL V DV+ P F++ Y + G K+ +V +D T
Sbjct: 8 NASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTT 67
Query: 457 NLGGEILYTAIL------GYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQ 510
G G + H + R V ++ +
Sbjct: 68 RKHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWD-ARGIKHSTNIAVASKRHR 126
Query: 511 GLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLA----SDSRNFSERTFIKATDQDAEAP 566
+L +L + + ++V+ S++ + + +
Sbjct: 127 SGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKSN-KDR 185
Query: 567 NNIVRYEIISGNYD----NKFSLHPETG 590
N V Y I D F + ETG
Sbjct: 186 FNKVYYSITGQGADNPPQGVFRIEWETG 213
Score = 49.5 bits (118), Expect = 3e-06
Identities = 76/517 (14%), Positives = 133/517 (25%), Gaps = 147/517 (28%)
Query: 10 EVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHP---RTIKYGLVS 66
E+ + V D D P F + + + ++A D D + Y ++
Sbjct: 248 EITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILK 307
Query: 67 --EGHPMTVFFTINELTG------PKM----SPQVFLLV---------LMCYSVVA---- 101
P+ FTIN TG + P+ L V L
Sbjct: 308 QDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT 367
Query: 102 ----NYPVFDISTQMRSLLIPASV---KLGTIIYRLRASDSDK--------------DYP 140
N P+FD T A V ++G + RL +D D +
Sbjct: 368 DANDNAPIFDPKT------YTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEG 421
Query: 141 LTFD---ATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTT 197
F+ + ++ LD L + +I V++ +
Sbjct: 422 GFFNITTDPESNQGILTTAK--------------GLDFELRK--QYVLQITVENAEPFSV 465
Query: 198 TVPTSLTAT------DAALNINAQFPHIPGVIVVPE------VLGT-------------- 231
+PTS TAT D N F + V E + +
Sbjct: 466 PLPTS-TATVTVTVEDV--NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKL 522
Query: 232 -YLLWRHLSGPKNMYLMR----EIRLSKPY-RELHTVASGQPVILMVLAEEERKDLNEPS 285
Y + + P + + + RE V + +++L D
Sbjct: 523 SYFI---GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNT-YTVIMLV----TDDGVS- 573
Query: 286 PQSSTATIAL-VFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKN 344
+ T T+ L V D N P + PQ ++D ++ N
Sbjct: 574 VGTGTGTLILHVLDVNDN-GPVPSPRVFTMCDQNPEPQV----------LTISDADIPPN 622
Query: 345 G---IFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSD 401
SL+ ++ S + S ++ D
Sbjct: 623 TYPYKVSLSHGSDLTWKAELDS--------KGTSMLLSPTQQLKKGDYSIYVLLS----D 670
Query: 402 SSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPE 438
+ +N + V L
Sbjct: 671 AQNNPQLTVVNATVC--SCEGKAIKCQEKLVGGFDLP 705
Score = 34.9 bits (80), Expect = 0.11
Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 46/166 (27%)
Query: 9 FEVVVVVDDVQDTPPIF-----INIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYG 63
+ V +T + P I+++ N ++ I +K + Y
Sbjct: 134 RSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFP-KRLVQIKSNKDRFNKVYYS 192
Query: 64 LVSEG--HPMTVFFTINELTG---------------------------PKMSPQVFLLVL 94
+ +G +P F I TG + + + +
Sbjct: 193 ITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITI- 251
Query: 95 MCYSVVA----NYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSD 136
V N P F S + V+ GT + + A+D D
Sbjct: 252 ----NVIDQNDNRPKFTQDVFRGS--VREGVQPGTQVMAVSATDED 291
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 160 bits (406), Expect = 3e-44
Identities = 79/291 (27%), Positives = 119/291 (40%), Gaps = 32/291 (10%)
Query: 312 YITHLDENSPQGTALIFAESFHTQVTDDNMGKNGI-FSLTLENNNGTFEIWPSVVERKAQ 370
+ L+E S L+ TD + G I + L+ + F+I
Sbjct: 6 QMFVLEEFSGPEPILV-----GRLHTDLDPGSKKIKYILSGDGAGTIFQINDI------- 53
Query: 371 FTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNL-LSSQAPVLVYINDVNDNPPVFTA 429
T + K LD E + A D +N L + ++ + D+NDN P F
Sbjct: 54 -TGDIHAIKRLDREEKAEYTLTAQAV----DFETNKPLEPPSEFIIKVQDINDNAPEFLN 108
Query: 430 TLYTAKIPENATAGEKVVQVKATDVDTNLGG---EILYTAILGYKNSSLELDAHTGDITI 486
Y A +PE + G V V ATD D + G +++Y+ + G ++ T I
Sbjct: 109 GPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEG--QPYFSIEPETAIIKT 166
Query: 487 ANGQQFDREEASEYKFQVEARDMQGL--GLRTVVPLQLTILDVNDNAPIFVQTPFEFVLA 544
A DRE EY ++A+DM G GL L +T+ DVNDN P F Q+ + F +
Sbjct: 167 ALPN-MDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVP 225
Query: 545 SDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLH----PETGV 591
D + +KA DQD N Y+II G+ F + + GV
Sbjct: 226 EDVVLGTAIGRVKANDQD-IGENAQSSYDIIDGDGTALFEITSDAQAQDGV 275
Score = 120 bits (303), Expect = 3e-30
Identities = 62/240 (25%), Positives = 88/240 (36%), Gaps = 29/240 (12%)
Query: 279 KDLNEPSPQSSTATIAL-VFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVT 337
D P + + V D N P F Y + E S GT++ VT
Sbjct: 78 VDFETNKPLEPPSEFIIKVQDINDN-APEFLNGPYHATVPEMSILGTSVT-------NVT 129
Query: 338 -----DDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFV 392
D G + ++ F I P I+ N+D E V
Sbjct: 130 ATDADDPVYGNSAKLVYSILEGQPYFSIEPETAI------IKTAL-PNMDREAKEEYLVV 182
Query: 393 IVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKAT 452
I AK++ S LS + V + DVNDNPP F +LY +PE+ G + +VKA
Sbjct: 183 IQAKDMGGHSGG--LSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKAN 240
Query: 453 DVDTNLGGEILYTAILGYKNSSLEL----DAHTGDITIANGQQFDREEASEYKFQVEARD 508
D D + Y I G + E+ A G I + + D E Y +VEA +
Sbjct: 241 DQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLR--KPLDFETKKSYTLKVEAAN 298
Score = 33.8 bits (78), Expect = 0.13
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 11 VVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVS--EG 68
+ V + DV D PP F + ++ + + ++ A D D G Y ++
Sbjct: 201 LTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGT 260
Query: 69 HPMTVFFTINELTG 82
+ G
Sbjct: 261 ALFEITSDAQAQDG 274
Score = 30.0 bits (68), Expect = 2.7
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 10 EVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGD---KGHPRTIKYGLVS 66
E ++ V D+ D P F+N + + +T +TA D D G+ + Y ++
Sbjct: 91 EFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILE 150
Query: 67 EGHPMTVFFTINELTG 82
G P F+I T
Sbjct: 151 -GQPY---FSIEPETA 162
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 163 bits (415), Expect = 1e-43
Identities = 74/324 (22%), Positives = 116/324 (35%), Gaps = 34/324 (10%)
Query: 279 KDLNEPSPQSSTATIAL-VFDQAINT-PPYFDTVQYITHLDENSPQGTALIFAESFHTQV 336
DL S+TA + V D IN P F+ Y + EN +V
Sbjct: 194 ADLQGE-GLSTTAKAVITVKD--INDNAPVFNPSTYQGQVPENEVNARIATL------KV 244
Query: 337 TDDNMGKNG---IFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVI 393
TDD+ + + + F + ++ K LD+E + +
Sbjct: 245 TDDDAPNTPAWKAVYTVVNDPDQQFVVVTD--PTTNDGILKTA--KGLDFEAKQQYILHV 300
Query: 394 VAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATD 453
+ S L+ S A V V + DVN+ P+F ++PE+ G+++ A +
Sbjct: 301 RVENEEPFEGS-LVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTARE 358
Query: 454 VDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEA-----SEYKFQVEARD 508
DT + +I Y I + LE++ TG I + DRE+A S Y + A D
Sbjct: 359 PDTFMDQKITYR-IWRDTANWLEINPETGAIFTR--AEMDREDAEHVKNSTYVALIIATD 415
Query: 509 MQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNN 568
L L +LDVNDNAPI +F + + I D D +
Sbjct: 416 DGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNP-----QPHIITILDPDLPPNTS 470
Query: 569 IVRYEIISGNYDN-KFSLHPETGV 591
E+ G N +
Sbjct: 471 PFTAELTHGASVNWTIEYNDAAQE 494
Score = 159 bits (405), Expect = 3e-42
Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 13/217 (5%)
Query: 378 NKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIP 437
+ LD E A S+ + +++ + D NDN P FT ++ +
Sbjct: 63 TQPLDREAIAKYILYSHA----VSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 438 ENATAGEKVVQVKATDVD---TNLGGEILYTAILGYKNSSL----ELDAHTGDITIANGQ 490
E A G V++V ATD D I YT + ++ TG I++
Sbjct: 119 EGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS- 177
Query: 491 QFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNF 550
DRE Y V+A D+QG GL T +T+ D+NDNAP+F + ++ + + N
Sbjct: 178 GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVN- 236
Query: 551 SERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHP 587
+ +K TD DA + + D +F +
Sbjct: 237 ARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVT 273
Score = 138 bits (350), Expect = 6e-35
Identities = 66/307 (21%), Positives = 115/307 (37%), Gaps = 43/307 (14%)
Query: 304 PPYFDTVQYITHLDENSPQGTALIFAESFHTQVT-----DDNMGKNG--IFSLT----LE 352
P F + + E + GT+++ +V+ DD N +++
Sbjct: 105 RPEFTQEVFEGSVAEGAVPGTSVM-------KVSATDADDDVNTYNAAIAYTIVSQDPEL 157
Query: 353 NNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAP 412
+ F + I V LD E T + V+ A D LS+ A
Sbjct: 158 PHKNMFTVNRDTGV------ISVL-TSGLDRESYPTYTLVVQAA----DLQGEGLSTTAK 206
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDT--NLGGEILYTAILGY 470
++ + D+NDN PVF + Y ++PEN ++ +K TD D + +YT +
Sbjct: 207 AVITVKDINDNAPVFNPSTYQGQVPENE-VNARIATLKVTDDDAPNTPAWKAVYTVVNDP 265
Query: 471 KNS-SLELDAHT--GDITIANGQQFDREEASEYKFQVEARDMQGLG---LRTVVPLQLTI 524
+ D T G + A + D E +Y V + + + + + + +
Sbjct: 266 DQQFVVVTDPTTNDGILKTA--KGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDV 323
Query: 525 LDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFS 584
+DVN+ APIF+ + D E T A + D + + Y I N
Sbjct: 324 VDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTF-MDQKITYRIWRDT-ANWLE 380
Query: 585 LHPETGV 591
++PETG
Sbjct: 381 INPETGA 387
Score = 115 bits (290), Expect = 3e-27
Identities = 40/267 (14%), Positives = 80/267 (29%), Gaps = 45/267 (16%)
Query: 284 PSPQSSTATIAL-VFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMG 342
S STAT+ + V D +N P F + + E+ G + + +
Sbjct: 310 GSLVPSTATVTVDVVD--VNEAPIFMPAERRVEVPEDFGVGQEI-----TSYTAREPDTF 362
Query: 343 KNGIFSLTLENNNGTFEIWPSVVERKAQFTI-----RVRNNKNLDYERTRTL-----SFV 392
+ + + + + I + +D E + +
Sbjct: 363 MDQKITYRIWRDTANW------------LEINPETGAIFTRAEMDREDAEHVKNSTYVAL 410
Query: 393 IVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKAT 452
I+A +D S + + +L+ + DVNDN P+ + +
Sbjct: 411 IIA----TDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQ--FCQRNPQPHIIT---IL 461
Query: 453 DVDTNLGGEILYTAILG--YKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQ 510
D D + N ++E + + I Q E EYK ++ D Q
Sbjct: 462 DPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLIL--QPRKDLEIGEYKIHLKLADNQ 519
Query: 511 GLGLRTVVPLQLTILDVNDNAPIFVQT 537
T + + + D ++
Sbjct: 520 NKDQVTTL--DVHVCDCEGTVNNCMKA 544
Score = 97.8 bits (244), Expect = 2e-21
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 15/171 (8%)
Query: 432 YTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLE-----LDAHTGDITI 486
PEN GE + + + ++ Y+ I G ++ TG + +
Sbjct: 5 PPISCPENEK-GEFPKNLVQIKSNRDKETKVFYS-ITGQGADKPPVGVFIIERETGWLKV 62
Query: 487 ANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASD 546
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A
Sbjct: 63 T--QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 547 SRNFSERTFIKATDQD--AEAPNNIVRYEIISGN----YDNKFSLHPETGV 591
+ + + ATD D N + Y I+S + + N F+++ +TGV
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 171
Score = 52.3 bits (126), Expect = 4e-07
Identities = 25/190 (13%), Positives = 48/190 (25%), Gaps = 36/190 (18%)
Query: 249 EIRLSKPY-RELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIAL-VFDQAINTPPY 306
I RE + +++A D P + T T+ L + D N P
Sbjct: 387 AIFTRAEMDREDAEHVKNSTYVALIIA----TDDGSP-IATGTGTLLLVLLDVNDN-API 440
Query: 307 FDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNG---IFSLTLENN-NGTFEIWP 362
+ + +PQ +I D ++ N LT + N T E
Sbjct: 441 PE--PRNMQFCQRNPQPH-IITI-------LDPDLPPNTSPFTAELTHGASVNWTIEYND 490
Query: 363 SVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVND 422
+ + + D+ + + V++ D
Sbjct: 491 A--------AQESLILQPRKDLEIGEYKIHLKLA----DNQN--KDQVTTLDVHVCDCEG 536
Query: 423 NPPVFTATLY 432
+
Sbjct: 537 TVNNCMKAHH 546
Score = 40.4 bits (95), Expect = 0.002
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 10 EVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRT---IKYGLVS 66
E+V+ V D D P F +A + K++A D D I Y +VS
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 67 --EGHPMTVFFTINELTG 82
P FT+N TG
Sbjct: 153 QDPELPHKNMFTVNRDTG 170
Score = 39.6 bits (93), Expect = 0.003
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 11 VVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHP 70
V V V DV + PIF+ + +++ + + +T TA + D + I Y + +
Sbjct: 319 VTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTAN 377
Query: 71 MTVFFTINELTG 82
+ IN TG
Sbjct: 378 ---WLEINPETG 386
Score = 31.1 bits (71), Expect = 1.1
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 7/73 (9%)
Query: 11 VVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRT-IKYGLVSEGH 69
+++V+ DV D PI +Q N IT +D D + L
Sbjct: 427 LLLVLLDVNDNAPIP--EPRNMQFCQR---NPQPHIITILDPDLPPNTSPFTAELTHGAS 481
Query: 70 PMTVFFTINELTG 82
N+
Sbjct: 482 VNW-TIEYNDAAQ 493
Score = 30.4 bits (69), Expect = 2.1
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 46 KITAIDGDKGHPRTIKYGLVSEG--HPMTVFFTINELTG 82
+ I ++ + Y + +G P F I TG
Sbjct: 20 NLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETG 58
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 161 bits (409), Expect = 1e-42
Identities = 62/268 (23%), Positives = 104/268 (38%), Gaps = 30/268 (11%)
Query: 337 TDDNMGKNGI--FSLTLENN----NGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLS 390
+ KN +S+T G F I P + ++ K LD E
Sbjct: 24 IRSDRDKNLSLRYSVTGPGADQPPTGIFIINPI--------SGQLSVTKPLDRELIARFH 75
Query: 391 FVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVK 450
A D + N + + +++ + D+NDN P F ++ +PE + G V+ V
Sbjct: 76 LRAHAV----DINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVT 131
Query: 451 ATDVDTNLG--GEILYTAILGYKNSSL----ELDAHTGDITIANGQQFDREEASEYKFQV 504
A D D G + Y + ++ ++ TGDI DRE+ +Y +
Sbjct: 132 AIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAA-GLDREKVQQYTLII 190
Query: 505 EARDMQG---LGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQ 561
+A DM+G GL +T+ DVNDN P F F + + + + TD+
Sbjct: 191 QATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVD-VIVANLTVTDK 249
Query: 562 DAEA-PNNIVRYEIISGNYDNKFSLHPE 588
D P Y I G+ +F++ +
Sbjct: 250 DQPHTPAWNAAYRISGGDPTGRFAILTD 277
Score = 137 bits (347), Expect = 2e-34
Identities = 69/311 (22%), Positives = 109/311 (35%), Gaps = 45/311 (14%)
Query: 304 PPYFDTVQYITHLDENSPQGTALIFAESFHTQVT----DDNMGKNG--IFSLT----LEN 353
P F + + E S GT ++ VT DD NG + +
Sbjct: 105 RPEFLHQVWNGSVPEGSKPGTYVM-------TVTAIDADDPNALNGMLRYRILSQAPSTP 157
Query: 354 NNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNL---LSSQ 410
+ F I + I LD E+ + + +I A D N LS+
Sbjct: 158 SPNMFTINNETGD------IITVA-AGLDREKVQQYTLIIQAT----DMEGNPTYGLSNT 206
Query: 411 APVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDT--NLGGEILYTAIL 468
A ++ + DVNDNPP FTA + ++PEN V + TD D Y
Sbjct: 207 ATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRISG 265
Query: 469 GYKNS--SLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGL------GLRTVVPL 520
G ++ D ++ D + + D E + V A + L ++ +
Sbjct: 266 GDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATV 325
Query: 521 QLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYD 580
+T++DVN+N P F P + T + A D D +RY +S
Sbjct: 326 SVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRY-MQQNIRYTKLSDP-A 382
Query: 581 NKFSLHPETGV 591
N + P G
Sbjct: 383 NWLKIDPVNGQ 393
Score = 123 bits (311), Expect = 6e-30
Identities = 49/288 (17%), Positives = 86/288 (29%), Gaps = 42/288 (14%)
Query: 268 VILMVLAEEERKDLNEPSPQ-SSTATIAL-VFDQAINTPPYFDTVQYITHLDENSPQGTA 325
+L V AE + STAT+++ V D +N PYF I +E GT
Sbjct: 299 FVLTVAAENQVPLAKGIQHPPQSTATVSVTVID--VNENPYFAPNPKIIRQEEGLHAGTM 356
Query: 326 LIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTI-----RVRNNKN 380
L D + T ++ I ++
Sbjct: 357 L-----TTLTAQDPDRYMQQNIRYTKLSDPA------------NWLKIDPVNGQITTIAV 399
Query: 381 LDYE----RTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKI 436
LD E + + +A SD+ +S + +Y+ D+NDN P A+
Sbjct: 400 LDRESPNVKNNIYNATFLA----SDNGIPPMSGTGTLQIYLLDINDNAPQVLP--QEAET 453
Query: 437 PENATAGEKVVQVKATDVDTNLGGEILYTAILGYK---NSSLELDAHTGDITIANGQQFD 493
E + + A D D + + + ++ GD N +
Sbjct: 454 CETPEPN--SINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLN-LKIK 510
Query: 494 REEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEF 541
EA Y+ + D + L++ + + N
Sbjct: 511 FLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHHHHH 558
Score = 70.8 bits (174), Expect = 6e-13
Identities = 81/511 (15%), Positives = 143/511 (27%), Gaps = 131/511 (25%)
Query: 10 EVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGD--KGHPRTIKYGLVS- 66
++V+ V D+ D P F++ + + +TAID D ++Y ++S
Sbjct: 93 DIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQ 152
Query: 67 -EGHPMTVFFTINELTG------PKM----SPQVFLLV------------LMCYSVVA-- 101
P FTIN TG + Q L++ L +
Sbjct: 153 APSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVIT 212
Query: 102 ------NYPVFDISTQMRSLLIPASVK---LGTIIYRLRASDSDKDYPLTFDATDFGSYV 152
N P F T V + I+ L +D D+ T +
Sbjct: 213 VTDVNDNPPEFTAMT------FYGEVPENRVDVIVANLTVTDKDQ------PHTPAWNAA 260
Query: 153 VKIKSLPCSKN---SSFCEANVY-------LDRVLVPGQVFQFRIIVKDTRGDTTTVPTS 202
+I + + +N +D +F + ++ +
Sbjct: 261 YRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNR--MFVLTVAAENQVPLAKGIQHP 318
Query: 203 LTATDAALNI-------NAQFPHIPGVIVVPE------VLGT---------------YLL 234
+T A +++ N F P +I E +L T Y
Sbjct: 319 PQST-ATVSVTVIDVNENPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTK 377
Query: 235 WRHLSGPKNMYLMR----EIRLSKPY-RELHTVASGQPVILMVLAEEERKDLNEPSPQSS 289
LS P N + +I RE V + LA D P P S
Sbjct: 378 ---LSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNA-TFLA----SDNGIP-PMSG 428
Query: 290 TATIAL-VFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNG--- 345
T T+ + + D N P + E + I A D ++ N
Sbjct: 429 TGTLQIYLLDINDN-APQV--LPQEAETCETPEPNSINITA-------LDYDIDPNAGPF 478
Query: 346 IFSLTLE--NNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSS 403
F L L + I + ++ + + I+ DS
Sbjct: 479 AFDLPLSPVTIKRNWTINRLNGD-----FAQLN--LKIKFLEAGIYEVPIIIT----DSG 527
Query: 404 SNLLSSQAPVLVYINDVNDNPPVFTATLYTA 434
+ S+ + + V + + N +
Sbjct: 528 NPPKSNISILRVKVCQCDSNGDCTDVHHHHH 558
Score = 33.1 bits (76), Expect = 0.27
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 41/142 (28%)
Query: 28 IQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEG--HPMTVFFTINELTG--- 82
+ P I L N ++ I D+ +++Y + G P T F IN ++G
Sbjct: 3 VIPPINLPENSRGPFPQ-ELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLS 61
Query: 83 ------------------------PKMSPQVFLLVLMCYSVVA----NYPVFDISTQMRS 114
++ + +++ V N P F S
Sbjct: 62 VTKPLDRELIARFHLRAHAVDINGNQVENPIDIVI-----NVIDMNDNRPEFLHQVWNGS 116
Query: 115 LLIPASVKLGTIIYRLRASDSD 136
+P K GT + + A D+D
Sbjct: 117 --VPEGSKPGTYVMTVTAIDAD 136
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 156 bits (396), Expect = 6e-42
Identities = 68/353 (19%), Positives = 121/353 (34%), Gaps = 42/353 (11%)
Query: 249 EIRLSKPY-RELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIA-LVFDQAINT-PP 305
+R+ K + E +++ + + LV D +N PP
Sbjct: 56 AVRVKKKWDYEELGPEKTIDFWVIITNMG---HNAGI-KYTDNQRVIILVKD--VNDEPP 109
Query: 306 YF--DTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPS 363
YF + + N+P T + Q D + N + + + G FE+
Sbjct: 110 YFINRPLPMQAVVQLNAPPNTPVF-----TLQARDPDTDHNIHYFIVRDRTGGRFEVDER 164
Query: 364 VVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDN 423
VR ++ + A++ + S + I
Sbjct: 165 SGV--------VRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSI-VGGKR 215
Query: 424 PPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYT-AILGYKNSSLELDAHTG 482
P F Y A+IPEN ++ +KA EI YT G + + +G
Sbjct: 216 APQFYMPSYEAEIPENQKKDSDIISIKAKSFAD---REIRYTLKAQGQGAGTFNIGPTSG 272
Query: 483 DITIANGQQFDREEASE---YKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPF 539
+ +A ++ D E+ + Y V A + G T V L + + DVNDNAP F +
Sbjct: 273 IVKLA--KELDFEDLRQPHVYSLIVTATE-DSGGFSTSVDLTIRVTDVNDNAPKFELPDY 329
Query: 540 E-FVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGV 591
+ + D + +KA D D+ N + Y + + F++ G+
Sbjct: 330 QAHNVDEDIPLGTSILRVKAMDSDSG-SNAEIEYLVSDDH----FAVDS-NGI 376
Score = 154 bits (391), Expect = 3e-41
Identities = 57/285 (20%), Positives = 96/285 (33%), Gaps = 28/285 (9%)
Query: 318 ENSPQGTALIFAESFHTQVTDDNMGKNGI--FSLTLENNNGTFEIWPSVVERKAQFTIRV 375
+ + T+ + G F L E + TF+I + V
Sbjct: 6 RAVRPTKRI--------EFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAV 57
Query: 376 RNNKNLDYE---RTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFT--AT 430
R K DYE +T+ F ++ ++ + V++ + DVND PP F
Sbjct: 58 RVKKKWDYEELGPEKTIDFWVII-TNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPL 116
Query: 431 LYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQ 490
A + NA V ++A D DT I Y + E+D +G +
Sbjct: 117 PMQAVVQLNAPPNTPVFTLQARDPDT--DHNIHYFIVRDRTGGRFEVDERSGVVRTR--G 172
Query: 491 QFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI---LDVNDNAPIFVQTPFEFVLASDS 547
+ EY V+A D G + AP F +E + +
Sbjct: 173 TDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQ 232
Query: 548 RNFSERTFIKATDQDAEAPNNIVRYEII-SGNYDNKFSLHPETGV 591
+ S+ IKA + +RY + G F++ P +G+
Sbjct: 233 KKDSDIISIKAKSFA----DREIRYTLKAQGQGAGTFNIGPTSGI 273
Score = 117 bits (294), Expect = 2e-28
Identities = 57/254 (22%), Positives = 93/254 (36%), Gaps = 37/254 (14%)
Query: 281 LNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGT--ALIFAESFHTQVTD 338
+ ST L P F Y + EN + + I A+S
Sbjct: 194 KVDDRRFQSTPEERLSIVGGKR-APQFYMPSYEAEIPENQKKDSDIISIKAKS------F 246
Query: 339 DNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSF---VIVA 395
+ GTF I P+ + V+ K LD+E R ++ A
Sbjct: 247 ADREIRYTLKAQG-QGAGTFNIGPT--------SGIVKLAKELDFEDLRQPHVYSLIVTA 297
Query: 396 KEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTA-KIPENATAGEKVVQVKATDV 454
E S S+ + + + DVNDN P F Y A + E+ G +++VKA D
Sbjct: 298 TE-----DSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDS 352
Query: 455 DTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASE-YKFQVEARDMQGL- 512
D+ EI Y + + +D+ G I +Q D + + Y+F V A+D +G
Sbjct: 353 DSGSNAEIEYL-VS---DDHFAVDS-NGIIVNN--KQLDADNNNAYYEFIVTAKD-KGEP 404
Query: 513 GLRTVVPLQLTILD 526
V +++ +
Sbjct: 405 PKSGVATVRVYTKN 418
Score = 86.2 bits (214), Expect = 4e-18
Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 22/172 (12%)
Query: 435 KIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANG----- 489
++ +++ T+ D + G+ ++ + ++ +T+
Sbjct: 3 RVTRAVRPT---KRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRV 59
Query: 490 -QQFDREEASEYKFQ------VEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFV 542
+++D EE K G+ + + + DVND P F+ P +
Sbjct: 60 KKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPL-PM 118
Query: 543 LASDSRNFSERTFI---KATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGV 591
A N T + +A D D N + Y I+ +F + +GV
Sbjct: 119 QAVVQLNAPPNTPVFTLQARDPD-TDHN--IHYFIVRDRTGGRFEVDERSGV 167
Score = 40.8 bits (96), Expect = 0.001
Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 37/158 (23%)
Query: 10 EVVVVVDDVQDTPPIFINIQPVIQ--LAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSE 67
V+++V DV D PP FIN +Q + N N + + A D D I Y +V +
Sbjct: 96 RVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTD--HNIHYFIVRD 153
Query: 68 GHPMTVFFTINELTG---------------------------PKMSPQVFLLVLMCYSVV 100
F ++E +G + S+V
Sbjct: 154 RTGGR--FEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIV 211
Query: 101 AN--YPVFDISTQMRSLLIPASVKLGTIIYRLRASDSD 136
P F + + IP + K + I ++A
Sbjct: 212 GGKRAPQFYMPS--YEAEIPENQKKDSDIISIKAKSFA 247
Score = 30.7 bits (70), Expect = 1.4
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 547 SRNFSERTF----IKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGVPHKWSTTQVRI 602
SR + I+ T+ D +++ F + + + VR+
Sbjct: 1 SRRVTRAVRPTKRIEFTEAD-GDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRV 59
Score = 30.7 bits (70), Expect = 1.6
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 11 VVVVVDDVQDTPPIFINIQPVIQLAP---NLTMNDVLTKITAIDGDKGHPRTIKYGLVSE 67
+ + V DV D P F P Q ++ + + ++ A+D D G I+Y + +
Sbjct: 310 LTIRVTDVNDNAPKF--ELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDD 367
Query: 68 GHPMTVFFTINELTG 82
F ++ G
Sbjct: 368 ------HFAVDS-NG 375
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 148 bits (376), Expect = 4e-40
Identities = 59/293 (20%), Positives = 102/293 (34%), Gaps = 37/293 (12%)
Query: 249 EIRLSKP--YRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIAL-VFDQAINT-P 304
+R+ K Y EL + +++ N + + + V D +N P
Sbjct: 51 AVRVKKKWDYEELGPEKTIDFWVIITNMG-----HNAGIKYTDNQRVIILVKD--VNDEP 103
Query: 305 PYF--DTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWP 362
PYF + + N+P T + Q D + N + + + G FE+
Sbjct: 104 PYFINRPLPMQAVVQLNAPPNTPVFTL-----QARDPDTDHNIHYFIVRDRTGGRFEVDE 158
Query: 363 SVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVND 422
+ VR ++ + A++ + S + I
Sbjct: 159 R--------SGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GK 209
Query: 423 NPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYT-AILGYKNSSLELDAHT 481
P F Y A+IPEN ++ +KA EI YT G + + +
Sbjct: 210 RAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTS 266
Query: 482 GDITIANGQQFDREEASE---YKFQVEARDMQGLGLRTVVPLQLTILDVNDNA 531
G + +A ++ D E+ + Y V A + G T V L + + DVNDNA
Sbjct: 267 GIVKLA--KELDFEDLRQPHVYSLIVTATE-DSGGFSTSVDLTIRVTDVNDNA 316
Score = 148 bits (375), Expect = 4e-40
Identities = 58/269 (21%), Positives = 103/269 (38%), Gaps = 22/269 (8%)
Query: 335 QVTDDNMGKNG--IFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYE---RTRTL 389
+ T+ + G +F L E + TF+I + VR K DYE +T+
Sbjct: 10 EFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTI 69
Query: 390 SFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTAT--LYTAKIPENATAGEKVV 447
F ++ + ++ + V++ + DVND PP F A + NA V
Sbjct: 70 DFWVIITNMG-HNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVF 128
Query: 448 QVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEAR 507
++A D DT I Y + E+D +G + + EY V+A
Sbjct: 129 TLQARDPDT--DHNIHYFIVRDRTGGRFEVDERSGVVRTR--GTDLFQLDMEYVLYVKAE 184
Query: 508 D----MQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDA 563
D + ++ +L+I+ AP F +E + + + S+ IKA
Sbjct: 185 DQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA- 242
Query: 564 EAPNNIVRYEII-SGNYDNKFSLHPETGV 591
+ +RY + G F++ P +G+
Sbjct: 243 ---DREIRYTLKAQGQGAGTFNIGPTSGI 268
Score = 92.1 bits (229), Expect = 1e-20
Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 21/166 (12%)
Query: 442 AGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLEL--------DAHTGDITIANGQQFD 493
A +++ T+ D + G+ ++ + ++ G + + +++D
Sbjct: 2 AVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK--KKWD 59
Query: 494 REEASEYK------FQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTP--FEFVLAS 545
EE K G+ + + + DVND P F+ P + V+
Sbjct: 60 YEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQL 119
Query: 546 DSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGV 591
++ + ++A D D N + Y I+ +F + +GV
Sbjct: 120 NAPPNTPVFTLQARDPD-TDHN--IHYFIVRDRTGGRFEVDERSGV 162
Score = 42.0 bits (99), Expect = 4e-04
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 10 EVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGH 69
E + + P F ++ N + + I A I+Y L ++G
Sbjct: 200 EERLSIVGG-KRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADRE---IRYTLKAQG- 254
Query: 70 PMTVFFTINELTG 82
F I +G
Sbjct: 255 QGAGTFNIGPTSG 267
Score = 31.6 bits (72), Expect = 0.76
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 11 VVVVVDDVQDTPPIFINIQPVIQLAP--NLTMNDVLTKITAIDGDKGHPRTIKYGLVSEG 68
V+++V DV D PP FIN +Q N N + + A D D H I Y +V +
Sbjct: 92 VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDR 149
Query: 69 HPMTVFFTINELTG 82
F ++E +G
Sbjct: 150 TGGR--FEVDERSG 161
Score = 29.7 bits (67), Expect = 2.7
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 102 NYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSD 136
P F ++ + T ++ L+A D D
Sbjct: 102 EPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPD 136
Score = 28.9 bits (65), Expect = 5.0
Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 556 IKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGVPHKWSTTQVRI 602
I+ T+ D +++ F + + + VR+
Sbjct: 9 IEFTEAD-GDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRV 54
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 140 bits (356), Expect = 2e-38
Identities = 60/231 (25%), Positives = 93/231 (40%), Gaps = 30/231 (12%)
Query: 304 PPYFDTVQYITHLD--ENSPQGTALIFAESFHTQVTD-DNMGKNGIFSLTLENNNGTFEI 360
P+F + T+L E++P G+++ D DN +F ++ E + F +
Sbjct: 5 LPFFTNHFFDTYLLISEDTPVGSSVT-----QLLARDMDN-DPL-VFGVSGEEASRFFAV 57
Query: 361 WPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDV 420
P T V + LD E + SD V + + DV
Sbjct: 58 EPD--------TGVVWLRQPLDRETKSEFTVEFSV----SDHQG---VITRKVNIQVGDV 102
Query: 421 NDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAH 480
NDN P F Y+ +IPEN G + V ATD D GG +LY+ + +D+
Sbjct: 103 NDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS--FQPPSPFFAIDSA 160
Query: 481 TGDITIANGQQFDREEASEYKFQVEARDM-QGLGLRTVVPLQLTILDVNDN 530
G +T+ Q+ D E Y+ V A D + L T+ L + I D+ D
Sbjct: 161 RGIVTVI--QELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 133 bits (337), Expect = 5e-36
Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 421 NDNPPVFTATLYTA--KIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELD 478
+ P FT + I E+ G V Q+ A D+D +++ + ++
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVE 58
Query: 479 AHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTP 538
TG + + Q DRE SE+ + D QG+ R V + + DVNDNAP F P
Sbjct: 59 PDTGVVWLR--QPLDRETKSEFTVEFSVSDHQGVITRKVN---IQVGDVNDNAPTFHNQP 113
Query: 539 FEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGV 591
+ + ++ + + ATD D V Y + F++ G+
Sbjct: 114 YSVRIPENTPVGTPIFIVNATDPDLG-AGGSVLYSFQPPS--PFFAIDSARGI 163
Score = 34.9 bits (81), Expect = 0.054
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 11 VVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHP 70
V + V DV D P F N +++ N + + + A D D G ++ Y P
Sbjct: 95 VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF-QPPSP 153
Query: 71 MTVFFTINELTG 82
FF I+ G
Sbjct: 154 ---FFAIDSARG 162
Score = 30.6 bits (70), Expect = 0.98
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 102 NYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSD 136
P F LLI +G+ + +L A D D
Sbjct: 4 RLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD 38
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 138 bits (349), Expect = 1e-37
Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 27/228 (11%)
Query: 312 YITHLDENSPQGTALIFAESFHTQVTDDNMGKNGI-FSLTLENNNGTFEIWPSVVERKAQ 370
++E + L+ +D + G I + L+ E F I
Sbjct: 7 QFFVIEEYTGPDPVLV-----GRLHSDIDSGDGNIKYILSGEGAGTIFVIDDK------- 54
Query: 371 FTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNL-LSSQAPVLVYINDVNDNPPVFTA 429
+ + K LD E + + A D +N L + +V + D+NDNPP F
Sbjct: 55 -SGNIHATKTLDREERAQYTLMAQA----VDRDTNRPLEPPSEFIVKVQDINDNPPEFLH 109
Query: 430 TLYTAKIPENATAGEKVVQVKATDVDTNLGG---EILYTAILGYKNSSLELDAHTGDITI 486
+Y A +PE + G V+QV A+D D G +++Y+ + G ++A TG I
Sbjct: 110 EIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG--QPYFSVEAQTGIIRT 167
Query: 487 ANGQQFDREEASEYKFQVEARDMQGL--GLRTVVPLQLTILDVNDNAP 532
A DRE EY ++A+DM G GL + +T+ D +
Sbjct: 168 ALP-NMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 111 bits (279), Expect = 5e-28
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 8/163 (4%)
Query: 432 YTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQ 491
I E +V +D+D+ G I Y + +D +G+I +
Sbjct: 7 QFFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHAT--KT 63
Query: 492 FDREEASEYKFQVEARDM-QGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNF 550
DREE ++Y +A D L + + D+NDN P F+ + + S
Sbjct: 64 LDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVG 123
Query: 551 SERTFIKATDQDAEA--PNNIVRYEIISGNYDNKFSLHPETGV 591
+ + A+D D + + Y I+ G FS+ +TG+
Sbjct: 124 TSVIQVTASDADDPTYGNSAKLVYSILEGQ--PYFSVEAQTGI 164
Score = 73.1 bits (180), Expect = 6e-15
Identities = 37/165 (22%), Positives = 53/165 (32%), Gaps = 31/165 (18%)
Query: 269 ILMVLAEEERKDLNEPSPQSSTATIAL-VFDQAINTPPYFDTVQYITHLDENSPQGTALI 327
LM A D + P + + V D N PP F Y ++ E S GT++I
Sbjct: 73 TLMAQA----VDRDTNRPLEPPSEFIVKVQDINDN-PPEFLHEIYHANVPERSNVGTSVI 127
Query: 328 FAESFHTQVT-----DDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFT--IRVRNNKN 380
QVT D G + ++ F + T IR N
Sbjct: 128 -------QVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQ--------TGIIRT-ALPN 171
Query: 381 LDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPP 425
+D E VI AK+ LS V + + D +
Sbjct: 172 MDREAKEEYHVVIQAKD--MGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 37.3 bits (87), Expect = 0.008
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 10 EVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDK---GHPRTIKYGLVS 66
E +V V D+ D PP F++ + + + ++TA D D G+ + Y ++
Sbjct: 92 EFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILE 151
Query: 67 EGHPMTVFFTINELTG 82
G P F++ TG
Sbjct: 152 -GQPY---FSVEAQTG 163
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 135 bits (340), Expect = 4e-36
Identities = 41/257 (15%), Positives = 70/257 (27%), Gaps = 42/257 (16%)
Query: 306 YFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLE-------NNNGTF 358
YF Y L + GT L+ H + L + N
Sbjct: 2 YFSRDAYWEKLYVDQAAGTPLL---YVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWI 58
Query: 359 EIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEI----------SSDSSSNLLS 408
I T + ++LD+ LS + +
Sbjct: 59 RIQED--------TGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQ 110
Query: 409 SQAPVLVYINDVNDNPPV----------FTATLYTAKIPENATAGEKVVQVKATDVDTNL 458
VY + N + P F T + +I EN G
Sbjct: 111 WPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCP 170
Query: 459 GGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGL-GLRTV 517
+ Y +L + + +++ DRE+ +Y+ G +
Sbjct: 171 QISVAYR-LLEGEGLPFRSAPDSLEVSTR--WALDREQREKYELVAVCTVHAGAREEVVM 227
Query: 518 VPLQLTILDVNDNAPIF 534
VP +T+ D +D+AP F
Sbjct: 228 VPFPVTVYDEDDSAPEF 244
Score = 94.6 bits (235), Expect = 5e-22
Identities = 25/196 (12%), Positives = 53/196 (27%), Gaps = 35/196 (17%)
Query: 427 FTATLYTAKIPENATAGEKVVQVKATDVDTNLG--GEILYTAILGYKNSSLE-----LDA 479
F+ Y K+ + AG ++ V A + Y+ E +
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 480 HTGDITIANGQQFDREEASEYKFQ--------------VEARDMQGLGLRTVVPLQLTIL 525
TG + + + D + + + ++ + ++
Sbjct: 63 DTGLLYLQ--RSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFS 120
Query: 526 DVNDNAPI----------FVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEII 575
N + P F +T F + + + F Q P V Y ++
Sbjct: 121 FFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQF-LCPQISVAYRLL 179
Query: 576 SGNYDNKFSLHPETGV 591
G F P++
Sbjct: 180 EGE-GLPFRSAPDSLE 194
Score = 37.2 bits (86), Expect = 0.011
Identities = 8/82 (9%), Positives = 17/82 (20%), Gaps = 13/82 (15%)
Query: 11 VVVVVDDVQDTPPIFINIQPVIQLAP----------NLTMNDVLTKITAIDGDKGHPRTI 60
V + P +++P P N ++
Sbjct: 115 ARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISV 174
Query: 61 KYGLVSEGHPMTVFFTINELTG 82
Y L+ + F +
Sbjct: 175 AYRLLEGEG---LPFRSAPDSL 193
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 125 bits (317), Expect = 3e-33
Identities = 53/233 (22%), Positives = 84/233 (36%), Gaps = 34/233 (14%)
Query: 308 DTVQYITHLDENSPQGT-ALIFAESFHTQVTDDNMGKNG--IFSLTLENNN----GTFEI 360
D V EN + N K +S+T + + G F I
Sbjct: 1 DWVIAAISCPENEKGEFPKNLVQ-------IKSNRDKETKVFYSITGQGADKPPVGVFII 53
Query: 361 WPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDV 420
T ++ + LD E A S+ + +++ + D
Sbjct: 54 ERE--------TGWLKVTQPLDREAIAKYILYSHA----VSSNGEAVEDPMEIVITVTDQ 101
Query: 421 NDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLG---GEILYTAILGYKNSSLE- 476
NDN P FT ++ + E A G V++V ATD D ++ I YT + +
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 161
Query: 477 ---LDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526
++ TG I++ DRE Y V+A D+QG GL T +T+ D
Sbjct: 162 MFTVNRDTGVISVLTS-GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 113 bits (284), Expect = 9e-29
Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 13/171 (7%)
Query: 431 LYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLE----LDAHTGDITI 486
+ PEN GE + + + ++ Y+ + ++ TG + +
Sbjct: 4 IAAISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKV 62
Query: 487 ANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASD 546
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A
Sbjct: 63 T--QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 547 SRNFSERTFIKATDQD--AEAPNNIVRYEIISGN----YDNKFSLHPETGV 591
+ + + ATD D N + Y I+S + + N F+++ +TGV
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 171
Score = 45.8 bits (109), Expect = 1e-05
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 38/164 (23%)
Query: 269 ILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIF 328
IL A N + + + V DQ N P F + + E + GT+++
Sbjct: 75 ILYSHA----VSSNGEAVEDPMEIVITVTDQNDN-RPEFTQEVFEGSVAEGAVPGTSVM- 128
Query: 329 AESFHTQVT-----DDNMGKNGIFSLTLENNN------GTFEIWPSVVERKAQFT--IRV 375
+V+ DD N + T+ + + F + T I V
Sbjct: 129 ------KVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRD--------TGVISV 174
Query: 376 RNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419
LD E T + V+ A D LS+ A ++ + D
Sbjct: 175 -LTSGLDRESYPTYTLVVQAA----DLQGEGLSTTAKAVITVKD 213
Score = 39.2 bits (92), Expect = 0.002
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 10 EVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRT---IKYGLVS 66
E+V+ V D D P F +A + K++A D D I Y +VS
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 67 E--GHPMTVFFTINELTG 82
+ P FT+N TG
Sbjct: 153 QDPELPHKNMFTVNRDTG 170
Score = 31.9 bits (73), Expect = 0.50
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 41 NDVLTKITAIDGDKGHPRTIKYGLVSEGH--PMTVFFTINELTG 82
+ + I ++ + Y + +G P F I TG
Sbjct: 15 GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETG 58
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 122 bits (309), Expect = 3e-32
Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 28/205 (13%)
Query: 337 TDDNMGKNG--IFSLTLENNN----GTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLS 390
+ KN +S+T + G F I P + ++ K LD E
Sbjct: 24 IRSDRDKNLSLRYSVTGPGADQPPTGIFIINPI--------SGQLSVTKPLDRELIARFH 75
Query: 391 FVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVK 450
A D + N + + +++ + D+NDN P F ++ +PE + G V+ V
Sbjct: 76 LRAHA----VDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVT 131
Query: 451 ATDVDTNLG--GEILYTAILGYKNSSLE----LDAHTGDITIANGQQFDREEASEYKFQV 504
A D D G + Y + ++ ++ TGDI DRE+ +Y +
Sbjct: 132 AIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAA-GLDREKVQQYTLII 190
Query: 505 EARDMQG---LGLRTVVPLQLTILD 526
+A DM+G GL +T+ D
Sbjct: 191 QATDMEGNPTYGLSNTATAVITVTD 215
Score = 114 bits (287), Expect = 4e-29
Identities = 35/177 (19%), Positives = 74/177 (41%), Gaps = 20/177 (11%)
Query: 424 PPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLE----LDA 479
PP+ +PEN+ G ++ D + + Y+ + ++
Sbjct: 5 PPIN--------LPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINP 55
Query: 480 HTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPF 539
+G +++ + DRE + + + A D+ G + + + + ++D+NDN P F+ +
Sbjct: 56 ISGQLSVT--KPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVW 113
Query: 540 EFVLASDSRNFSERTFIKATDQDAEA-PNNIVRYEIISGN----YDNKFSLHPETGV 591
+ S+ + + A D D N ++RY I+S N F+++ ETG
Sbjct: 114 NGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGD 170
Score = 46.2 bits (110), Expect = 9e-06
Identities = 31/161 (19%), Positives = 56/161 (34%), Gaps = 30/161 (18%)
Query: 269 ILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIF 328
L A D+N ++ + V D N P F + + E S GT ++
Sbjct: 75 HLRAHAV----DINGNQVENPIDIVINVIDMNDN-RPEFLHQVWNGSVPEGSKPGTYVM- 128
Query: 329 AESFHTQVT----DDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIR------VRNN 378
VT DD NG+ + + + FTI +
Sbjct: 129 ------TVTAIDADDPNALNGMLRYRILSQAPSTPSPN-------MFTINNETGDIITVA 175
Query: 379 KNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419
LD E+ + + +I A ++ + + LS+ A ++ + D
Sbjct: 176 AGLDREKVQQYTLIIQATDMEGNPTYG-LSNTATAVITVTD 215
Score = 38.5 bits (90), Expect = 0.003
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 10 EVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGD--KGHPRTIKYGLVS- 66
++V+ V D+ D P F++ + + +TAID D ++Y ++S
Sbjct: 93 DIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQ 152
Query: 67 -EGHPMTVFFTINELTG 82
P FTIN TG
Sbjct: 153 APSTPSPNMFTINNETG 169
Score = 33.5 bits (77), Expect = 0.14
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 43 VLTKITAIDGDKGHPRTIKYGLVSEG--HPMTVFFTINELTG 82
++ I D+ +++Y + G P T F IN ++G
Sbjct: 17 FPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISG 58
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 122 bits (308), Expect = 4e-32
Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 21/198 (10%)
Query: 334 TQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVI 393
++T KN ++ + E+ N F++ + + LD E+
Sbjct: 22 GKLTSSVGNKNAMYIIEGESANTIFKVQGY--------DGDIYAFERLDREKKAEYELTA 73
Query: 394 VAKEISSDSSSN-LLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKAT 452
D +N L + ++ ++D+NDN P+F ++ +PE + G V +V A
Sbjct: 74 HI----IDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAE 129
Query: 453 DVDTNLGG---EILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDM 509
D D + Y I G N +D T DRE S Y+ V+A+D
Sbjct: 130 DADDPTVAGHATVTYQIIKG--NEYFTVDDSGVIFTAR--ADLDRESQSAYEIIVKAKDA 185
Query: 510 QGL-GLRTVVPLQLTILD 526
GL G + + + + D
Sbjct: 186 LGLTGESSTATVIIRLTD 203
Score = 105 bits (263), Expect = 5e-26
Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 13/161 (8%)
Query: 436 IPENATA--GEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFD 493
I E + V ++ ++ + +Y N+ ++ + GDI ++ D
Sbjct: 9 IREEIDSPLPHHVGKLTSSVGN----KNAMYIIEGESANTIFKVQGYDGDIYAF--ERLD 62
Query: 494 REEASEYKFQVEARDMQGL-GLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSE 552
RE+ +EY+ D + L + + D+NDNAPIFVQ F + SR +
Sbjct: 63 REKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTS 122
Query: 553 RTFIKATDQDAEA--PNNIVRYEIISGNYDNKFSLHPETGV 591
T + A D D + V Y+II GN F++ +
Sbjct: 123 VTKVTAEDADDPTVAGHATVTYQIIKGN--EYFTVDDSGVI 161
Score = 54.3 bits (131), Expect = 2e-08
Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 29/157 (18%)
Query: 269 ILMVLAEEERKDLNEPSPQSSTATIAL-VFDQAINTPPYFDTVQYITHLDENSPQGTALI 327
L D + + V D N P F + + E S GT++
Sbjct: 70 ELTAHI----IDRRNNRSLEPPSKFIIKVSDINDN-APIFVQKIFNGSVPEMSRLGTSVT 124
Query: 328 FAESFHTQVT-----DDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLD 382
+VT D + + + + N F + S + +LD
Sbjct: 125 -------KVTAEDADDPTVAGHATVTYQIIKGNEYFTVDDS--------GVIFTARADLD 169
Query: 383 YERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419
E ++ AK+ + SS A V++ + D
Sbjct: 170 RESQSAYEIIVKAKDALGLTG---ESSTATVIIRLTD 203
Score = 36.5 bits (85), Expect = 0.014
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 10 EVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGD---KGHPRTIKYGLVS 66
+ ++ V D+ D PIF+ + + +TK+TA D D T+ Y ++
Sbjct: 89 KFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIK 148
Query: 67 EGHPMTVFFTINELTG 82
G+ FT+++
Sbjct: 149 -GNEY---FTVDDSGV 160
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 119 bits (300), Expect = 5e-32
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 415 VYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSS 474
+ NDN P F ++Y A + EN+ G ++Q++A D+D + G+I Y G S
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYV--FGAATES 59
Query: 475 L----ELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDN 530
+ LD +G +++ + DREE ++ +F V ARD + L I D NDN
Sbjct: 60 VRRLLRLDETSGWLSVL--HRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDN 117
Query: 531 AP 532
P
Sbjct: 118 VP 119
Score = 66.7 bits (164), Expect = 1e-13
Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 304 PPYFDTVQYITHLDENSPQGTALIFAESFHTQV--TDDNMGKNG----IFSLTLENNNGT 357
P F+ Y L ENS GT ++ Q+ D ++G NG +F E+
Sbjct: 11 SPRFEKSVYEADLAENSAPGTPIL-------QLRAADLDVGVNGQIEYVFGAATESVRRL 63
Query: 358 FEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYI 417
+ + + + +D E L F ++A+ D + +A V++ I
Sbjct: 64 LRLDET--------SGWLSVLHRIDREEVNQLRFTVMAR----DRGQPPKTDKATVVLNI 111
Query: 418 NDVNDNPP 425
D NDN P
Sbjct: 112 KDENDNVP 119
Score = 50.9 bits (123), Expect = 5e-08
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 523 TILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEI--ISGNYD 580
+ NDN+P F ++ +E LA +S + ++A D D N + Y + +
Sbjct: 3 SGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLD-VGVNGQIEYVFGAATESVR 61
Query: 581 NKFSLHPETGV 591
L +G
Sbjct: 62 RLLRLDETSGW 72
Score = 34.0 bits (79), Expect = 0.040
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 13 VVVDDVQDTPPIFINIQPV--IQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHP 70
D P F + V LA N + ++ A D D G I+Y +
Sbjct: 2 SSGSSGNDNSPRFE--KSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATES 59
Query: 71 MTVFFTINELTG 82
+ ++E +G
Sbjct: 60 VRRLLRLDETSG 71
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 122 bits (307), Expect = 5e-32
Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 25/221 (11%)
Query: 312 YITHLDENSPQGTALIFAESFHTQVTDDNMGKNGI-FSLTLENNNGTFEIWPSVVERKAQ 370
L+E + + +D + G + + L+ + F I +
Sbjct: 6 QFFLLEEYTGSDYQYV-----GKLHSDQDRGDGSLKYILSGDGAGDLFIINEN------- 53
Query: 371 FTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTAT 430
T ++ K LD E A + + ++ ++ I+D+NDN P+FT
Sbjct: 54 -TGDIQATKRLDREEKPVYILRAQAVNRRTGRP---VEPESEFIIKIHDINDNEPIFTKD 109
Query: 431 LYTAKIPENATAGEKVVQVKATDVD---TNLGGEILYTAILGYKNSSLELDAHTGDITIA 487
+YTA +PE A G VVQV ATD D +++Y+ + G +++ TG I A
Sbjct: 110 VYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG--QPYFSVESETGIIKTA 167
Query: 488 NGQQFDREEASEYKFQVEARDMQG--LGLRTVVPLQLTILD 526
DRE +Y+ ++A+DM G GL + +T+ D
Sbjct: 168 LL-NMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 108 bits (272), Expect = 4e-27
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 8/159 (5%)
Query: 436 IPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDRE 495
+ E + + V +D D G + Y ++ +TGDI ++ DRE
Sbjct: 10 LEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQAT--KRLDRE 66
Query: 496 EASEYKFQVEARDMQGL-GLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERT 554
E Y + +A + + + + I D+NDN PIF + + + + +
Sbjct: 67 EKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVV 126
Query: 555 FIKATDQDAEA--PNNIVRYEIISGNYDNKFSLHPETGV 591
+ ATD D + V Y I+ G FS+ ETG+
Sbjct: 127 QVTATDADDPTYGNSAKVVYSILQGQ--PYFSVESETGI 163
Score = 52.3 bits (126), Expect = 8e-08
Identities = 31/159 (19%), Positives = 49/159 (30%), Gaps = 31/159 (19%)
Query: 269 ILMVLAEEERKDLNEPSPQSSTATIAL-VFDQAINTPPYFDTVQYITHLDENSPQGTALI 327
IL A + P + + + D N P F Y + E + GT ++
Sbjct: 72 ILRAQA----VNRRTGRPVEPESEFIIKIHDINDN-EPIFTKDVYTATVPEMADVGTFVV 126
Query: 328 FAESFHTQVT-----DDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFT--IRVRNNKN 380
QVT D G + ++ F + T I+ N
Sbjct: 127 -------QVTATDADDPTYGNSAKVVYSILQGQPYFSVESE--------TGIIKT-ALLN 170
Query: 381 LDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419
+D E VI AK++ LS V + + D
Sbjct: 171 MDRENREQYQVVIQAKDMGGQMGG--LSGTTTVNITLTD 207
Score = 38.0 bits (89), Expect = 0.005
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 10 EVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGD---KGHPRTIKYGLVS 66
E ++ + D+ D PIF + + + ++TA D D G+ + Y ++
Sbjct: 91 EFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQ 150
Query: 67 EGHPMTVFFTINELTG 82
G P F++ TG
Sbjct: 151 -GQPY---FSVESETG 162
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 119 bits (301), Expect = 5e-31
Identities = 52/222 (23%), Positives = 80/222 (36%), Gaps = 30/222 (13%)
Query: 318 ENSPQGTALIFAESFHTQVTDDNMGKNGI--FSLTLENNNGTFEIWPSVVERKAQFTIRV 375
+ P + +D G ++ GTF I + T V
Sbjct: 14 QRQPFPRDVG-----KVVDSDRPEGSKFRLTGKGVDQDPKGTFRINEN--------TGSV 60
Query: 376 RNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAK 435
+ LD E T + +D+S L P+ V + D NDN P+F Y
Sbjct: 61 SVTRTLDRETIATYQLYVET----TDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGH 116
Query: 436 IPENATAGEKVVQVKATDVDTNLG--GEILYTAILGYKNSSLE----LDAHTGDI-TIAN 488
+ E + G V+++ A D D + Y + +D GDI T+ +
Sbjct: 117 VMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVS 176
Query: 489 GQQFDRE--EASEYKFQVEARDMQGL--GLRTVVPLQLTILD 526
DRE E +Y+ +EA+DM GL GL + I D
Sbjct: 177 PALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 115 bits (290), Expect = 2e-29
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 9/163 (5%)
Query: 436 IPENATA--GEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFD 493
IPEN V +V +D + + + ++ +TG +++ + D
Sbjct: 10 IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVT--RTLD 67
Query: 494 REEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSER 553
RE + Y+ VE D G L VPL++ ++D NDN PIF + P+ + S +
Sbjct: 68 RETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTV 127
Query: 554 TFIKATDQDAEA-PNNIVRYEIISGNYD----NKFSLHPETGV 591
+ A D D A N ++RY I D N F + PE G
Sbjct: 128 MRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGD 170
Score = 42.0 bits (99), Expect = 2e-04
Identities = 31/163 (19%), Positives = 50/163 (30%), Gaps = 31/163 (19%)
Query: 269 ILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIF 328
L V D + + + +V DQ N P F YI H+ E SP GT ++
Sbjct: 75 QLYVET----TDASGKTLEGPVPLEVIVIDQNDN-RPIFREGPYIGHVMEGSPTGTTVM- 128
Query: 329 AESFHTQVT----DDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTI--------RVR 376
++T DD N + + F I V
Sbjct: 129 ------RMTAFDADDPATDNALLRYNIRQQTPD-------KPSPNMFYIDPEKGDIVTVV 175
Query: 377 NNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419
+ LD E + ++ + L+ A + I+D
Sbjct: 176 SPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 37.8 bits (88), Expect = 0.007
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 10 EVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPR--TIKYGLVSE 67
+ V+V D D PIF + + + ++TA D D ++Y + +
Sbjct: 93 PLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQ 152
Query: 68 --GHPMTVFFTINELTG 82
P F I+ G
Sbjct: 153 TPDKPSPNMFYIDPEKG 169
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 101 bits (255), Expect = 5e-26
Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 415 VYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSS 474
+ NDN PVF IPENA G V+Q+ ATD D EI Y G + +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYI--FGAQVAP 59
Query: 475 -----LELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVN 528
L+ TG IT+ + DREE + +K V A D R V + + DVN
Sbjct: 60 ATKRLFALNNTTGLITVQ--RSLDREETAIHKVTVLASDGSSTPARATV--TINVTDVN 114
Score = 50.2 bits (121), Expect = 8e-08
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 523 TILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEI---ISGNY 579
+ NDN P+F + E + ++ + + ATD D N +RY ++
Sbjct: 3 SGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDAD-IGSNAEIRYIFGAQVAPAT 61
Query: 580 DNKFSLHPETG 590
F+L+ TG
Sbjct: 62 KRLFALNNTTG 72
Score = 46.3 bits (111), Expect = 2e-06
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 28/125 (22%)
Query: 304 PPYFDTVQYITHLDENSPQGTALIFAESFHTQV--TDDNMGKNG-----IFSLTLENNNG 356
P F Q H+ EN+P GT++I Q+ TD ++G N +
Sbjct: 11 RPVFKEGQVEVHIPENAPVGTSVI-------QLHATDADIGSNAEIRYIFGAQVAPATKR 63
Query: 357 TFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVY 416
F + + T + ++LD E T ++A D SS ++A V +
Sbjct: 64 LFALNNT--------TGLITVQRSLDREETAIHKVTVLAS----DGSS--TPARATVTIN 109
Query: 417 INDVN 421
+ DVN
Sbjct: 110 VTDVN 114
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 81.5 bits (202), Expect = 8e-19
Identities = 21/116 (18%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 424 PPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSL-----ELD 478
PP+ +PEN+ G ++ + + Y+ + G ++
Sbjct: 7 PPIN--------LPENSR-GPFPQELVRIRSGRDKNLSLRYS-VTGPGADQPPTGIFIIN 56
Query: 479 AHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIF 534
+G +++ + DRE + + + A D+ G + + + + ++D+NDN P F
Sbjct: 57 PISGQLSVT--KPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 53.8 bits (130), Expect = 3e-09
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 26/120 (21%)
Query: 315 HLDENSPQGTALIFAESFHTQVTDDNMGKNG--IFSLTLENNNGTFEIWPSVVERKAQFT 372
+L ENS G KN +S+T + F
Sbjct: 10 NLPENSR-GPFPQ-----ELVRIRSGRDKNLSLRYSVTGPGADQ---------PPTGIFI 54
Query: 373 I-----RVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVF 427
I ++ K LD E A D + N + + +++ + D+NDN P F
Sbjct: 55 INPISGQLSVTKPLDRELIARFHLRAHAV----DINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 35.7 bits (83), Expect = 0.008
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 43 VLTKITAIDGDKGHPRTIKYGLVSEG--HPMTVFFTINELTG 82
++ I + +++Y + G P T F IN ++G
Sbjct: 19 FPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISG 60
Score = 31.9 bits (73), Expect = 0.15
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 8/65 (12%)
Query: 531 APIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYD----NKFSLH 586
+V P L +SR + N +RY + D F ++
Sbjct: 1 GSDWVIPPIN--LPENSRG-PFPQELVRIRSG-RDKNLSLRYSVTGPGADQPPTGIFIIN 56
Query: 587 PETGV 591
P +G
Sbjct: 57 PISGQ 61
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 81.2 bits (201), Expect = 1e-18
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 438 ENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLE-----LDAHTGDITIANGQQF 492
E+ + + ++ +D+ G +I Y G + + TG++ +
Sbjct: 23 EDLSKKNPIAKIH-SDLAEERGLKITYK-YTGKGITEPPFGIFVFNKDTGELNVT--SIL 78
Query: 493 DREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQ 536
DREE + A D +G + + L++ +LD+NDN P+F Q
Sbjct: 79 DREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 52.7 bits (127), Expect = 1e-08
Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 28/119 (23%)
Query: 318 ENSPQGTALIFAESFHTQV-TDDNMGKNG--IFSLTLENNNGTFEIWPSVVERKAQFTI- 373
E+ + + ++ +D + + T + F
Sbjct: 23 EDLSKKNPI-------AKIHSDLAEERGLKITYKYTGKGITE---------PPFGIFVFN 66
Query: 374 ----RVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFT 428
+ LD E T A D+ N + + + + D+NDN PVFT
Sbjct: 67 KDTGELNVTSILDREETPFFLLTGYAL----DARGNNVEKPLELRIKVLDINDNEPVFT 121
Score = 30.4 bits (69), Expect = 0.58
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 9/63 (14%)
Query: 22 PPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEG--HPMTVFFTINE 79
P+ + + + KI + D + I Y +G P F N+
Sbjct: 15 APVAL---REGEDLSKKN---PIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNK 67
Query: 80 LTG 82
TG
Sbjct: 68 DTG 70
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 67.1 bits (164), Expect = 6e-14
Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 432 YTAKIPENATA--GEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANG 489
IPEN V +V ++ + + ++ +GD+++
Sbjct: 5 TPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVT-- 62
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526
+ DRE + Y+ +VE D+ G + V L ++++D
Sbjct: 63 RPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 32.4 bits (74), Expect = 0.092
Identities = 3/36 (8%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 556 IKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGV 591
+ ++ E + + + + F ++ +G
Sbjct: 24 VIRSEGT-EGAKFRLSGKGVDQDPKGIFRINEISGD 58
Score = 27.4 bits (61), Expect = 5.5
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 44 LTKITAIDGDKGHPRTIKYGLVSEGHPMTVFFTINELTG 82
+ K+ +G +G + V + F INE++G
Sbjct: 21 VGKVIRSEGTEGAKFRLSGKGVDQ--DPKGIFRINEISG 57
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 66.2 bits (162), Expect = 1e-13
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 436 IPENATA--GEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFD 493
IPEN + V +V +D ++ + +++ ++G++++ + D
Sbjct: 9 IPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVT--KALD 66
Query: 494 REEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526
RE Y+ QVE D G + V L++ ++D
Sbjct: 67 REAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 35.0 bits (81), Expect = 0.012
Identities = 3/36 (8%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 556 IKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGV 591
+ +D+ + + + + F ++ +G
Sbjct: 24 VVVSDRIPGS-KIKLYGKGVDQEPKGIFKINENSGE 58
Score = 28.1 bits (63), Expect = 2.6
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 43 VLTKITAIDGDKGHPRTIKYGLVSEGHPMTVFFTINELTG 82
++ ++ D G + V + F INE +G
Sbjct: 20 IVGRVVVSDRIPGSKIKLYGKGVDQ--EPKGIFKINENSG 57
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 66.2 bits (162), Expect = 1e-13
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 424 PPVFTATLYTAKIPEN--ATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHT 481
P+ IPEN V +V +D + + + ++ +T
Sbjct: 6 SPIL--------IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENT 57
Query: 482 GDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526
G +++ + DRE + Y+ VE D G L VPL++ ++D
Sbjct: 58 GSVSVT--RTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 35.4 bits (82), Expect = 0.009
Identities = 4/36 (11%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 556 IKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGV 591
+ +D+ + + + + + F ++ TG
Sbjct: 25 VVDSDRPEGS-KFRLTGKGVDQDPKGTFRINENTGS 59
Score = 28.5 bits (64), Expect = 2.2
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 21 TPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHPMTVFFTINEL 80
PI I P Q P + K+ D +G + V + F INE
Sbjct: 5 VSPILI---PENQRQPFPRD---VGKVVDSDRPEGSKFRLTGKGVDQ--DPKGTFRINEN 56
Query: 81 TG 82
TG
Sbjct: 57 TG 58
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 62.8 bits (153), Expect = 2e-12
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 9/107 (8%)
Query: 425 PVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILG-----YKNSSLELDA 479
P+ + + PEN G + + + G++ Y+ I G ++
Sbjct: 2 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYS-ITGQGADTPPVGVFIIER 59
Query: 480 HTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526
TG + + + DRE + Y A G + + + +T+ D
Sbjct: 60 ETGWLKVT--EPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 35.4 bits (82), Expect = 0.008
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 23 PIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEG--HPMTVFFTINEL 80
P+ + P I N + I +K + Y + +G P F I
Sbjct: 2 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 81 TG 82
TG
Sbjct: 61 TG 62
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 57.4 bits (139), Expect = 1e-10
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 433 TAKIPENATA-GEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQ 491
+ E T V +D+D G I Y +D TGDI Q+
Sbjct: 7 QFFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAI--QR 63
Query: 492 FDREEASEYKFQVEARDM-QGLGLRTVVPLQLTILD 526
DREE S+Y + +A D G + + I D
Sbjct: 64 LDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 36.2 bits (84), Expect = 0.004
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 555 FIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGV 591
++ D + + ++Y + F++ TG
Sbjct: 21 YVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGD 57
Score = 33.9 bits (78), Expect = 0.026
Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 19/104 (18%)
Query: 318 ENSPQGTALIFAESFHTQVTDDNMGKNG--IFSLTLENNNGTFEIWPSVVERKAQFTIRV 375
E + + ++ D +G + L+ E F I + T +
Sbjct: 13 EYTGTDPLYV------GKLHSDMDRGDGSIKYILSGEGAGIVFTIDDT--------TGDI 58
Query: 376 RNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419
+ LD E + A + + + ++ ++ I D
Sbjct: 59 HAIQRLDREERSQYTLRAQALDRRTGRP---MEPESEFIIKIQD 99
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 54.0 bits (130), Expect = 2e-09
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 436 IPENATA-GEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDR 494
+ E + +V TD+D +I Y + +++ TGDI ++ DR
Sbjct: 9 VLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAI--KRLDR 65
Query: 495 EEASEYKFQVEARDMQG-LGLRTVVPLQLTILD 526
EE +EY +A D + L + + D
Sbjct: 66 EEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 35.9 bits (83), Expect = 0.005
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 555 FIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGV 591
+ D + + ++Y + F ++ TG
Sbjct: 20 LVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGD 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 3e-08
Identities = 76/497 (15%), Positives = 139/497 (27%), Gaps = 187/497 (37%)
Query: 13 VVVDDVQDTPPI--FINIQ-PVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGH 69
+V+ +VQ+ F N+ ++ + T+ + T L
Sbjct: 248 LVLLNVQNAKAWNAF-NLSCKIL----------LTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 70 PMTVFFTINELTGPKMSPQVFLLVLMCYSVVANYPVFDISTQMRS---LLIPASVKLGTI 126
+T P + L L + D+ ++ + + +I
Sbjct: 297 TLT----------PDEVKSLLLKYL-------DCRPQDLPREVLTTNPRRL-------SI 332
Query: 127 IYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPG---QVF 183
I ++S +D T+D K + C K ++ E+++ VL P ++F
Sbjct: 333 I-----AESIRDGLATWD---------NWKHVNCDKLTTIIESSL---NVLEPAEYRKMF 375
Query: 184 Q-FRIIVKDTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLSGPK 242
+ HIP +L L+W +
Sbjct: 376 DRLSVFPPSA-------------------------HIP-----TILLS--LIWFDVIKSD 403
Query: 243 NMYLMRE-IRLS------KPYR-ELHTVASGQPVILMVLAEEERKDLNEPSPQSSTAT-- 292
M ++ + + S K + + E + K NE + S
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIP----------SIYLELKVKLENEYALHRSIVDHY 453
Query: 293 -IALVFDQAINTPPYFDTVQYI-THLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLT 350
I FD PPY D QY +H+ H L
Sbjct: 454 NIPKTFDSDDLIPPYLD--QYFYSHI--------------GHH---------------LK 482
Query: 351 LENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQ 410
+ ++ V F LD F + K ++ N S
Sbjct: 483 NIEHPERMTLFRMV------F---------LD------FRF-LEQKIRHDSTAWNASGSI 520
Query: 411 APVL----VYINDVNDNPPVFTATLYTAK--IPENATAGEKVVQVKATDVDTNLGGEILY 464
L Y + DN P + + +P E ++ K TD +L
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLP---KIEENLICSKYTD--------LLR 569
Query: 465 TAILGYKNSSLELDAHT 481
A L ++ ++ +AH
Sbjct: 570 IA-LMAEDEAIFEEAHK 585
Score = 47.2 bits (111), Expect = 2e-05
Identities = 90/649 (13%), Positives = 193/649 (29%), Gaps = 160/649 (24%)
Query: 69 HPMTVFFTINELTGPKMSPQVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVK------ 122
H M F E + + L V + V N+ D+ +S+L +
Sbjct: 5 HHMD--FETGEH---QYQYKDILSVFE-DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 123 ---LGT--IIYRLRASDSD--KDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDR 175
GT + + L + + + + ++ + IK+ + DR
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 176 VLVPGQVFQFRIIVKDTRGDTTTVPTSLTATDAALNINAQFPHIPGVIV----------- 224
+ QVF + + + + L A L + P V++
Sbjct: 119 LYNDNQVF--------AKYNVSRLQPYLKLRQALLELR---PA-KNVLIDGVLGSGKTWV 166
Query: 225 VPEVLGTYLL---------W---RHLSGPKNMYLMRE---IRLSKPYRELHTVASGQPVI 269
+V +Y + W ++ + P+ + M + ++ + +S +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 270 LMVLAEEERKDLNEPSPQSSTATIALVFD-----QAINTPPYFD-------TVQYITHLD 317
+ + E R+ L ++ LV +A N F+ T ++ D
Sbjct: 227 IHSIQAELRRLLKSKPYENCL----LVLLNVQNAKAWN---AFNLSCKILLTTRFKQVTD 279
Query: 318 ENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTF-----EIWPSVV----ERK 368
S T I + +T D + + L+ P + E
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEV--KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 369 AQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFT 428
N K+++ ++ L+ +I +SS N+L P +
Sbjct: 338 RDGLATWDNWKHVNCDK---LTTII-------ESSLNVL---------------EPAEYR 372
Query: 429 ATLYT--AKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITI 486
++ + P +A ++ + DV + ++ +K S +E I+I
Sbjct: 373 K-MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL---HKYSLVEKQPKESTISI 428
Query: 487 ANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDN---------------- 530
+ + E ++ + + + I D
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 531 ------APIFVQTPFEFV---LASDSRNFSERTFIKATDQDAEA-----PNNIVRYEIIS 576
+F+ F F+ + DS ++ I T Q + +N +YE +
Sbjct: 488 ERMTLFRMVFLD--FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 577 GNYDNKFSLHPETGV---PHKWSTTQVRIYPPDSAVRNIKFLVPHSQAQ 622
+ F E + + ++ + D A+ F H Q Q
Sbjct: 546 NAILD-FLPKIEENLICSKYT-DLLRIALMAEDEAI----FEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 1e-07
Identities = 68/410 (16%), Positives = 137/410 (33%), Gaps = 126/410 (30%)
Query: 17 DVQDTPPIFINIQPVIQLAPNLTMNDVLTKI--TAIDGDKGHPRTIKYGLVS-----EGH 69
D+ T + + +I+ + L+++ T +D +K + + ++
Sbjct: 175 DLYQTYHVLV--GDLIK-----FSAETLSELIRTTLDAEKVFTQGLN--ILEWLENPSNT 225
Query: 70 PMTVFFTINELTGPKMS-PQVFLLVLMCYSVVANYPVFDIST-QMRSLLIPASVKLGTII 127
P + L+ P +S P + ++ L Y V A + + ++RS L A+ ++
Sbjct: 226 PDKDYL----LSIP-ISCPLIGVIQLAHYVVTAK--LLGFTPGELRSYLKGATGHSQGLV 278
Query: 128 --YRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSF---CEA-NVYLDRVLVPGQ 181
+ +DS + + F + + + F Y + L P
Sbjct: 279 TAVAIAETDSWESF---FVSVRK---AITV---------LFFIGVRCYEAYPNTSLPPS- 322
Query: 182 VFQFRIIVKDTRGDTTTVPTS-LTATDAALN--------INAQFP-----HI-----PGV 222
I++D+ + VP+ L+ ++ N+ P I
Sbjct: 323 ------ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 223 IVV---PEVL-GTYLLWRHLSGPKNM------YLMREIRLSK-------PYRELHT--VA 263
+VV P+ L G L R P + + R+++ S P+ H+ +
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF---HSHLLV 433
Query: 264 SGQPVILMVLAEEE----RKDLNEP--------SPQSSTATIAL-VFDQAINTPPYFDTV 310
+I L + KD+ P + + +I+ + D I P ++T
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 311 QY--ITH-LD-------------ENSPQGT--ALIFAESFHTQVTDDNMG 342
TH LD + GT +I A + DD+ G
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN-PDDDYG 542
Score = 53.9 bits (129), Expect = 1e-07
Identities = 82/506 (16%), Positives = 142/506 (28%), Gaps = 167/506 (33%)
Query: 249 EIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPP--- 305
E L P +AS L E+ K L EP T D TP
Sbjct: 17 EHVLLVPT-ASFFIAS-------QLQEQFNKILPEP-------TEGFAADDEPTTPAELV 61
Query: 306 -YFDTVQYITHLDENSPQGT-----ALIFAESFHTQVTDDNMGKNGIFSL--TLENNNGT 357
F + Y++ L E S G L E F + N I +L L N T
Sbjct: 62 GKF--LGYVSSLVEPSKVGQFDQVLNLCLTE-FENCY----LEGNDIHALAAKLLQENDT 114
Query: 358 FEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSS-------- 409
K + I+ +Y R ++ + S+S L +
Sbjct: 115 -------TLVKTKELIK-------NYITARIMA----KRPFDKKSNSALFRAVGEGNAQL 156
Query: 410 ------QAPVLVYINDVND-----NPPV------FTATLYT-AKIPENATAG-EKVVQVK 450
Q Y ++ D + V TL + +A + + +
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 451 A--TDVDTNLGGEILYTA--------------------ILGYKNSSLE-----LDAHTGD 483
+ + L + +LG+ L H+
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 484 ITIA-------NGQQFDR--EEASEYKFQVEARDMQGLGLRTVVPLQLTI-LDVNDNAPI 533
+ A + + F +A F + R + ++ P L L+ N+ P
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP- 335
Query: 534 FVQTPFEFVLASDSRNFSERTFIKATDQDAE-----------APNNIVRYEIISGN---- 578
+P +++ ++ + ++ T+ N+V +SG
Sbjct: 336 ---SPM-LSISNLTQEQVQD-YVNKTNSHLPAGKQVEISLVNGAKNLV----VSGPPQSL 386
Query: 579 YDNKFSLHPETGVPHKWSTTQVRIYPPDSAVRNIK----FL---VP-HS----------Q 620
Y +L Q RI P S R +K FL P HS
Sbjct: 387 YGLNLTLRKAKAPSGL---DQSRI--PFSE-RKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 621 AQLERKQLEDILSEMSGGRVSVVNTR 646
L + + ++ ++ V +T
Sbjct: 441 KDLVKNNVSFNAKDI---QIPVYDTF 463
Score = 48.5 bits (115), Expect = 7e-06
Identities = 77/480 (16%), Positives = 146/480 (30%), Gaps = 151/480 (31%)
Query: 97 YSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSDKDYPLTFDATDF-------- 148
Y Y V + L+ ++ L +I D++K + + ++
Sbjct: 177 YQT---YHVL-----VGDLIKFSAETLSELIRT--TLDAEKVFTQGLNILEWLENPSNTP 226
Query: 149 -GSYVVKIK-SLPCSKNSSFCEANVYLDRVL--VPGQVFQFRIIVKDTRGDTTTVPTSLT 204
Y++ I S P V ++L PG++ + +G T +T
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTA-KLLGFTPGELRSY------LKGATGHSQGLVT 279
Query: 205 A-------TDAALNINAQFPHIPGVIVVPEVLGTYLLW---R-HLSGPKNMYLMREIRLS 253
A + + ++ + + + T L + R + + P + S
Sbjct: 280 AVAIAETDSWESFFVSVR-----------KAI-TVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 254 KPYRELHTVASGQP-----VILMVLAEEER--KDLNEPSPQSSTATIALVFDQAINTPPY 306
E G P + + + + N P I+LV N
Sbjct: 328 LENNE------GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV-----NGAKN 376
Query: 307 FDTVQYITHLDENSPQGTALI-FAESFHTQVTDDNMGKNGI-FSLTLENNNGTFEIWPSV 364
V ++ PQ +L + + ++ I FS
Sbjct: 377 L--V--VS----GPPQ--SLYGLNLTLRKAKAPSGLDQSRIPFS---------------- 410
Query: 365 VERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSS---SNLLSSQAPVLVYINDVN 421
ERK +F+ R F+ V +S S+LL + ++ D+
Sbjct: 411 -ERKLKFSNR----------------FLPV-------ASPFHSHLLVPASDLIN--KDLV 444
Query: 422 DNPPVFTAT-LYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKN--SSLELD 478
N F A + +IP T ++V + + + I+ + ++ +
Sbjct: 445 KNNVSFNAKDI---QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV----KWETTTQFK 497
Query: 479 A-HTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPI-FVQ 536
A H D F AS R+ G G+R +V LD+N + F Q
Sbjct: 498 ATHILD--------FGPGGASGLGVLT-HRNKDGTGVRVIVA---GTLDINPDDDYGFKQ 545
Score = 34.3 bits (78), Expect = 0.15
Identities = 48/230 (20%), Positives = 75/230 (32%), Gaps = 65/230 (28%)
Query: 338 DDNMGKNGIFSLT--LENNNGTFEIWPSVVERKAQFTIRVRNN-KNLDYERTR--TLSFV 392
D++ FS+ + NN I K + R+R N + +E L
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFG--GEKGK---RIRENYSAMIFETIVDGKLKTE 1704
Query: 393 IVAKEISSDSSSNLLSSQAPVLVYINDVNDN--PPVFT---ATLYTAK----IPENAT-A 442
+ KEI+ S+S S+ +L P + A K IP +AT A
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLL----SATQFTQPALTLMEKAAFEDLKSKGLIPADATFA 1760
Query: 443 GEKVVQVKATDVDTNLGGEILYTAILGYKNS-SLELDA----HT-GDITIANGQQFDREE 496
G + GE Y A+ + S+E G +T+ D
Sbjct: 1761 GHSL-------------GE--YAALASLADVMSIE-SLVEVVFYRG-MTMQVAVPRDELG 1803
Query: 497 ASEY------------KFQVEARD--MQGLGLRTVVPLQLTILDVNDNAP 532
S Y F EA ++ +G RT +++ VN N
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI----VNYNVE 1849
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 37.6 bits (88), Expect = 0.002
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 23/71 (32%)
Query: 475 LELDAHTGDITIANGQQFDREE---ASEY---KFQVEARDMQGLGLRTVVPLQL-----T 523
L+L+ +G++ + ++ DREE ++ FQV + P+Q
Sbjct: 57 LQLEQKSGNLLLK--EKLDREELCGSTNPCILHFQVLLKS----------PVQFIQGEIQ 104
Query: 524 ILDVNDNAPIF 534
+ DVND+AP F
Sbjct: 105 LQDVNDHAPEF 115
Score = 29.5 bits (67), Expect = 1.3
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 413 VLVYINDVNDNPPVF 427
+ + DVND+ P F
Sbjct: 101 GEIQLQDVNDHAPEF 115
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.075
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 10/30 (33%)
Query: 597 TTQVRIYPPDSAVRNIKFLVP--HSQAQLE 624
+++Y DSA P +A +E
Sbjct: 26 QASLKLYADDSA--------PALAIKATME 47
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell
adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Length = 159
Score = 32.1 bits (72), Expect = 0.26
Identities = 17/118 (14%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Query: 402 SSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGE 461
SS ++ + ++ F +Y+A +P++ G+ ++ VK ++ + +
Sbjct: 12 SSGHIDDDDKHMEA-SGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRK--RK 68
Query: 462 ILYTAILGYKNSSLELDAHT-GDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVV 518
+ Y + + + G + E+A F + A+D + V
Sbjct: 69 VQYES-----SEPADFKVDEDGTVYAVRSFPLTAEQAK---FLIYAQDKETQEKWQVA 118
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 33.0 bits (74), Expect = 0.35
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 6/103 (5%)
Query: 306 YFDTVQYIT---HLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWP 362
TV+ IT + T L E+ +G FSL + + N T +
Sbjct: 370 ILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQ--HGQFSLAVVSLNIT-SLGL 426
Query: 363 SVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSN 405
++ + + + NKNL Y T + + SN
Sbjct: 427 RSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISN 469
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 32.5 bits (75), Expect = 0.45
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 443 GEKVVQVKATDVDTNLGGE 461
GEK +V AT+ DT+LGGE
Sbjct: 212 GEKTFEVLATNGDTHLGGE 230
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 31.8 bits (73), Expect = 0.81
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 443 GEKVVQVKATDVDTNLGGE 461
GEK +V AT+ DT+LGGE
Sbjct: 212 GEKTFEVLATNGDTHLGGE 230
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 31.4 bits (72), Expect = 1.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 443 GEKVVQVKATDVDTNLGGE 461
G+ V +VKAT D +LGG+
Sbjct: 181 GDGVFEVKATAGDNHLGGD 199
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 29.1 bits (66), Expect = 1.5
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 23/67 (34%)
Query: 475 LELDAHTGDITIANGQQFDREE---ASE---YKFQVEARDMQGLGLRTVVPLQL-----T 523
LE++ G + + + DREE S +V PLQ+
Sbjct: 49 LEVNLQNGILFVN--SRIDREELCGRSAECSIHLEVIVDR----------PLQVFHVEVE 96
Query: 524 ILDVNDN 530
+ D+NDN
Sbjct: 97 VRDINDN 103
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 30.6 bits (70), Expect = 2.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 441 TAGEKVVQVKATDVDTNLGGE 461
T + +VK+T DT+LGGE
Sbjct: 211 TIAAGIFEVKSTAGDTHLGGE 231
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 29.8 bits (68), Expect = 2.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 441 TAGEKVVQVKATDVDTNLGGE 461
+ V +V+AT DT+LGGE
Sbjct: 224 SIENGVFEVQATSGDTHLGGE 244
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 29.8 bits (68), Expect = 2.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 441 TAGEKVVQVKATDVDTNLGGE 461
T + + +VK+T DT+LGGE
Sbjct: 232 TIEDGIFEVKSTAGDTHLGGE 252
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 29.5 bits (67), Expect = 3.5
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 590 GVP-------HKWSTTQVRIYPPDSAVRNIKFLVPHSQAQLERKQLE---DILSEMSGGR 639
GVP ++ + AVR L + +E K+ E DI+S ++ G
Sbjct: 166 GVPPQRRAELTTLLAGIAKLDDREGAVRAQDDLFGYVAGLVEHKRAEPGPDIISRLNDGE 225
Query: 640 VS 641
++
Sbjct: 226 LT 227
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling
protein; NMR {Homo sapiens} SCOP: d.245.1.1
Length = 102
Score = 27.5 bits (61), Expect = 4.4
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 236 RHLSGPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQ 287
R P N + IR + EL +A G V L + E+ +D + P+
Sbjct: 31 RSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDM---EDHRDEDFVKPK 79
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 28.8 bits (65), Expect = 7.4
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 441 TAGEKVVQVKATDVDTNLGGE 461
+ ++V T D + GG
Sbjct: 215 AFKKGQLKVLGTACDKHFGGR 235
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 28.4 bits (64), Expect = 8.7
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 162 KNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDT 196
+N + + ++ L+R++ P +V QFR++ D R
Sbjct: 41 QNPKYRQMSL-LERLVEPERVIQFRVVWVDDRNQI 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.267 0.0821 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,728,354
Number of extensions: 594829
Number of successful extensions: 1487
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1257
Number of HSP's successfully gapped: 160
Length of query: 653
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 553
Effective length of database: 3,909,693
Effective search space: 2162060229
Effective search space used: 2162060229
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)