RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1887
(653 letters)
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 64.3 bits (155), Expect = 3e-13
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 421 NDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGE--ILYTAILGYKNSSLELD 478
NDN P FT ++ + E G +V+ V ATD D N+ +L +IL +
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 479 AHTGDITIAN----GQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526
T + G DRE+ EY V+A D++G GL + I D
Sbjct: 62 LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113
Score = 43.1 bits (100), Expect = 8e-06
Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 7/116 (6%)
Query: 304 PPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPS 363
P F + + E GT T D+ NG+ S ++ + I
Sbjct: 5 RPKFTQDVFRGSVREGVQPGT--QVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNL 62
Query: 364 VVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419
+ I LD E+ + + A +D LS + ++ I D
Sbjct: 63 FTINRETGVIS-LIGTGLDREKFPEYTLTVQA----TDLEGAGLSVEGKAIIQITD 113
Score = 33.1 bits (74), Expect = 0.028
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 528 NDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQD--AEAPNNIVRYEIISGNYDNKFSL 585
NDN P F Q F + + ++ + ATD+D ++ N ++ Y I+ + +
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 586 HPETGVPHKWSTTQVRIYPPDSA 608
+ +
Sbjct: 62 LFTINRETGVISLIGTGLDREKF 84
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 64.3 bits (155), Expect = 3e-13
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 7/113 (6%)
Query: 421 NDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNS---SLEL 477
NDN P+F YTA +PEN G +V ++ TD+D + ++
Sbjct: 2 NDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60
Query: 478 DAHTGDITIANGQQFDREEASEYKFQVEARDMQGLG---LRTVVPLQLTILDV 527
D + + + D E +Y Q+ + + + + +T+ DV
Sbjct: 61 DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113
Score = 36.5 bits (83), Expect = 0.002
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 1/89 (1%)
Query: 528 NDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHP 587
NDNAPIF + ++ + E + TD D I N F++
Sbjct: 2 NDNAPIFDPKTYTALVPENEIG-FEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60
Query: 588 ETGVPHKWSTTQVRIYPPDSAVRNIKFLV 616
+ TT + ++ V
Sbjct: 61 DPESNQGILTTAKGLDFELRKQYVLQITV 89
Score = 36.5 bits (83), Expect = 0.002
Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 8/117 (6%)
Query: 304 PPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPS 363
P FD Y + EN G D + + +
Sbjct: 5 APIFDPKTYTALVPENEI-GF------EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFN 57
Query: 364 VVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDV 420
+ + K LD+E + I + + S L +S A V V + DV
Sbjct: 58 ITTDPESNQGILTTAKGLDFELRKQYVLQITVEN-AEPFSVPLPTSTATVTVTVEDV 113
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 59.0 bits (141), Expect = 2e-11
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 421 NDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAIL------GYKNSS 474
NDN P F ++ +PE + G V+ V A D D + + +
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 475 LELDAHTGDITIANGQQFDREEASEYKFQVEARDMQG---LGLRTVVPLQLTILD 526
++ TGDI RE+ +Y ++A DM+G GL +T+ D
Sbjct: 61 FTINNETGDIITVAAGLD-REKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
Score = 38.5 bits (88), Expect = 3e-04
Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 11/119 (9%)
Query: 304 PPYFDTVQYITHLDENSPQGT--ALIFAESFHTQVTDDNMGKNGIFSLTLENNN-GTFEI 360
P F + + E S GT + A + M + I S + F I
Sbjct: 4 RPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTI 63
Query: 361 WPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419
+ + LD E+ + + +I A ++ + + LS+ A ++ + D
Sbjct: 64 NN-------ETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYG-LSNTATAVITVTD 114
Score = 33.5 bits (75), Expect = 0.018
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 528 NDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAE-APNNIVRYEIISGNYDNKFSLH 586
NDN P F+ + + S+ + + A D D A N ++RY I+S
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 587 PETGVPHKWSTTQVRIYPPD 606
T +
Sbjct: 61 FTINNETGDIITVAAGLDRE 80
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 57.3 bits (137), Expect = 8e-11
Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 422 DNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHT 481
+ P F + + E+ + GEK++ + A D D ++ I L ++
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKL-SYFIGNDPARWLTVNKDN 59
Query: 482 GDITIANGQQFDRE----EASEYKFQVEARDMQGLGLRTVVPLQLTILDV 527
G +T DRE + + Y + D L L +LDV
Sbjct: 60 GIVTGNG--NLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107
Score = 46.1 bits (108), Expect = 7e-07
Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 14/120 (11%)
Query: 302 NTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFS-LTLENNNGTFEI 360
N P+F + E+ +G +I D + + S + +
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKII-----SLVAQDPDKQQIQKLSYFIGNDPARWLTV 55
Query: 361 WPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDV 420
V N NLD E + + +D ++ + +++++ DV
Sbjct: 56 NKD--------NGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107
Score = 34.2 bits (77), Expect = 0.011
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 529 DNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPE 588
+ AP FV ++ D I QD + I + +++ +
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGE--KIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKD 58
Query: 589 TG 590
G
Sbjct: 59 NG 60
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 56.9 bits (136), Expect = 2e-10
Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 10/125 (8%)
Query: 419 DVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELD 478
++ F +Y+A +P++ G+ ++ VK ++ + + + +K
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFK------- 57
Query: 479 AHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTP 538
D T+ + F + KF + A+D + V + L+ P+
Sbjct: 58 -VDEDGTVYAVRSFPLTA-EQAKFLIYAQDK-ETQEKWQVAVNLSREPTLTEEPMKEPHE 114
Query: 539 FEFVL 543
E ++
Sbjct: 115 IEEIV 119
Score = 34.6 bits (78), Expect = 0.011
Identities = 15/146 (10%), Positives = 35/146 (23%), Gaps = 24/146 (16%)
Query: 304 PPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPS 363
F Y L ++ +G L+ + + ++
Sbjct: 10 KTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEP---------------- 53
Query: 364 VVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDN 423
+ K V ++ + F+I A++ + Q V +
Sbjct: 54 -ADFKVDEDGTVYAVRSFPLTAEQA-KFLIYAQDKETQE-----KWQVAVNLSREPTLTE 106
Query: 424 PPVFTA-TLYTAKIPENATAGEKVVQ 448
P+ + P +Q
Sbjct: 107 EPMKEPHEIEEIVFPRQLAKHSGALQ 132
Score = 28.4 bits (62), Expect = 1.3
Identities = 7/56 (12%), Positives = 16/56 (28%)
Query: 526 DVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDN 581
++ F + + VL D +K ++ + + E D
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDE 60
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 55.5 bits (132), Expect = 3e-10
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 421 NDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGG-------EILYTAILGYKNS 473
NDN P FT ++ + E A G V++V ATD D ++ I+ +
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 474 SLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526
++ TG I++ DRE Y V+A D+QG GL T +T+ D
Sbjct: 61 MFTVNRDTGVISV-LTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112
Score = 41.6 bits (96), Expect = 2e-05
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 7/116 (6%)
Query: 304 PPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPS 363
P F + + E + GT+++ + + N + T+ + +
Sbjct: 4 RPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTY--NAAIAYTIVSQDPELPHKNM 61
Query: 364 VVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419
+ I V + LD E T + V+ A +D LS+ A ++ + D
Sbjct: 62 FTVNRDTGVISVLTS-GLDRESYPTYTLVVQA----ADLQGEGLSTTAKAVITVKD 112
Score = 37.0 bits (84), Expect = 0.001
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 528 NDNAPIFVQTPFEFVLASDSRNFSERTFIKA--TDQDAEAPNNIVRYEIISGNYDNKFSL 585
NDN P F Q FE +A + + + A D D N + Y I+S + +
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 586 HPETGVPHKWSTTQVRIYPPDS 607
+ +S
Sbjct: 61 MFTVNRDTGVISVLTSGLDRES 82
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 54.3 bits (129), Expect = 8e-10
Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 8/112 (7%)
Query: 421 NDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAH 480
NDN PV + ++T + + + +D D ++ + + + +
Sbjct: 1 NDNGPVPSPRVFT--MCDQNPEP---QVLTISDADIPPNTYPYKVSLSHGSDLTWKAELD 55
Query: 481 TGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAP 532
+ T + + +Y V D Q TVV T+ A
Sbjct: 56 S-KGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVV--NATVCSCEGKAI 104
Score = 28.5 bits (62), Expect = 0.95
Identities = 10/68 (14%), Positives = 17/68 (25%), Gaps = 5/68 (7%)
Query: 528 NDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHP 587
NDN P+ F E + +D D + + G+ +
Sbjct: 1 NDNGPVPSPRVFTM-----CDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELD 55
Query: 588 ETGVPHKW 595
G
Sbjct: 56 SKGTSMLL 63
Score = 28.1 bits (61), Expect = 1.1
Identities = 9/123 (7%), Positives = 27/123 (21%), Gaps = 21/123 (17%)
Query: 304 PPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPS 363
P + + + +P+ T D + ++L + +
Sbjct: 4 GPVPS--PRVFTMCDQNPEPQ-------VLTISDADIPPNTYPYKVSLSHGSDLTWKAEL 54
Query: 364 VVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDN 423
+ + + K DY ++ + + V +
Sbjct: 55 DSKGTSMLLSPTQQLKKGDYSIY------VLLSD------AQNNPQLTVVNATVCSCEGK 102
Query: 424 PPV 426
Sbjct: 103 AIK 105
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 45.5 bits (107), Expect = 8e-07
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 431 LYTAKIPENATAGEKVVQVKATDVDTNLGGEILYT----AILGYKNSSLELDAHTGDITI 486
+ K+ EN G ++ + + ++ Y+ ++ TG +
Sbjct: 4 IPPIKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWML- 61
Query: 487 ANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526
+ DREE +Y A G + + + + ++D
Sbjct: 62 -VTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100
Score = 29.7 bits (66), Expect = 0.29
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 43 VLTKITAIDGDKGHPRTIKYGLVSEGHPMTVF--FTINELTG 82
++ I +K + Y + +G F I TG
Sbjct: 17 FPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETG 58
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 44.7 bits (105), Expect = 2e-06
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 7/106 (6%)
Query: 425 PVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYT----AILGYKNSSLELDAH 480
P+ + + PEN G + + + G++ Y+ ++
Sbjct: 1 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 59
Query: 481 TGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526
TG + + DRE + Y A G + + + +T+ D
Sbjct: 60 TGWLK--VTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 103
Score = 30.1 bits (67), Expect = 0.24
Identities = 8/46 (17%), Positives = 12/46 (26%), Gaps = 5/46 (10%)
Query: 554 TFIKATDQDAEAPNNIVRYEIISGNYD----NKFSLHPETGVPHKW 595
+ + + V Y I D F + ETG
Sbjct: 22 KNLVQIKSN-KDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVT 66
Score = 28.9 bits (64), Expect = 0.59
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 23 PIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHPMTVF--FTINEL 80
P+ + P I N + I +K + Y + +G F I
Sbjct: 1 PLGSWVIPPISCPEN-EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 59
Query: 81 TG 82
TG
Sbjct: 60 TG 61
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 43.7 bits (102), Expect = 4e-06
Identities = 13/98 (13%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 433 TAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLE----LDAHTGDITIAN 488
+PEN+ G ++ + + Y+ + ++ +G ++
Sbjct: 8 PINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLS--V 64
Query: 489 GQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526
+ DRE + + + A D+ G + + + + ++D
Sbjct: 65 TKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102
>d1ss6a_ d.245.1.1 (A:) NSFL1 (p97 ATPase) cofactor p47, SEP domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 26.7 bits (59), Expect = 3.4
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 236 RHLSGPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSS 289
R P N + IR + EL +A G V L + E+ +D + P+ +
Sbjct: 31 RSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDM---EDHRDEDFVKPKGA 81
>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1.
{Bacillus circulans [TaxId: 1397]}
Length = 88
Score = 26.3 bits (57), Expect = 3.7
Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 130 LRASDSDKDY-PLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRII 188
L ++ L++ A+ V + ++ L + F +
Sbjct: 10 LASTAQTTSSITLSWTASTDNVGVTGYDVYNGTALATTVTGTTATISGLAADTSYTFTVK 69
Query: 189 VKDTRGDTTTVPTSLTAT 206
KD G+ + +++
Sbjct: 70 AKDAAGNVSAASNAVSVK 87
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 27.2 bits (60), Expect = 4.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 439 NATAGEKVVQVKATDVDTNLGGEILYTAILGY 470
+ GEK +V AT+ DT+LGGE + ++ Y
Sbjct: 23 DEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,313,767
Number of extensions: 107134
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 34
Length of query: 653
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 562
Effective length of database: 1,158,166
Effective search space: 650889292
Effective search space used: 650889292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)