BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1888
(386 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DWG|A Chain A, Run Domain Of Rap2 Interacting Protein X, Crystallized In
P2(1)2(1)2(1) Space Group
pdb|2DWG|B Chain B, Run Domain Of Rap2 Interacting Protein X, Crystallized In
P2(1)2(1)2(1) Space Group
Length = 180
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 91/171 (53%), Positives = 124/171 (72%), Gaps = 1/171 (0%)
Query: 65 ERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHXXXXXXXXXXXXX 124
ER NL+N++KL +K LIE++ GR LDSD+ PLQ FF+V+EH L+H
Sbjct: 11 ERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNK 70
Query: 125 ELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHR 184
W L+LVEKL PEA++ITASV+DLP +KT +GR RAWLRLALMQKKL++Y++ L++ +
Sbjct: 71 SFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKK 130
Query: 185 DDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVID 235
++L E++E +AL+M +E +I G L+ LNVID N C+K EDLD Q GVID
Sbjct: 131 -ELLSEFYEVNALMMEEEGAIIAGLLVGLNVIDANFCMKGEDLDSQVGVID 180
>pdb|2CXF|A Chain A, Run Domain Of Rap2 Interacting Protein X, Crystallized In
C2 Space Group
pdb|2CXL|A Chain A, Run Domain Of Rap2 Interacting Protein X, Crystallized In
I422 Space Group
Length = 190
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 93/179 (51%), Positives = 121/179 (67%), Gaps = 1/179 (0%)
Query: 65 ERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHXXXXXXXXXXXXX 124
ER NL N +KL +K LIE++ GR LDSD+ PLQ FF+V EH L+H
Sbjct: 11 ERXNLXNXAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVXEHCLKHGLKAKKTFLGQNK 70
Query: 125 ELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHR 184
W L+LVEKL PEA++ITASV+DLP +KT +GR RAWLRLAL QKKL++Y + L++ +
Sbjct: 71 SFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGRGRAWLRLALXQKKLSEYXKALINKK 130
Query: 185 DDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDFSLYLRSA 243
++L E++E +AL +E +I G L+ LNVID N C K EDLD Q GVIDFS YL+
Sbjct: 131 -ELLSEFYEVNALXXEEEGAIIAGLLVGLNVIDANFCXKGEDLDSQVGVIDFSXYLKDG 188
>pdb|2DWK|A Chain A, Crystal Structure Of The Run Domain Of Mouse Rap2
Interacting Protein X
Length = 180
Score = 185 bits (469), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 116/171 (67%), Gaps = 1/171 (0%)
Query: 65 ERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHXXXXXXXXXXXXX 124
ER NL N +KL +K LIE++ GR LDSD+ PLQ FF+V EH L+H
Sbjct: 11 ERXNLXNXAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVXEHCLKHGLKAKKTFLGQNK 70
Query: 125 ELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHR 184
W L+LVEKL PEA++ITASV+DLP +KT +GR RAWLRLAL QKKL++Y + L++ +
Sbjct: 71 SFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGRGRAWLRLALXQKKLSEYXKALINKK 130
Query: 185 DDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVID 235
++L E++E +AL +E +I G L+ LNVID N C K EDLD Q GVID
Sbjct: 131 -ELLSEFYEVNALXXEEEGAIIAGLLVGLNVIDANFCXKGEDLDSQVGVID 180
>pdb|3CWZ|B Chain B, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 384
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 147 VRDLPTVKTHMGRARAWLRLALMQKKLADYL-QVLVDHRDDILVEYFETDALLMS-DEAI 204
++++ +KT +G+ARAW+RL++ +K L+ +L Q+L DH ++ + ++ A L DE
Sbjct: 165 IQNIGEIKTDVGKARAWVRLSMEKKLLSRHLKQLLSDH--ELTKKLYKRYAFLRCDDEKE 222
Query: 205 VILGKLLSLNVID 217
L LLS N +D
Sbjct: 223 QFLYHLLSFNAVD 235
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 226 DLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGN-- 283
+LD Q+ V++F + + + + V +V N+ L ++ K ++L LN + N
Sbjct: 315 ELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKH 374
Query: 284 LQTQVESLTTTNALMREDLSIA-EKNLRILIQENENLKNQLANSSQHTSNLSV---HEVG 339
LQ +E L T + SI ++ L+ L +EN+ ++ + ++ +++ H++
Sbjct: 375 LQDLMEGL-TAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQIA 433
Query: 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIK 373
E +M L+ + K++ + + RR L+ K
Sbjct: 434 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK 467
>pdb|1R49|A Chain A, Human Topoisomerase I (Topo70) Double Mutant K532rY723F
Length = 592
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 226 DLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGN-- 283
+LD Q+ V++F R + + + V +V N+ L ++ K ++L LN + N
Sbjct: 344 ELDGQEYVVEFDFLGRDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKH 403
Query: 284 LQTQVESLTTTNALMREDLSIA-EKNLRILIQENENLKNQLANSSQHTSNLSV---HEVG 339
LQ +E L T + SI ++ L+ L +EN+ ++ + ++ +++ H+
Sbjct: 404 LQDLMEGL-TAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRA 462
Query: 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIK 373
E +M L+ + K++ + + RR L+ K
Sbjct: 463 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK 496
>pdb|1A35|A Chain A, Human Topoisomerase IDNA COMPLEX
pdb|1A36|A Chain A, Topoisomerase IDNA COMPLEX
Length = 591
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 226 DLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGN-- 283
+LD Q+ V++F + + + + V +V N+ L ++ K ++L LN + N
Sbjct: 343 ELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKH 402
Query: 284 LQTQVESLTTTNALMREDLSIA-EKNLRILIQENENLKNQLANSSQHTSNLSV---HEVG 339
LQ +E L T + SI ++ L+ L +EN+ ++ + ++ +++ H+
Sbjct: 403 LQDLMEGL-TAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRA 461
Query: 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIK 373
E +M L+ + K++ + + RR L+ K
Sbjct: 462 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK 495
>pdb|1NH3|A Chain A, Human Topoisomerase I Ara-C Complex
Length = 563
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 226 DLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGN-- 283
+LD Q+ V++F + + + + V +V N+ L ++ K ++L LN + N
Sbjct: 315 ELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKH 374
Query: 284 LQTQVESLTTTNALMREDLSIA-EKNLRILIQENENLKNQLANSSQHTSNLSV---HEVG 339
LQ +E L T + SI ++ L+ L +EN+ ++ + ++ +++ H+
Sbjct: 375 LQDLMEGL-TAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRA 433
Query: 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIK 373
E +M L+ + K++ + + RR L+ K
Sbjct: 434 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK 467
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 226 DLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGN-- 283
+LD Q+ V++F + + + + V +V N+ L ++ K ++L LN + N
Sbjct: 316 ELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKH 375
Query: 284 LQTQVESLTTTNALMREDLSIA-EKNLRILIQENENLKNQLANSSQHTSNLSV---HEVG 339
LQ +E L T + SI ++ L+ L +EN+ ++ + ++ +++ H+
Sbjct: 376 LQDLMEGL-TAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRA 434
Query: 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIK 373
E +M L+ + K++ + + RR L+ K
Sbjct: 435 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK 468
>pdb|1K4S|A Chain A, Human Dna Topoisomerase I In Covalent Complex With A 22
Base Pair Dna Duplex
pdb|1K4T|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Poison Topotecan And Covalent Complex With A 22 Base
Pair Dna Duplex
pdb|1SC7|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indenoisoquinoline Mj-Ii-38 And Covalent Complex With A
22 Base Pair Dna Duplex
pdb|1T8I|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Poison Camptothecin And Covalent Complex With A 22 Base
Pair Dna Duplex
pdb|1TL8|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indenoisoquinoline Ai-Iii-52 And Covalent Complex With A
22 Base Pair Dna Duplex
Length = 592
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 226 DLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGN-- 283
+LD Q+ V++F + + + + V +V N+ L ++ K ++L LN + N
Sbjct: 344 ELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKH 403
Query: 284 LQTQVESLTTTNALMREDLSIA-EKNLRILIQENENLKNQLANSSQHTSNLSV---HEVG 339
LQ +E L T + SI ++ L+ L +EN+ ++ + ++ +++ H+
Sbjct: 404 LQDLMEGL-TAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRA 462
Query: 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIK 373
E +M L+ + K++ + + RR L+ K
Sbjct: 463 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK 496
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 591
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 226 DLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGN-- 283
+LD Q+ V++F + + + + V +V N+ L ++ K ++L LN + N
Sbjct: 343 ELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKH 402
Query: 284 LQTQVESLTTTNALMREDLSIA-EKNLRILIQENENLKNQLANSSQHTSNLSV---HEVG 339
LQ +E L T + SI ++ L+ L +EN+ ++ + ++ +++ H+
Sbjct: 403 LQDLMEGL-TAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRA 461
Query: 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIK 373
E +M L+ + K++ + + RR L+ K
Sbjct: 462 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK 495
>pdb|1SEU|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indolocarbazole Sa315f And Covalent Complex With A 22
Base Pair Dna Duplex
Length = 592
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 226 DLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGN-- 283
+LD Q+ V++F + + + + V +V N+ L ++ K ++L LN + N
Sbjct: 344 ELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKH 403
Query: 284 LQTQVESLTTTNALMREDLSIA-EKNLRILIQENENLKNQLANSSQHTSNLSV---HEVG 339
LQ +E L T + SI ++ L+ L +EN+ ++ + ++ +++ H+
Sbjct: 404 LQDLMEGL-TAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRA 462
Query: 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIK 373
E +M L+ + K++ + + RR L+ K
Sbjct: 463 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK 496
>pdb|1RRJ|A Chain A, Structural Mechanisms Of Camptothecin Resistance By
Mutations In Human Topoisomerase I
Length = 565
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 226 DLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGN-- 283
+LD Q+ V++F + + + + V +V N+ L ++ K ++L LN + N
Sbjct: 317 ELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKH 376
Query: 284 LQTQVESLTTTNALMREDLSIA-EKNLRILIQENENLKNQLANSSQHTSNLSV---HEVG 339
LQ +E L T + SI ++ L+ L +EN+ ++ + ++ +++ H+
Sbjct: 377 LQDLMEGL-TAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRA 435
Query: 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIK 373
E +M L+ + K++ + + RR L+ K
Sbjct: 436 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK 469
>pdb|1RR8|C Chain C, Structural Mechanisms Of Camptothecin Resistance By
Mutations In Human Topoisomerase I
Length = 565
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 226 DLDCQQGVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGN-- 283
+LD Q+ V++F + + + + V +V N+ L ++ K ++L LN + N
Sbjct: 317 ELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKH 376
Query: 284 LQTQVESLTTTNALMREDLSIA-EKNLRILIQENENLKNQLANSSQHTSNLSV---HEVG 339
LQ +E L T + SI ++ L+ L +EN+ ++ + ++ +++ H+
Sbjct: 377 LQDLMEGL-TAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQQA 435
Query: 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIK 373
E +M L+ + K++ + + RR L+ K
Sbjct: 436 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK 469
>pdb|3VDI|A Chain A, Structure Of The Fmo Protein From Pelodictyon Phaeum
Length = 367
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 183 HRD-DILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDFSLYLR 241
H D +I++E + + A V + L L DCN+ ++ + LD Q+GV+ F+ +
Sbjct: 13 HSDYEIILEGGSSSWGQIKGRAKVNVPAALPLLPADCNIKIEAKPLDAQKGVVRFTSQIE 72
Query: 242 S 242
S
Sbjct: 73 S 73
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 229 CQQGVIDF--SLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQT 286
QG +DF SL LR + D PE++ SQV + + L+ + + EL L+A +
Sbjct: 144 AMQGELDFEQSLRLRVSKLKDAPEQILSQVRETLPLMPE----LPELVATLHAFGWKVAI 199
Query: 287 QVESLTTTNALMREDLSI 304
T + ++E LS+
Sbjct: 200 ASGGFTYFSDYLKEQLSL 217
>pdb|3EOJ|A Chain A, Fmo Protein From Prosthecochloris Aestuarii 2k At 1.3a
Resolution
Length = 366
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 183 HRD-DILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDFSLYLR 241
H D +I++E + + A V + + L DCN+ + + LD Q+GV+ F+ +
Sbjct: 12 HSDYEIILEGGSSSWGQVKGRAKVNVPAAIPLLPTDCNIRIDAKPLDAQKGVVRFTTKIE 71
Query: 242 S 242
S
Sbjct: 72 S 72
>pdb|4FNV|A Chain A, Crystal Structure Of Heparinase Iii
Length = 702
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 282 GN-LQTQVESLTTTNALMREDLSIAEKNLRILIQE-NENLKNQLANSSQHTSNLSVH-EV 338
GN L +Q +L T LM E AEK + Q +E ++NQ+ + H +S+H +
Sbjct: 259 GNILISQANALATAGTLMPE-FKNAEKWMNTGYQILSEEVQNQIMSDGWHKE-MSLHYHI 316
Query: 339 GLKAEMEVAMKLLERD 354
G+ A+ AMKL E +
Sbjct: 317 GIVADFYEAMKLAEAN 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,327,029
Number of Sequences: 62578
Number of extensions: 319285
Number of successful extensions: 1035
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 40
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)