Query psy1888
Match_columns 386
No_of_seqs 177 out of 336
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 18:48:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4381|consensus 100.0 1.8E-50 3.9E-55 402.8 12.0 297 51-376 10-311 (368)
2 PF02759 RUN: RUN domain; Int 99.9 6.9E-28 1.5E-32 206.3 8.0 123 100-223 1-132 (133)
3 KOG2080|consensus 99.8 2.8E-18 6.1E-23 182.8 11.4 157 55-224 756-967 (1295)
4 KOG1648|consensus 99.7 1.3E-18 2.8E-23 178.0 7.0 153 62-220 5-182 (813)
5 smart00593 RUN domain involved 99.7 4.5E-17 9.8E-22 125.8 5.4 63 160-223 1-64 (64)
6 KOG3759|consensus 97.3 0.00067 1.5E-08 70.5 7.9 68 155-223 545-612 (621)
7 PRK15422 septal ring assembly 94.5 0.22 4.8E-06 40.6 7.6 56 270-325 9-64 (79)
8 COG3074 Uncharacterized protei 94.5 0.25 5.5E-06 39.6 7.7 56 269-324 8-63 (79)
9 KOG2222|consensus 94.4 0.031 6.7E-07 59.0 3.2 121 99-223 628-786 (848)
10 PF00038 Filament: Intermediat 94.1 0.73 1.6E-05 45.2 11.9 67 260-326 13-80 (312)
11 PF06005 DUF904: Protein of un 93.0 0.67 1.5E-05 37.1 7.9 53 272-324 4-56 (72)
12 KOG0804|consensus 92.1 2.5 5.4E-05 44.7 12.7 112 261-372 328-447 (493)
13 KOG2080|consensus 91.9 0.32 6.9E-06 54.5 6.2 111 18-132 512-677 (1295)
14 PF04849 HAP1_N: HAP1 N-termin 91.9 2.8 6.1E-05 42.3 12.4 72 259-330 161-236 (306)
15 PF10212 TTKRSYEDQ: Predicted 91.6 2.4 5.1E-05 45.5 12.2 93 260-366 422-514 (518)
16 KOG0995|consensus 91.4 2 4.4E-05 46.4 11.4 99 269-374 218-322 (581)
17 PF08317 Spc7: Spc7 kinetochor 91.3 9.1 0.0002 38.5 15.6 65 261-325 131-195 (325)
18 PRK10884 SH3 domain-containing 91.2 1.1 2.5E-05 42.5 8.5 54 272-325 93-150 (206)
19 PRK11637 AmiB activator; Provi 90.9 8.5 0.00018 39.9 15.4 48 277-324 80-127 (428)
20 KOG0963|consensus 90.8 4.9 0.00011 43.9 13.7 115 259-373 183-344 (629)
21 PRK09039 hypothetical protein; 90.8 6.2 0.00013 40.2 13.9 33 342-374 154-186 (343)
22 PF00038 Filament: Intermediat 90.7 7.8 0.00017 38.0 14.2 57 269-325 185-241 (312)
23 COG2433 Uncharacterized conser 90.6 3.4 7.3E-05 45.2 12.2 90 279-377 422-512 (652)
24 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.3 7.2 0.00016 34.2 12.3 17 263-279 41-57 (132)
25 PF08172 CASP_C: CASP C termin 90.1 4.1 8.9E-05 39.9 11.5 38 347-384 94-131 (248)
26 PF05911 DUF869: Plant protein 89.9 5.1 0.00011 45.1 13.4 31 345-376 163-193 (769)
27 PF15397 DUF4618: Domain of un 89.8 5.3 0.00011 39.4 12.0 61 264-324 66-137 (258)
28 smart00787 Spc7 Spc7 kinetocho 89.7 15 0.00032 37.1 15.5 66 260-325 125-190 (312)
29 PF12718 Tropomyosin_1: Tropom 88.3 12 0.00025 33.6 12.2 30 344-373 113-142 (143)
30 PF12325 TMF_TATA_bd: TATA ele 88.3 14 0.0003 32.5 12.3 92 269-375 20-111 (120)
31 COG1579 Zn-ribbon protein, pos 88.3 6.7 0.00015 38.3 11.4 47 278-324 16-62 (239)
32 PF12718 Tropomyosin_1: Tropom 88.1 11 0.00023 33.8 11.9 42 343-384 77-118 (143)
33 PF09726 Macoilin: Transmembra 88.1 5.7 0.00012 44.3 12.1 92 284-375 543-658 (697)
34 COG3883 Uncharacterized protei 87.5 19 0.00041 35.8 14.1 112 259-370 39-207 (265)
35 TIGR03752 conj_TIGR03752 integ 87.3 3.1 6.7E-05 44.2 9.0 85 272-373 59-143 (472)
36 PF11559 ADIP: Afadin- and alp 86.9 14 0.00031 32.7 12.0 58 263-320 43-100 (151)
37 PF05667 DUF812: Protein of un 86.6 16 0.00035 40.0 14.4 33 348-380 396-428 (594)
38 PF04111 APG6: Autophagy prote 86.5 6.6 0.00014 39.6 10.6 22 356-377 116-137 (314)
39 PRK09039 hypothetical protein; 86.5 7.1 0.00015 39.7 11.0 10 226-235 12-21 (343)
40 PF09726 Macoilin: Transmembra 86.4 10 0.00023 42.3 13.0 92 284-375 472-581 (697)
41 KOG0971|consensus 86.3 11 0.00023 43.3 12.8 33 284-316 408-440 (1243)
42 PF05911 DUF869: Plant protein 86.3 8.3 0.00018 43.5 12.2 105 277-385 601-705 (769)
43 PF08317 Spc7: Spc7 kinetochor 86.0 24 0.00052 35.5 14.4 27 299-325 208-234 (325)
44 PRK10884 SH3 domain-containing 86.0 5.4 0.00012 38.0 9.2 48 274-321 120-167 (206)
45 PF10186 Atg14: UV radiation r 85.9 17 0.00037 34.9 12.9 38 283-320 67-104 (302)
46 PF07798 DUF1640: Protein of u 85.6 22 0.00048 32.6 12.9 105 264-377 43-155 (177)
47 PF04156 IncA: IncA protein; 85.2 15 0.00033 33.4 11.6 38 279-316 102-139 (191)
48 KOG0243|consensus 85.1 16 0.00034 42.5 13.7 44 339-385 514-557 (1041)
49 PF04859 DUF641: Plant protein 85.0 28 0.0006 31.1 13.6 113 271-383 11-131 (131)
50 KOG0982|consensus 84.5 15 0.00032 38.9 12.1 95 280-378 298-392 (502)
51 TIGR02449 conserved hypothetic 84.0 3.4 7.3E-05 32.7 5.7 52 276-334 4-55 (65)
52 PRK02224 chromosome segregatio 83.2 22 0.00049 39.9 14.0 12 13-25 5-16 (880)
53 TIGR01843 type_I_hlyD type I s 83.0 23 0.0005 35.6 12.8 39 279-317 137-175 (423)
54 PRK13169 DNA replication intia 82.6 3.5 7.7E-05 35.7 5.8 48 285-332 7-54 (110)
55 PF10186 Atg14: UV radiation r 82.5 47 0.001 31.8 15.4 45 284-328 61-105 (302)
56 PF06156 DUF972: Protein of un 82.5 3.6 7.8E-05 35.4 5.8 33 297-329 19-51 (107)
57 KOG1029|consensus 82.4 13 0.00028 42.0 11.2 116 260-375 418-578 (1118)
58 PF09755 DUF2046: Uncharacteri 82.1 20 0.00043 36.4 11.7 43 282-324 23-65 (310)
59 PF00170 bZIP_1: bZIP transcri 81.9 5.1 0.00011 30.6 6.0 38 279-316 26-63 (64)
60 PF14197 Cep57_CLD_2: Centroso 81.8 12 0.00025 29.8 8.0 23 302-324 42-64 (69)
61 KOG0996|consensus 81.8 22 0.00047 41.8 13.1 57 259-315 793-849 (1293)
62 PF14662 CCDC155: Coiled-coil 81.7 49 0.0011 31.5 14.3 52 263-314 6-57 (193)
63 PF10473 CENP-F_leu_zip: Leuci 81.7 40 0.00087 30.4 14.9 45 280-324 25-69 (140)
64 KOG0161|consensus 81.5 24 0.00052 43.8 14.0 57 264-320 1061-1117(1930)
65 TIGR02169 SMC_prok_A chromosom 81.3 33 0.00072 39.2 14.7 8 13-20 4-11 (1164)
66 PF11932 DUF3450: Protein of u 81.1 40 0.00087 32.4 13.2 92 277-382 54-153 (251)
67 PF15066 CAGE1: Cancer-associa 80.3 47 0.001 35.6 14.0 118 267-384 385-516 (527)
68 TIGR00606 rad50 rad50. This fa 80.2 28 0.00061 41.4 14.0 29 352-380 933-961 (1311)
69 PF05700 BCAS2: Breast carcino 80.0 54 0.0012 31.2 13.5 31 331-361 181-211 (221)
70 PF07888 CALCOCO1: Calcium bin 79.9 53 0.0012 35.8 14.7 22 269-290 154-175 (546)
71 PF09304 Cortex-I_coil: Cortex 78.2 44 0.00095 29.0 10.9 44 276-319 13-56 (107)
72 KOG0977|consensus 77.9 59 0.0013 35.5 14.3 43 344-386 167-209 (546)
73 KOG0976|consensus 77.3 28 0.00061 39.6 11.8 34 268-301 95-128 (1265)
74 PF13094 CENP-Q: CENP-Q, a CEN 77.2 54 0.0012 29.4 13.3 64 259-322 21-84 (160)
75 PRK01203 prefoldin subunit alp 77.0 41 0.00088 30.1 10.8 35 346-380 87-121 (130)
76 PF06785 UPF0242: Uncharacteri 76.7 24 0.00053 36.3 10.4 45 275-319 88-132 (401)
77 PF07926 TPR_MLP1_2: TPR/MLP1/ 76.0 26 0.00057 30.6 9.4 25 362-386 107-131 (132)
78 COG5185 HEC1 Protein involved 75.8 41 0.00088 36.2 12.0 105 271-382 256-372 (622)
79 TIGR01069 mutS2 MutS2 family p 75.6 42 0.0009 38.0 13.0 109 265-374 501-610 (771)
80 KOG0971|consensus 75.5 67 0.0015 37.2 14.2 31 260-290 412-442 (1243)
81 COG1579 Zn-ribbon protein, pos 75.4 78 0.0017 31.0 13.2 81 301-381 97-178 (239)
82 PF09730 BicD: Microtubule-ass 74.8 19 0.00041 40.5 9.9 25 284-308 67-91 (717)
83 PF06810 Phage_GP20: Phage min 74.6 11 0.00024 34.3 6.8 34 348-381 103-137 (155)
84 PRK10361 DNA recombination pro 74.5 1.1E+02 0.0023 33.0 15.0 119 266-384 54-189 (475)
85 KOG0977|consensus 74.2 6.2 0.00013 42.8 5.8 86 268-353 292-388 (546)
86 PF08826 DMPK_coil: DMPK coile 73.6 30 0.00064 27.0 8.0 40 284-323 16-55 (61)
87 KOG2991|consensus 73.4 43 0.00094 33.4 10.9 78 284-374 215-292 (330)
88 smart00787 Spc7 Spc7 kinetocho 72.6 1.1E+02 0.0025 30.9 14.1 34 152-194 74-107 (312)
89 PF15035 Rootletin: Ciliary ro 72.2 10 0.00022 35.5 6.1 53 278-330 66-118 (182)
90 PF13870 DUF4201: Domain of un 71.8 37 0.00081 30.9 9.7 47 281-327 79-125 (177)
91 COG1196 Smc Chromosome segrega 71.7 93 0.002 36.7 15.1 47 278-324 238-284 (1163)
92 KOG4196|consensus 71.6 24 0.00053 31.6 7.9 56 269-327 33-101 (135)
93 PF06156 DUF972: Protein of un 71.6 22 0.00048 30.6 7.6 53 261-313 4-56 (107)
94 PHA02562 46 endonuclease subun 71.6 66 0.0014 34.0 12.8 26 257-282 298-323 (562)
95 KOG0612|consensus 71.4 25 0.00054 41.5 10.0 22 349-370 789-810 (1317)
96 KOG1853|consensus 71.4 1E+02 0.0022 30.9 12.8 107 273-380 46-181 (333)
97 KOG0161|consensus 71.3 84 0.0018 39.3 14.8 65 260-324 910-981 (1930)
98 PF00261 Tropomyosin: Tropomyo 71.1 67 0.0015 30.8 11.7 45 340-384 72-116 (237)
99 PF04849 HAP1_N: HAP1 N-termin 69.7 15 0.00032 37.3 7.0 45 277-321 239-283 (306)
100 PF07407 Seadorna_VP6: Seadorn 69.4 7.7 0.00017 39.7 4.9 25 308-332 33-57 (420)
101 PF05483 SCP-1: Synaptonemal c 69.4 82 0.0018 35.4 12.9 58 267-324 589-653 (786)
102 PF01166 TSC22: TSC-22/dip/bun 69.2 2.5 5.3E-05 32.8 1.1 36 299-334 13-48 (59)
103 PF05701 WEMBL: Weak chloropla 69.2 1.3E+02 0.0028 32.4 14.5 34 340-374 230-263 (522)
104 PF05266 DUF724: Protein of un 69.0 36 0.00078 32.0 9.1 52 274-325 126-177 (190)
105 PRK06569 F0F1 ATP synthase sub 68.7 95 0.0021 28.5 11.4 55 269-323 38-93 (155)
106 PRK04863 mukB cell division pr 68.6 69 0.0015 39.0 13.3 23 64-86 782-804 (1486)
107 TIGR02894 DNA_bind_RsfA transc 68.4 32 0.00069 31.8 8.3 35 289-323 100-134 (161)
108 PRK04778 septation ring format 68.2 94 0.002 33.7 13.2 26 348-373 406-431 (569)
109 KOG1029|consensus 68.2 33 0.00072 39.0 9.7 38 284-321 414-451 (1118)
110 KOG0946|consensus 68.1 94 0.002 35.6 13.2 58 270-327 662-719 (970)
111 PF06632 XRCC4: DNA double-str 67.9 1.2E+02 0.0025 31.3 13.1 80 272-377 130-211 (342)
112 KOG3647|consensus 67.9 63 0.0014 32.5 10.7 93 270-376 103-205 (338)
113 PRK03918 chromosome segregatio 67.8 1.5E+02 0.0032 33.3 15.2 8 13-20 5-12 (880)
114 PF11932 DUF3450: Protein of u 67.8 93 0.002 29.9 11.9 39 282-320 38-76 (251)
115 KOG0239|consensus 67.7 67 0.0015 35.9 12.2 21 306-326 240-260 (670)
116 KOG0250|consensus 67.4 96 0.0021 36.4 13.4 98 276-373 313-428 (1074)
117 PRK00409 recombination and DNA 67.1 87 0.0019 35.5 13.1 35 340-374 582-621 (782)
118 KOG0963|consensus 67.0 82 0.0018 34.9 12.3 12 343-354 236-247 (629)
119 PF10481 CENP-F_N: Cenp-F N-te 66.8 1E+02 0.0022 31.1 11.9 57 276-332 29-88 (307)
120 KOG0250|consensus 66.8 1E+02 0.0022 36.2 13.5 61 269-329 285-345 (1074)
121 PF08614 ATG16: Autophagy prot 66.7 15 0.00032 34.2 6.0 37 285-321 94-130 (194)
122 PF06005 DUF904: Protein of un 66.6 66 0.0014 25.8 8.9 43 281-323 6-48 (72)
123 KOG4674|consensus 66.4 1.1E+02 0.0023 38.1 14.1 119 257-375 383-504 (1822)
124 PRK02224 chromosome segregatio 66.2 1.3E+02 0.0027 34.0 14.3 11 65-75 35-45 (880)
125 PF15070 GOLGA2L5: Putative go 65.8 69 0.0015 35.5 11.7 29 347-375 280-308 (617)
126 PF13815 Dzip-like_N: Iguana/D 65.7 27 0.00058 30.1 7.0 35 269-303 70-104 (118)
127 PF10392 COG5: Golgi transport 65.6 93 0.002 27.2 12.3 83 256-374 27-114 (132)
128 PRK09343 prefoldin subunit bet 65.5 92 0.002 27.0 10.4 29 344-372 83-111 (121)
129 KOG0804|consensus 65.3 72 0.0016 34.1 11.1 29 347-375 429-457 (493)
130 PF14662 CCDC155: Coiled-coil 65.3 1.3E+02 0.0028 28.7 13.4 29 352-380 150-178 (193)
131 COG1196 Smc Chromosome segrega 65.2 1.3E+02 0.0027 35.7 14.4 26 347-372 461-486 (1163)
132 KOG4674|consensus 65.2 75 0.0016 39.3 12.6 101 279-379 224-324 (1822)
133 PF15294 Leu_zip: Leucine zipp 65.0 72 0.0016 32.0 10.6 36 334-369 195-231 (278)
134 PF15290 Syntaphilin: Golgi-lo 64.5 72 0.0016 32.2 10.4 43 256-301 55-104 (305)
135 TIGR01843 type_I_hlyD type I s 64.3 1.6E+02 0.0035 29.5 14.5 46 274-319 139-184 (423)
136 PF05483 SCP-1: Synaptonemal c 63.7 1.2E+02 0.0026 34.2 12.7 117 261-378 530-686 (786)
137 KOG4360|consensus 63.6 55 0.0012 35.5 10.0 64 261-324 222-285 (596)
138 KOG1003|consensus 63.5 66 0.0014 30.8 9.6 72 288-377 6-77 (205)
139 PHA02562 46 endonuclease subun 63.1 1.7E+02 0.0037 30.9 13.9 13 277-289 311-323 (562)
140 PF05701 WEMBL: Weak chloropla 63.1 1.5E+02 0.0032 32.0 13.5 47 279-325 309-355 (522)
141 PF06785 UPF0242: Uncharacteri 62.4 1.5E+02 0.0032 30.8 12.3 37 284-324 73-109 (401)
142 PRK10361 DNA recombination pro 62.4 2.3E+02 0.005 30.6 15.8 58 297-354 64-126 (475)
143 PRK04778 septation ring format 61.9 1.8E+02 0.004 31.5 14.0 24 356-380 451-474 (569)
144 PF08614 ATG16: Autophagy prot 61.8 48 0.001 30.8 8.4 47 277-323 114-160 (194)
145 PRK03918 chromosome segregatio 60.6 2.4E+02 0.0052 31.7 15.1 8 66-73 36-43 (880)
146 PF10473 CENP-F_leu_zip: Leuci 60.6 1.3E+02 0.0028 27.2 14.5 68 260-327 12-79 (140)
147 TIGR03689 pup_AAA proteasome A 60.2 16 0.00034 39.4 5.5 41 281-321 3-43 (512)
148 PF12128 DUF3584: Protein of u 59.7 2.2E+02 0.0048 33.8 15.1 59 266-324 615-673 (1201)
149 PF06637 PV-1: PV-1 protein (P 59.3 1.1E+02 0.0024 32.2 11.0 22 349-370 359-380 (442)
150 PF14915 CCDC144C: CCDC144C pr 58.7 79 0.0017 32.1 9.6 85 288-372 139-240 (305)
151 PF09304 Cortex-I_coil: Cortex 58.6 1.2E+02 0.0026 26.4 9.5 57 266-322 10-73 (107)
152 PF13851 GAS: Growth-arrest sp 58.5 1.7E+02 0.0036 27.7 15.5 15 261-275 9-23 (201)
153 PF10226 DUF2216: Uncharacteri 58.4 1.7E+02 0.0036 28.0 11.2 98 257-377 30-139 (195)
154 KOG0288|consensus 58.4 1.8E+02 0.0038 31.0 12.4 56 270-325 15-73 (459)
155 KOG4673|consensus 58.2 75 0.0016 35.8 10.1 90 270-374 857-946 (961)
156 KOG3650|consensus 58.1 26 0.00056 30.1 5.3 36 277-312 68-103 (120)
157 KOG0288|consensus 57.8 80 0.0017 33.5 9.8 38 264-301 33-70 (459)
158 COG3524 KpsE Capsule polysacch 57.7 40 0.00087 34.5 7.4 29 168-197 80-108 (372)
159 cd00890 Prefoldin Prefoldin is 57.6 76 0.0016 26.7 8.3 32 281-312 8-42 (129)
160 PRK04863 mukB cell division pr 57.6 2.1E+02 0.0046 35.1 14.6 27 171-202 253-279 (1486)
161 TIGR03185 DNA_S_dndD DNA sulfu 57.2 1.1E+02 0.0025 33.5 11.6 13 13-26 5-17 (650)
162 COG1322 Predicted nuclease of 57.1 2E+02 0.0043 30.8 12.9 50 336-385 132-182 (448)
163 TIGR03185 DNA_S_dndD DNA sulfu 56.9 1.8E+02 0.0038 32.0 13.0 11 361-371 491-501 (650)
164 KOG1962|consensus 56.6 39 0.00085 32.7 6.9 13 291-303 132-144 (216)
165 KOG4403|consensus 56.4 88 0.0019 33.5 9.9 23 263-285 233-255 (575)
166 KOG1937|consensus 56.3 1.1E+02 0.0024 32.8 10.6 38 348-385 295-332 (521)
167 KOG0612|consensus 55.7 2.6E+02 0.0057 33.6 14.2 29 195-223 346-374 (1317)
168 PF15254 CCDC14: Coiled-coil d 55.4 1.5E+02 0.0033 33.8 12.0 100 270-376 432-542 (861)
169 PRK08475 F0F1 ATP synthase sub 55.1 1.7E+02 0.0036 26.7 11.4 38 268-305 49-86 (167)
170 PF04102 SlyX: SlyX; InterPro 55.0 65 0.0014 25.3 6.9 36 268-303 14-49 (69)
171 KOG0995|consensus 54.9 3.2E+02 0.0068 30.2 14.0 41 284-324 285-325 (581)
172 PF15619 Lebercilin: Ciliary p 54.9 1.9E+02 0.0041 27.3 11.2 26 276-301 16-41 (194)
173 PF05667 DUF812: Protein of un 54.8 1.6E+02 0.0035 32.5 12.1 24 347-370 455-478 (594)
174 KOG4643|consensus 54.8 2.2E+02 0.0049 33.5 13.3 22 359-380 584-607 (1195)
175 PF13851 GAS: Growth-arrest sp 54.6 1.9E+02 0.0042 27.3 13.4 74 299-374 85-171 (201)
176 smart00338 BRLZ basic region l 54.4 39 0.00084 25.8 5.4 37 279-322 26-62 (65)
177 PF05983 Med7: MED7 protein; 54.3 1.8E+02 0.0038 26.7 11.6 98 259-375 56-160 (162)
178 KOG3809|consensus 54.2 77 0.0017 33.9 9.1 98 279-376 479-577 (583)
179 cd00584 Prefoldin_alpha Prefol 54.1 1.4E+02 0.003 25.5 10.5 42 269-314 3-44 (129)
180 PRK13169 DNA replication intia 53.5 69 0.0015 27.8 7.3 43 261-303 4-46 (110)
181 TIGR00219 mreC rod shape-deter 53.3 25 0.00053 34.9 5.2 37 289-325 69-109 (283)
182 PF07889 DUF1664: Protein of u 53.1 1.4E+02 0.003 26.6 9.3 52 269-320 58-109 (126)
183 PF04728 LPP: Lipoprotein leuc 53.1 61 0.0013 25.0 6.1 28 276-303 7-34 (56)
184 PF04977 DivIC: Septum formati 53.1 55 0.0012 25.2 6.2 31 275-305 20-50 (80)
185 PF12128 DUF3584: Protein of u 52.8 2.1E+02 0.0045 34.1 13.5 16 279-294 614-629 (1201)
186 COG3883 Uncharacterized protei 52.8 84 0.0018 31.3 8.7 18 277-294 43-60 (265)
187 PF07200 Mod_r: Modifier of ru 52.5 1.1E+02 0.0023 27.0 8.7 67 259-325 8-80 (150)
188 cd00890 Prefoldin Prefoldin is 52.4 1.4E+02 0.0031 25.1 10.3 28 265-292 6-33 (129)
189 PF03148 Tektin: Tektin family 52.4 2.6E+02 0.0057 28.9 12.7 84 155-242 119-205 (384)
190 TIGR03007 pepcterm_ChnLen poly 51.9 2.2E+02 0.0048 29.8 12.4 28 268-295 164-191 (498)
191 KOG4005|consensus 51.8 1.1E+02 0.0024 30.3 9.1 47 299-345 89-135 (292)
192 TIGR01069 mutS2 MutS2 family p 51.7 1.6E+02 0.0035 33.4 11.9 9 193-201 402-410 (771)
193 KOG2264|consensus 51.7 47 0.001 36.7 7.2 65 260-324 78-152 (907)
194 TIGR03007 pepcterm_ChnLen poly 51.1 2.3E+02 0.005 29.7 12.3 11 14-24 38-48 (498)
195 cd00632 Prefoldin_beta Prefold 50.7 1.5E+02 0.0032 24.8 9.8 33 340-372 71-103 (105)
196 PRK02119 hypothetical protein; 50.3 99 0.0022 24.7 7.3 16 279-294 9-24 (73)
197 PRK13922 rod shape-determining 50.3 1.2E+02 0.0025 29.5 9.3 35 290-324 73-110 (276)
198 TIGR03545 conserved hypothetic 50.3 1.4E+02 0.0031 32.6 10.8 25 360-384 244-268 (555)
199 PF11559 ADIP: Afadin- and alp 50.1 1.8E+02 0.0039 25.6 14.8 53 269-321 56-108 (151)
200 KOG0980|consensus 49.6 4.9E+02 0.011 30.4 22.7 46 90-135 51-111 (980)
201 PF05377 FlaC_arch: Flagella a 49.3 52 0.0011 25.3 5.2 36 277-312 5-40 (55)
202 PF07106 TBPIP: Tat binding pr 49.2 42 0.00091 30.3 5.7 18 275-292 89-106 (169)
203 COG3074 Uncharacterized protei 49.2 65 0.0014 26.1 5.9 43 270-312 30-72 (79)
204 PRK02793 phi X174 lysis protei 49.0 96 0.0021 24.7 7.0 42 279-320 8-49 (72)
205 PF04728 LPP: Lipoprotein leuc 48.7 86 0.0019 24.2 6.3 39 274-312 12-50 (56)
206 PRK13729 conjugal transfer pil 48.6 51 0.0011 35.4 6.9 18 352-369 103-120 (475)
207 TIGR02338 gimC_beta prefoldin, 48.5 1.7E+02 0.0036 24.7 11.0 33 340-372 75-107 (110)
208 PRK13729 conjugal transfer pil 48.4 43 0.00093 35.9 6.3 44 280-323 77-120 (475)
209 PF04859 DUF641: Plant protein 48.3 48 0.001 29.6 5.7 47 277-323 78-124 (131)
210 smart00338 BRLZ basic region l 48.3 54 0.0012 25.0 5.4 33 270-302 31-63 (65)
211 PF04156 IncA: IncA protein; 47.6 2.2E+02 0.0047 25.8 14.0 48 272-319 102-149 (191)
212 PF05529 Bap31: B-cell recepto 47.3 1.1E+02 0.0024 28.2 8.2 6 126-131 4-9 (192)
213 PF04102 SlyX: SlyX; InterPro 47.1 39 0.00084 26.5 4.5 48 277-324 2-49 (69)
214 KOG0243|consensus 46.9 4.1E+02 0.0088 31.5 14.0 24 161-184 312-337 (1041)
215 PF15070 GOLGA2L5: Putative go 46.7 3.5E+02 0.0076 30.1 13.2 49 276-324 19-67 (617)
216 PF10174 Cast: RIM-binding pro 46.3 2.6E+02 0.0057 32.0 12.4 32 279-310 392-423 (775)
217 KOG0996|consensus 46.3 3.7E+02 0.0079 32.3 13.5 55 270-324 396-457 (1293)
218 TIGR01005 eps_transp_fam exopo 46.3 3.1E+02 0.0066 30.6 12.9 20 355-374 311-330 (754)
219 PF14197 Cep57_CLD_2: Centroso 46.1 96 0.0021 24.6 6.5 48 277-324 3-57 (69)
220 PF09755 DUF2046: Uncharacteri 45.9 3.5E+02 0.0075 27.7 12.3 21 347-367 143-163 (310)
221 KOG2685|consensus 45.6 4E+02 0.0087 28.3 14.5 30 345-374 343-372 (421)
222 COG4913 Uncharacterized protei 45.6 2E+02 0.0044 33.0 10.9 15 355-371 769-783 (1104)
223 PRK00295 hypothetical protein; 45.5 1.2E+02 0.0026 23.9 7.0 33 268-300 15-47 (68)
224 PRK04325 hypothetical protein; 45.5 1.2E+02 0.0025 24.3 7.0 40 280-319 10-49 (74)
225 PF10191 COG7: Golgi complex c 45.3 1.8E+02 0.0039 32.9 11.0 51 268-318 45-95 (766)
226 PRK00736 hypothetical protein; 45.3 1.2E+02 0.0026 23.9 7.0 34 268-301 15-48 (68)
227 PF06428 Sec2p: GDP/GTP exchan 45.3 36 0.00078 29.0 4.3 29 347-375 52-80 (100)
228 PF13815 Dzip-like_N: Iguana/D 45.1 95 0.0021 26.7 7.0 45 260-304 68-112 (118)
229 PF02996 Prefoldin: Prefoldin 44.9 63 0.0014 27.0 5.8 88 277-372 1-117 (120)
230 PRK14160 heat shock protein Gr 44.7 2.6E+02 0.0056 26.9 10.4 52 270-321 45-96 (211)
231 COG4026 Uncharacterized protei 44.6 71 0.0015 31.4 6.6 43 283-325 139-181 (290)
232 TIGR02680 conserved hypothetic 44.5 3.5E+02 0.0076 32.8 13.7 24 351-374 352-375 (1353)
233 PRK03947 prefoldin subunit alp 44.3 2.1E+02 0.0047 24.8 12.4 30 343-372 105-134 (140)
234 COG2433 Uncharacterized conser 44.1 2.7E+02 0.0058 31.1 11.5 75 305-383 427-504 (652)
235 PF10146 zf-C4H2: Zinc finger- 44.1 3.1E+02 0.0068 26.6 11.1 81 281-365 3-86 (230)
236 PF10498 IFT57: Intra-flagella 44.1 2.5E+02 0.0054 29.1 11.0 43 277-319 264-306 (359)
237 PF15397 DUF4618: Domain of un 43.2 3.5E+02 0.0076 26.9 11.5 25 354-378 114-138 (258)
238 PF10267 Tmemb_cc2: Predicted 43.1 1.5E+02 0.0032 31.2 9.2 13 281-293 228-240 (395)
239 PF15294 Leu_zip: Leucine zipp 42.9 1.2E+02 0.0026 30.4 8.1 71 285-370 207-277 (278)
240 PF10168 Nup88: Nuclear pore c 42.9 4E+02 0.0086 30.2 13.1 38 284-321 584-621 (717)
241 PF12808 Mto2_bdg: Micro-tubul 42.8 77 0.0017 24.0 5.2 34 270-303 6-46 (52)
242 PRK04406 hypothetical protein; 42.5 1.4E+02 0.003 24.1 7.0 21 278-298 10-30 (75)
243 KOG3156|consensus 42.4 2.7E+02 0.0059 27.0 10.1 24 354-377 174-198 (220)
244 PF00769 ERM: Ezrin/radixin/mo 42.0 3.3E+02 0.0071 26.5 11.0 31 347-377 90-120 (246)
245 PTZ00464 SNF-7-like protein; P 42.0 3.2E+02 0.007 26.2 10.8 24 275-298 21-44 (211)
246 PF14916 CCDC92: Coiled-coil d 41.9 57 0.0012 25.5 4.5 38 285-325 2-39 (60)
247 cd00632 Prefoldin_beta Prefold 41.8 1E+02 0.0022 25.7 6.5 41 272-312 63-103 (105)
248 PF05529 Bap31: B-cell recepto 41.7 1.6E+02 0.0035 27.0 8.5 9 260-268 95-103 (192)
249 PF09766 FimP: Fms-interacting 41.6 2.8E+02 0.0061 28.4 10.9 36 342-377 111-146 (355)
250 PF07106 TBPIP: Tat binding pr 41.3 2.1E+02 0.0046 25.7 9.0 27 277-303 77-103 (169)
251 PF10777 YlaC: Inner membrane 41.3 8 0.00017 35.3 -0.3 22 17-38 94-115 (155)
252 KOG0240|consensus 41.2 3.6E+02 0.0079 29.9 11.9 58 267-324 416-480 (607)
253 PRK00295 hypothetical protein; 41.2 84 0.0018 24.8 5.5 44 278-321 4-47 (68)
254 PF07989 Microtub_assoc: Micro 41.0 1.8E+02 0.0038 23.5 7.4 72 280-368 1-72 (75)
255 PF12325 TMF_TATA_bd: TATA ele 41.0 2.5E+02 0.0054 24.6 12.0 55 269-323 27-84 (120)
256 TIGR02894 DNA_bind_RsfA transc 40.8 1.2E+02 0.0026 28.1 7.2 31 273-303 105-135 (161)
257 PRK00846 hypothetical protein; 40.7 1.5E+02 0.0033 24.2 7.0 44 277-320 11-54 (77)
258 KOG4196|consensus 40.7 79 0.0017 28.4 5.8 37 277-313 79-115 (135)
259 KOG3501|consensus 40.7 1.8E+02 0.0038 25.4 7.7 55 260-314 43-109 (114)
260 PF05557 MAD: Mitotic checkpoi 40.4 3.3E+02 0.0071 30.4 12.0 19 305-323 564-582 (722)
261 COG4467 Regulator of replicati 40.4 83 0.0018 27.4 5.7 21 308-328 30-50 (114)
262 COG1730 GIM5 Predicted prefold 40.1 98 0.0021 28.1 6.5 45 277-321 92-136 (145)
263 KOG2129|consensus 40.0 1.1E+02 0.0025 32.5 7.7 21 348-368 167-187 (552)
264 TIGR01005 eps_transp_fam exopo 39.8 3E+02 0.0066 30.6 11.6 60 299-373 344-403 (754)
265 PF10883 DUF2681: Protein of u 39.7 99 0.0021 25.8 5.9 45 275-324 19-63 (87)
266 KOG4552|consensus 39.7 3.2E+02 0.007 26.7 10.1 34 341-375 69-103 (272)
267 PF09789 DUF2353: Uncharacteri 39.5 4.4E+02 0.0095 27.0 15.0 39 286-324 72-110 (319)
268 PF09728 Taxilin: Myosin-like 39.5 4.2E+02 0.009 26.8 14.3 96 259-354 143-259 (309)
269 TIGR00293 prefoldin, archaeal 39.4 2.4E+02 0.0052 24.0 10.1 26 344-369 98-123 (126)
270 PF03962 Mnd1: Mnd1 family; I 39.2 2.8E+02 0.006 25.9 9.6 22 349-370 145-166 (188)
271 PF09728 Taxilin: Myosin-like 39.1 4.2E+02 0.0091 26.7 11.6 18 354-371 203-220 (309)
272 TIGR03319 YmdA_YtgF conserved 38.8 5.2E+02 0.011 28.0 12.8 71 301-373 105-177 (514)
273 PF08647 BRE1: BRE1 E3 ubiquit 38.6 2.3E+02 0.005 23.5 9.2 54 274-327 19-72 (96)
274 PRK00888 ftsB cell division pr 38.3 58 0.0013 27.7 4.5 33 275-307 30-62 (105)
275 PRK00736 hypothetical protein; 38.3 94 0.002 24.5 5.4 46 278-323 4-49 (68)
276 KOG0979|consensus 38.0 6.4E+02 0.014 29.9 13.7 63 262-324 626-688 (1072)
277 PF08826 DMPK_coil: DMPK coile 37.7 2E+02 0.0043 22.5 7.9 49 264-320 11-59 (61)
278 PF04871 Uso1_p115_C: Uso1 / p 37.4 3E+02 0.0065 24.5 9.1 19 302-320 57-75 (136)
279 PF10211 Ax_dynein_light: Axon 37.3 2.7E+02 0.0059 26.0 9.2 6 364-369 181-186 (189)
280 PRK11519 tyrosine kinase; Prov 37.2 5.2E+02 0.011 28.9 12.9 53 268-320 270-324 (719)
281 PF15233 SYCE1: Synaptonemal c 37.1 3.1E+02 0.0068 24.7 10.1 44 280-323 7-50 (134)
282 KOG0978|consensus 36.8 4E+02 0.0087 30.2 11.7 62 263-324 515-576 (698)
283 KOG0249|consensus 36.6 2.8E+02 0.0062 31.6 10.4 35 340-374 221-258 (916)
284 KOG1962|consensus 36.4 1E+02 0.0022 29.9 6.3 9 269-277 119-127 (216)
285 PF10211 Ax_dynein_light: Axon 36.3 3.1E+02 0.0067 25.6 9.4 27 270-296 132-158 (189)
286 PF05622 HOOK: HOOK protein; 36.2 12 0.00026 41.6 0.0 39 284-322 486-524 (713)
287 PF06160 EzrA: Septation ring 36.1 6E+02 0.013 27.6 14.3 22 347-368 387-408 (560)
288 TIGR02209 ftsL_broad cell divi 36.1 92 0.002 24.6 5.2 30 274-303 26-55 (85)
289 PRK02119 hypothetical protein; 36.0 1E+02 0.0022 24.6 5.3 35 268-302 19-53 (73)
290 PRK14473 F0F1 ATP synthase sub 35.9 3.2E+02 0.0069 24.4 11.8 15 269-283 36-50 (164)
291 KOG0577|consensus 35.9 5.7E+02 0.012 29.1 12.4 35 348-384 718-752 (948)
292 PF10828 DUF2570: Protein of u 35.4 1.5E+02 0.0033 25.2 6.6 39 284-322 37-75 (110)
293 PF08581 Tup_N: Tup N-terminal 35.2 1.6E+02 0.0035 24.0 6.4 42 272-316 29-73 (79)
294 PF09730 BicD: Microtubule-ass 35.1 4.4E+02 0.0094 30.0 11.8 73 302-374 361-433 (717)
295 PRK00106 hypothetical protein; 34.5 5.5E+02 0.012 28.1 12.2 72 301-374 126-199 (535)
296 PF13166 AAA_13: AAA domain 34.3 6.3E+02 0.014 27.7 12.9 25 348-372 433-457 (712)
297 KOG0946|consensus 34.2 3.6E+02 0.0077 31.3 10.8 21 177-198 505-526 (970)
298 KOG2077|consensus 34.1 2.1E+02 0.0046 31.8 8.8 45 281-325 324-368 (832)
299 PF04111 APG6: Autophagy prote 33.8 3.2E+02 0.007 27.5 9.7 11 284-294 62-72 (314)
300 PF13118 DUF3972: Protein of u 33.7 1.5E+02 0.0033 26.4 6.5 41 306-371 84-124 (126)
301 PF09738 DUF2051: Double stran 33.6 5.2E+02 0.011 26.2 11.7 66 259-324 78-164 (302)
302 PF14915 CCDC144C: CCDC144C pr 33.5 5E+02 0.011 26.5 10.8 45 280-324 57-101 (305)
303 PF14282 FlxA: FlxA-like prote 33.5 2.4E+02 0.0052 23.9 7.6 52 271-322 18-73 (106)
304 PF07851 TMPIT: TMPIT-like pro 33.4 5.5E+02 0.012 26.4 11.6 26 340-365 62-87 (330)
305 PF10224 DUF2205: Predicted co 33.4 2.3E+02 0.0049 23.3 7.0 48 267-314 18-65 (80)
306 cd07627 BAR_Vps5p The Bin/Amph 33.4 4.1E+02 0.009 24.9 11.6 76 260-335 103-178 (216)
307 PRK15178 Vi polysaccharide exp 33.1 6.1E+02 0.013 27.1 11.9 26 299-324 248-273 (434)
308 TIGR02977 phageshock_pspA phag 33.0 3.5E+02 0.0076 25.6 9.4 60 260-319 87-146 (219)
309 KOG4438|consensus 32.9 4.1E+02 0.0089 28.4 10.4 113 260-372 133-267 (446)
310 TIGR02449 conserved hypothetic 32.8 2.5E+02 0.0054 22.2 8.2 48 272-319 14-61 (65)
311 PRK15396 murein lipoprotein; P 32.8 1E+02 0.0023 25.2 4.9 25 276-300 29-53 (78)
312 PRK06231 F0F1 ATP synthase sub 32.5 4.3E+02 0.0094 24.9 12.3 15 269-283 76-90 (205)
313 PF06818 Fez1: Fez1; InterPro 32.4 2.5E+02 0.0055 26.9 8.2 9 378-386 188-196 (202)
314 TIGR02680 conserved hypothetic 32.4 1E+03 0.022 29.1 16.5 26 348-373 342-367 (1353)
315 PRK02793 phi X174 lysis protei 32.3 1.3E+02 0.0029 23.8 5.5 43 261-303 11-53 (72)
316 PF07334 IFP_35_N: Interferon- 32.2 75 0.0016 26.0 4.0 30 288-324 2-31 (76)
317 PF04880 NUDE_C: NUDE protein, 32.2 64 0.0014 29.9 4.1 39 281-323 2-40 (166)
318 PRK09841 cryptic autophosphory 32.1 6.4E+02 0.014 28.2 12.6 52 269-320 271-324 (726)
319 KOG2391|consensus 32.0 2E+02 0.0044 29.8 7.8 54 268-321 214-267 (365)
320 PRK00409 recombination and DNA 32.0 5.7E+02 0.012 29.2 12.3 10 231-240 460-469 (782)
321 PRK06231 F0F1 ATP synthase sub 31.9 4.4E+02 0.0096 24.8 10.9 26 269-294 90-115 (205)
322 PRK11091 aerobic respiration c 31.8 5.4E+02 0.012 28.3 12.0 35 341-375 126-160 (779)
323 PRK04406 hypothetical protein; 31.8 1.3E+02 0.0028 24.2 5.3 35 268-302 21-55 (75)
324 PRK01156 chromosome segregatio 31.8 8.1E+02 0.018 27.8 14.1 44 277-320 195-238 (895)
325 PTZ00454 26S protease regulato 31.4 1.5E+02 0.0032 30.9 7.1 36 285-320 28-63 (398)
326 KOG4466|consensus 30.4 5.9E+02 0.013 25.8 11.3 27 267-293 30-56 (291)
327 PF03962 Mnd1: Mnd1 family; I 30.3 4.6E+02 0.0099 24.5 10.7 17 308-324 111-127 (188)
328 TIGR03752 conj_TIGR03752 integ 30.2 2.1E+02 0.0046 30.8 8.0 38 257-301 58-95 (472)
329 PF14988 DUF4515: Domain of un 30.1 3.3E+02 0.0072 25.9 8.7 15 340-354 79-93 (206)
330 cd07595 BAR_RhoGAP_Rich-like T 30.1 3.8E+02 0.0083 26.1 9.3 62 264-329 103-180 (244)
331 KOG0933|consensus 29.9 5.5E+02 0.012 30.5 11.5 16 95-110 485-500 (1174)
332 PF01166 TSC22: TSC-22/dip/bun 29.7 77 0.0017 24.7 3.5 21 278-298 20-40 (59)
333 PF00769 ERM: Ezrin/radixin/mo 29.3 5.4E+02 0.012 25.0 14.9 23 292-314 18-40 (246)
334 TIGR03017 EpsF chain length de 29.2 6.4E+02 0.014 25.8 12.5 26 269-294 175-200 (444)
335 PF07889 DUF1664: Protein of u 29.2 4.1E+02 0.0089 23.6 11.6 23 272-294 54-76 (126)
336 PF07111 HCR: Alpha helical co 29.1 6.7E+02 0.015 28.5 11.8 87 277-363 167-266 (739)
337 PF10205 KLRAQ: Predicted coil 29.1 3.1E+02 0.0067 23.6 7.4 33 278-317 39-71 (102)
338 PF01576 Myosin_tail_1: Myosin 28.9 19 0.0004 41.2 0.0 44 260-303 168-211 (859)
339 PF01920 Prefoldin_2: Prefoldi 28.9 3.1E+02 0.0067 22.1 9.6 34 341-374 64-97 (106)
340 PRK04325 hypothetical protein; 28.9 1.6E+02 0.0035 23.5 5.4 35 268-302 19-53 (74)
341 PF08311 Mad3_BUB1_I: Mad3/BUB 28.7 52 0.0011 28.6 2.8 60 143-202 52-112 (126)
342 KOG4074|consensus 28.6 3E+02 0.0065 28.3 8.3 54 272-325 162-216 (383)
343 TIGR03321 alt_F1F0_F0_B altern 28.2 5.4E+02 0.012 24.7 10.6 89 267-355 31-125 (246)
344 PF12808 Mto2_bdg: Micro-tubul 28.2 1.9E+02 0.004 22.0 5.2 22 304-325 26-47 (52)
345 PRK12704 phosphodiesterase; Pr 28.1 8E+02 0.017 26.6 14.5 71 301-373 111-183 (520)
346 KOG0018|consensus 27.9 6.5E+02 0.014 30.0 11.7 36 339-374 444-479 (1141)
347 KOG0240|consensus 27.9 2.5E+02 0.0054 31.0 8.1 7 17-23 7-13 (607)
348 PF05700 BCAS2: Breast carcino 27.9 4.8E+02 0.01 24.8 9.4 32 267-298 138-169 (221)
349 KOG0972|consensus 27.9 2.9E+02 0.0064 28.3 8.1 7 340-346 320-326 (384)
350 PF07111 HCR: Alpha helical co 27.8 7.9E+02 0.017 28.0 12.0 50 283-332 525-574 (739)
351 PF09325 Vps5: Vps5 C terminal 27.7 4.9E+02 0.011 24.0 11.6 49 278-326 141-189 (236)
352 PF14988 DUF4515: Domain of un 27.2 5.5E+02 0.012 24.4 13.2 30 275-304 43-72 (206)
353 COG4477 EzrA Negative regulato 27.1 3.6E+02 0.0078 29.7 9.1 80 284-374 352-431 (570)
354 PF15450 DUF4631: Domain of un 27.0 7E+02 0.015 27.4 11.2 88 279-377 337-436 (531)
355 PF10234 Cluap1: Clusterin-ass 27.0 6.5E+02 0.014 25.2 12.7 21 356-376 242-262 (267)
356 KOG0999|consensus 26.9 9.3E+02 0.02 27.0 12.5 34 344-377 112-145 (772)
357 PF10243 MIP-T3: Microtubule-b 26.7 21 0.00046 38.3 0.0 91 279-369 435-525 (539)
358 PF06637 PV-1: PV-1 protein (P 26.6 7.1E+02 0.015 26.4 10.7 27 268-294 281-307 (442)
359 PRK10803 tol-pal system protei 26.3 3.3E+02 0.0071 26.7 8.1 39 281-319 56-94 (263)
360 PRK11281 hypothetical protein; 26.0 8.8E+02 0.019 29.1 12.7 56 270-325 126-181 (1113)
361 PF03980 Nnf1: Nnf1 ; InterPr 26.0 1.3E+02 0.0029 25.1 4.7 32 273-304 74-105 (109)
362 COG4487 Uncharacterized protei 26.0 8.4E+02 0.018 26.2 12.3 89 267-373 41-142 (438)
363 PF12777 MT: Microtubule-bindi 25.9 6.4E+02 0.014 25.5 10.4 26 276-301 19-44 (344)
364 PF12240 Angiomotin_C: Angiomo 25.9 6.1E+02 0.013 24.5 11.9 39 331-369 128-166 (205)
365 PF13864 Enkurin: Calmodulin-b 25.8 3.8E+02 0.0083 22.1 9.3 47 308-356 45-91 (98)
366 PF08537 NBP1: Fungal Nap bind 25.7 1.8E+02 0.0039 29.9 6.2 46 279-324 175-220 (323)
367 PF05266 DUF724: Protein of un 25.5 5.7E+02 0.012 24.0 11.5 61 294-372 125-185 (190)
368 TIGR00998 8a0101 efflux pump m 25.5 6.4E+02 0.014 24.6 12.5 39 278-316 86-124 (334)
369 PRK10807 paraquat-inducible pr 25.4 8E+02 0.017 26.8 11.6 15 208-222 377-391 (547)
370 COG1566 EmrA Multidrug resista 25.4 6.8E+02 0.015 25.9 10.5 29 345-373 175-203 (352)
371 COG5374 Uncharacterized conser 25.2 2.1E+02 0.0046 27.1 6.2 54 261-318 115-168 (192)
372 PRK10929 putative mechanosensi 25.0 1.3E+03 0.027 27.8 15.4 60 259-318 174-233 (1109)
373 PF12329 TMF_DNA_bd: TATA elem 24.9 2.5E+02 0.0053 22.4 5.8 16 279-294 12-27 (74)
374 KOG4360|consensus 24.5 9.8E+02 0.021 26.4 12.1 46 275-320 208-253 (596)
375 cd07623 BAR_SNX1_2 The Bin/Amp 24.4 6.1E+02 0.013 24.0 10.1 72 260-333 111-182 (224)
376 PLN03188 kinesin-12 family pro 24.4 3.5E+02 0.0076 32.7 9.0 55 268-322 1176-1233(1320)
377 PF10168 Nup88: Nuclear pore c 24.4 1.1E+03 0.023 26.8 12.7 37 284-320 563-599 (717)
378 PF10174 Cast: RIM-binding pro 24.3 1.1E+03 0.024 27.1 12.7 60 264-323 283-345 (775)
379 PF15619 Lebercilin: Ciliary p 24.2 6.1E+02 0.013 23.9 13.5 53 268-320 57-109 (194)
380 PF12761 End3: Actin cytoskele 24.0 4.7E+02 0.01 25.0 8.3 24 344-367 172-195 (195)
381 PF14645 Chibby: Chibby family 24.0 1E+02 0.0022 26.9 3.6 41 312-356 76-116 (116)
382 PF09744 Jnk-SapK_ap_N: JNK_SA 23.9 2.1E+02 0.0046 26.2 5.9 50 275-324 85-134 (158)
383 PRK00846 hypothetical protein; 23.9 2.1E+02 0.0047 23.3 5.3 39 266-304 21-59 (77)
384 KOG4445|consensus 23.9 1.1E+02 0.0024 31.3 4.4 33 272-304 144-176 (368)
385 PRK10698 phage shock protein P 23.8 6.5E+02 0.014 24.1 11.4 59 260-318 87-145 (222)
386 PHA03161 hypothetical protein; 23.7 4.4E+02 0.0094 24.3 7.7 54 264-317 53-106 (150)
387 PF08172 CASP_C: CASP C termin 23.5 2.2E+02 0.0048 27.9 6.3 41 259-299 80-127 (248)
388 PRK13428 F0F1 ATP synthase sub 23.4 9E+02 0.019 25.6 11.6 12 344-355 126-137 (445)
389 PF05010 TACC: Transforming ac 23.3 6.7E+02 0.014 24.1 13.6 112 259-371 70-200 (207)
390 KOG0982|consensus 23.3 4.4E+02 0.0096 28.3 8.7 50 270-319 309-358 (502)
391 PRK14145 heat shock protein Gr 23.2 4.8E+02 0.01 24.9 8.3 23 298-320 57-79 (196)
392 PRK00888 ftsB cell division pr 23.0 1.6E+02 0.0034 25.1 4.6 8 285-292 33-40 (105)
393 PF10498 IFT57: Intra-flagella 22.6 4.9E+02 0.011 26.9 8.9 22 152-173 93-114 (359)
394 TIGR02209 ftsL_broad cell divi 22.6 2.2E+02 0.0047 22.4 5.1 29 297-325 28-56 (85)
395 PF13118 DUF3972: Protein of u 22.6 2.6E+02 0.0056 25.0 5.9 8 261-268 77-84 (126)
396 PF15372 DUF4600: Domain of un 22.6 1.8E+02 0.004 26.0 5.0 25 271-295 14-38 (129)
397 PF05103 DivIVA: DivIVA protei 22.6 61 0.0013 27.5 2.0 10 364-373 111-120 (131)
398 PF06705 SF-assemblin: SF-asse 22.6 6.9E+02 0.015 23.9 12.9 26 349-374 164-189 (247)
399 PRK14472 F0F1 ATP synthase sub 22.5 5.8E+02 0.013 23.1 12.0 15 269-283 46-60 (175)
400 KOG0018|consensus 22.5 8.2E+02 0.018 29.3 11.2 36 348-383 312-347 (1141)
401 PF06705 SF-assemblin: SF-asse 22.5 6.9E+02 0.015 23.9 11.9 33 339-371 125-157 (247)
402 TIGR03495 phage_LysB phage lys 22.5 5.7E+02 0.012 23.0 8.2 37 280-316 20-56 (135)
403 PRK00106 hypothetical protein; 22.4 9.7E+02 0.021 26.3 11.4 21 340-360 182-202 (535)
404 KOG0810|consensus 22.4 8.2E+02 0.018 24.7 12.5 28 354-381 200-227 (297)
405 KOG4643|consensus 22.3 1.2E+03 0.026 27.9 12.4 39 260-298 273-320 (1195)
406 PRK13428 F0F1 ATP synthase sub 22.2 9.4E+02 0.02 25.4 12.3 14 357-370 109-122 (445)
407 TIGR02977 phageshock_pspA phag 22.2 6.7E+02 0.014 23.7 12.7 45 270-314 29-73 (219)
408 KOG1425|consensus 22.2 48 0.001 34.5 1.5 38 186-230 326-363 (430)
409 PF10224 DUF2205: Predicted co 22.1 2.3E+02 0.0049 23.3 5.1 28 299-326 29-56 (80)
410 COG4467 Regulator of replicati 22.1 4.1E+02 0.0088 23.3 6.8 51 261-325 4-54 (114)
411 COG4942 Membrane-bound metallo 21.9 6.5E+02 0.014 26.8 9.7 108 275-382 62-183 (420)
412 KOG2264|consensus 21.9 3.2E+02 0.007 30.5 7.6 29 270-298 81-112 (907)
413 PRK03992 proteasome-activating 21.9 2.6E+02 0.0056 28.7 6.8 44 277-320 6-49 (389)
414 PF10234 Cluap1: Clusterin-ass 21.6 8.2E+02 0.018 24.4 10.4 14 152-166 42-55 (267)
415 PF10241 KxDL: Uncharacterized 21.6 4.5E+02 0.0098 21.5 7.4 49 269-317 33-81 (88)
416 PF15290 Syntaphilin: Golgi-lo 21.5 7.5E+02 0.016 25.2 9.5 82 281-371 60-142 (305)
417 TIGR00634 recN DNA repair prot 21.4 3.6E+02 0.0077 29.2 8.0 39 256-294 299-337 (563)
418 COG5185 HEC1 Protein involved 21.2 1.1E+03 0.024 25.8 12.8 44 88-131 97-144 (622)
419 cd00780 NTF2 Nuclear transport 21.0 95 0.0021 26.0 2.9 42 172-214 9-56 (119)
420 KOG2911|consensus 20.9 2.9E+02 0.0063 29.5 6.9 72 274-372 235-309 (439)
421 PTZ00446 vacuolar sorting prot 20.8 7.3E+02 0.016 23.5 9.0 36 260-295 69-104 (191)
422 PF15605 Toxin_52: Putative to 20.7 1E+02 0.0022 26.6 2.9 46 124-170 43-89 (103)
423 KOG0964|consensus 20.7 7.8E+02 0.017 29.3 10.5 44 197-241 553-605 (1200)
424 PF02994 Transposase_22: L1 tr 20.6 1.9E+02 0.0041 29.9 5.5 12 270-281 49-60 (370)
425 PF12777 MT: Microtubule-bindi 20.6 4.2E+02 0.009 26.8 7.9 87 284-371 219-309 (344)
426 PRK09973 putative outer membra 20.4 2.7E+02 0.0059 23.2 5.3 22 277-298 29-50 (85)
427 TIGR00998 8a0101 efflux pump m 20.4 8E+02 0.017 23.9 10.5 46 276-321 91-136 (334)
428 TIGR00570 cdk7 CDK-activating 20.3 9.2E+02 0.02 24.6 10.1 40 259-298 88-132 (309)
429 PF07058 Myosin_HC-like: Myosi 20.2 4.9E+02 0.011 26.8 8.0 73 279-355 59-159 (351)
430 PF01486 K-box: K-box region; 20.2 4.9E+02 0.011 21.4 9.3 23 361-383 76-98 (100)
431 PRK15396 murein lipoprotein; P 20.0 3.6E+02 0.0079 22.0 5.9 34 277-310 37-70 (78)
No 1
>KOG4381|consensus
Probab=100.00 E-value=1.8e-50 Score=402.83 Aligned_cols=297 Identities=33% Similarity=0.484 Sum_probs=264.6
Q ss_pred CCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHHHhcCCC-CCC---CCCCCCCCc
Q psy1888 51 PEPPLFVARNPVIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLK-PKK---GLLGPKKEL 126 (386)
Q Consensus 51 ~~~~~~~~~~p~~ieR~NLl~~lK~sVK~LiE~~~~~~r~I~dd~~~L~~LC~~LE~iL~HGLK-~k~---~~~g~~~~f 126 (386)
+.+.+.....|++.+|+||+++++++||.+|+.+.+.+++++++++++++||+.||+||+|||| ..+ +..+++++|
T Consensus 10 ~~~~~~~~~~~~~~~R~~li~~~~~~vk~~i~~~~~~~e~~~~~~~~~q~lc~~lE~iL~hgLk~~~~~~~~~~~~~~~F 89 (368)
T KOG4381|consen 10 MASKKSASARPTAKERRNLINRALLSVKGLIESAHSGKETADDSSEPVQNFCNSLEAILSHGLKFAGKATKSSLGNQKTF 89 (368)
T ss_pred ccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcccCCcccCCccHHHHHHHHHHHHHHHhhhHHhhhccccccCCCccH
Confidence 3344455677799999999999999999999999998999999999999999999999999999 322 235578999
Q ss_pred hHHHHHHHhhCCcccchhhhhccCCCCCCccchhHHHHHHHHhhhhHHHHHHHHHhCchhHHHhcccccCccCCccHHHH
Q psy1888 127 WDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVI 206 (386)
Q Consensus 127 W~~l~~~~k~~P~~~d~i~~I~~L~~I~T~~GRgRAWIRlAL~eK~Ls~yL~~Ll~n~~~lL~~~Ye~~AlL~d~E~~vL 206 (386)
|+|++.+++++| ..+|.+|++|+|++||||||||+|||||.|++|+.+++.+. ..+++||++||+|.++++.+|
T Consensus 90 W~~v~~~~~~~p-----~~~~~dl~~I~t~vgkgRAwiR~aL~ek~l~~Y~~~~lad~-~~~~eFy~~~alm~~e~s~~L 163 (368)
T KOG4381|consen 90 WGFVRLVLHLVP-----RSSIEDLEQISTSVGKGRAWIRVALNEKRLSDYLSTLLADE-ELLSEFYEPWALMDEEESAIL 163 (368)
T ss_pred HHHHHHHhccCc-----hhhhhhhcccccccccchHHHHHHhhhhhHHHHHHHHHHhH-HHHHHHhcchHHHhHHHHHHH
Confidence 999999999987 57899999999999999999999999999999999999987 799999999999977778999
Q ss_pred HHhhccccceecccccCCCCCCCCC-ccccchhhhhccCCCCCCccccccccchhHHHHHhhhHHHHHHHHHHHhHHHHH
Q psy1888 207 LGKLLSLNVIDCNLCVKEEDLDCQQ-GVIDFSLYLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQ 285 (386)
Q Consensus 207 ~~lL~GLn~IdF~l~lk~~~LD~~~-~vId~s~yl~~~~~~~~~~~~~~~~~~~~~~~ldQK~ylEElnr~l~~~~~~l~ 285 (386)
.++|+||++|+|+||+++++||+++ +||||++|++....+ .+...+..+....++++++.+++++.++...++++
T Consensus 164 ~gLl~gLn~i~~~f~v~~~~Ld~q~~~v~~~s~~lk~~~~~----~~~~~~~~~~~ss~~~~~~~~~~~s~l~~~~~~~~ 239 (368)
T KOG4381|consen 164 PGLLVGLNAIDFSFCVDGEDLDGQAPAVPDFSCLLKPIQSN----DTPEEEVSQLLSSLDEKNRPEELVSPLEKDENSLY 239 (368)
T ss_pred HHhhcCHHHHHHHhhcchHhhcCCCCccceeeeeecccccc----CCccccccccccchhhhhhhhhhccccccchhccc
Confidence 9999999999999999999999995 999999999986322 11223444688889999999999999999999999
Q ss_pred HHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 286 TQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIEL 365 (386)
Q Consensus 286 ~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~l 365 (386)
.+....+..+.+..+|.+.|+..+.-+++++... -+.+.++.+|+.++++.++|+|.++.+
T Consensus 240 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~-------------------~~~q~~~~~~~~~~~~~~~~e~~~~~~ 300 (368)
T KOG4381|consen 240 PKCSVVEQKSLLLESEKEYAEELLRTNEGSFDDS-------------------ELLQTPEDDIKALVGEKEEKEDRSDEL 300 (368)
T ss_pred cccchhhhcchhHHHHHHhhhhhhhhhcCCCCch-------------------hhhcccCcchhhhhhhhhhcccccchh
Confidence 9999999999999999999998888887766543 266778899999999999999999999
Q ss_pred HHHHHHHhHhH
Q psy1888 366 RRQLEDIKMIN 376 (386)
Q Consensus 366 r~ql~~~k~in 376 (386)
.+|+.++...+
T Consensus 301 ~~~~~~~~~~~ 311 (368)
T KOG4381|consen 301 SQQVTSLSPSD 311 (368)
T ss_pred hhhhhhccCch
Confidence 99999998776
No 2
>PF02759 RUN: RUN domain; InterPro: IPR004012 This domain is present in several proteins that are linked to the functions of GTPases in the Rap and Rab families. They could therefore play important roles in multiple Ras-like GTPase signalling pathways.; PDB: 3CWZ_B 2CXF_A 2DWK_A 2DWG_A 2CXL_A.
Probab=99.95 E-value=6.9e-28 Score=206.34 Aligned_cols=123 Identities=34% Similarity=0.603 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcCCCC---CCCCCCCCCCchHHHHHHHhhCCcccchhhhhccCCCCCCc-----cchhHHHHHHHHhhh
Q psy1888 100 HFFIVLEHVLRHGLKP---KKGLLGPKKELWDILQLVEKLNPEASDITASVRDLPTVKTH-----MGRARAWLRLALMQK 171 (386)
Q Consensus 100 ~LC~~LE~iL~HGLK~---k~~~~g~~~~fW~~l~~~~k~~P~~~d~i~~I~~L~~I~T~-----~GRgRAWIRlAL~eK 171 (386)
+||.+||+||.||||. +...+.++++||++++.+.+..|....+++.|..+.+++|+ .||+|||||+|||++
T Consensus 1 ~Lc~~le~il~hGlk~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~gk~ra~Ir~aLn~~ 80 (133)
T PF02759_consen 1 SLCSALEAILSHGLKPSRSRARGFQRRSDYWDFIEKVEKLCPSARSLISAVQQISNIHTDIKLSSDGKFRAWIRLALNEK 80 (133)
T ss_dssp HHHHHHHHHHHTTB---SS---TT----TTHHHHHTHHHH-GGHHHHHHHHCT-TT--SH-----HHHHHHHHHHHHHCT
T ss_pred ChHHHHHHHHHcCCchhhHHHhhccCCCchHHHHHHHhccCcchHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHC
Confidence 5999999999999998 33345567899999999988888777888999999999888 999999999999999
Q ss_pred hHHHHHHHHHhCchhHHHhcccccCccCCccH-HHHHHhhccccceecccccC
Q psy1888 172 KLADYLQVLVDHRDDILVEYFETDALLMSDEA-IVILGKLLSLNVIDCNLCVK 223 (386)
Q Consensus 172 ~Ls~yL~~Ll~n~~~lL~~~Ye~~AlL~d~E~-~vL~~lL~GLn~IdF~l~lk 223 (386)
.|+.|++.+++++ +++++||+++|||++++. ..|+++|.||+.++|+|++|
T Consensus 81 ~L~~~l~~l~~~~-~~l~~~Y~~~A~l~~~~~~~~l~~~L~~L~~l~F~l~~~ 132 (133)
T PF02759_consen 81 CLSSWLQLLLSDP-KLLRKYYEPWAFLRDPELREQLLSLLSGLSALPFNLSLD 132 (133)
T ss_dssp -HHHHHHHHCTTH-HHHCCCB-TTSCTTSHHHHHHHHHHHGGGGCS-BESS--
T ss_pred hHHHHHHHHHhcc-hHHcCccCCcceeeCcchHHHHHHHHhhhCceeEEecCC
Confidence 9999999999998 799999999999999997 79999999999999999986
No 3
>KOG2080|consensus
Probab=99.75 E-value=2.8e-18 Score=182.77 Aligned_cols=157 Identities=31% Similarity=0.416 Sum_probs=124.2
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCccc--------------------CCChHHHHHHHHHHHHHhcCCC
Q psy1888 55 LFVARNPVIIERRNLVNISKLIVKELIETSQKHGRMLD--------------------SDHMPLQHFFIVLEHVLRHGLK 114 (386)
Q Consensus 55 ~~~~~~p~~ieR~NLl~~lK~sVK~LiE~~~~~~r~I~--------------------dd~~~L~~LC~~LE~iL~HGLK 114 (386)
..++-+|..+... ++++..+.++.-++++++- +++.-+...|..+|++|+|||.
T Consensus 756 ~~~~~Spsliaqa------tfVe~llK~i~~ktkrmllEkmg~eav~lg~~~~~i~~~eentlias~cdllekiwshglq 829 (1295)
T KOG2080|consen 756 QEEPWSPSLIAQA------TFVEELLKNIEKKTKRMLLEKMGTEAVRLGITHPSIARAEENTLIASGCDLLEKIWSHGLQ 829 (1295)
T ss_pred ccCCCCHHHHHHH------HHHHHHHHHHHhhhhcchhhhhcccchhcCCCCCcccchhhcchhHHHHHHHHHHHhcccc
Confidence 3445555544444 6676666666555555432 3455577899999999999999
Q ss_pred CCCCCCCCCCCchHHHHHHHhh------------------------------CCc----ccchhhhhccCCCCCCccchh
Q psy1888 115 PKKGLLGPKKELWDILQLVEKL------------------------------NPE----ASDITASVRDLPTVKTHMGRA 160 (386)
Q Consensus 115 ~k~~~~g~~~~fW~~l~~~~k~------------------------------~P~----~~d~i~~I~~L~~I~T~~GRg 160 (386)
.+.| ++..|..++.+... +|- +.| ++.|.+|..|+|++|++
T Consensus 830 ikqg----ksalW~hlq~y~~n~~~~~s~~~sp~~~rS~sR~r~~~~a~~~l~PLp~sl~~D-~knvl~m~eIKTdiGya 904 (1295)
T KOG2080|consen 830 IKQG----KSALWGHLQTYVSNLGGYASVEGSPRKMRSQSRTRSPDGARVVLSPLPTSLAYD-LKNVLRMTEIKTDIGYA 904 (1295)
T ss_pred cccC----cchhhHHHHHHHHhhcccccccCCCCccchhhcccCCCcceeecCCCcHHHHHH-HHHHHHHhhhhhhhhHH
Confidence 9887 78899999877641 110 112 37788899999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhCchhHHHhcccccCccCCccH-HHHHHhhccccceecccccCC
Q psy1888 161 RAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEA-IVILGKLLSLNVIDCNLCVKE 224 (386)
Q Consensus 161 RAWIRlAL~eK~Ls~yL~~Ll~n~~~lL~~~Ye~~AlL~d~E~-~vL~~lL~GLn~IdF~l~lk~ 224 (386)
|||+|+||..|.|+.++.+|++|. .++++.|+++||++++|. ++|+.++.+||+++| +|+.+
T Consensus 905 RA~VRLslEkKLL~rHl~~LLSd~-~llr~LYK~yAFl~~deEKEQFLyHlLslNavdy-~cFTN 967 (1295)
T KOG2080|consen 905 RAFVRLALERKLLHKHLGALLSNS-RVLRELYKPYAFVGSDEEKEQFLFHILSLNAAQF-RCFTN 967 (1295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhccchhccCchHHHHHHHHHHhcchhhe-eeecc
Confidence 999999999999999999999996 899999999999999985 999999999999999 55544
No 4
>KOG1648|consensus
Probab=99.75 E-value=1.3e-18 Score=177.98 Aligned_cols=153 Identities=24% Similarity=0.407 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHHHhcCCCCCC-CCCCCCCCchHHHHHHHhhCCcc
Q psy1888 62 VIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKK-GLLGPKKELWDILQLVEKLNPEA 140 (386)
Q Consensus 62 ~~ieR~NLl~~lK~sVK~LiE~~~~~~r~I~dd~~~L~~LC~~LE~iL~HGLK~k~-~~~g~~~~fW~~l~~~~k~~P~~ 140 (386)
....|+.||+-+|..||++|+++++ +++++++++++..||.++|+|+.||||++. |||...+. -..+..+.|.+|.+
T Consensus 5 e~~~re~LL~~vKkEvKqIMeEavt-rKfvhedSshiislC~AVeACilhgLRRRaagflrS~k~-aaLf~kvgKs~ppA 82 (813)
T KOG1648|consen 5 ETQHREVLLTKVKKEVKQIMEEAVT-RKFVHEDSSHIISLCIAVEACILHGLRRRAAGFLRSPKS-AALFQKVGKSNPPA 82 (813)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhcChhH-HHHHHHHhccCCcH
Confidence 4567899999999999999999997 789999999999999999999999999875 78876543 56677777777766
Q ss_pred cchhhhhccCCCC-----------------------CCccchhHHHHHHHHhhhhHHHHHHHHHhCchhHHHhcccccCc
Q psy1888 141 SDITASVRDLPTV-----------------------KTHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDAL 197 (386)
Q Consensus 141 ~d~i~~I~~L~~I-----------------------~T~~GRgRAWIRlAL~eK~Ls~yL~~Ll~n~~~lL~~~Ye~~Al 197 (386)
.++...++.+..+ -++++-...|||-||.+|.|+..++.+++|. ++||+..|+
T Consensus 83 ~~v~~kvqeleql~es~k~~~e~l~~~~~~~~k~palsp~alkhiWiRtAL~eKvLdkiv~ylien~----SkYYekeAL 158 (813)
T KOG1648|consen 83 QQVLDKVQELEQLRESRKPSQEALRRQGSASGKAPALSPQALKHIWIRTALYEKVLDKIVNYLIENK----SKYYEKEAL 158 (813)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHhhhccccCCCCCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhhhhh
Confidence 6555444433222 2455667899999999999999999999997 699999999
Q ss_pred cCCcc-HHHHHHhhccccceeccc
Q psy1888 198 LMSDE-AIVILGKLLSLNVIDCNL 220 (386)
Q Consensus 198 L~d~E-~~vL~~lL~GLn~IdF~l 220 (386)
|+||. +.+++++|+|.|++.|.-
T Consensus 159 L~DPV~GpilAsLlvgPCaleYtk 182 (813)
T KOG1648|consen 159 LLDPVKGPILASLLVGPCALEYTK 182 (813)
T ss_pred hcCcccchHHHHHhccchhheehh
Confidence 99998 589999999999999853
No 5
>smart00593 RUN domain involved in Ras-like GTPase signaling.
Probab=99.68 E-value=4.5e-17 Score=125.82 Aligned_cols=63 Identities=40% Similarity=0.665 Sum_probs=59.6
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhCchhHHHhcccccCccCCccH-HHHHHhhccccceecccccC
Q psy1888 160 ARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEA-IVILGKLLSLNVIDCNLCVK 223 (386)
Q Consensus 160 gRAWIRlAL~eK~Ls~yL~~Ll~n~~~lL~~~Ye~~AlL~d~E~-~vL~~lL~GLn~IdF~l~lk 223 (386)
+|||||+|||+|+|+.|++.++.+. .++++||++||||+++|. .+|.++|.||++++|+++++
T Consensus 1 ~ra~ir~aLne~~L~~~l~~l~~~~-~~~~~~Y~~~A~l~~~~~~~~l~~~L~~L~~~~F~l~~~ 64 (64)
T smart00593 1 FRAWIRLALNEKLLSSWLNLLLSDE-ELLSKYYEPWAFLRDPEEGEQLLGLLVGLSALDFNLPVD 64 (64)
T ss_pred CcHHHHHHHHHhHHHHHHHHHHhCh-HHHHHhCCCCceeeChhHHHHHHHHHhCccccceecCCC
Confidence 6999999999999999999999987 799999999999999875 99999999999999999875
No 6
>KOG3759|consensus
Probab=97.31 E-value=0.00067 Score=70.51 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=61.4
Q ss_pred CccchhHHHHHHHHhhhhHHHHHHHHHhCchhHHHhcccccCccCCccHHHHHHhhccccceecccccC
Q psy1888 155 THMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVK 223 (386)
Q Consensus 155 T~~GRgRAWIRlAL~eK~Ls~yL~~Ll~n~~~lL~~~Ye~~AlL~d~E~~vL~~lL~GLn~IdF~l~lk 223 (386)
+.-.--.||+-.|||+++|-+++..++... .++..||.+|+.+..--..-.+.++.+|...+|++++|
T Consensus 545 S~dah~KAfVcaaLNe~~Lv~WlnlI~~~~-~lVet~Y~~wSYvArTGfe~~l~ll~~Ls~~~f~LPVD 612 (621)
T KOG3759|consen 545 SADAHLKAFVCAALNEQRLVSWLNLICKCG-SLVETHYQPWSYVARTGFESALNLLSRLSSLKFSLPVD 612 (621)
T ss_pred cccHHHHHHHHHHhhHHHHHHHHHHHHhhh-hHhHhhcCcchHHHhhhHHHHHHHHHHHHhcccCCchH
Confidence 344456799999999999999999999997 89999999999999988888899999999999999986
No 7
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.52 E-value=0.22 Score=40.64 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
+|+....-=.|+.-||..|++++..|..+.++...|+..-.+|.+|++++|+|-..
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~ 64 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45555555566777999999999999999999999999999999999999987553
No 8
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.46 E-value=0.25 Score=39.56 Aligned_cols=56 Identities=25% Similarity=0.308 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
-+|+-...-=.|+.-||..|++|++.|..+..|...|.-...+|+.|++++|+|-.
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666667888899999999999999999999889999999999999998754
No 9
>KOG2222|consensus
Probab=94.42 E-value=0.031 Score=58.97 Aligned_cols=121 Identities=18% Similarity=0.282 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCC-CCCCchHHHHHHHhh----------------------------CCcccc-hhhhhc
Q psy1888 99 QHFFIVLEHVLRHGLKPKKGLLG-PKKELWDILQLVEKL----------------------------NPEASD-ITASVR 148 (386)
Q Consensus 99 ~~LC~~LE~iL~HGLK~k~~~~g-~~~~fW~~l~~~~k~----------------------------~P~~~d-~i~~I~ 148 (386)
.+|..++-+++-||.|.. .|+| ..-..|.|++.+... .|+ + +.++|+
T Consensus 628 g~la~a~k~~ldhgik~~-a~~~s~~~hpw~fied~a~~~vekdf~svys~lvlcktyrldedgkiltpe--ellfr~vq 704 (848)
T KOG2222|consen 628 GRLANAFKAFLDHGIKEN-AFLGSGAIHPWLFIEDAATREVEKDFESVYSRLVLCKTYRLDEDGKILTPE--ELLFRCVQ 704 (848)
T ss_pred hhhHHHHHHHHHcccccc-ccccCcCCChhHHHHHHHHHHHHhhHHHHHHhhhhhhheecccCCcccCHH--HHHHHHHH
Confidence 358889999999999986 4555 345679999865421 110 1 112222
Q ss_pred cCC------CCCCccchhHHHHHHHHhhhhHHHHHHHHHhCc--hhHHHhcccccCccCCccHHHHHHhhccccceeccc
Q psy1888 149 DLP------TVKTHMGRARAWLRLALMQKKLADYLQVLVDHR--DDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNL 220 (386)
Q Consensus 149 ~L~------~I~T~~GRgRAWIRlAL~eK~Ls~yL~~Ll~n~--~~lL~~~Ye~~AlL~d~E~~vL~~lL~GLn~IdF~l 220 (386)
.+. +...+ -|-|..|-+-||+.++.-+|..|+... +.+..+||++|||+.+|--.++-.-|.-|+...|++
T Consensus 705 ~in~shd~~~a~~d-vklrsli~lglneq~ihlw~dllca~tqhe~i~nk~yhswafi~sp~w~qikcdlrilsqfafnl 783 (848)
T KOG2222|consen 705 AINDSHDAAHAHMD-VKLRSLICLGLNEQCIHLWFDLLCAATQHEEIRNKWYHSWAFIDSPAWRQIKCDLRILSQFAFNL 783 (848)
T ss_pred HHhcchhhhhhhhc-hhhhhheeecccHHHHHHHHHHHHhcccHHHHHHHHhhhhheecCccceeeehhHhHHhhhhhcC
Confidence 111 11122 267999999999999999999987441 267899999999999997444444444455555555
Q ss_pred ccC
Q psy1888 221 CVK 223 (386)
Q Consensus 221 ~lk 223 (386)
..+
T Consensus 784 n~~ 786 (848)
T KOG2222|consen 784 NMD 786 (848)
T ss_pred Ccc
Confidence 543
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.07 E-value=0.73 Score=45.25 Aligned_cols=67 Identities=16% Similarity=0.367 Sum_probs=37.7
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHH-hHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQV-ESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANS 326 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~-~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~ 326 (386)
+..-++.=.+||+-|+.|+.++..+..+. .....-......++..++..|..+..|...+.-+..+.
T Consensus 13 la~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 13 LASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNL 80 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence 55556666677777777777777666552 22222334456666666777777777776666655543
No 11
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.04 E-value=0.67 Score=37.14 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=33.5
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
|++.+|++.+..+-..++.|+..+..++++-...+....+|++|+++++++-.
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666665555555566677777777775543
No 12
>KOG0804|consensus
Probab=92.13 E-value=2.5 Score=44.65 Aligned_cols=112 Identities=18% Similarity=0.274 Sum_probs=49.3
Q ss_pred HHHHHhhhHHHHHHHHHH-HhHHHHHHHHhHhHhh-------hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy1888 261 SLVLDQKNYIEELNRHLN-ATVGNLQTQVESLTTT-------NALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSN 332 (386)
Q Consensus 261 ~~~ldQK~ylEElnr~l~-~~~~~l~~~~~~l~~~-------n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~ 332 (386)
..+=.|++|.|+..-.++ +|+.+..+..+.+-.. ++-+..+-.++.+....+|.....+.+|....++.-.+
T Consensus 328 sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~ 407 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKK 407 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578899986655454 4777754444433322 22222222233334444444444443333322211000
Q ss_pred hhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 333 LSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDI 372 (386)
Q Consensus 333 el~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~ 372 (386)
-.+.|...+.-++.--.-+++.+..|+..|-.|..||.|+
T Consensus 408 l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 408 LIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 0111111122221112233334556666666788887776
No 13
>KOG2080|consensus
Probab=91.86 E-value=0.32 Score=54.53 Aligned_cols=111 Identities=21% Similarity=0.304 Sum_probs=69.6
Q ss_pred cceeeecCcce--eecc--cCCcccccCCCCCCCCCCCCCC--cc-------cCCChhHHHHHHHHHHHHHH--------
Q psy1888 18 NFRVSVDGEWL--CLKQ--LDDVEVRVRDPPELRSPSPEPP--LF-------VARNPVIIERRNLVNISKLI-------- 76 (386)
Q Consensus 18 ~~~~~~~g~~~--~l~~--l~~~~~~s~~~~~~~~~~~~~~--~~-------~~~~p~~ieR~NLl~~lK~s-------- 76 (386)
.+.|+|+|.|| .|++ +++....+|.++||.++-|+-. |. -+-.++..-|+--++..-..
T Consensus 512 r~gVr~eg~~p~~~l~tt~~~~~~~~sp~~~~~~~~~~r~k~qKl~~~~~~~qd~r~n~~~revflnrf~~mf~~ye~fv 591 (1295)
T KOG2080|consen 512 RTGVRYEGAWPVHQLNTTLLDGANLISPAPSPWRQRYPRLKDQKLGCNENELQDYRLNSQYREVFLNRFTQMFADYEQFV 591 (1295)
T ss_pred ccCccccCCCcceeccccccccccccCcCCCccccccchhhhhccCcccchhheecchhHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999 5666 8999999999999998555444 22 23345666676666654322
Q ss_pred --HHHHHHHhhhcCC-cc--------cCC-------------ChHHHHHHH-HHHHHHhcC---------CCCCCCCCCC
Q psy1888 77 --VKELIETSQKHGR-ML--------DSD-------------HMPLQHFFI-VLEHVLRHG---------LKPKKGLLGP 122 (386)
Q Consensus 77 --VK~LiE~~~~~~r-~I--------~dd-------------~~~L~~LC~-~LE~iL~HG---------LK~k~~~~g~ 122 (386)
+.+.+++-.+..+ +. .|. +.-+..||+ .+|++|-|| ||.+.|
T Consensus 592 i~~~Q~~eew~tnre~mqnfDK~s~~sdQp~h~~afls~fle~qlfasfidnli~~~w~~~l~fd~rv~~lr~~hg---- 667 (1295)
T KOG2080|consen 592 IQPQQDLEEWKTNREQMQNFDKMSFLSDQPEHLLAFLSRFLENQLFASFIDNLIECIWAHGLLFDQRVDLLRLKHG---- 667 (1295)
T ss_pred hhHHHHHHHHHhhHHHHhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcc----
Confidence 2334444333222 11 111 112567998 999999999 555444
Q ss_pred CCCchHHHHH
Q psy1888 123 KKELWDILQL 132 (386)
Q Consensus 123 ~~~fW~~l~~ 132 (386)
+...|.....
T Consensus 668 ~s~~~~ts~~ 677 (1295)
T KOG2080|consen 668 KSSLWNTSLQ 677 (1295)
T ss_pred cchhHHHHHH
Confidence 5677876654
No 14
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.86 E-value=2.8 Score=42.30 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=58.5
Q ss_pred hhHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhH----HHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy1888 259 NMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMR----EDLSIAEKNLRILIQENENLKNQLANSSQHT 330 (386)
Q Consensus 259 ~~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~----eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~ 330 (386)
++..+=.....+||=|.+|....+.|....+.+++.-..+. ++|..|+..|..|++|+..-.+++....+.+
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEI 236 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEI 236 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555678999999999999999999888888777663 6799999999999999999888877544443
No 15
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=91.63 E-value=2.4 Score=45.54 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=73.4
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhc
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVG 339 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~ 339 (386)
+..++.|+...+-.+.+....-..|+.|++..+++...+.+||..|+.+|..||+|++--|. =-|-|++
T Consensus 422 I~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~-----------NYE~QLs 490 (518)
T PF10212_consen 422 IEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRR-----------NYEEQLS 490 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hHHHHHH
Confidence 56667777777777777888888899999999999999999999999999999999988663 2345888
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 340 LKAEMEVAMKLLERDVHQKQDTIIELR 366 (386)
Q Consensus 340 ~k~e~e~a~kllekd~~ekqdt~~~lr 366 (386)
+=.|.-.+|- .++...+|+|.+|+
T Consensus 491 ~MSEHLasmN---eqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 491 MMSEHLASMN---EQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 8888777762 23344567777776
No 16
>KOG0995|consensus
Probab=91.41 E-value=2 Score=46.42 Aligned_cols=99 Identities=18% Similarity=0.319 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHH---HHHHHHHHHHHHHHHHHHhhhccccccc---hhhhhhcchH
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALMREDLSI---AEKNLRILIQENENLKNQLANSSQHTSN---LSVHEVGLKA 342 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~---a~~~i~~lq~e~~~l~~e~~~~~~~~~~---el~~q~~~k~ 342 (386)
|-.|+-+.++...+..-.+++.++++|..+.|.++. -..++..|.+.-..|+ .|+-| -+...-+-++
T Consensus 218 ~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~-------~D~nK~~~y~~~~~~k~~ 290 (581)
T KOG0995|consen 218 LEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQ-------DDVNKFQAYVSQMKSKKQ 290 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-------hHHHHHHHHHHHHHhhhH
Confidence 556677777777777777777777777777666552 2344555555444443 23222 2233335677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1888 343 EMEVAMKLLERDVHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 343 e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~ 374 (386)
.|+-+|+.|-.+|.+|..-+..|+++-++.|.
T Consensus 291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998888888887776654
No 17
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.30 E-value=9.1 Score=38.48 Aligned_cols=65 Identities=20% Similarity=0.212 Sum_probs=34.6
Q ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 261 SLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 261 ~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
......+.+.|=+-.+++.-...|+..++.+....+.+.+.++.++...-.+.+....|+.|...
T Consensus 131 aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~ 195 (325)
T PF08317_consen 131 ARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELEN 195 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555555555555555544443
No 18
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.17 E-value=1.1 Score=42.54 Aligned_cols=54 Identities=26% Similarity=0.315 Sum_probs=36.3
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhh----HHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTN----ALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n----~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
+..-.++.++++++++++++..+. +.+.+.++.++..|.+|.+||.+|++|+..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567777777777777776553 344555667777777788888887765544
No 19
>PRK11637 AmiB activator; Provisional
Probab=90.91 E-value=8.5 Score=39.92 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=22.1
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
++.++..++.+++.++..-.....+++..+..|..+++++...+..+.
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444433
No 20
>KOG0963|consensus
Probab=90.84 E-value=4.9 Score=43.93 Aligned_cols=115 Identities=26% Similarity=0.322 Sum_probs=80.5
Q ss_pred hhHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhH------------------HhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 259 NMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNA------------------LMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 259 ~~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~------------------~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
..+-+.+++.-+-+-|+.++.++..+|..+.....+-. ...-+|+-|+.+|..|+.|.+.|+
T Consensus 183 ~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~ 262 (629)
T KOG0963|consen 183 REAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLR 262 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777665554433322 224568899999999999999999
Q ss_pred HHhhh--cccc-----------------------ccchhh-hhhcchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 321 NQLAN--SSQH-----------------------TSNLSV-HEVGLKAEMEV---AMKLLERDVHQKQDTIIELRRQLED 371 (386)
Q Consensus 321 ~e~~~--~~~~-----------------------~~~el~-~q~~~k~e~e~---a~kllekd~~ekqdt~~~lr~ql~~ 371 (386)
++... +..+ +.++++ +|-+..+|||. ++.-||+....|--.|..|+.+|..
T Consensus 263 ~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 263 EQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 98873 2211 111221 45577777775 6899999999999999999999875
Q ss_pred Hh
Q psy1888 372 IK 373 (386)
Q Consensus 372 ~k 373 (386)
..
T Consensus 343 ~s 344 (629)
T KOG0963|consen 343 RS 344 (629)
T ss_pred hc
Confidence 53
No 21
>PRK09039 hypothetical protein; Validated
Probab=90.78 E-value=6.2 Score=40.21 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1888 342 AEMEVAMKLLERDVHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 342 ~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~ 374 (386)
..++.++...|+...++|..|..|++.|+...+
T Consensus 154 a~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~ 186 (343)
T PRK09039 154 AALEAALDASEKRDRESQAKIADLGRRLNVALA 186 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888888888888888888888887753
No 22
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.70 E-value=7.8 Score=38.02 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
+-+++-.....++.+++.....-.......++|+...+..|..|+.++..++..+..
T Consensus 185 ~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~ 241 (312)
T PF00038_consen 185 NREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNAS 241 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhh
Confidence 345555566677777888887777777788888888888888888888888865543
No 23
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.61 E-value=3.4 Score=45.18 Aligned_cols=90 Identities=18% Similarity=0.339 Sum_probs=63.7
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHH-HHHHHHHHHHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAE-MEVAMKLLERDVHQ 357 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e-~e~a~kllekd~~e 357 (386)
..+..+-.+++.++.+|+.|+.+++.-+..|.+|..++.+++.+.. .+.++..+-+ ++.-+.-||+.+.+
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~---------~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR---------DKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444567777778888888777777666666667666666654322 2223333333 55678999999999
Q ss_pred HHHHHHHHHHHHHHHhHhHH
Q psy1888 358 KQDTIIELRRQLEDIKMINL 377 (386)
Q Consensus 358 kqdt~~~lr~ql~~~k~in~ 377 (386)
|--.+..|..-|...+.++.
T Consensus 493 ~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 493 KKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988775
No 24
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.32 E-value=7.2 Score=34.16 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=11.7
Q ss_pred HHHhhhHHHHHHHHHHH
Q psy1888 263 VLDQKNYIEELNRHLNA 279 (386)
Q Consensus 263 ~ldQK~ylEElnr~l~~ 279 (386)
--.|.+|=.|++.|-+.
T Consensus 41 ~~Aq~~YE~El~~Ha~~ 57 (132)
T PF07926_consen 41 QEAQQKYERELVKHAED 57 (132)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 35677777777777663
No 25
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=90.08 E-value=4.1 Score=39.86 Aligned_cols=38 Identities=32% Similarity=0.586 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhh
Q psy1888 347 AMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQ 384 (386)
Q Consensus 347 a~kllekd~~ekqdt~~~lr~ql~~~k~in~~~~~~~~ 384 (386)
...=||+++..=+.++..||++++.+|+=|+.||+|++
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668888888889999999999999999999999987
No 26
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=89.86 E-value=5.1 Score=45.15 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q psy1888 345 EVAMKLLERDVHQKQDTIIELRRQLEDIKMIN 376 (386)
Q Consensus 345 e~a~kllekd~~ekqdt~~~lr~ql~~~k~in 376 (386)
|+.++-.|+| +..+-+=++=+|||+.||.|-
T Consensus 163 eleir~~E~~-~~~~~ae~a~kqhle~vkkia 193 (769)
T PF05911_consen 163 ELEIRNEERE-YSRRAAEAASKQHLESVKKIA 193 (769)
T ss_pred HHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHH
Confidence 3445666777 556666678899999999985
No 27
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=89.83 E-value=5.3 Score=39.44 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=50.2
Q ss_pred HHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHhh
Q psy1888 264 LDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIA-----------EKNLRILIQENENLKNQLA 324 (386)
Q Consensus 264 ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a-----------~~~i~~lq~e~~~l~~e~~ 324 (386)
=+-|.-|+|..-..++.++.|+.+++.++....+..+||..- .-.|.+|..++.+++.+..
T Consensus 66 ~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qq 137 (258)
T PF15397_consen 66 QQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQ 137 (258)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888889999999999999999999999999998732 2378899999888887655
No 28
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.75 E-value=15 Score=37.13 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=48.1
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
++.+...+.+.|=+..+++.-...|...++.+....+.+...++.++...-.+.+....|+.|...
T Consensus 125 ~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~ 190 (312)
T smart00787 125 FARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQ 190 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777777777777777777777777777777777777776666666664
No 29
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.33 E-value=12 Score=33.64 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 344 MEVAMKLLERDVHQKQDTIIELRRQLEDIK 373 (386)
Q Consensus 344 ~e~a~kllekd~~ekqdt~~~lr~ql~~~k 373 (386)
+|..|+-||...-+=..-+..|..|+.++|
T Consensus 113 ~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 113 FERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 455555555544444444444555544443
No 30
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.29 E-value=14 Score=32.48 Aligned_cols=92 Identities=23% Similarity=0.373 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHH
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAM 348 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~ 348 (386)
.+.--.|.+++.+..++.++..++.+...+.+ -|+.|-.+++.++...+.. .+++.++. .+.+..+.+.
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~-------Eiv~l~~~~e~~~~~~~~~-~~L~~el~---~l~~ry~t~L 88 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELRE-------EIVKLMEENEELRALKKEV-EELEQELE---ELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHH
Confidence 34444566777777777777777776555544 4555555555554322110 11122111 2445555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy1888 349 KLLERDVHQKQDTIIELRRQLEDIKMI 375 (386)
Q Consensus 349 kllekd~~ekqdt~~~lr~ql~~~k~i 375 (386)
.|| -||-.-...||--+.|+|.+
T Consensus 89 ell----GEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 89 ELL----GEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHh----cchHHHHHHHHHHHHHHHHH
Confidence 665 56667778889889999864
No 31
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.28 E-value=6.7 Score=38.30 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=29.9
Q ss_pred HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 278 NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
..+...+..+..+..+.-.+.+.+++++++.+.+++.+++.++++..
T Consensus 16 D~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~ 62 (239)
T COG1579 16 DLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVS 62 (239)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666677777777777777777777666555
No 32
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.15 E-value=11 Score=33.85 Aligned_cols=42 Identities=14% Similarity=0.348 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhh
Q psy1888 343 EMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQ 384 (386)
Q Consensus 343 e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in~~~~~~~~ 384 (386)
-+..-|.+||.++-+....+......|.++..-.=++=++++
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVK 118 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 355567888888888888777777777766544333334433
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.09 E-value=5.7 Score=44.30 Aligned_cols=92 Identities=20% Similarity=0.293 Sum_probs=70.0
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------cc---ccccchhhhhhcchHHHHH
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN--------------SS---QHTSNLSVHEVGLKAEMEV 346 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~--------------~~---~~~~~el~~q~~~k~e~e~ 346 (386)
+.+|...++.+-.++..||......+..+..|.+.++..... ++ .++|+-|--+..+|.++=-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfs 622 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFS 622 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 677889999999999999999999999999988877754111 11 2245656666777777655
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy1888 347 A-------MKLLERDVHQKQDTIIELRRQLEDIKMI 375 (386)
Q Consensus 347 a-------~kllekd~~ekqdt~~~lr~ql~~~k~i 375 (386)
| ++.++..+..|-+-|+.|++-+.++=++
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av 658 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAV 658 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 6778888999999999999988887654
No 34
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.47 E-value=19 Score=35.79 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=65.3
Q ss_pred hhHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh--------h-----
Q psy1888 259 NMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA--------N----- 325 (386)
Q Consensus 259 ~~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~--------~----- 325 (386)
.+..+-..+.=++.=.-.|.+++.+++.+++++++.+.+.+.++...+..|.++.+-.....+=+. +
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~ 118 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATS 118 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhH
Confidence 355555555555555556677777777777777777776666655555444444433322222111 0
Q ss_pred ---------------cc-----------------------------ccccchhhhhhcchHHHHHHHHHHHHHHHHHHHH
Q psy1888 326 ---------------SS-----------------------------QHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDT 361 (386)
Q Consensus 326 ---------------~~-----------------------------~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt 361 (386)
+| ..++++++-.+.+.+|.|.=++-|++...||-|-
T Consensus 119 Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l 198 (265)
T COG3883 119 YIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNAL 198 (265)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0124456666677777777777777777777777
Q ss_pred HHHHHHHHH
Q psy1888 362 IIELRRQLE 370 (386)
Q Consensus 362 ~~~lr~ql~ 370 (386)
+..|-....
T Consensus 199 ~~~~aa~~a 207 (265)
T COG3883 199 IAALAAKEA 207 (265)
T ss_pred HHHHHHHHH
Confidence 777665544
No 35
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.26 E-value=3.1 Score=44.23 Aligned_cols=85 Identities=20% Similarity=0.287 Sum_probs=52.1
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHH
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLL 351 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kll 351 (386)
+..|-|-++++++..+++.+.++|..+++|-+. |++....+. +.+...++ +-++|+......|
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~-------L~~r~~~id-------~~i~~av~---~~~~~~~~~~~ql 121 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENER-------LQKREQSID-------QQIQQAVQ---SETQELTKEIEQL 121 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhHH-------HHHHHHHH---hhhHHHHHHHHHH
Confidence 344556677888888888888888877666442 222221111 11111111 1345566666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy1888 352 ERDVHQKQDTIIELRRQLEDIK 373 (386)
Q Consensus 352 ekd~~ekqdt~~~lr~ql~~~k 373 (386)
..+..+-++.|..|.+||+++.
T Consensus 122 ~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 122 KSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 8888888888999999998754
No 36
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.90 E-value=14 Score=32.70 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=26.6
Q ss_pred HHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 263 VLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 263 ~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
++.+...--+....++.++..+...++.++..+..++++++.+...+..++.....+.
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~ 100 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQ 100 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433334444444444444444555555555555554444444444444444443
No 37
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.59 E-value=16 Score=40.05 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy1888 348 MKLLERDVHQKQDTIIELRRQLEDIKMINLEMY 380 (386)
Q Consensus 348 ~kllekd~~ekqdt~~~lr~ql~~~k~in~~~~ 380 (386)
|.-||.-+......++.|-+|++.++.-=++-|
T Consensus 396 i~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~ 428 (594)
T PF05667_consen 396 IAKLQALVEASEQRLVELAQQWEKHRAPLIEEY 428 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444444444444455555555554444333333
No 38
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.47 E-value=6.6 Score=39.56 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhHH
Q psy1888 356 HQKQDTIIELRRQLEDIKMINL 377 (386)
Q Consensus 356 ~ekqdt~~~lr~ql~~~k~in~ 377 (386)
..=...+...+.||+.++..|+
T Consensus 116 ~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHhcCc
Confidence 3333445567778888887775
No 39
>PRK09039 hypothetical protein; Validated
Probab=86.46 E-value=7.1 Score=39.75 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=5.8
Q ss_pred CCCCCCcccc
Q psy1888 226 DLDCQQGVID 235 (386)
Q Consensus 226 ~LD~~~~vId 235 (386)
..|.|||-+|
T Consensus 12 ~~~~wpg~vd 21 (343)
T PRK09039 12 GVDYWPGFVD 21 (343)
T ss_pred CCCCCchHHH
Confidence 4566666555
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.41 E-value=10 Score=42.28 Aligned_cols=92 Identities=22% Similarity=0.331 Sum_probs=62.5
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc------------------cchhhhhhcchHHHH
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHT------------------SNLSVHEVGLKAEME 345 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~------------------~~el~~q~~~k~e~e 345 (386)
||.|+.+|..+-.+.|.-++.+..++.+.+.....+..++...|..- ..--|..-..+++||
T Consensus 472 Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE 551 (697)
T PF09726_consen 472 LQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLE 551 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHH
Confidence 56666666666666666666666777777776666666665422110 011222335678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy1888 346 VAMKLLERDVHQKQDTIIELRRQLEDIKMI 375 (386)
Q Consensus 346 ~a~kllekd~~ekqdt~~~lr~ql~~~k~i 375 (386)
..++-|..|+..|+|.+..|.+++.+.+..
T Consensus 552 ~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 552 SELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888766655
No 41
>KOG0971|consensus
Probab=86.31 E-value=11 Score=43.29 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=22.0
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHH
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQEN 316 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~ 316 (386)
..+.+.++.....++++++..|...|..|||+.
T Consensus 408 k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 408 KNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666777777777777777764
No 42
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=86.28 E-value=8.3 Score=43.53 Aligned_cols=105 Identities=21% Similarity=0.220 Sum_probs=68.6
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHH
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVH 356 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ 356 (386)
+++.-.+|...+.+.+......+.+|..+...|.+|+.+++..+ .+....|-+|+-+...+..++...+.+|.+++
T Consensus 601 le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~k----eS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~ 676 (769)
T PF05911_consen 601 LESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAK----ESNSLAETQLKAMKESYESLETRLKDLEAEAE 676 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 33334444444444444444455555555566666666665544 24444556666666677778888888899999
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHhhc
Q psy1888 357 QKQDTIIELRRQLEDIKMINLEMYKKLQA 385 (386)
Q Consensus 357 ekqdt~~~lr~ql~~~k~in~~~~~~~~~ 385 (386)
+-+--+.+|--+|++-|..--+.-.|.++
T Consensus 677 ~l~~Ki~~Le~Ele~er~~~~e~~~kc~~ 705 (769)
T PF05911_consen 677 ELQSKISSLEEELEKERALSEELEAKCRE 705 (769)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 99999999999999988877766655543
No 43
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.04 E-value=24 Score=35.48 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 299 REDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 299 ~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
+++|+.++..+.++..+++..+.+...
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~e 234 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAE 234 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666655544443
No 44
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.97 E-value=5.4 Score=38.01 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=35.5
Q ss_pred HHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 274 NRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 274 nr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
...+...+.+....+.+|+.+|..+++||+.+++.+..|..+++.++.
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666677778888888888888888888888888877764
No 45
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.89 E-value=17 Score=34.86 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=16.1
Q ss_pred HHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 283 NLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 283 ~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
.++.+++.+.......+++++..+..+.++++++...+
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 46
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=85.59 E-value=22 Score=32.60 Aligned_cols=105 Identities=18% Similarity=0.288 Sum_probs=48.7
Q ss_pred HHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhc----
Q psy1888 264 LDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVG---- 339 (386)
Q Consensus 264 ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~---- 339 (386)
+..|..+|.......+.+++|...+...+ +.+.+.-+.....|+.|.+.+++++...-.++..++-+.+.
T Consensus 43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~------k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~ 116 (177)
T PF07798_consen 43 LVTKSDLENQEYLFKAAIAELRSELQNSR------KSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKG 116 (177)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44566666666666677777666665444 22223223333344444444444333211111111111110
Q ss_pred ----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q psy1888 340 ----LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINL 377 (386)
Q Consensus 340 ----~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in~ 377 (386)
...+++..++-+...|... |-.||-+++.+|.=.+
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~e---i~~lr~~iE~~K~~~l 155 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTE---IANLRTEIESLKWDTL 155 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 1122333344444444322 4578999888775444
No 47
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.21 E-value=15 Score=33.45 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=14.3
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQEN 316 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~ 316 (386)
..+.+++..++.++.......+++...+..+..+.+..
T Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 139 (191)
T PF04156_consen 102 ERIQELESELEKLKEDLQELRELLKSVEERLDSLDESI 139 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 48
>KOG0243|consensus
Probab=85.11 E-value=16 Score=42.50 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=29.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhc
Q psy1888 339 GLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQA 385 (386)
Q Consensus 339 ~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in~~~~~~~~~ 385 (386)
.++.++--.++-.|..++ |-...||++++..+.-...+|.|+..
T Consensus 514 ~~~e~ii~~~~~se~~l~---~~a~~l~~~~~~s~~d~s~l~~kld~ 557 (1041)
T KOG0243|consen 514 KEEEEIISQQEKSEEKLV---DRATKLRRSLEESQDDLSSLFEKLDR 557 (1041)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334443334555555544 44679999999999988888888753
No 49
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=85.03 E-value=28 Score=31.12 Aligned_cols=113 Identities=21% Similarity=0.288 Sum_probs=71.4
Q ss_pred HHHHHHHHHhHHHHHHHHhHhHhhhHHh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-------ccchhhhhhcchH
Q psy1888 271 EELNRHLNATVGNLQTQVESLTTTNALM-REDLSIAEKNLRILIQENENLKNQLANSSQH-------TSNLSVHEVGLKA 342 (386)
Q Consensus 271 EElnr~l~~~~~~l~~~~~~l~~~n~~~-~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~-------~~~el~~q~~~k~ 342 (386)
|-+...+-++|+.+++---.|+..+.=- -+-+.+|...+++==+.+..||.-+...... +.-+..-|-++=.
T Consensus 11 eali~~lFa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~ 90 (131)
T PF04859_consen 11 EALIAKLFATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIK 90 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHH
Confidence 3344444455555444333333222111 3446677777775555577777655532221 2334444445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHh
Q psy1888 343 EMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKL 383 (386)
Q Consensus 343 e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in~~~~~~~ 383 (386)
-.|..++=||+++..|.--|..||++|++...-|..|-++|
T Consensus 91 ~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 91 TYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 68889999999999999999999999999999998876553
No 50
>KOG0982|consensus
Probab=84.46 E-value=15 Score=38.86 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=58.5
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHH
Q psy1888 280 TVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQ 359 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekq 359 (386)
++.++|++++.++.+|+.+....+..+..+-+|.++.+.+-.++...|..+.- ...++.+|--++.-.+++-..-|
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~----eq~l~~rm~d~Lrrfq~ekeatq 373 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLIC----EQKLRVRMNDILRRFQEEKEATQ 373 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHH
Confidence 34457777777777777777777777777777777666655544443322111 11233344444444666666677
Q ss_pred HHHHHHHHHHHHHhHhHHH
Q psy1888 360 DTIIELRRQLEDIKMINLE 378 (386)
Q Consensus 360 dt~~~lr~ql~~~k~in~~ 378 (386)
.-|..||++|+-+.---++
T Consensus 374 ELieelrkelehlr~~kl~ 392 (502)
T KOG0982|consen 374 ELIEELRKELEHLRRRKLV 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888999999877654443
No 51
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=83.97 E-value=3.4 Score=32.68 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=38.7
Q ss_pred HHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchh
Q psy1888 276 HLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLS 334 (386)
Q Consensus 276 ~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el 334 (386)
.|+.+|..|-...+.|..+|..+.++++ .++.|..+|++.+...|.++|..+
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~-------~~~~ER~~L~ekne~Ar~rvEamI 55 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEK-------TWREERAQLLEKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888866655 577788888777777777766643
No 52
>PRK02224 chromosome segregation protein; Provisional
Probab=83.20 E-value=22 Score=39.92 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=8.5
Q ss_pred ceecccceeeecC
Q psy1888 13 TIYLCNFRVSVDG 25 (386)
Q Consensus 13 ~~~~~~~~~~~~g 25 (386)
.|++.||+ +|.+
T Consensus 5 ~l~l~nf~-~~~~ 16 (880)
T PRK02224 5 RVRLENFK-CYAD 16 (880)
T ss_pred EEEEECcc-cccc
Confidence 58889986 5544
No 53
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.96 E-value=23 Score=35.61 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=15.2
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENE 317 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~ 317 (386)
.+...++++++.++.+-...+.+++..+..+..+++++.
T Consensus 137 ~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~ 175 (423)
T TIGR01843 137 SRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLE 175 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444443333333333333333333333333
No 54
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=82.55 E-value=3.5 Score=35.68 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=29.4
Q ss_pred HHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy1888 285 QTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSN 332 (386)
Q Consensus 285 ~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~ 332 (386)
=.++..++.+-..+-++++.-|..+.+|-+||+.|+-||...|..+++
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555666777777777777777766665543
No 55
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.52 E-value=47 Score=31.81 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=24.9
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQ 328 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~ 328 (386)
+..+++..+..+..++.+++..+..|...+++...++.++...+.
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555544333
No 56
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=82.51 E-value=3.6 Score=35.36 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=16.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy1888 297 LMREDLSIAEKNLRILIQENENLKNQLANSSQH 329 (386)
Q Consensus 297 ~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~ 329 (386)
.+-.+++.-|..+.+|-+||+.|+-||...|+.
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555555544443
No 57
>KOG1029|consensus
Probab=82.35 E-value=13 Score=42.04 Aligned_cols=116 Identities=18% Similarity=0.184 Sum_probs=70.2
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHh----------------------------HHHHHHHHHHHHH
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALM----------------------------REDLSIAEKNLRI 311 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~----------------------------~eel~~a~~~i~~ 311 (386)
....+.|||--.|.+-.+++..++|+.+++.|.-..+.+ .-|......+|-+
T Consensus 418 ~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE 497 (1118)
T KOG1029|consen 418 RQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKE 497 (1118)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 677899999888888777777777666666655443333 2223333445556
Q ss_pred HHHHHHHHHHHhhhcccc-----------c--cchhhhhhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1888 312 LIQENENLKNQLANSSQH-----------T--SNLSVHEVGL----KAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 312 lq~e~~~l~~e~~~~~~~-----------~--~~el~~q~~~----k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~ 374 (386)
+|+-+..|-.|.+..... . ..+|+.-..- .+-++-++.-|+|++..|-.-|.++--||+++|.
T Consensus 498 ~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~ 577 (1118)
T KOG1029|consen 498 LQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKE 577 (1118)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 666665555554421100 0 0122221112 2224445567889999999999999999999987
Q ss_pred h
Q psy1888 375 I 375 (386)
Q Consensus 375 i 375 (386)
+
T Consensus 578 ~ 578 (1118)
T KOG1029|consen 578 D 578 (1118)
T ss_pred H
Confidence 5
No 58
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=82.12 E-value=20 Score=36.38 Aligned_cols=43 Identities=23% Similarity=0.418 Sum_probs=26.7
Q ss_pred HHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 282 GNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 282 ~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
.+|+.++.+|..+|..+|.||+.-+.....|++++..||+.+-
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv 65 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASV 65 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666665443
No 59
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=81.92 E-value=5.1 Score=30.64 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=28.0
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQEN 316 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~ 316 (386)
..+..|+.+++.|+.+|..++.++...+..+..|..++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56777888889999999988877776555555555544
No 60
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=81.78 E-value=12 Score=29.79 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 302 LSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 302 l~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
|..|-..+.+|++|++.++.|+.
T Consensus 42 l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 42 LGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777776654
No 61
>KOG0996|consensus
Probab=81.77 E-value=22 Score=41.84 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=44.6
Q ss_pred hhHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHH
Q psy1888 259 NMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQE 315 (386)
Q Consensus 259 ~~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e 315 (386)
......+|.+|++|..+.+...+..|.-+++.++.+-..+.++++.++.+|.++...
T Consensus 793 ~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 793 KARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378889999999999999988888877778877777777777766666666665554
No 62
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=81.70 E-value=49 Score=31.47 Aligned_cols=52 Identities=27% Similarity=0.299 Sum_probs=35.8
Q ss_pred HHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHH
Q psy1888 263 VLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQ 314 (386)
Q Consensus 263 ~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~ 314 (386)
++.+-.=++-=|+.|....+.|+..++..+..|+++.++++..+..+..+|.
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qq 57 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQ 57 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555677777777777888888888888877777776666666553
No 63
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=81.68 E-value=40 Score=30.42 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=20.5
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 280 TVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
.|-+|.+.++..++....+..+.+-++..|..|++++..+.++..
T Consensus 25 ~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~ 69 (140)
T PF10473_consen 25 HVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELN 69 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444555555555555544444
No 64
>KOG0161|consensus
Probab=81.53 E-value=24 Score=43.76 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=28.8
Q ss_pred HHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 264 LDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 264 ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
-.||.-++...+..+.++..++++++.....-+.+..++......|.+|+++++.-|
T Consensus 1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAER 1117 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445556666666665555555544444444445555555555444
No 65
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=81.33 E-value=33 Score=39.19 Aligned_cols=8 Identities=50% Similarity=0.650 Sum_probs=4.8
Q ss_pred ceecccce
Q psy1888 13 TIYLCNFR 20 (386)
Q Consensus 13 ~~~~~~~~ 20 (386)
.|.+.||+
T Consensus 4 ~l~l~nf~ 11 (1164)
T TIGR02169 4 RIELENFK 11 (1164)
T ss_pred EEEEeCee
Confidence 35666765
No 66
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.13 E-value=40 Score=32.44 Aligned_cols=92 Identities=26% Similarity=0.383 Sum_probs=47.2
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHH---
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLER--- 353 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllek--- 353 (386)
|...+..+..+++.++..|..+...++..+..+.+|+++...+.. +.+++. -=|...+.-|+.
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~--------~~~~l~------p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE--------TRQELV------PLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH------HHHHHHHHHHHHHHh
Confidence 344444455555555555555555555555555555555555432 111111 112222233333
Q ss_pred -H----HHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q psy1888 354 -D----VHQKQDTIIELRRQLEDIKMINLEMYKK 382 (386)
Q Consensus 354 -d----~~ekqdt~~~lr~ql~~~k~in~~~~~~ 382 (386)
| ..|.++-|..||.-+++-.---.+-|+.
T Consensus 120 ~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~r~ 153 (251)
T PF11932_consen 120 LDLPFLLEERQERLARLRAMLDDADVSLAEKFRR 153 (251)
T ss_pred cCCCCChHHHHHHHHHHHHhhhccCCCHHHHHHH
Confidence 3 4678888888988887755444444443
No 67
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=80.26 E-value=47 Score=35.63 Aligned_cols=118 Identities=22% Similarity=0.296 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHH-HHHHHhhhccc---------cccchhhh
Q psy1888 267 KNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENE-NLKNQLANSSQ---------HTSNLSVH 336 (386)
Q Consensus 267 K~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~-~l~~e~~~~~~---------~~~~el~~ 336 (386)
||.++-.++.|...+++.|..+++-..++..+.-||.--|...+.|||.-- .+.+-+...++ +-|.|++.
T Consensus 385 Knd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeever 464 (527)
T PF15066_consen 385 KNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVER 464 (527)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHH
Confidence 566666667777777777777877777777777777777788888887643 33322222111 11334555
Q ss_pred hhcchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhh
Q psy1888 337 EVGLKAEMEVA----MKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQ 384 (386)
Q Consensus 337 q~~~k~e~e~a----~kllekd~~ekqdt~~~lr~ql~~~k~in~~~~~~~~ 384 (386)
--.+|-|+|-| +.+|-++-.-...-.-+|+..++..++-|++=-+||.
T Consensus 465 LQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLK 516 (527)
T PF15066_consen 465 LQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLK 516 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 55677788764 5777665333334566888888888888887766664
No 68
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.21 E-value=28 Score=41.40 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy1888 352 ERDVHQKQDTIIELRRQLEDIKMINLEMY 380 (386)
Q Consensus 352 ekd~~ekqdt~~~lr~ql~~~k~in~~~~ 380 (386)
+...++.|+.+..++..++++..+|-++-
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 933 ETSNKKAQDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666667777777776666554
No 69
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=79.98 E-value=54 Score=31.23 Aligned_cols=31 Identities=26% Similarity=0.247 Sum_probs=21.1
Q ss_pred cchhhhhhcchHHHHHHHHHHHHHHHHHHHH
Q psy1888 331 SNLSVHEVGLKAEMEVAMKLLERDVHQKQDT 361 (386)
Q Consensus 331 ~~el~~q~~~k~e~e~a~kllekd~~ekqdt 361 (386)
++.-.--++-.-|+|.|..-||++|.+.+-.
T Consensus 181 e~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 181 EQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445566778999999999988754433
No 70
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=79.85 E-value=53 Score=35.85 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhH
Q psy1888 269 YIEELNRHLNATVGNLQTQVES 290 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~ 290 (386)
-|...|..|+.++..|+.+++.
T Consensus 154 eL~~~~~~Le~e~~~l~~~v~~ 175 (546)
T PF07888_consen 154 ELLKENEQLEEEVEQLREEVER 175 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333
No 71
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=78.20 E-value=44 Score=28.98 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=23.3
Q ss_pred HHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1888 276 HLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENL 319 (386)
Q Consensus 276 ~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l 319 (386)
.+++++..|+.-++....++..+..+=..-++....|++++..+
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~ 56 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASR 56 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665555444333444555555555443
No 72
>KOG0977|consensus
Probab=77.94 E-value=59 Score=35.50 Aligned_cols=43 Identities=21% Similarity=0.465 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcC
Q psy1888 344 MEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQAL 386 (386)
Q Consensus 344 ~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in~~~~~~~~~~ 386 (386)
||-..+-|-+++.-=.+.|-..|+||++=-....+.-.++|+|
T Consensus 167 le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~L 209 (546)
T KOG0977|consen 167 LEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTL 209 (546)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444444444555555666666666666555556655555543
No 73
>KOG0976|consensus
Probab=77.32 E-value=28 Score=39.64 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMRED 301 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~ee 301 (386)
+-+|+=-.|+++|+..||-+...++.+.++|..-
T Consensus 95 ~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~t 128 (1265)
T KOG0976|consen 95 NLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDT 128 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888899999999888888887777433
No 74
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=77.25 E-value=54 Score=29.37 Aligned_cols=64 Identities=23% Similarity=0.177 Sum_probs=48.2
Q ss_pred hhHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 259 NMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQ 322 (386)
Q Consensus 259 ~~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e 322 (386)
++..+++.+-.+|--.--...++..|+..++..+.+..+..+.|..-++++..+..++......
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4777777777666444444567778999999999999998888888888888888877766543
No 75
>PRK01203 prefoldin subunit alpha; Provisional
Probab=77.05 E-value=41 Score=30.07 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy1888 346 VAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMY 380 (386)
Q Consensus 346 ~a~kllekd~~ekqdt~~~lr~ql~~~k~in~~~~ 380 (386)
-+++.|++.+.+=++.+...+++++.+..+=.+++
T Consensus 87 ~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 87 RTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999988887766665
No 76
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=76.74 E-value=24 Score=36.26 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=26.2
Q ss_pred HHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1888 275 RHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENL 319 (386)
Q Consensus 275 r~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l 319 (386)
|..-..|.+-|...+.|..+|.+++.+|-.+...+....-+.+.|
T Consensus 88 r~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~L 132 (401)
T PF06785_consen 88 RKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHL 132 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 444455666666666666666666666665555555554444443
No 77
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=76.01 E-value=26 Score=30.65 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhHhHHHHHHHhhcC
Q psy1888 362 IIELRRQLEDIKMINLEMYKKLQAL 386 (386)
Q Consensus 362 ~~~lr~ql~~~k~in~~~~~~~~~~ 386 (386)
|..+.+..+|+..=|-=++..|..+
T Consensus 107 ~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 107 LSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4467777777777787777777643
No 78
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=75.83 E-value=41 Score=36.23 Aligned_cols=105 Identities=19% Similarity=0.298 Sum_probs=52.1
Q ss_pred HHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHH---HHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHH-
Q psy1888 271 EELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEK---NLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEV- 346 (386)
Q Consensus 271 EElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~---~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~- 346 (386)
+|+-+-.+.++..+-..++.+.++|..+.|....|.. .|..|.+.-..|+ .+.-|----.-+||+-|+-
T Consensus 256 ~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~-------~D~nk~~~~~~~mk~K~~~~ 328 (622)
T COG5185 256 QELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALK-------SDSNKYENYVNAMKQKSQEW 328 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHhc
Confidence 4566666666666677777777777777666554432 2222322222222 1111100011135554443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHh------HhHHHHHHH
Q psy1888 347 --AMKLLERDVHQKQDTIIELRRQLEDIK------MINLEMYKK 382 (386)
Q Consensus 347 --a~kllekd~~ekqdt~~~lr~ql~~~k------~in~~~~~~ 382 (386)
+|+-|--.|.+|..-|.+||.|-+..+ .||.+-|++
T Consensus 329 ~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~ 372 (622)
T COG5185 329 PGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFEL 372 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHH
Confidence 555555566666666655555555544 355555543
No 79
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=75.57 E-value=42 Score=38.00 Aligned_cols=109 Identities=22% Similarity=0.254 Sum_probs=44.4
Q ss_pred HhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhh-cchHH
Q psy1888 265 DQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEV-GLKAE 343 (386)
Q Consensus 265 dQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~-~~k~e 343 (386)
.-+.++.+....++.-+.+|..+...++.....+.+.++.++....++.++...++++-.....+..+|....+ ..+.|
T Consensus 501 ~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~ 580 (771)
T TIGR01069 501 QAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKE 580 (771)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445554444444444444444444444433333333333333333333333333322222222222222111 23444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1888 344 MEVAMKLLERDVHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 344 ~e~a~kllekd~~ekqdt~~~lr~ql~~~k~ 374 (386)
.+..++-|.+. ..++......++++++++.
T Consensus 581 ~~~~i~~lk~~-~~~~~~~~~~~~~~~~~~~ 610 (771)
T TIGR01069 581 VESIIRELKEK-KIHKAKEIKSIEDLVKLKE 610 (771)
T ss_pred HHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Confidence 44444444332 1344555566666666554
No 80
>KOG0971|consensus
Probab=75.54 E-value=67 Score=37.24 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=16.8
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhH
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVES 290 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~ 290 (386)
+..+.-||--+-.-.-.+++++.+||.+||.
T Consensus 412 ~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 412 LEELRRQKERLSRELDQAESTIADLKEQVDA 442 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444556666666666664
No 81
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=75.44 E-value=78 Score=31.05 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhHHHH
Q psy1888 301 DLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIK-MINLEM 379 (386)
Q Consensus 301 el~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k-~in~~~ 379 (386)
|+..|+.++.+|-.|+..+..+....+...+-.-+.-+.+..++..+=+-+|..+....+...++.+|-+.++ .+|-++
T Consensus 97 E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~el 176 (239)
T COG1579 97 EIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPEL 176 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 3344444444444444444443332222222122222233333333334444444444444444555544443 244444
Q ss_pred HH
Q psy1888 380 YK 381 (386)
Q Consensus 380 ~~ 381 (386)
|.
T Consensus 177 l~ 178 (239)
T COG1579 177 LS 178 (239)
T ss_pred HH
Confidence 43
No 82
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=74.83 E-value=19 Score=40.47 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=12.0
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHH
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKN 308 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~ 308 (386)
+....+.++.+...|++|+..+|.+
T Consensus 67 ~~~~~~~~e~~~~~lr~e~ke~K~r 91 (717)
T PF09730_consen 67 LRKECEDLELERKRLREEIKEYKFR 91 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555444433
No 83
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=74.57 E-value=11 Score=34.26 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=24.6
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy1888 348 MKLLERD-VHQKQDTIIELRRQLEDIKMINLEMYK 381 (386)
Q Consensus 348 ~kllekd-~~ekqdt~~~lr~ql~~~k~in~~~~~ 381 (386)
|.+|-.| +.-.-|.+..|-.|++.+|.-+--||.
T Consensus 103 ~allD~d~l~l~~dg~~Gldeqi~~lkes~~yLF~ 137 (155)
T PF06810_consen 103 KALLDLDKLKLDDDGLKGLDEQIKALKESDPYLFE 137 (155)
T ss_pred HHhcCHHHeeeCCCccccHHHHHHHHHhcCchhcc
Confidence 5666554 444556788999999999887776664
No 84
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=74.50 E-value=1.1e+02 Score=32.99 Aligned_cols=119 Identities=16% Similarity=0.193 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHH----HHHHHHHHHHHHHhhhccccc--cchhhhhhc
Q psy1888 266 QKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNL----RILIQENENLKNQLANSSQHT--SNLSVHEVG 339 (386)
Q Consensus 266 QK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i----~~lq~e~~~l~~e~~~~~~~~--~~el~~q~~ 339 (386)
|....++-.+.++.++..++.+...+..++..+...++..+... ..|++-.++|+.++++...++ +|.=...-.
T Consensus 54 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~ 133 (475)
T PRK10361 54 QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQ 133 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455566666666666666666666555554333333 333333333444444311111 000000000
Q ss_pred chHHHH-------HHHHHHHHHHHHHH----HHHHHHHHHHHHHhHhHHHHHHHhh
Q psy1888 340 LKAEME-------VAMKLLERDVHQKQ----DTIIELRRQLEDIKMINLEMYKKLQ 384 (386)
Q Consensus 340 ~k~e~e-------~a~kllekd~~ekq----dt~~~lr~ql~~~k~in~~~~~~~~ 384 (386)
-++.|+ --++-.++.+.+-+ ..--+|+.|+..++..|.+|-+...
T Consensus 134 ~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~ 189 (475)
T PRK10361 134 NRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAI 189 (475)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 12333444333221 2236889999999999988876544
No 85
>KOG0977|consensus
Probab=74.21 E-value=6.2 Score=42.78 Aligned_cols=86 Identities=22% Similarity=0.296 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhccccccchhhh
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAE-----------KNLRILIQENENLKNQLANSSQHTSNLSVH 336 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~-----------~~i~~lq~e~~~l~~e~~~~~~~~~~el~~ 336 (386)
||.-|=.+.+..++..|.+|+..++..|.-+.+++.--+ ..+.+...++..+++|++....++++=+..
T Consensus 292 ~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ 371 (546)
T KOG0977|consen 292 NYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDT 371 (546)
T ss_pred HHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 344444455677888889999888888888755544222 233444455556666666555556666666
Q ss_pred hhcchHHHHHHHHHHHH
Q psy1888 337 EVGLKAEMEVAMKLLER 353 (386)
Q Consensus 337 q~~~k~e~e~a~kllek 353 (386)
++.+..|+..==||||-
T Consensus 372 ki~Ld~EI~~YRkLLeg 388 (546)
T KOG0977|consen 372 KISLDAEIAAYRKLLEG 388 (546)
T ss_pred HhHHHhHHHHHHHHhcc
Confidence 67777666655577764
No 86
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.61 E-value=30 Score=27.03 Aligned_cols=40 Identities=33% Similarity=0.403 Sum_probs=20.2
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQL 323 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~ 323 (386)
++..+.....+|-.....|..|..++.+|.+++..|+.+.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555443
No 87
>KOG2991|consensus
Probab=73.43 E-value=43 Score=33.41 Aligned_cols=78 Identities=24% Similarity=0.254 Sum_probs=49.1
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTII 363 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~ 363 (386)
|++|---|..+|..+-.+.+ .-+|.+|.-|+..-|+.+...+. -..|+.--|.-|-.|+.--|.||.
T Consensus 215 LMAKCR~L~qENeElG~q~s--~Gria~Le~eLAmQKs~seElks-----------sq~eL~dfm~eLdedVEgmqsTil 281 (330)
T KOG2991|consen 215 LMAKCRTLQQENEELGHQAS--EGRIAELEIELAMQKSQSEELKS-----------SQEELYDFMEELDEDVEGMQSTIL 281 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhh--cccHHHHHHHHHHHHhhHHHHHH-----------hHHHHHHHHHHHHHHHhcchhhHH
Confidence 66666666666665554433 34555666666655543332111 223455567778888888999999
Q ss_pred HHHHHHHHHhH
Q psy1888 364 ELRRQLEDIKM 374 (386)
Q Consensus 364 ~lr~ql~~~k~ 374 (386)
.|.|+|++.+.
T Consensus 282 iLQq~Lketr~ 292 (330)
T KOG2991|consen 282 ILQQKLKETRK 292 (330)
T ss_pred HHHHHHHHHHH
Confidence 99999987663
No 88
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=72.62 E-value=1.1e+02 Score=30.88 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=20.8
Q ss_pred CCCCccchhHHHHHHHHhhhhHHHHHHHHHhCchhHHHhcccc
Q psy1888 152 TVKTHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFET 194 (386)
Q Consensus 152 ~I~T~~GRgRAWIRlAL~eK~Ls~yL~~Ll~n~~~lL~~~Ye~ 194 (386)
.++..++-||..+|-.=. ++..+|| .++++||..
T Consensus 74 EL~~~I~egr~~~~~~E~--------et~~~nP-pLF~EY~~a 107 (312)
T smart00787 74 ELKKYISEGRDLFKEIEE--------ETLINNP-PLFKEYFSA 107 (312)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHhhcCc-HHHHHHHcC
Confidence 456666777775442211 2445888 688999953
No 89
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=72.22 E-value=10 Score=35.45 Aligned_cols=53 Identities=25% Similarity=0.269 Sum_probs=43.2
Q ss_pred HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy1888 278 NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHT 330 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~ 330 (386)
-.++.+-+.|-++|..-|+.+.++|+.|+.....|++++..+..+....+.++
T Consensus 66 l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL 118 (182)
T PF15035_consen 66 LIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDEL 118 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888899999999999999999999999999999888777666554
No 90
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=71.79 E-value=37 Score=30.89 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=34.2
Q ss_pred HHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy1888 281 VGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSS 327 (386)
Q Consensus 281 ~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~ 327 (386)
++....|+..+...++.++.+|......+..+.+++..++.+....+
T Consensus 79 L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~ 125 (177)
T PF13870_consen 79 LTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLR 125 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788888888888888888777777788887777776554433
No 91
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=71.70 E-value=93 Score=36.72 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=23.8
Q ss_pred HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 278 NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
..++..+...+..+++....+.+++..+...|..+..+.+.++.+..
T Consensus 238 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~ 284 (1163)
T COG1196 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE 284 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555544433
No 92
>KOG4196|consensus
Probab=71.63 E-value=24 Score=31.58 Aligned_cols=56 Identities=27% Similarity=0.345 Sum_probs=28.3
Q ss_pred HHHHHHHHHH----HhHHHHHHHHhHhHhh---------hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy1888 269 YIEELNRHLN----ATVGNLQTQVESLTTT---------NALMREDLSIAEKNLRILIQENENLKNQLANSS 327 (386)
Q Consensus 269 ylEElnr~l~----~~~~~l~~~~~~l~~~---------n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~ 327 (386)
-+.||||||- ..|..|++|--.|+-- .-.-|+||+..| ..|++|.+.|++|++..+
T Consensus 33 SVReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k---~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 33 SVRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEK---AELQQQVEKLKEENSRLR 101 (135)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4788999885 3333344443333210 011145555532 356666666666655433
No 93
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=71.62 E-value=22 Score=30.56 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=39.4
Q ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHH
Q psy1888 261 SLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILI 313 (386)
Q Consensus 261 ~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq 313 (386)
+.++|+-.-+|+-...+.+++..|+..+..+-++|+.++-|-+..+..+.++.
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677778888888888888888888888888888888777665444444443
No 94
>PHA02562 46 endonuclease subunit; Provisional
Probab=71.58 E-value=66 Score=34.03 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=12.8
Q ss_pred cchhHHHHHhhhHHHHHHHHHHHhHH
Q psy1888 257 EDNMSLVLDQKNYIEELNRHLNATVG 282 (386)
Q Consensus 257 ~~~~~~~ldQK~ylEElnr~l~~~~~ 282 (386)
+..+..+-||..+++.=-..++..+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555544444444444
No 95
>KOG0612|consensus
Probab=71.43 E-value=25 Score=41.53 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1888 349 KLLERDVHQKQDTIIELRRQLE 370 (386)
Q Consensus 349 kllekd~~ekqdt~~~lr~ql~ 370 (386)
+++||+..++-|++..+++|++
T Consensus 789 ~~~Ekq~~~~~~~l~~~K~~~e 810 (1317)
T KOG0612|consen 789 KMLEKQLKKLLDELAELKKQLE 810 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998
No 96
>KOG1853|consensus
Probab=71.39 E-value=1e+02 Score=30.85 Aligned_cols=107 Identities=14% Similarity=0.194 Sum_probs=60.5
Q ss_pred HHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHH-----------HHHHHHHHHHHHHHhhh----------cccccc
Q psy1888 273 LNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKN-----------LRILIQENENLKNQLAN----------SSQHTS 331 (386)
Q Consensus 273 lnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~-----------i~~lq~e~~~l~~e~~~----------~~~~~~ 331 (386)
+-.-|++|+.++.++.-.++..|+.|+-|++.-|.. +..|..++.+.+..... ...++|
T Consensus 46 ~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 46 IEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 335567888888888888888888887776654433 22333333333322221 111111
Q ss_pred ch-------hh-hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy1888 332 NL-------SV-HEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMY 380 (386)
Q Consensus 332 ~e-------l~-~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in~~~~ 380 (386)
.- || ..-.+.+-+|. .-+||-++.||+-.+++..+--|+.+.+..++.
T Consensus 126 rakRati~sleDfeqrLnqAIEr-nAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 126 RAKRATIYSLEDFEQRLNQAIER-NAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 00 00112222222 357999999999999988777777777666553
No 97
>KOG0161|consensus
Probab=71.33 E-value=84 Score=39.29 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=46.0
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHH-------HHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVG-------NLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~-------~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
+..+-+|.-..||.+-.++.+.. ++...++.++.+-.++..|...+.+.|..|++++..+.+.++
T Consensus 910 l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~ 981 (1930)
T KOG0161|consen 910 LKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENIS 981 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666677776655554444 466666666777777888888888899999999888776655
No 98
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=71.08 E-value=67 Score=30.76 Aligned_cols=45 Identities=31% Similarity=0.319 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhh
Q psy1888 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQ 384 (386)
Q Consensus 340 ~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in~~~~~~~~ 384 (386)
--.|.+.++|-||.....=-+-|..|-.||.+++.+--+.-.|+.
T Consensus 72 ~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~ 116 (237)
T PF00261_consen 72 RADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYE 116 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999998766677788899999999888777665553
No 99
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=69.72 E-value=15 Score=37.26 Aligned_cols=45 Identities=22% Similarity=0.357 Sum_probs=35.9
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
|-+++.+||.|+..+..+|..+...|.+++.+-..|+.|+..++.
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqd 283 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQD 283 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777788888888888888888888888888888888777764
No 100
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=69.39 E-value=7.7 Score=39.69 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhccccccc
Q psy1888 308 NLRILIQENENLKNQLANSSQHTSN 332 (386)
Q Consensus 308 ~i~~lq~e~~~l~~e~~~~~~~~~~ 332 (386)
....||+||+.||+||+..+.++++
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVer 57 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVER 57 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHH
Confidence 4456777777777777766665554
No 101
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=69.39 E-value=82 Score=35.39 Aligned_cols=58 Identities=24% Similarity=0.348 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Q psy1888 267 KNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLS-------IAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 267 K~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~-------~a~~~i~~lq~e~~~l~~e~~ 324 (386)
...+|.....|..+|.+--..++.+..+|..+|.+.+ .-...|..|+.|+..+++...
T Consensus 589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~e 653 (786)
T PF05483_consen 589 MKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHE 653 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444555556666676666666777777777766654 334567778888887776544
No 102
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=69.24 E-value=2.5 Score=32.80 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchh
Q psy1888 299 REDLSIAEKNLRILIQENENLKNQLANSSQHTSNLS 334 (386)
Q Consensus 299 ~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el 334 (386)
.||++.-|+.|.+|++.+.+|+.||+..+.....|.
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe~ 48 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQNASPEQ 48 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 577888888999999999999998887666555443
No 103
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=69.17 E-value=1.3e+02 Score=32.40 Aligned_cols=34 Identities=32% Similarity=0.366 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1888 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 340 ~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~ 374 (386)
|+.++ .+.+-||.++...-+-+..|+.+|...+.
T Consensus 230 L~~e~-~~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 230 LKEEL-EAAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343 34455555555555555555555555554
No 104
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=69.00 E-value=36 Score=32.04 Aligned_cols=52 Identities=23% Similarity=0.376 Sum_probs=39.0
Q ss_pred HHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 274 NRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 274 nr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
++.++..+.+|..+|-.++.+...++++.+++...|..++.+...++++..+
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888888877777777777777777777765543
No 105
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=68.68 E-value=95 Score=28.51 Aligned_cols=55 Identities=11% Similarity=0.231 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHH-HHHHHHHh
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQE-NENLKNQL 323 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e-~~~l~~e~ 323 (386)
.++++.....+.+..-...-+++++..+...++|+.|+....++.+| ...+..|.
T Consensus 38 iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~ 93 (155)
T PRK06569 38 IFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEF 93 (155)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444444444444555566555555555555 44444433
No 106
>PRK04863 mukB cell division protein MukB; Provisional
Probab=68.56 E-value=69 Score=39.03 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 64 IERRNLVNISKLIVKELIETSQK 86 (386)
Q Consensus 64 ieR~NLl~~lK~sVK~LiE~~~~ 86 (386)
-.|++.+..+....-.+.+.+.+
T Consensus 782 ~are~~~~~l~~~~~~~~~~~~~ 804 (1486)
T PRK04863 782 AAREKRIEQLRAEREELAERYAT 804 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888887777766666643
No 107
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=68.44 E-value=32 Score=31.85 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=18.4
Q ss_pred hHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 289 ESLTTTNALMREDLSIAEKNLRILIQENENLKNQL 323 (386)
Q Consensus 289 ~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~ 323 (386)
..+..+|..+++|++.....+..|+.|++.|+++.
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555443
No 108
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=68.17 E-value=94 Score=33.73 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 348 MKLLERDVHQKQDTIIELRRQLEDIK 373 (386)
Q Consensus 348 ~kllekd~~ekqdt~~~lr~ql~~~k 373 (386)
+.-|.++..+=.+.+..++..|.++|
T Consensus 406 l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 406 LQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 109
>KOG1029|consensus
Probab=68.17 E-value=33 Score=38.97 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=20.4
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
-++|+.++..+..+.+|..-.-|.....|+.|+.-|..
T Consensus 414 Erar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~ 451 (1118)
T KOG1029|consen 414 ERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNF 451 (1118)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555545555555555555443
No 110
>KOG0946|consensus
Probab=68.14 E-value=94 Score=35.63 Aligned_cols=58 Identities=26% Similarity=0.241 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSS 327 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~ 327 (386)
+-++-|.+..+..+++++...++-+|+.+.+++..-...+..+.++++-||.+++..+
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4456677888999999999999999999999998877888899999999999988533
No 111
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=67.91 E-value=1.2e+02 Score=31.29 Aligned_cols=80 Identities=26% Similarity=0.263 Sum_probs=47.0
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHH--H
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAM--K 349 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~--k 349 (386)
|+.-+.-..+..|+++...|.++|.+++++.. .++.+++ .-|..|.++|.++ |
T Consensus 130 el~d~~l~~~~~l~~~~~~L~~enerL~~e~~-------~~~~qlE------------------~~v~~K~~~E~~L~~K 184 (342)
T PF06632_consen 130 ELFDWCLDANSRLQAENEHLQKENERLESEAN-------KLLKQLE------------------KFVNAKEEHEEDLYAK 184 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH------------------HHHHHHHHHHHHHHHH
Confidence 44445556677777777777777777755533 3333333 3445677777653 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q psy1888 350 LLERDVHQKQDTIIELRRQLEDIKMINL 377 (386)
Q Consensus 350 llekd~~ekqdt~~~lr~ql~~~k~in~ 377 (386)
.+ -=+-||-=-|..|+++|...+..+-
T Consensus 185 F~-~vLNeKK~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 185 FV-LVLNEKKAKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHhHHHHHHHHHHHHHHhhcccc
Confidence 11 0134455557788888887776443
No 112
>KOG3647|consensus
Probab=67.88 E-value=63 Score=32.47 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh---cc-------ccccchhhhhhc
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN---SS-------QHTSNLSVHEVG 339 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~---~~-------~~~~~el~~q~~ 339 (386)
+-|.-+.|.+++.+.+.+++++...-..-+.+.++....|..-+.|+++.++-+.. .| ++.|+||.
T Consensus 103 l~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLq---- 178 (338)
T KOG3647|consen 103 LLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQ---- 178 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH----
Confidence 33555777777777777777766555555556565555666666666666554442 11 12222222
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q psy1888 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMIN 376 (386)
Q Consensus 340 ~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in 376 (386)
|+-+. --.|--.+..|++||+|.-..-
T Consensus 179 ---------kly~~-Y~l~f~nl~yL~~qldd~~rse 205 (338)
T KOG3647|consen 179 ---------KLYQR-YFLRFHNLDYLKSQLDDRTRSE 205 (338)
T ss_pred ---------HHHHH-HHHHHhhHHHHHHHHHHHhhhh
Confidence 12111 2455667788899998875533
No 113
>PRK03918 chromosome segregation protein; Provisional
Probab=67.84 E-value=1.5e+02 Score=33.33 Aligned_cols=8 Identities=38% Similarity=0.671 Sum_probs=4.9
Q ss_pred ceecccce
Q psy1888 13 TIYLCNFR 20 (386)
Q Consensus 13 ~~~~~~~~ 20 (386)
.|.+.||+
T Consensus 5 ~l~i~nf~ 12 (880)
T PRK03918 5 ELKIKNFR 12 (880)
T ss_pred EEEEeCcc
Confidence 45666765
No 114
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=67.76 E-value=93 Score=29.93 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=22.5
Q ss_pred HHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 282 GNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 282 ~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
...|.+++.+..+...+..++...+..+..|+..+.++.
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~ 76 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLE 76 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777766666665554445544544444443
No 115
>KOG0239|consensus
Probab=67.71 E-value=67 Score=35.90 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q psy1888 306 EKNLRILIQENENLKNQLANS 326 (386)
Q Consensus 306 ~~~i~~lq~e~~~l~~e~~~~ 326 (386)
+..|..||+++..++.+....
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l 260 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKEL 260 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334666666666666554443
No 116
>KOG0250|consensus
Probab=67.40 E-value=96 Score=36.44 Aligned_cols=98 Identities=18% Similarity=0.299 Sum_probs=50.9
Q ss_pred HHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhc----ccc--ccchhhhhh-----------
Q psy1888 276 HLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANS----SQH--TSNLSVHEV----------- 338 (386)
Q Consensus 276 ~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~----~~~--~~~el~~q~----------- 338 (386)
-+...+++-+++++++..+-.-.++|++.|+..+..+..+...++.+...+ +.. --..++.||
T Consensus 313 ~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~ 392 (1074)
T KOG0250|consen 313 EARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNEL 392 (1074)
T ss_pred HHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334445555666666666555666666666666666666666665554421 100 000122222
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 339 -GLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIK 373 (386)
Q Consensus 339 -~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k 373 (386)
+-..|+|--.+.|++++..=+--+.+||+-+++++
T Consensus 393 ~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 393 GSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666665555555566666655554
No 117
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=67.12 E-value=87 Score=35.55 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhH
Q psy1888 340 LKAEMEVAMKLLERD-----VHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 340 ~k~e~e~a~kllekd-----~~ekqdt~~~lr~ql~~~k~ 374 (386)
.|.|.+..++-|.+- -..++..+...|+++...+.
T Consensus 582 a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~ 621 (782)
T PRK00409 582 AKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANE 621 (782)
T ss_pred HHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhh
Confidence 445555555555431 11344445555666655543
No 118
>KOG0963|consensus
Probab=66.99 E-value=82 Score=34.87 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q psy1888 343 EMEVAMKLLERD 354 (386)
Q Consensus 343 e~e~a~kllekd 354 (386)
|+.+.|.=||.+
T Consensus 236 ev~lim~eLe~a 247 (629)
T KOG0963|consen 236 EVSLIMTELEDA 247 (629)
T ss_pred HHHHHHHHHHHH
Confidence 455566666554
No 119
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=66.82 E-value=1e+02 Score=31.06 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=44.1
Q ss_pred HHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccccccc
Q psy1888 276 HLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN---SSQHTSN 332 (386)
Q Consensus 276 ~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~---~~~~~~~ 332 (386)
.|...-..-|-++|+++.+-.+-|...+..++.+..|+.||+.|.+.+.+ .|+++.-
T Consensus 29 kLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlsh 88 (307)
T PF10481_consen 29 KLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSH 88 (307)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhH
Confidence 33333344677899999999999999999999999999999999987775 4455443
No 120
>KOG0250|consensus
Probab=66.75 E-value=1e+02 Score=36.23 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQH 329 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~ 329 (386)
-.+|..++.+..+..++.+++.....+..+...+..-...|-++..|-+...+|...++++
T Consensus 285 ~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~ 345 (1074)
T KOG0250|consen 285 NQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKD 345 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3333344444444444444444444444333222222234444444444444444444444
No 121
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=66.66 E-value=15 Score=34.16 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=8.5
Q ss_pred HHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 285 QTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 285 ~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
+.++-.+...+..+..++..-...|..|+.++..++.
T Consensus 94 ~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~ 130 (194)
T PF08614_consen 94 AQQLVELNDELQELEKELSEKERRLAELEAELAQLEE 130 (194)
T ss_dssp --------------------HHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444455555555555443
No 122
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=66.61 E-value=66 Score=25.78 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=21.8
Q ss_pred HHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 281 VGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQL 323 (386)
Q Consensus 281 ~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~ 323 (386)
+..|.+||..+=.+.+.++.|++.-+....+|.+++..|+.||
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en 48 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEEN 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445666666665655555555544444444444444444443
No 123
>KOG4674|consensus
Probab=66.42 E-value=1.1e+02 Score=38.06 Aligned_cols=119 Identities=14% Similarity=0.139 Sum_probs=74.1
Q ss_pred cchhHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---ccch
Q psy1888 257 EDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQH---TSNL 333 (386)
Q Consensus 257 ~~~~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~---~~~e 333 (386)
..+++.++-++-|+.+=+.++...+..++-.+.+.-+.-....-+|..++-.+.-.+..+..+-.+...+.++ ++++
T Consensus 383 ~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~ 462 (1822)
T KOG4674|consen 383 GSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKE 462 (1822)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3368888888888888888888888777777766665544433333333333333333333333333333322 2333
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy1888 334 SVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMI 375 (386)
Q Consensus 334 l~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~i 375 (386)
++-=..-..-.+.-.|.|+.++.+.++.+..|+.++++++..
T Consensus 463 ~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~ 504 (1822)
T KOG4674|consen 463 LESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKG 504 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 332222223345567999999999999999999999998865
No 124
>PRK02224 chromosome segregation protein; Provisional
Probab=66.24 E-value=1.3e+02 Score=34.03 Aligned_cols=11 Identities=9% Similarity=0.223 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q psy1888 65 ERRNLVNISKL 75 (386)
Q Consensus 65 eR~NLl~~lK~ 75 (386)
-+++|+.-+.+
T Consensus 35 GKStil~ai~~ 45 (880)
T PRK02224 35 GKSSLLEACFF 45 (880)
T ss_pred CHHHHHHHHHH
Confidence 34566554443
No 125
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=65.81 E-value=69 Score=35.47 Aligned_cols=29 Identities=10% Similarity=0.332 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy1888 347 AMKLLERDVHQKQDTIIELRRQLEDIKMI 375 (386)
Q Consensus 347 a~kllekd~~ekqdt~~~lr~ql~~~k~i 375 (386)
+..+.-++..+.|..|.++++|-+..++.
T Consensus 280 ~~E~~~~ELq~~qe~Lea~~qqNqqL~~q 308 (617)
T PF15070_consen 280 QLEMAHQELQEAQEHLEALSQQNQQLQAQ 308 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34555678888999999999998888864
No 126
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=65.68 E-value=27 Score=30.08 Aligned_cols=35 Identities=14% Similarity=0.334 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
|+--....|..++..++.++..+..++.+++..+.
T Consensus 70 YLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~ 104 (118)
T PF13815_consen 70 YLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLK 104 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555544444
No 127
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=65.58 E-value=93 Score=27.16 Aligned_cols=83 Identities=23% Similarity=0.361 Sum_probs=49.0
Q ss_pred ccchhHHHHHhhhH-HHHHHHHHHHhHHH----HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy1888 256 VEDNMSLVLDQKNY-IEELNRHLNATVGN----LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHT 330 (386)
Q Consensus 256 ~~~~~~~~ldQK~y-lEElnr~l~~~~~~----l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~ 330 (386)
++..+...+.+-+| ++|+.+++..+|.. |-.+.... .+++.-+..+++..
T Consensus 27 ~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~------------------~~~~~~l~~v~~~v------- 81 (132)
T PF10392_consen 27 SELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSI------------------EELESVLQAVRSSV------- 81 (132)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhH------------------HHHHHHHHHHHHHH-------
Confidence 34456666777666 67888888888865 32222222 22222222332211
Q ss_pred cchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1888 331 SNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 331 ~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~ 374 (386)
.-+..+++-|.++|.+..+.+..++.+|+.+-.
T Consensus 82 -----------~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~ 114 (132)
T PF10392_consen 82 -----------ESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQ 114 (132)
T ss_pred -----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 113335677778888888888888888877644
No 128
>PRK09343 prefoldin subunit beta; Provisional
Probab=65.48 E-value=92 Score=27.04 Aligned_cols=29 Identities=17% Similarity=0.470 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 344 MEVAMKLLERDVHQKQDTIIELRRQLEDI 372 (386)
Q Consensus 344 ~e~a~kllekd~~ekqdt~~~lr~ql~~~ 372 (386)
++..++-|||.....+.++..++++|.++
T Consensus 83 ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 83 LELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888888888888888888887764
No 129
>KOG0804|consensus
Probab=65.32 E-value=72 Score=34.11 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy1888 347 AMKLLERDVHQKQDTIIELRRQLEDIKMI 375 (386)
Q Consensus 347 a~kllekd~~ekqdt~~~lr~ql~~~k~i 375 (386)
|.+-.++.|.+=|.-+.-|-=+||--+.|
T Consensus 429 ~~~s~d~~I~dLqEQlrDlmf~le~qqkl 457 (493)
T KOG0804|consen 429 ALGSKDEKITDLQEQLRDLMFFLEAQQKL 457 (493)
T ss_pred HHHHHHHHHHHHHHHHHhHheehhhhhhh
Confidence 44444444444444444444444444433
No 130
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=65.25 E-value=1.3e+02 Score=28.70 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy1888 352 ERDVHQKQDTIIELRRQLEDIKMINLEMY 380 (386)
Q Consensus 352 ekd~~ekqdt~~~lr~ql~~~k~in~~~~ 380 (386)
++-+.|+---|..|-+.+++..+|+-++-
T Consensus 150 da~l~e~t~~i~eL~~~ieEy~~~teeLR 178 (193)
T PF14662_consen 150 DAILSERTQQIEELKKTIEEYRSITEELR 178 (193)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33344555555566666666666665543
No 131
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=65.21 E-value=1.3e+02 Score=35.66 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 347 AMKLLERDVHQKQDTIIELRRQLEDI 372 (386)
Q Consensus 347 a~kllekd~~ekqdt~~~lr~ql~~~ 372 (386)
+.+-+|+++.+.++.+-.+++++.+.
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (1163)
T COG1196 461 RLKELERELAELQEELQRLEKELSSL 486 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 132
>KOG4674|consensus
Probab=65.17 E-value=75 Score=39.32 Aligned_cols=101 Identities=21% Similarity=0.221 Sum_probs=52.3
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQK 358 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ek 358 (386)
+.|.++...+..+.+.|.-++.+...-...|.++..++-.++.....+..+.++|+..|..|-...+-...=++.++.+-
T Consensus 224 ~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el 303 (1822)
T KOG4674|consen 224 EKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAEL 303 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333332222334456777777777666666666666777777
Q ss_pred HHHHHHHHHHHHHHhHhHHHH
Q psy1888 359 QDTIIELRRQLEDIKMINLEM 379 (386)
Q Consensus 359 qdt~~~lr~ql~~~k~in~~~ 379 (386)
++.|..+..-|+|+..-|-+.
T Consensus 304 ~~~i~~~~klled~~~~~~e~ 324 (1822)
T KOG4674|consen 304 QRAIEELEKLLEDASERNKEN 324 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 777777777777766555443
No 133
>PF15294 Leu_zip: Leucine zipper
Probab=65.01 E-value=72 Score=31.99 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=23.6
Q ss_pred hhhhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 334 SVHEV-GLKAEMEVAMKLLERDVHQKQDTIIELRRQL 369 (386)
Q Consensus 334 l~~q~-~~k~e~e~a~kllekd~~ekqdt~~~lr~ql 369 (386)
||.+| .+|.|++-++.-+++....-.+++.+-..+|
T Consensus 195 LE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~Khel 231 (278)
T PF15294_consen 195 LENKMAALKSELEKALQDKESQQKALEETLQSCKHEL 231 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45454 6788888888877776666666666544333
No 134
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=64.46 E-value=72 Score=32.17 Aligned_cols=43 Identities=33% Similarity=0.395 Sum_probs=28.0
Q ss_pred ccchhHHHHHhhhHHHHHHHHHHHhHHHHHHH-------HhHhHhhhHHhHHH
Q psy1888 256 VEDNMSLVLDQKNYIEELNRHLNATVGNLQTQ-------VESLTTTNALMRED 301 (386)
Q Consensus 256 ~~~~~~~~ldQK~ylEElnr~l~~~~~~l~~~-------~~~l~~~n~~~~ee 301 (386)
.|+++-.=|.|| |=-.|||.+.|++-+.+ |++|..+-..|.|+
T Consensus 55 ~PEQYLTPLQQK---EV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 55 NPEQYLTPLQQK---EVCIRHLKAKLKESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred CHHHhcChHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 466777778998 45679998888775544 44555555555443
No 135
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=64.30 E-value=1.6e+02 Score=29.49 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=24.8
Q ss_pred HHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1888 274 NRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENL 319 (386)
Q Consensus 274 nr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l 319 (386)
...+.+++..++.+++.++.+-..++.+++.++..+..++++....
T Consensus 139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~ 184 (423)
T TIGR01843 139 KSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEAR 184 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555544443
No 136
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=63.73 E-value=1.2e+02 Score=34.22 Aligned_cols=117 Identities=25% Similarity=0.324 Sum_probs=70.2
Q ss_pred HHHHHhhhHHHHHHHHHHHhHHH----HHHHHhHhHhh----------------------------hHHhHHHHHHHHHH
Q psy1888 261 SLVLDQKNYIEELNRHLNATVGN----LQTQVESLTTT----------------------------NALMREDLSIAEKN 308 (386)
Q Consensus 261 ~~~ldQK~ylEElnr~l~~~~~~----l~~~~~~l~~~----------------------------n~~~~eel~~a~~~ 308 (386)
..++.|---+||.+.++...+.. ++.+.++++.- -..++.+++.....
T Consensus 530 e~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ 609 (786)
T PF05483_consen 530 EKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKN 609 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34466767788888888776665 33333333321 12345667777788
Q ss_pred HHHHHHHHHHHHHHhhhccccccchhhhhh-cchHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy1888 309 LRILIQENENLKNQLANSSQHTSNLSVHEV-GLKAEMEV-------AMKLLERDVHQKQDTIIELRRQLEDIKMINLE 378 (386)
Q Consensus 309 i~~lq~e~~~l~~e~~~~~~~~~~el~~q~-~~k~e~e~-------a~kllekd~~ekqdt~~~lr~ql~~~k~in~~ 378 (386)
|.+||+||..|+.+.+.....+ ..++..| .++.||+. ...-+-|||++|-=.-..|....+..|.+-.+
T Consensus 610 ieeLqqeNk~LKKk~~aE~kq~-~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~E 686 (786)
T PF05483_consen 610 IEELQQENKALKKKITAESKQS-NVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADE 686 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 8999999999998776432221 1122222 13333333 34556677777776667777777777665544
No 137
>KOG4360|consensus
Probab=63.55 E-value=55 Score=35.50 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=53.0
Q ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 261 SLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 261 ~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
....++-+-.-|=|-+|.+++.++|.|+-.+.-++..+.+-|.+++++-..++.|.+.+...+.
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyA 285 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYA 285 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3344555566666778889999999999999999999999999999999999999988876554
No 138
>KOG1003|consensus
Probab=63.54 E-value=66 Score=30.80 Aligned_cols=72 Identities=25% Similarity=0.331 Sum_probs=45.5
Q ss_pred HhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 288 VESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRR 367 (386)
Q Consensus 288 ~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ 367 (386)
+.++...-..++++|..|.-+...+++.+...-+ --.|-+.+||.||.-...=.+-+..+..
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~Eaeq------------------~~dE~er~~Kv~enr~~kdEE~~e~~e~ 67 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLEEAEQ------------------AADESERGMKVIENRAQKLEEKMEAQEA 67 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444444555667777777777777776655442 2345566777777664444445667777
Q ss_pred HHHHHhHhHH
Q psy1888 368 QLEDIKMINL 377 (386)
Q Consensus 368 ql~~~k~in~ 377 (386)
||.+-|.|--
T Consensus 68 qLkEAk~iaE 77 (205)
T KOG1003|consen 68 QLKEAKHIAE 77 (205)
T ss_pred HHHHHHHHHH
Confidence 8888877644
No 139
>PHA02562 46 endonuclease subunit; Provisional
Probab=63.15 E-value=1.7e+02 Score=30.90 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=4.7
Q ss_pred HHHhHHHHHHHHh
Q psy1888 277 LNATVGNLQTQVE 289 (386)
Q Consensus 277 l~~~~~~l~~~~~ 289 (386)
+++++..+..+++
T Consensus 311 l~~~l~~l~~~i~ 323 (562)
T PHA02562 311 LQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 140
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=63.12 E-value=1.5e+02 Score=32.00 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=33.6
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
..+..|...++........+++....+...|..|..++..++.++..
T Consensus 309 ~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 309 ASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 44445666666666666666666677778888899999988888865
No 141
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=62.42 E-value=1.5e+02 Score=30.81 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=20.9
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
||+||-.+.+.|.-++.- ..++.+-|.|.++|+.+++
T Consensus 73 lq~kirk~~e~~eglr~i----~es~~e~q~e~~qL~~qnq 109 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRKI----RESVEERQQESEQLQSQNQ 109 (401)
T ss_pred HHHHHHHHHhccHHHHHH----HHHHHHHHHHHHHHHHhHH
Confidence 788888887777666433 2244444555555544433
No 142
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=62.36 E-value=2.3e+02 Score=30.58 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhh----hcchHHHHH-HHHHHHHH
Q psy1888 297 LMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHE----VGLKAEMEV-AMKLLERD 354 (386)
Q Consensus 297 ~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q----~~~k~e~e~-a~kllekd 354 (386)
.+.+++.........++.++..++..+...+...+..++.- -.|+.+.+. |=+.||..
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k 126 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHS 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555444444433333222222222 234455444 55667663
No 143
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=61.94 E-value=1.8e+02 Score=31.51 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHH
Q psy1888 356 HQKQDTIIELRRQLEDIKMINLEMY 380 (386)
Q Consensus 356 ~ekqdt~~~lr~ql~~~k~in~~~~ 380 (386)
.+-++.|..|.++|+. ..||++--
T Consensus 451 ~~~~~~i~~l~~~L~~-g~VNm~ai 474 (569)
T PRK04778 451 FEVSDEIEALAEELEE-KPINMEAV 474 (569)
T ss_pred HHHHHHHHHHHHHhcc-CCCCHHHH
Confidence 3445666666677766 66666443
No 144
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=61.80 E-value=48 Score=30.77 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=22.6
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQL 323 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~ 323 (386)
....+..|+..+..++.....+.+++..-+..+..++.|+..|.-++
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445555544445555555555544333
No 145
>PRK03918 chromosome segregation protein; Provisional
Probab=60.65 E-value=2.4e+02 Score=31.70 Aligned_cols=8 Identities=0% Similarity=0.264 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q psy1888 66 RRNLVNIS 73 (386)
Q Consensus 66 R~NLl~~l 73 (386)
+++++.-+
T Consensus 36 KStil~ai 43 (880)
T PRK03918 36 KSSILEAI 43 (880)
T ss_pred HHHHHHHH
Confidence 45555433
No 146
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=60.61 E-value=1.3e+02 Score=27.16 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=53.0
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSS 327 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~ 327 (386)
++.+=..++-++..+-.|++.+...|...+.+...+..-+.++...+..|..+..++.++..++...|
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667788888888888888888888888888888888877777777787777777777776544
No 147
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=60.15 E-value=16 Score=39.42 Aligned_cols=41 Identities=32% Similarity=0.302 Sum_probs=37.5
Q ss_pred HHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 281 VGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 281 ~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
+.+++.+++.+...|.+|.+-|..|+..|..|++|+++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45789999999999999999999999999999999998853
No 148
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=59.66 E-value=2.2e+02 Score=33.84 Aligned_cols=59 Identities=25% Similarity=0.370 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 266 QKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 266 QK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
|.+=.++....++.+++..+.+++.+...-+...-++..++..+..++.+...++.+..
T Consensus 615 ~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 615 QLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33334444455566666666666666666666666666666666677766666666555
No 149
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=59.31 E-value=1.1e+02 Score=32.17 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1888 349 KLLERDVHQKQDTIIELRRQLE 370 (386)
Q Consensus 349 kllekd~~ekqdt~~~lr~ql~ 370 (386)
..|+|+..+|.-.+..|+-|++
T Consensus 359 d~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 359 DSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888899988888888885
No 150
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=58.69 E-value=79 Score=32.07 Aligned_cols=85 Identities=25% Similarity=0.280 Sum_probs=46.7
Q ss_pred HhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccccccchhhhhhcchHHHHHH-----------H---HH
Q psy1888 288 VESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN---SSQHTSNLSVHEVGLKAEMEVA-----------M---KL 350 (386)
Q Consensus 288 ~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~---~~~~~~~el~~q~~~k~e~e~a-----------~---kl 350 (386)
+..+...|..+..+|.-|...+..|..|++..+..+.. .-+.+..+|..--.-..|||-. | .-
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes 218 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQES 218 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34456666777777777777777777777776653331 1122222222211222233322 1 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1888 351 LERDVHQKQDTIIELRRQLEDI 372 (386)
Q Consensus 351 lekd~~ekqdt~~~lr~ql~~~ 372 (386)
+|.-+++=|--.-=|||||+|.
T Consensus 219 ~eERL~QlqsEN~LLrQQLddA 240 (305)
T PF14915_consen 219 LEERLSQLQSENMLLRQQLDDA 240 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666799999986
No 151
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=58.58 E-value=1.2e+02 Score=26.35 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHhHHH-------HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 266 QKNYIEELNRHLNATVGN-------LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQ 322 (386)
Q Consensus 266 QK~ylEElnr~l~~~~~~-------l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e 322 (386)
+++-++..++.|+.-+.+ |..+-|.|+.++..+..+-+....+|.+||.+...++..
T Consensus 10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455444444433333 666667777777777777777788888888887777654
No 152
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=58.47 E-value=1.7e+02 Score=27.69 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=8.6
Q ss_pred HHHHHhhhHHHHHHH
Q psy1888 261 SLVLDQKNYIEELNR 275 (386)
Q Consensus 261 ~~~ldQK~ylEElnr 275 (386)
.+.-+=|||.-..-+
T Consensus 9 ~af~~iK~YYndIT~ 23 (201)
T PF13851_consen 9 KAFQEIKNYYNDITL 23 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555677665543
No 153
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=58.44 E-value=1.7e+02 Score=27.97 Aligned_cols=98 Identities=22% Similarity=0.402 Sum_probs=54.3
Q ss_pred cchhHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccccccc-
Q psy1888 257 EDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN---SSQHTSN- 332 (386)
Q Consensus 257 ~~~~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~---~~~~~~~- 332 (386)
.+.+.+++++=+-+.|.||.+...+.+ |..|...| ..||++|+.|+.-+.- -|++-.|
T Consensus 30 ~ek~~~m~~~g~lm~evNrrlQ~hl~E----IR~LKe~N--------------qkLqedNqELRdLCCFLDddRqKgrkl 91 (195)
T PF10226_consen 30 AEKMSLMVEHGRLMKEVNRRLQQHLNE----IRGLKEVN--------------QKLQEDNQELRDLCCFLDDDRQKGRKL 91 (195)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHH--------------HHHHHHHHHHHHHHcccchhHHHhHHH
Confidence 445888888888899999888877754 33333333 3456777777766652 3343333
Q ss_pred hhhhhh-------cchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q psy1888 333 LSVHEV-------GLKAEMEVAM-KLLERDVHQKQDTIIELRRQLEDIKMINL 377 (386)
Q Consensus 333 el~~q~-------~~k~e~e~a~-kllekd~~ekqdt~~~lr~ql~~~k~in~ 377 (386)
.=|+|. -|++|...=. || +++..||+.++ +--.++|.|.+
T Consensus 92 arEWQrFGryta~vmr~eV~~Y~~KL--~eLE~kq~~L~---rEN~eLKElcl 139 (195)
T PF10226_consen 92 AREWQRFGRYTASVMRQEVAQYQQKL--KELEDKQEELI---RENLELKELCL 139 (195)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HhHHHHHHHHH
Confidence 112332 4666654322 22 23445665543 34444555554
No 154
>KOG0288|consensus
Probab=58.40 E-value=1.8e+02 Score=30.99 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=35.3
Q ss_pred HHHHHHHH---HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 270 IEELNRHL---NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 270 lEElnr~l---~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
++.+|+.+ +.+.+.+-++..-+..+..-.+..+....+.+..||+|+.++.+|.-.
T Consensus 15 ~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 15 LIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 344555666666666665555666666667778888888888877654
No 155
>KOG4673|consensus
Probab=58.23 E-value=75 Score=35.82 Aligned_cols=90 Identities=22% Similarity=0.299 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHH
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMK 349 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~k 349 (386)
+|-|-|+++..++-||.+|.++++...-|-+||.--.+...+|.++...+ .+++++|+ .+.+-...+++
T Consensus 857 ~eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~--------p~~~~~le---dL~qRy~a~Lq 925 (961)
T KOG4673|consen 857 YEALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRV--------PGIKAELE---DLRQRYAAALQ 925 (961)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHH---HHHHHHHHHHH
Confidence 45566668899999999999999999988888764444333333332221 12233333 13333444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1888 350 LLERDVHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 350 llekd~~ekqdt~~~lr~ql~~~k~ 374 (386)
|. -||-.-+..||--|.|+|.
T Consensus 926 my----GEk~Ee~EELrlDl~dlK~ 946 (961)
T KOG4673|consen 926 MY----GEKDEELEELRLDLVDLKE 946 (961)
T ss_pred Hh----cchHHHHHHHHhhHHHHHH
Confidence 54 4556667889999999995
No 156
>KOG3650|consensus
Probab=58.10 E-value=26 Score=30.14 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=27.2
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHH
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRIL 312 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~l 312 (386)
|..++.+|-+|+|+.+++|-+++.|-......|..|
T Consensus 68 LQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 68 LQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 678899999999999999999877755444444333
No 157
>KOG0288|consensus
Probab=57.77 E-value=80 Score=33.46 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=15.3
Q ss_pred HHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHH
Q psy1888 264 LDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMRED 301 (386)
Q Consensus 264 ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~ee 301 (386)
..|+.-++---+-+-+.+......+..|+++|..+.+|
T Consensus 33 ~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 33 SAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444444433
No 158
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=57.75 E-value=40 Score=34.47 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=17.8
Q ss_pred HhhhhHHHHHHHHHhCchhHHHhcccccCc
Q psy1888 168 LMQKKLADYLQVLVDHRDDILVEYFETDAL 197 (386)
Q Consensus 168 L~eK~Ls~yL~~Ll~n~~~lL~~~Ye~~Al 197 (386)
|++-..++-+-.+++.+ --+++||+.--|
T Consensus 80 l~eYi~S~~ml~~ldkk-iklr~~Ye~~g~ 108 (372)
T COG3524 80 LQEYIRSRSMLDILDKK-IKLRDFYETKGF 108 (372)
T ss_pred HHHHHHhHHHHHHHHhc-ccHHHHHHhccc
Confidence 44555555555566665 467888887543
No 159
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=57.62 E-value=76 Score=26.73 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=12.8
Q ss_pred HHHHHHHHhHhHhhhHHh---HHHHHHHHHHHHHH
Q psy1888 281 VGNLQTQVESLTTTNALM---REDLSIAEKNLRIL 312 (386)
Q Consensus 281 ~~~l~~~~~~l~~~n~~~---~eel~~a~~~i~~l 312 (386)
...++.+++.+..+...+ ..++..+++.|..+
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00890 8 LQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444443333 33333434444444
No 160
>PRK04863 mukB cell division protein MukB; Provisional
Probab=57.60 E-value=2.1e+02 Score=35.06 Aligned_cols=27 Identities=7% Similarity=0.171 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhCchhHHHhcccccCccCCcc
Q psy1888 171 KKLADYLQVLVDHRDDILVEYFETDALLMSDE 202 (386)
Q Consensus 171 K~Ls~yL~~Ll~n~~~lL~~~Ye~~AlL~d~E 202 (386)
..+.+.|+.++.-+ .-|-..++|+.++
T Consensus 253 q~drdlFk~lI~~~-----~~~~aad~~r~~e 279 (1486)
T PRK04863 253 QSDRDLFKHLITES-----TNYVAADYMRHAN 279 (1486)
T ss_pred ccHHHHHHHHhhhh-----hhhhHHHHhhCHH
Confidence 56677777777654 4455566688886
No 161
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=57.23 E-value=1.1e+02 Score=33.49 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=9.1
Q ss_pred ceecccceeeecCc
Q psy1888 13 TIYLCNFRVSVDGE 26 (386)
Q Consensus 13 ~~~~~~~~~~~~g~ 26 (386)
.|-+|||+. |.|.
T Consensus 5 ~l~l~nf~~-~~~~ 17 (650)
T TIGR03185 5 QLTLENFGP-YRGR 17 (650)
T ss_pred EEEEeceEE-EcCC
Confidence 578999986 4444
No 162
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=57.14 E-value=2e+02 Score=30.76 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=36.8
Q ss_pred hhhcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhc
Q psy1888 336 HEVGLKAEMEVAM-KLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQA 385 (386)
Q Consensus 336 ~q~~~k~e~e~a~-kllekd~~ekqdt~~~lr~ql~~~k~in~~~~~~~~~ 385 (386)
.-.+|.++..-++ +.++.-+|+.-...-++-.+++..-+++..|-+.+..
T Consensus 132 ~Ll~~~~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~ 182 (448)
T COG1322 132 QLLKPLREVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGN 182 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777666 7788878888777778888888888888777765543
No 163
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=56.93 E-value=1.8e+02 Score=32.04 Aligned_cols=11 Identities=36% Similarity=0.585 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q psy1888 361 TIIELRRQLED 371 (386)
Q Consensus 361 t~~~lr~ql~~ 371 (386)
++..++.++..
T Consensus 491 ~l~~~~~~l~~ 501 (650)
T TIGR03185 491 TLKEFREKLLE 501 (650)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 164
>KOG1962|consensus
Probab=56.60 E-value=39 Score=32.65 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=5.5
Q ss_pred hHhhhHHhHHHHH
Q psy1888 291 LTTTNALMREDLS 303 (386)
Q Consensus 291 l~~~n~~~~eel~ 303 (386)
+.++|..+++.++
T Consensus 132 ~~~~~~~lk~~~~ 144 (216)
T KOG1962|consen 132 AMKENEALKKQLE 144 (216)
T ss_pred HHHHHHHHHHhhh
Confidence 3334444444444
No 165
>KOG4403|consensus
Probab=56.45 E-value=88 Score=33.47 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=14.9
Q ss_pred HHHhhhHHHHHHHHHHHhHHHHH
Q psy1888 263 VLDQKNYIEELNRHLNATVGNLQ 285 (386)
Q Consensus 263 ~ldQK~ylEElnr~l~~~~~~l~ 285 (386)
.+.|+.|-.|.++.|-..+..||
T Consensus 233 ay~Qnk~akehv~km~kdle~Lq 255 (575)
T KOG4403|consen 233 AYRQNKKAKEHVNKMMKDLEGLQ 255 (575)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Confidence 36677777777777755555543
No 166
>KOG1937|consensus
Probab=56.28 E-value=1.1e+02 Score=32.85 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhc
Q psy1888 348 MKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQA 385 (386)
Q Consensus 348 ~kllekd~~ekqdt~~~lr~ql~~~k~in~~~~~~~~~ 385 (386)
+.-|+..+.+++-.+..|.||++|++.-+++=|.++++
T Consensus 295 LaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~ 332 (521)
T KOG1937|consen 295 LAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLRE 332 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45567778899999999999999999999988777653
No 167
>KOG0612|consensus
Probab=55.65 E-value=2.6e+02 Score=33.59 Aligned_cols=29 Identities=3% Similarity=-0.177 Sum_probs=16.5
Q ss_pred cCccCCccHHHHHHhhccccceecccccC
Q psy1888 195 DALLMSDEAIVILGKLLSLNVIDCNLCVK 223 (386)
Q Consensus 195 ~AlL~d~E~~vL~~lL~GLn~IdF~l~lk 223 (386)
|.=+|+....+++.+=..-++=.|+++-+
T Consensus 346 W~~iR~~~pP~vPevssd~DTsnFd~~~d 374 (1317)
T KOG0612|consen 346 WDNIRESVPPVVPEVSSDDDTSNFDVDED 374 (1317)
T ss_pred hhhhhhcCCCCCCcCCCCCcccccccccc
Confidence 55566655556665555555666655443
No 168
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=55.43 E-value=1.5e+02 Score=33.82 Aligned_cols=100 Identities=22% Similarity=0.233 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---ccchhhhhh-cchHHHH
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQH---TSNLSVHEV-GLKAEME 345 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~---~~~el~~q~-~~k~e~e 345 (386)
+.-||-.|+.||.+....+|.+..-|..|.. .|..+.+||..+...+..--+. ..+..+.++ .+|-|.+
T Consensus 432 LqSlN~~Lq~ql~es~k~~e~lq~kneellk-------~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~ 504 (861)
T PF15254_consen 432 LQSLNMSLQNQLQESLKSQELLQSKNEELLK-------VIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVE 504 (861)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5567777888887766666666655554422 3444555555555433211100 011122222 4677777
Q ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHhH
Q psy1888 346 VAMKL-------LERDVHQKQDTIIELRRQLEDIKMIN 376 (386)
Q Consensus 346 ~a~kl-------lekd~~ekqdt~~~lr~ql~~~k~in 376 (386)
-||-- ||.-=.|.+.=-++|||-=.+|..++
T Consensus 505 eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~ 542 (861)
T PF15254_consen 505 EALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLR 542 (861)
T ss_pred HHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHH
Confidence 77521 33333677777889999888887665
No 169
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=55.11 E-value=1.7e+02 Score=26.68 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIA 305 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a 305 (386)
++++++.....+.+.+.....++.+.....-+++|..|
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A 86 (167)
T PRK08475 49 NFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEA 86 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777665555555554444444444433
No 170
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=55.00 E-value=65 Score=25.27 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
.|.|...-.|+..|...|.+|+.|+.....+.+.|.
T Consensus 14 a~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 14 AFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555444444333
No 171
>KOG0995|consensus
Probab=54.89 E-value=3.2e+02 Score=30.24 Aligned_cols=41 Identities=17% Similarity=0.432 Sum_probs=23.2
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
+..+-...+..-..+++|++...-.|..||.++..||....
T Consensus 285 ~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 285 MKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455556666555566666666666665544
No 172
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=54.88 E-value=1.9e+02 Score=27.29 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=19.8
Q ss_pred HHHHhHHHHHHHHhHhHhhhHHhHHH
Q psy1888 276 HLNATVGNLQTQVESLTTTNALMRED 301 (386)
Q Consensus 276 ~l~~~~~~l~~~~~~l~~~n~~~~ee 301 (386)
.|.+++.+++.+++.+..+|.-++.-
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~l 41 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQL 41 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888888888888888877543
No 173
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=54.77 E-value=1.6e+02 Score=32.52 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 347 AMKLLERDVHQKQDTIIELRRQLE 370 (386)
Q Consensus 347 a~kllekd~~ekqdt~~~lr~ql~ 370 (386)
-|+-++.++..|.+.+-.|..+++
T Consensus 455 ~~k~~~~e~~~Kee~~~qL~~e~e 478 (594)
T PF05667_consen 455 EIKEIEEEIRQKEELYKQLVKELE 478 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444443
No 174
>KOG4643|consensus
Probab=54.76 E-value=2.2e+02 Score=33.53 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhH--hHHHHH
Q psy1888 359 QDTIIELRRQLEDIKM--INLEMY 380 (386)
Q Consensus 359 qdt~~~lr~ql~~~k~--in~~~~ 380 (386)
-|.+++||.|.+.+.- .|.++|
T Consensus 584 idaL~alrrhke~LE~e~mnQql~ 607 (1195)
T KOG4643|consen 584 IDALNALRRHKEKLEEEIMNQQLF 607 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3788899999887643 366655
No 175
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=54.63 E-value=1.9e+02 Score=27.26 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc---ch---hh-------hhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 299 REDLSIAEKNLRILIQENENLKNQLANSSQHTS---NL---SV-------HEVGLKAEMEVAMKLLERDVHQKQDTIIEL 365 (386)
Q Consensus 299 ~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~---~e---l~-------~q~~~k~e~e~a~kllekd~~ekqdt~~~l 365 (386)
|..|..++.++..++.++..++-|.....+..+ +| |. .+| .+...+---+||+.+..-++++..-
T Consensus 85 K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ev--qQk~~~kn~lLEkKl~~l~~~lE~k 162 (201)
T PF13851_consen 85 KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEV--QQKTGLKNLLLEKKLQALSEQLEKK 162 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788888888888888877775443321 11 11 111 2222233457888888888888888
Q ss_pred HHHHHHHhH
Q psy1888 366 RRQLEDIKM 374 (386)
Q Consensus 366 r~ql~~~k~ 374 (386)
-.||.+|-+
T Consensus 163 eaqL~evl~ 171 (201)
T PF13851_consen 163 EAQLNEVLA 171 (201)
T ss_pred HHHHHHHHH
Confidence 888887644
No 176
>smart00338 BRLZ basic region leucin zipper.
Probab=54.42 E-value=39 Score=25.76 Aligned_cols=37 Identities=30% Similarity=0.484 Sum_probs=20.9
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQ 322 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e 322 (386)
..+.+|+.+++.|+.+|..|..+++ .|..|+..|+++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~-------~l~~e~~~lk~~ 62 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIE-------RLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3445566666666666666655544 344555555443
No 177
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=54.28 E-value=1.8e+02 Score=26.69 Aligned_cols=98 Identities=15% Similarity=0.293 Sum_probs=49.7
Q ss_pred hhHHHHHhh-------hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy1888 259 NMSLVLDQK-------NYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTS 331 (386)
Q Consensus 259 ~~~~~ldQK-------~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~ 331 (386)
.++.++++. ++.+||-+...+-+.+-..=++.+-..-+.-.+.++ .|..|=--++.+-+++- -
T Consensus 56 gi~qLy~~~~~~~~~~d~~~eLkkL~~sll~nfleLl~~l~~~P~~~~~ki~----~i~~L~~NmhhllNeyR---P--- 125 (162)
T PF05983_consen 56 GIRQLYPPDDDPSPSVDRKKELKKLNKSLLLNFLELLDILSKNPSQYERKIE----DIRLLFINMHHLLNEYR---P--- 125 (162)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHTTSS---CCCHHHHHH----HHHHHHHHHHHHHHHTH---H---
T ss_pred cccccCCCccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHH----HHHHHHHHHHHHHHHhC---H---
Confidence 455555555 566677776666666644444444333222222222 22233333333333211 1
Q ss_pred chhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy1888 332 NLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMI 375 (386)
Q Consensus 332 ~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~i 375 (386)
-|=.|.-+.+||+++.+|+.++..+|+.+++++.+
T Consensus 126 ---------hQARetLi~~me~Ql~~kr~~i~~i~~~~~~~~~~ 160 (162)
T PF05983_consen 126 ---------HQARETLIMMMEEQLEEKREEIEEIRKVCEKAREV 160 (162)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234456889999999999999999999999864
No 178
>KOG3809|consensus
Probab=54.23 E-value=77 Score=33.91 Aligned_cols=98 Identities=14% Similarity=0.254 Sum_probs=72.8
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQK 358 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ek 358 (386)
.++++|+.+|+.|.++--=+-.-+..+..-|-+.|-|++.-++|+.+..+.+.+|-.+--+.-.=+..-+.-|++.|.+-
T Consensus 479 ~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~ 558 (583)
T KOG3809|consen 479 EKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDT 558 (583)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHH
Confidence 37888999999999998888888888899999999999999998887666655543333444444555567889999988
Q ss_pred HHHHHHHHHH-HHHHhHhH
Q psy1888 359 QDTIIELRRQ-LEDIKMIN 376 (386)
Q Consensus 359 qdt~~~lr~q-l~~~k~in 376 (386)
+|-|..-|-- |..-+.|.
T Consensus 559 ~e~i~~~r~~IL~Ne~rIq 577 (583)
T KOG3809|consen 559 KEEISKARGRILNNEKRIQ 577 (583)
T ss_pred HHHHHHHHHHHhhhHHHHH
Confidence 8888776643 33334443
No 179
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=54.08 E-value=1.4e+02 Score=25.51 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHH
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQ 314 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~ 314 (386)
++.+....+..++..++++++.+... .+++..+.+.|..+..
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~----~~e~~~~~~~l~~l~~ 44 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEA----IAEYEQAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 34556666677777777777777766 6666766777777654
No 180
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=53.54 E-value=69 Score=27.80 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=31.5
Q ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 261 SLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 261 ~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
+.++|+-.-+|+-...+-.++..|+..+.++-++|+.++-|-+
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~ 46 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLEND 46 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778877777777888888888777777777755544
No 181
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=53.31 E-value=25 Score=34.92 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=21.1
Q ss_pred hHhHhhhHHhHHHHHHHHH----HHHHHHHHHHHHHHHhhh
Q psy1888 289 ESLTTTNALMREDLSIAEK----NLRILIQENENLKNQLAN 325 (386)
Q Consensus 289 ~~l~~~n~~~~eel~~a~~----~i~~lq~e~~~l~~e~~~ 325 (386)
..+.++|..|++|++..+. ...++++||++||+.+..
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445566666665543322 222388888888876553
No 182
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=53.13 E-value=1.4e+02 Score=26.58 Aligned_cols=52 Identities=4% Similarity=0.287 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
.+..-.|||.+.+..+-.|+|+..+-+...++|+..++-.+...+.+...++
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5667778888888888888888888888887777766666666666555544
No 183
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=53.13 E-value=61 Score=24.99 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=15.4
Q ss_pred HHHHhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 276 HLNATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 276 ~l~~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
+|+++|..|..|++.|...-.-++-++.
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666555555444433
No 184
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.08 E-value=55 Score=25.23 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=23.1
Q ss_pred HHHHHhHHHHHHHHhHhHhhhHHhHHHHHHH
Q psy1888 275 RHLNATVGNLQTQVESLTTTNALMREDLSIA 305 (386)
Q Consensus 275 r~l~~~~~~l~~~~~~l~~~n~~~~eel~~a 305 (386)
..++.++..++.+++.+..+|..++++++..
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777788888888888888887777654
No 185
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=52.85 E-value=2.1e+02 Score=34.07 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=6.1
Q ss_pred HhHHHHHHHHhHhHhh
Q psy1888 279 ATVGNLQTQVESLTTT 294 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~ 294 (386)
.++..+..+.+.++++
T Consensus 614 ~~l~~~~~~~~~~e~~ 629 (1201)
T PF12128_consen 614 DQLQSAEERQEELEKQ 629 (1201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 186
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.81 E-value=84 Score=31.30 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=7.9
Q ss_pred HHHhHHHHHHHHhHhHhh
Q psy1888 277 LNATVGNLQTQVESLTTT 294 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~ 294 (386)
+...+.++|.+|++|..+
T Consensus 43 ~~~~~~~~q~ei~~L~~q 60 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQ 60 (265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 187
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=52.46 E-value=1.1e+02 Score=26.99 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=42.7
Q ss_pred hhHHHHHhhhHHHHHH------HHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 259 NMSLVLDQKNYIEELN------RHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 259 ~~~~~ldQK~ylEEln------r~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
.+..+++...++++.+ +.+...+..+.....++.+.|-.+..+|+..++.+.++.++...++.++..
T Consensus 8 eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~ 80 (150)
T PF07200_consen 8 ELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQE 80 (150)
T ss_dssp HHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555544 444556666777777777777777778888888888888888888877664
No 188
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=52.39 E-value=1.4e+02 Score=25.05 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=12.0
Q ss_pred HhhhHHHHHHHHHHHhHHHHHHHHhHhH
Q psy1888 265 DQKNYIEELNRHLNATVGNLQTQVESLT 292 (386)
Q Consensus 265 dQK~ylEElnr~l~~~~~~l~~~~~~l~ 292 (386)
.|.+.+++--..+.++...++..+.+++
T Consensus 6 ~~~~~l~~~i~~l~~~~~~l~~~~~e~~ 33 (129)
T cd00890 6 AQLQQLQQQLEALQQQLQKLEAQLTEYE 33 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 189
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=52.38 E-value=2.6e+02 Score=28.88 Aligned_cols=84 Identities=15% Similarity=0.075 Sum_probs=36.5
Q ss_pred CccchhHHHHHH--HHhhhhHHHHHHHHHhCchhHHHhcccccCccCCccH-HHHHHhhccccceecccccCCCCCCCCC
Q psy1888 155 THMGRARAWLRL--ALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEA-IVILGKLLSLNVIDCNLCVKEEDLDCQQ 231 (386)
Q Consensus 155 T~~GRgRAWIRl--AL~eK~Ls~yL~~Ll~n~~~lL~~~Ye~~AlL~d~E~-~vL~~lL~GLn~IdF~l~lk~~~LD~~~ 231 (386)
+.+.+-..-|+- .+.++.+......+..+. ..-|.=..=+.|... .-|=....+|+.-..++.++...--.++
T Consensus 119 ~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr----~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~ 194 (384)
T PF03148_consen 119 KELLKEVELIENIKRLLQRTLEQAEEQLRLLR----AARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPK 194 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccc
Confidence 344444444442 355566666666665543 122222222333332 3344555566554444444332222233
Q ss_pred ccccchhhhhc
Q psy1888 232 GVIDFSLYLRS 242 (386)
Q Consensus 232 ~vId~s~yl~~ 242 (386)
..+++..|...
T Consensus 195 ~~~tp~~W~~~ 205 (384)
T PF03148_consen 195 NSSTPESWEEF 205 (384)
T ss_pred cCCChHHHHHH
Confidence 44444445443
No 190
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=51.94 E-value=2.2e+02 Score=29.81 Aligned_cols=28 Identities=11% Similarity=0.328 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhh
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTN 295 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n 295 (386)
.|+++-...++.++...+.++.....+|
T Consensus 164 ~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 164 RFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3555555555556665555555555444
No 191
>KOG4005|consensus
Probab=51.82 E-value=1.1e+02 Score=30.28 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHH
Q psy1888 299 REDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEME 345 (386)
Q Consensus 299 ~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e 345 (386)
|+-.+.-...|.+|-+|++.|+.||...|...+.-+..+-.+..+||
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33333334588899999999998888766654443333333333333
No 192
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=51.72 E-value=1.6e+02 Score=33.39 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=3.9
Q ss_pred cccCccCCc
Q psy1888 193 ETDALLMSD 201 (386)
Q Consensus 193 e~~AlL~d~ 201 (386)
.+.-+++|+
T Consensus 402 ~~sLvLlDE 410 (771)
T TIGR01069 402 ENSLVLFDE 410 (771)
T ss_pred CCcEEEecC
Confidence 334444444
No 193
>KOG2264|consensus
Probab=51.70 E-value=47 Score=36.65 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=47.6
Q ss_pred hHHHHHhhhHHH----------HHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 260 MSLVLDQKNYIE----------ELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 260 ~~~~ldQK~ylE----------Elnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
++.+.+||--++ -....|++.++++-.|++++++.-...+-||.+.|+.|...|.+++.+++.|.
T Consensus 78 ~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 78 GRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 666777775433 12234556677788888888888777788888888888888888888887766
No 194
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=51.08 E-value=2.3e+02 Score=29.70 Aligned_cols=11 Identities=45% Similarity=0.486 Sum_probs=5.3
Q ss_pred eecccceeeec
Q psy1888 14 IYLCNFRVSVD 24 (386)
Q Consensus 14 ~~~~~~~~~~~ 24 (386)
+|--.+++.|+
T Consensus 38 ~Y~a~a~lli~ 48 (498)
T TIGR03007 38 RYEASARVYVD 48 (498)
T ss_pred ceEEeEEEEEc
Confidence 44444455554
No 195
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=50.71 E-value=1.5e+02 Score=24.77 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDI 372 (386)
Q Consensus 340 ~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~ 372 (386)
...+++..++-|++.+.+.+..+..++..|.+.
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888889999888888888888887764
No 196
>PRK02119 hypothetical protein; Provisional
Probab=50.33 E-value=99 Score=24.70 Aligned_cols=16 Identities=6% Similarity=0.177 Sum_probs=6.0
Q ss_pred HhHHHHHHHHhHhHhh
Q psy1888 279 ATVGNLQTQVESLTTT 294 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~ 294 (386)
+.+.+|..|+.-.+.+
T Consensus 9 ~Ri~~LE~rla~QE~t 24 (73)
T PRK02119 9 NRIAELEMKIAFQENL 24 (73)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 197
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=50.31 E-value=1.2e+02 Score=29.54 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=20.1
Q ss_pred HhHhhhHHhHHHHHHHHHHHH---HHHHHHHHHHHHhh
Q psy1888 290 SLTTTNALMREDLSIAEKNLR---ILIQENENLKNQLA 324 (386)
Q Consensus 290 ~l~~~n~~~~eel~~a~~~i~---~lq~e~~~l~~e~~ 324 (386)
.+.++|..+++|++..+..+. ++++|+++|++-+.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555444333333 77888888887554
No 198
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=50.26 E-value=1.4e+02 Score=32.64 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHhh
Q psy1888 360 DTIIELRRQLEDIKMINLEMYKKLQ 384 (386)
Q Consensus 360 dt~~~lr~ql~~~k~in~~~~~~~~ 384 (386)
+....+++|++++|+..-+=|..|.
T Consensus 244 ~~~~~~~~~~~~lk~ap~~D~~~L~ 268 (555)
T TIGR03545 244 NDKKQLKADLAELKKAPQNDLKRLE 268 (555)
T ss_pred HhHHHHHHHHHHHHhccHhHHHHHH
Confidence 3344677777777776665555544
No 199
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=50.15 E-value=1.8e+02 Score=25.63 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
=+.+-.+.+.+....|+..++.|+..++....+++.+.+....++.++..+..
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555555555544443
No 200
>KOG0980|consensus
Probab=49.60 E-value=4.9e+02 Score=30.43 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=32.5
Q ss_pred cccCCChHHHHHHHHHHHHHhcCCCCC-------CCC-------CCC-CCCchHHHHHHHh
Q psy1888 90 MLDSDHMPLQHFFIVLEHVLRHGLKPK-------KGL-------LGP-KKELWDILQLVEK 135 (386)
Q Consensus 90 ~I~dd~~~L~~LC~~LE~iL~HGLK~k-------~~~-------~g~-~~~fW~~l~~~~k 135 (386)
|+-.+......||.+|=.+|+-|-+.- ++| +|. .++|=++|+.+++
T Consensus 51 PL~~~~VltwKfchllHKvLreGHpsal~es~r~r~~i~~l~r~w~~ls~~Yg~lI~~Y~k 111 (980)
T KOG0980|consen 51 PLENHEVLTWKFCHLLHKVLREGHPSALEESQRYKKWITQLGRMWGHLSDGYGPLIRAYVK 111 (980)
T ss_pred ccccchHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 566666677889999999999998763 122 222 3578788887765
No 201
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=49.25 E-value=52 Score=25.31 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=25.2
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHH
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRIL 312 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~l 312 (386)
+|+.+..+...++.++++|..++++++.-+.++..+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777656555444
No 202
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.23 E-value=42 Score=30.32 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=7.5
Q ss_pred HHHHHhHHHHHHHHhHhH
Q psy1888 275 RHLNATVGNLQTQVESLT 292 (386)
Q Consensus 275 r~l~~~~~~l~~~~~~l~ 292 (386)
+.+...++.|.+++..+.
T Consensus 89 ~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 89 AELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333444444444444443
No 203
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.23 E-value=65 Score=26.11 Aligned_cols=43 Identities=33% Similarity=0.394 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHH
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRIL 312 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~l 312 (386)
+-|-|..|...+.++|...+.|+..|..+|+|-..=..+|.+|
T Consensus 30 LKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 30 LKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777888888888888888888888876544444443
No 204
>PRK02793 phi X174 lysis protein; Provisional
Probab=48.97 E-value=96 Score=24.67 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=16.0
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
+.+.+|..|+.-.+.+...+-+.+..-...|..|+.++..|.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~ 49 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT 49 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333334444444433
No 205
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.73 E-value=86 Score=24.20 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=29.3
Q ss_pred HHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHH
Q psy1888 274 NRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRIL 312 (386)
Q Consensus 274 nr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~l 312 (386)
+..|+++|..|...+..+...-..-|+|-+.|+.+|-..
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346778888888888888877777788888887776543
No 206
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=48.59 E-value=51 Score=35.39 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1888 352 ERDVHQKQDTIIELRRQL 369 (386)
Q Consensus 352 ekd~~ekqdt~~~lr~ql 369 (386)
|..|.+.++++..|++|+
T Consensus 103 e~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 207
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=48.54 E-value=1.7e+02 Score=24.75 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDI 372 (386)
Q Consensus 340 ~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~ 372 (386)
....++.+++-|||.+...+..+..++++|.++
T Consensus 75 r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 75 KKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577788888888888888888888887654
No 208
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=48.41 E-value=43 Score=35.93 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=24.9
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 280 TVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQL 323 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~ 323 (386)
+.++|+.|++.++.+...+..+++.....|.++++|+..|+.+.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444444556667777777776654
No 209
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=48.34 E-value=48 Score=29.61 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=27.6
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQL 323 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~ 323 (386)
+.+++..+|..+...+..-.+++.|+..-...|..|++++..+...|
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n 124 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRAN 124 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566656666666666666666666666655443
No 210
>smart00338 BRLZ basic region leucin zipper.
Probab=48.30 E-value=54 Score=24.97 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHH
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMREDL 302 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel 302 (386)
+|.-+..|+++...|+.+++.+..++..++.++
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445666777777777777777777766654
No 211
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=47.59 E-value=2.2e+02 Score=25.85 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=17.8
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENL 319 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l 319 (386)
+.+..+.+.+..++.......+.....++.+...+..+.++.++...+
T Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 102 ERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333
No 212
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.25 E-value=1.1e+02 Score=28.16 Aligned_cols=6 Identities=17% Similarity=0.839 Sum_probs=2.6
Q ss_pred chHHHH
Q psy1888 126 LWDILQ 131 (386)
Q Consensus 126 fW~~l~ 131 (386)
||..+-
T Consensus 4 ~~~lvf 9 (192)
T PF05529_consen 4 QWSLVF 9 (192)
T ss_pred HHHHHH
Confidence 344443
No 213
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=47.10 E-value=39 Score=26.54 Aligned_cols=48 Identities=13% Similarity=0.206 Sum_probs=29.0
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
++..+.+|+.|+.-.+.+...+-+.+..-...|..|+.++..|.....
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777766666655555555566666666666654433
No 214
>KOG0243|consensus
Probab=46.92 E-value=4.1e+02 Score=31.50 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=13.2
Q ss_pred HHHHHHHHhhh--hHHHHHHHHHhCc
Q psy1888 161 RAWLRLALMQK--KLADYLQVLVDHR 184 (386)
Q Consensus 161 RAWIRlAL~eK--~Ls~yL~~Ll~n~ 184 (386)
||-=---.|+. .|.+.+.+|+++.
T Consensus 312 RArEAG~INqSLLTLGRVInALVe~s 337 (1041)
T KOG0243|consen 312 RAREAGEINQSLLTLGRVINALVEHS 337 (1041)
T ss_pred hhHHhhhhhHHHHHHHHHHHHHHccC
Confidence 55333333333 3577777887664
No 215
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=46.71 E-value=3.5e+02 Score=30.10 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=26.9
Q ss_pred HHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 276 HLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 276 ~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
++......++.|+..+..+...+++|.......|.+|...+..|+++..
T Consensus 19 ~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 19 QLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444455555555555555555555555555555555555555444
No 216
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=46.33 E-value=2.6e+02 Score=31.96 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=16.4
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLR 310 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~ 310 (386)
..|+.||.+|+.|+.++..--.+|..++.++.
T Consensus 392 ~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 392 RKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445666666666555444444444444444
No 217
>KOG0996|consensus
Probab=46.31 E-value=3.7e+02 Score=32.35 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMRED-------LSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~ee-------l~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
+|--+..++.+++.+++++..++++-.+.+.+ .+-+.+.|.+.|.|..+|.....
T Consensus 396 ~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~ 457 (1293)
T KOG0996|consen 396 LEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLE 457 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHH
Confidence 33444455555666666666665555554443 33455566666666666654433
No 218
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=46.27 E-value=3.1e+02 Score=30.58 Aligned_cols=20 Identities=10% Similarity=0.328 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q psy1888 355 VHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 355 ~~ekqdt~~~lr~ql~~~k~ 374 (386)
--+++-.++.++.|++++++
T Consensus 311 y~~~hP~v~~l~~qi~~l~~ 330 (754)
T TIGR01005 311 MLANHPRVVAAKSSLADLDA 330 (754)
T ss_pred hCCCCHHHHHHHHHHHHHHH
Confidence 44455556666666666554
No 219
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=46.11 E-value=96 Score=24.61 Aligned_cols=48 Identities=31% Similarity=0.459 Sum_probs=24.3
Q ss_pred HHHhHHHHHHHHhHhHhhhH-------HhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 277 LNATVGNLQTQVESLTTTNA-------LMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~-------~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
|++.+..|+.++|.+...++ .+..|=..|-..+-.+-+++..|+.|+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e 57 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENE 57 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554444 4444444444455555555555555444
No 220
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=45.87 E-value=3.5e+02 Score=27.68 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1888 347 AMKLLERDVHQKQDTIIELRR 367 (386)
Q Consensus 347 a~kllekd~~ekqdt~~~lr~ 367 (386)
.+.-||++.+.||.++..||.
T Consensus 143 ~i~~Le~e~~~~q~~le~Lr~ 163 (310)
T PF09755_consen 143 KIERLEKEKSAKQEELERLRR 163 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 345677777777777777765
No 221
>KOG2685|consensus
Probab=45.56 E-value=4e+02 Score=28.32 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1888 345 EVAMKLLERDVHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 345 e~a~kllekd~~ekqdt~~~lr~ql~~~k~ 374 (386)
..|=-.|=.++|+=++|+-+|+++|++-+.
T Consensus 343 D~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~ 372 (421)
T KOG2685|consen 343 DQAQYRLVDEVHELDDTVAALKEKLDEAED 372 (421)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566778899999999999999998775
No 222
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.55 E-value=2e+02 Score=32.95 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1888 355 VHQKQDTIIELRRQLED 371 (386)
Q Consensus 355 ~~ekqdt~~~lr~ql~~ 371 (386)
+-+.+| +.+|+||+.
T Consensus 769 ~vd~~~--~~~r~~Lqk 783 (1104)
T COG4913 769 IVDIER--IEHRRQLQK 783 (1104)
T ss_pred hhhHHH--HHHHHHHHH
Confidence 444455 588888874
No 223
>PRK00295 hypothetical protein; Provisional
Probab=45.53 E-value=1.2e+02 Score=23.88 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMRE 300 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~e 300 (386)
.|.|.....|+..|...|..|+.++.+-..+.+
T Consensus 15 a~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 15 AFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555544444433
No 224
>PRK04325 hypothetical protein; Provisional
Probab=45.46 E-value=1.2e+02 Score=24.33 Aligned_cols=40 Identities=13% Similarity=0.124 Sum_probs=15.7
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1888 280 TVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENL 319 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l 319 (386)
.+.+|+.|+.-.+.+...+-+.+..-...|..|+.++..|
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333333333333344433333
No 225
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=45.31 E-value=1.8e+02 Score=32.94 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENEN 318 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~ 318 (386)
-|.+|+|..++.+..+....+=.+-..-..++.|....+..+..++++...
T Consensus 45 l~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~ 95 (766)
T PF10191_consen 45 LYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKA 95 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999998888877666666655555655555544455555544443
No 226
>PRK00736 hypothetical protein; Provisional
Probab=45.31 E-value=1.2e+02 Score=23.86 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMRED 301 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~ee 301 (386)
.|.|.....|+..|...|.+|+.++.+-..+.+.
T Consensus 15 afqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r 48 (68)
T PRK00736 15 AEQEKTIEELSDQLAEQWKTVEQMRKKLDALTER 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444444333
No 227
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=45.28 E-value=36 Score=28.98 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy1888 347 AMKLLERDVHQKQDTIIELRRQLEDIKMI 375 (386)
Q Consensus 347 a~kllekd~~ekqdt~~~lr~ql~~~k~i 375 (386)
....||+.++++..-|.+|..||.++|.+
T Consensus 52 k~~~le~~l~e~~~~l~~lq~qL~~LK~v 80 (100)
T PF06428_consen 52 KNEQLEKQLKEKEALLESLQAQLKELKTV 80 (100)
T ss_dssp HHHHHHHCTTHHCHCCCHCTSSSSHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888887765
No 228
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=45.07 E-value=95 Score=26.67 Aligned_cols=45 Identities=18% Similarity=0.342 Sum_probs=35.2
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHH
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSI 304 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~ 304 (386)
+.-+++.+.|+-.-+..++..+..++.+.+.++....+.++++..
T Consensus 68 ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~ 112 (118)
T PF13815_consen 68 IEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKK 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555678888888888888888888888888888887777777653
No 229
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=44.86 E-value=63 Score=27.03 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------------hcc
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA-----------------------------NSS 327 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~-----------------------------~~~ 327 (386)
++.++.+++++++.+... .+++..++..+..++. ...+.. ...
T Consensus 1 l~~~l~~l~~~~~~l~~~----~~e~~~~~~~l~~l~~----~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE 72 (120)
T PF02996_consen 1 LQEELENLQQQIEQLEEQ----IEEYEEAKETLEELKK----EKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVE 72 (120)
T ss_dssp HCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHTT------TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc----cCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEE
Q ss_pred ccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 328 QHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDI 372 (386)
Q Consensus 328 ~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~ 372 (386)
..+++-.+.=-....+++..++-+++++.+.++.+..+++.++.+
T Consensus 73 ~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 73 MSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 230
>PRK14160 heat shock protein GrpE; Provisional
Probab=44.68 E-value=2.6e+02 Score=26.94 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
.|+--+.-+..+..|+.+++.++.....++++++..++..+-++.+.+-.|.
T Consensus 45 ~~~~~~~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 45 IEDSEESNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444456667778888888877777777777777777777776655553
No 231
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.60 E-value=71 Score=31.38 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=26.2
Q ss_pred HHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 283 NLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 283 ~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
++..|++++.++|+.+.++|+.......++|+.+..++-|++.
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~ 181 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSR 181 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665555666666666666666554
No 232
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=44.45 E-value=3.5e+02 Score=32.81 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q psy1888 351 LERDVHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 351 lekd~~ekqdt~~~lr~ql~~~k~ 374 (386)
-++++.+|+.....+|+.+++...
T Consensus 352 ~~~~~~~a~~~~e~~~~~~~~~~~ 375 (1353)
T TIGR02680 352 ARQAIREAESRLEEERRRLDEEAG 375 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577888888888888887654
No 233
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=44.29 E-value=2.1e+02 Score=24.82 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 343 EMEVAMKLLERDVHQKQDTIIELRRQLEDI 372 (386)
Q Consensus 343 e~e~a~kllekd~~ekqdt~~~lr~ql~~~ 372 (386)
.++..++-|++++.++++.+..+++++.++
T Consensus 105 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 105 ELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555543
No 234
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.09 E-value=2.7e+02 Score=31.07 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccc---cchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy1888 305 AEKNLRILIQENENLKNQLANSSQHT---SNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYK 381 (386)
Q Consensus 305 a~~~i~~lq~e~~~l~~e~~~~~~~~---~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in~~~~~ 381 (386)
-...+..|++|+..|+.++......+ +.+|+ +++.+++. =....+.+..++-.|..|+.-|.+-+.---++-.
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~---~~~r~~~~-~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELE---RFRREVRD-KVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444333222 22232 45555552 1345667888899999999999887665444444
Q ss_pred Hh
Q psy1888 382 KL 383 (386)
Q Consensus 382 ~~ 383 (386)
++
T Consensus 503 ~l 504 (652)
T COG2433 503 KL 504 (652)
T ss_pred HH
Confidence 43
No 235
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=44.08 E-value=3.1e+02 Score=26.63 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=39.0
Q ss_pred HHHHHHHHhHhHhhhHHhHHHHHH---HHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHH
Q psy1888 281 VGNLQTQVESLTTTNALMREDLSI---AEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQ 357 (386)
Q Consensus 281 ~~~l~~~~~~l~~~n~~~~eel~~---a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~e 357 (386)
++++..|+..+++.-..+..+++. -...|.++..|++.|..|-.. +..||-+=-.=...||.-+|-.+.+-..
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~----h~eeLrqI~~DIn~lE~iIkqa~~er~~ 78 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMA----HVEELRQINQDINTLENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444432 234566777777777655332 2222211111233456566655555444
Q ss_pred HHHHHHHH
Q psy1888 358 KQDTIIEL 365 (386)
Q Consensus 358 kqdt~~~l 365 (386)
.++.|..+
T Consensus 79 ~~~~i~r~ 86 (230)
T PF10146_consen 79 RQEKIQRL 86 (230)
T ss_pred HHHHHHHH
Confidence 44444333
No 236
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=44.08 E-value=2.5e+02 Score=29.05 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=17.0
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENL 319 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l 319 (386)
+++|+..+.++..+...+-+..+++...|...+.++..++..+
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333333333333333444444444444444444333
No 237
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=43.16 E-value=3.5e+02 Score=26.93 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHH
Q psy1888 354 DVHQKQDTIIELRRQLEDIKMINLE 378 (386)
Q Consensus 354 d~~ekqdt~~~lr~ql~~~k~in~~ 378 (386)
+-=-|.=.|..|..||+.+|.-.-+
T Consensus 114 EYPvK~vqIa~L~rqlq~lk~~qqd 138 (258)
T PF15397_consen 114 EYPVKAVQIANLVRQLQQLKDSQQD 138 (258)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445677888888888865443
No 238
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.14 E-value=1.5e+02 Score=31.24 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=6.3
Q ss_pred HHHHHHHHhHhHh
Q psy1888 281 VGNLQTQVESLTT 293 (386)
Q Consensus 281 ~~~l~~~~~~l~~ 293 (386)
...|+..++.|+.
T Consensus 228 ~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 228 QSRLEESIEKLKE 240 (395)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555544
No 239
>PF15294 Leu_zip: Leucine zipper
Probab=42.94 E-value=1.2e+02 Score=30.44 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=45.7
Q ss_pred HHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 285 QTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIE 364 (386)
Q Consensus 285 ~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~ 364 (386)
..-+...++++..+++.|..++..++..|+++.. .++|||.-.+= +=-...|| .=+.-|.|-|-.
T Consensus 207 ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~-----------aekeLekKfqq-T~ay~NMk---~~ltkKn~QiKe 271 (278)
T PF15294_consen 207 EKALQDKESQQKALEETLQSCKHELLRVQEQLSL-----------AEKELEKKFQQ-TAAYRNMK---EILTKKNEQIKE 271 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhc-----------chhhHHHHhCc-cHHHHHhH---HHHHhccHHHHH
Confidence 4445566777888899999999999999998544 35556543321 11122232 224567788888
Q ss_pred HHHHHH
Q psy1888 365 LRRQLE 370 (386)
Q Consensus 365 lr~ql~ 370 (386)
||+.|.
T Consensus 272 LRkrl~ 277 (278)
T PF15294_consen 272 LRKRLA 277 (278)
T ss_pred HHHHhc
Confidence 988874
No 240
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=42.87 E-value=4e+02 Score=30.18 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=22.2
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
++.+.+.+.....++.+.++.|+.+...|.+..+.+..
T Consensus 584 l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 584 LQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666566666666666665555555554443
No 241
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=42.79 E-value=77 Score=24.05 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhH-------HHHHHHHhHhHhhhHHhHHHHH
Q psy1888 270 IEELNRHLNATV-------GNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 270 lEElnr~l~~~~-------~~l~~~~~~l~~~n~~~~eel~ 303 (386)
++|+.+.+.+.- +....+|..++.+|..++.+|.
T Consensus 6 l~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 6 LEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred HHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 555555554433 1134444444444444444443
No 242
>PRK04406 hypothetical protein; Provisional
Probab=42.50 E-value=1.4e+02 Score=24.08 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=8.4
Q ss_pred HHhHHHHHHHHhHhHhhhHHh
Q psy1888 278 NATVGNLQTQVESLTTTNALM 298 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~ 298 (386)
++.+.+|..|+.-.+.+...+
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~L 30 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEEL 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333
No 243
>KOG3156|consensus
Probab=42.37 E-value=2.7e+02 Score=27.04 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=16.2
Q ss_pred HHHHHHHH-HHHHHHHHHHHhHhHH
Q psy1888 354 DVHQKQDT-IIELRRQLEDIKMINL 377 (386)
Q Consensus 354 d~~ekqdt-~~~lr~ql~~~k~in~ 377 (386)
++.-|-|+ +.+||.|++++|.=-+
T Consensus 174 e~s~kId~Ev~~lk~qi~s~K~qt~ 198 (220)
T KOG3156|consen 174 EISTKIDQEVTNLKTQIESVKTQTI 198 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555 4589999999986443
No 244
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=42.04 E-value=3.3e+02 Score=26.49 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q psy1888 347 AMKLLERDVHQKQDTIIELRRQLEDIKMINL 377 (386)
Q Consensus 347 a~kllekd~~ekqdt~~~lr~ql~~~k~in~ 377 (386)
-+..|+.....|..-...|+++|...+.-..
T Consensus 90 ~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 90 EIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666676777777777777665433
No 245
>PTZ00464 SNF-7-like protein; Provisional
Probab=41.99 E-value=3.2e+02 Score=26.17 Aligned_cols=24 Identities=0% Similarity=0.169 Sum_probs=13.5
Q ss_pred HHHHHhHHHHHHHHhHhHhhhHHh
Q psy1888 275 RHLNATVGNLQTQVESLTTTNALM 298 (386)
Q Consensus 275 r~l~~~~~~l~~~~~~l~~~n~~~ 298 (386)
..++.++..|+.|+..++.+..+.
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~a 44 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKL 44 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666677765544433333
No 246
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=41.90 E-value=57 Score=25.46 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=26.0
Q ss_pred HHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 285 QTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 285 ~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
+.||.+++++-.=|++|-+. .+..|-+|.+.|+.+|+.
T Consensus 2 ~~qv~s~e~~i~FLq~eH~~---tL~~LH~EIe~Lq~~~~d 39 (60)
T PF14916_consen 2 EQQVQSLEKSILFLQQEHAQ---TLKGLHAEIERLQKRNKD 39 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccc
Confidence 45666666666666666554 677778888888877764
No 247
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=41.83 E-value=1e+02 Score=25.73 Aligned_cols=41 Identities=12% Similarity=0.261 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHH
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRIL 312 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~l 312 (386)
|..-.++..+..+..+++.++++-..+.+++...+..|.++
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555544444444444444444443
No 248
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.73 E-value=1.6e+02 Score=27.00 Aligned_cols=9 Identities=22% Similarity=0.154 Sum_probs=4.1
Q ss_pred hHHHHHhhh
Q psy1888 260 MSLVLDQKN 268 (386)
Q Consensus 260 ~~~~ldQK~ 268 (386)
++.-..|.|
T Consensus 95 ~~~fraQRN 103 (192)
T PF05529_consen 95 AKKFRAQRN 103 (192)
T ss_pred HHHHHHHHh
Confidence 444445543
No 249
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=41.56 E-value=2.8e+02 Score=28.41 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q psy1888 342 AEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINL 377 (386)
Q Consensus 342 ~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in~ 377 (386)
+|++..-+-|.+++..|++.|.+|..+|+.++..=.
T Consensus 111 ~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~ 146 (355)
T PF09766_consen 111 KELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAK 146 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345555677778899999999999999999876544
No 250
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.31 E-value=2.1e+02 Score=25.74 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=14.2
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
+...+.+|+.++.+++.....+..||.
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555544
No 251
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=41.28 E-value=8 Score=35.35 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=16.6
Q ss_pred ccceeeecCcceeecccCCccc
Q psy1888 17 CNFRVSVDGEWLCLKQLDDVEV 38 (386)
Q Consensus 17 ~~~~~~~~g~~~~l~~l~~~~~ 38 (386)
=.+||||||||---+.+.+..+
T Consensus 94 LDLRVCYNGEWy~tr~vs~~ai 115 (155)
T PF10777_consen 94 LDLRVCYNGEWYNTRFVSDQAI 115 (155)
T ss_pred eEEeEEEcceeeeeccCCHHHH
Confidence 3689999999987766555544
No 252
>KOG0240|consensus
Probab=41.19 E-value=3.6e+02 Score=29.85 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Q psy1888 267 KNYIEELNRHLNATVGNLQTQVESLTTTNALMREDL-------SIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 267 K~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel-------~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
..|++|.+.+|..|+-+...+++....-..+++.++ +..+......|.|+..+.++++
T Consensus 416 ~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e 480 (607)
T KOG0240|consen 416 EDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENE 480 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 346777777777666665555555444444444332 2233333445555555544433
No 253
>PRK00295 hypothetical protein; Provisional
Probab=41.17 E-value=84 Score=24.75 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=22.2
Q ss_pred HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 278 NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
++.+.+|+.|+.-.+.+...+-+.+..-...|..|+.++..|..
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444544444444445555555555543
No 254
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=41.03 E-value=1.8e+02 Score=23.47 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=36.3
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHH
Q psy1888 280 TVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQ 359 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekq 359 (386)
|+.+....++.|.++|=.+ |.+|--|.+.+...-+ ...+.-+..-| |+.+.+.-|.+++.+++
T Consensus 1 tlrEqe~~i~~L~KENF~L-------KLrI~fLee~l~~~~~------~~~~~~~keNi----eLKve~~~L~~el~~~~ 63 (75)
T PF07989_consen 1 TLREQEEQIDKLKKENFNL-------KLRIYFLEERLQKLGP------ESIEELLKENI----ELKVEVESLKRELQEKK 63 (75)
T ss_pred CHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHhccc------ccHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3556667778888888777 3445555555543221 11111111111 23333455666667666
Q ss_pred HHHHHHHHH
Q psy1888 360 DTIIELRRQ 368 (386)
Q Consensus 360 dt~~~lr~q 368 (386)
..|..+-+.
T Consensus 64 ~~l~~a~~~ 72 (75)
T PF07989_consen 64 KLLKEAEKA 72 (75)
T ss_pred HHHHHHHHH
Confidence 665555443
No 255
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.02 E-value=2.5e+02 Score=24.64 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHH---HHHHHHHHHHHHHHHHHHHHHh
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALMRED---LSIAEKNLRILIQENENLKNQL 323 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~ee---l~~a~~~i~~lq~e~~~l~~e~ 323 (386)
-+|-=...+..++..|++.=+.+..+--++.++ +..+...+..|+.++..+....
T Consensus 27 ~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 27 RLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555444333 3444455666666666665433
No 256
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.82 E-value=1.2e+02 Score=28.12 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=20.0
Q ss_pred HHHHHHHhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 273 LNRHLNATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 273 lnr~l~~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
=|..+..++..|+.+++.|+++|.++++++.
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677777777777666655554
No 257
>PRK00846 hypothetical protein; Provisional
Probab=40.73 E-value=1.5e+02 Score=24.18 Aligned_cols=44 Identities=18% Similarity=0.047 Sum_probs=18.7
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
+++.+.+|..|+.-.+.+-..+-+.+......|..|++++..|.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~ 54 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 54 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444434443333333334444444444443
No 258
>KOG4196|consensus
Probab=40.68 E-value=79 Score=28.40 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=22.2
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHH
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILI 313 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq 313 (386)
||++-..|+++|+.|..+|+.+..|+.+-+.....|+
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666555554444
No 259
>KOG3501|consensus
Probab=40.67 E-value=1.8e+02 Score=25.38 Aligned_cols=55 Identities=31% Similarity=0.451 Sum_probs=42.5
Q ss_pred hHHHHHhhhHHHHHHH------------HHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHH
Q psy1888 260 MSLVLDQKNYIEELNR------------HLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQ 314 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr------------~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~ 314 (386)
+-.+.|-++|.+-+.| |+++..+++..+|++|++..+=+...+..|.+++.++-+
T Consensus 43 ~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nLrellq 109 (114)
T KOG3501|consen 43 LEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNLRELLQ 109 (114)
T ss_pred HHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777788776654 567777888889999998888888888888888877654
No 260
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=40.45 E-value=3.3e+02 Score=30.43 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy1888 305 AEKNLRILIQENENLKNQL 323 (386)
Q Consensus 305 a~~~i~~lq~e~~~l~~e~ 323 (386)
.+..+..|+.||+.|+..+
T Consensus 564 k~~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 564 KKSTLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666544
No 261
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=40.43 E-value=83 Score=27.45 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q psy1888 308 NLRILIQENENLKNQLANSSQ 328 (386)
Q Consensus 308 ~i~~lq~e~~~l~~e~~~~~~ 328 (386)
.+.++-+||+.|+=||+..|+
T Consensus 30 ~l~~lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 30 HLGSLVEENTALRLENEKLRE 50 (114)
T ss_pred HHHHHHHhhHHHHhhHHHHHH
Confidence 344445555555545544443
No 262
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=40.06 E-value=98 Score=28.10 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=32.9
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
.+..+..|+.|++.+++.-.++.+.|+....++..++++++++.+
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777788888777777777777777777777777654
No 263
>KOG2129|consensus
Probab=40.03 E-value=1.1e+02 Score=32.53 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1888 348 MKLLERDVHQKQDTIIELRRQ 368 (386)
Q Consensus 348 ~kllekd~~ekqdt~~~lr~q 368 (386)
++-||.+.--||-|+..||..
T Consensus 167 i~Klen~t~~kq~~leQLRre 187 (552)
T KOG2129|consen 167 IRKLENKTLLKQNTLEQLRRE 187 (552)
T ss_pred HHHhhhhhHHhhhhHHHHHHH
Confidence 466788888999999999874
No 264
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.81 E-value=3e+02 Score=30.63 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 299 REDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIK 373 (386)
Q Consensus 299 ~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k 373 (386)
..+.+.|+.+...|+.++..++++..... .-+....-|+.+..-+++....|-+++++.+
T Consensus 344 ~~~~~~a~~~~~~L~~~l~~~~~~~~~~~---------------~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 344 LMQADAAQARESQLVSDVNQLKAASAQAG---------------EQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc---------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666554332211 1123344566666666666666666666654
No 265
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=39.73 E-value=99 Score=25.84 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=30.2
Q ss_pred HHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 275 RHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 275 r~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
-++--++..++.+++.|.++|+.++-|-++| +.|-+|.++|+.|.
T Consensus 19 ~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~-----~~qvkn~~vrqkne 63 (87)
T PF10883_consen 19 AYLWWKVKKAKKQNAKLQKENEQLKTEKAVA-----ETQVKNAKVRQKNE 63 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhH
Confidence 3445566777778888888888887776654 44555666665555
No 266
>KOG4552|consensus
Probab=39.66 E-value=3.2e+02 Score=26.66 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHh
Q psy1888 341 KAEMEVAMKLLERDVHQKQDT-IIELRRQLEDIKMI 375 (386)
Q Consensus 341 k~e~e~a~kllekd~~ekqdt-~~~lr~ql~~~k~i 375 (386)
.++.|-+|..||+.+ ||+|. |..|.++|.+-..|
T Consensus 69 q~k~e~~m~~Lea~V-EkrD~~IQqLqk~LK~aE~i 103 (272)
T KOG4552|consen 69 QQKREQLMRTLEAHV-EKRDEVIQQLQKNLKSAEVI 103 (272)
T ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHH
Confidence 456777899999995 56664 66788888776544
No 267
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=39.51 E-value=4.4e+02 Score=27.03 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=20.6
Q ss_pred HHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 286 TQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 286 ~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
.-+......|..+++|+..-+..+.++|.++..||+.++
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la 110 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLA 110 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 344445555555555555555555555555555555444
No 268
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=39.50 E-value=4.2e+02 Score=26.75 Aligned_cols=96 Identities=19% Similarity=0.235 Sum_probs=59.3
Q ss_pred hhHHHHHhhh----HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHH-------HHHHHHHHHHHHHHHhhhcc
Q psy1888 259 NMSLVLDQKN----YIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEK-------NLRILIQENENLKNQLANSS 327 (386)
Q Consensus 259 ~~~~~ldQK~----ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~-------~i~~lq~e~~~l~~e~~~~~ 327 (386)
.+..+.+|-. +++.+.++.+-.+.-+.+|++.....-....+....-+. .+..+.++-..|+.++..-.
T Consensus 143 KlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~ 222 (309)
T PF09728_consen 143 KLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYS 222 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788876 778888888888877788887766654444444333333 66666667777776665311
Q ss_pred cc-------ccchhhhhhcchHHHHH---HHHHHHHH
Q psy1888 328 QH-------TSNLSVHEVGLKAEMEV---AMKLLERD 354 (386)
Q Consensus 328 ~~-------~~~el~~q~~~k~e~e~---a~kllekd 354 (386)
.+ +.|==++=.+.|.|||- .||-|||+
T Consensus 223 ~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE 259 (309)
T PF09728_consen 223 EKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKE 259 (309)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111223357777776 47888886
No 269
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=39.37 E-value=2.4e+02 Score=23.95 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 344 MEVAMKLLERDVHQKQDTIIELRRQL 369 (386)
Q Consensus 344 ~e~a~kllekd~~ekqdt~~~lr~ql 369 (386)
++..++-|++++.++++.+..+++.|
T Consensus 98 l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 98 LEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555444444
No 270
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.19 E-value=2.8e+02 Score=25.94 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1888 349 KLLERDVHQKQDTIIELRRQLE 370 (386)
Q Consensus 349 kllekd~~ekqdt~~~lr~ql~ 370 (386)
+.+=..+.-=-|.|-.|+.=+.
T Consensus 145 ~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 145 KIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333444455555544443
No 271
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=39.06 E-value=4.2e+02 Score=26.71 Aligned_cols=18 Identities=39% Similarity=0.401 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1888 354 DVHQKQDTIIELRRQLED 371 (386)
Q Consensus 354 d~~ekqdt~~~lr~ql~~ 371 (386)
.+..=.++-..||.||.-
T Consensus 203 ~~~~~~~~E~~Lr~QL~~ 220 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNL 220 (309)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455666678877753
No 272
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=38.82 E-value=5.2e+02 Score=27.97 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 301 DLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEV--AMKLLERDVHQKQDTIIELRRQLEDIK 373 (386)
Q Consensus 301 el~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~--a~kllekd~~ekqdt~~~lr~ql~~~k 373 (386)
+|+.-...+...+++++.++++......+...+||.-.+|..|=-. =|+.+|.+. ++|.-.-+|+.-++.|
T Consensus 105 ~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~--~~~~~~~~~~~~~~~~ 177 (514)
T TIGR03319 105 NLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEA--RHEAAKLIKEIEEEAK 177 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3444444555555555555555554445555567766666665211 134444442 3344444454444444
No 273
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=38.56 E-value=2.3e+02 Score=23.52 Aligned_cols=54 Identities=20% Similarity=0.139 Sum_probs=30.2
Q ss_pred HHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy1888 274 NRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSS 327 (386)
Q Consensus 274 nr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~ 327 (386)
+...-..++.++.++..+..+-++-..+--+|....-.+..|+..|+..+..++
T Consensus 19 ~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~ 72 (96)
T PF08647_consen 19 ADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS 72 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 333444555566666666666555555555556666666666666655444333
No 274
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=38.32 E-value=58 Score=27.72 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=24.3
Q ss_pred HHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHH
Q psy1888 275 RHLNATVGNLQTQVESLTTTNALMREDLSIAEK 307 (386)
Q Consensus 275 r~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~ 307 (386)
++++.++..++++++.++.+|..+++|++.-++
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 446777777888888888888888777776554
No 275
>PRK00736 hypothetical protein; Provisional
Probab=38.32 E-value=94 Score=24.47 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=24.9
Q ss_pred HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 278 NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQL 323 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~ 323 (386)
+..+.+|..|+.-.+.+-..+-+.+..-...|..|+.++..|.+..
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666655555555554445544555555565555554433
No 276
>KOG0979|consensus
Probab=37.96 E-value=6.4e+02 Score=29.88 Aligned_cols=63 Identities=24% Similarity=0.352 Sum_probs=49.5
Q ss_pred HHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 262 LVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 262 ~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
..-++.+..||.-..+.+++.+++..+..++.+-++...+++.-.+.+-.+..|.+.+.++..
T Consensus 626 ~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~ 688 (1072)
T KOG0979|consen 626 VLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELK 688 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345677888888888888888888888888888888888888777777777777777766444
No 277
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.74 E-value=2e+02 Score=22.49 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=32.5
Q ss_pred HHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 264 LDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 264 ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
-+....-|||++ ..+..-.+..++++.++.|..+..+++. |..+++.++
T Consensus 11 rakQ~~~eEL~k-vk~~n~~~e~kLqeaE~rn~eL~~ei~~-------L~~e~ee~r 59 (61)
T PF08826_consen 11 RAKQAIQEELTK-VKSANLAFESKLQEAEKRNRELEQEIER-------LKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhh
Confidence 344456677765 5555556788888888888888776664 555555444
No 278
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=37.36 E-value=3e+02 Score=24.47 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1888 302 LSIAEKNLRILIQENENLK 320 (386)
Q Consensus 302 l~~a~~~i~~lq~e~~~l~ 320 (386)
+......+..|+.....++
T Consensus 57 ~~~~~~~~~~l~~~~~kl~ 75 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLK 75 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443
No 279
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=37.32 E-value=2.7e+02 Score=25.98 Aligned_cols=6 Identities=50% Similarity=0.805 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy1888 364 ELRRQL 369 (386)
Q Consensus 364 ~lr~ql 369 (386)
.|+.||
T Consensus 181 ql~~~l 186 (189)
T PF10211_consen 181 QLKAQL 186 (189)
T ss_pred HHHHHH
Confidence 333333
No 280
>PRK11519 tyrosine kinase; Provisional
Probab=37.16 E-value=5.2e+02 Score=28.92 Aligned_cols=53 Identities=2% Similarity=0.079 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHh--HHHHHHHHHHHHHHHHHHHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALM--REDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~--~eel~~a~~~i~~lq~e~~~l~ 320 (386)
.|+++....+..++...+.++.....+|... ..|....-..+.+++.++..++
T Consensus 270 ~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~ 324 (719)
T PRK11519 270 AFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELT 324 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455444444331 2333333334444555544443
No 281
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=37.14 E-value=3.1e+02 Score=24.68 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=29.3
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 280 TVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQL 323 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~ 323 (386)
++.+|=.||-.+.-...+.-|||-.|..-.-+|+.|+..|..|.
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~Ek 50 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEK 50 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34444444445554556667888888888888888888876543
No 282
>KOG0978|consensus
Probab=36.75 E-value=4e+02 Score=30.20 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=33.8
Q ss_pred HHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 263 VLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 263 ~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
+.+|-+.++-..++++-++..|+.....+.++-+...--++.-+..+.++....+.|+.+..
T Consensus 515 l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~e 576 (698)
T KOG0978|consen 515 LKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELE 576 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555555666666666666666665444
No 283
>KOG0249|consensus
Probab=36.59 E-value=2.8e+02 Score=31.62 Aligned_cols=35 Identities=34% Similarity=0.512 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhH
Q psy1888 340 LKAEMEVAMKLLERDVHQK---QDTIIELRRQLEDIKM 374 (386)
Q Consensus 340 ~k~e~e~a~kllekd~~ek---qdt~~~lr~ql~~~k~ 374 (386)
+-+|.+-.-|-|+.--|+| +-.+..||++++.++.
T Consensus 221 L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 221 LEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444444444333333 3456789998888883
No 284
>KOG1962|consensus
Probab=36.42 E-value=1e+02 Score=29.85 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q psy1888 269 YIEELNRHL 277 (386)
Q Consensus 269 ylEElnr~l 277 (386)
|+.++.+.+
T Consensus 119 ll~~l~~l~ 127 (216)
T KOG1962|consen 119 LLRELATLR 127 (216)
T ss_pred HHHHHHHHH
Confidence 444444443
No 285
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=36.26 E-value=3.1e+02 Score=25.60 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhH
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNA 296 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~ 296 (386)
+++-+..|+.++.++..+.+.+++.+.
T Consensus 132 L~~e~~~L~~~~~~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 132 LEEEKEELEKQVQELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555443
No 286
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=36.21 E-value=12 Score=41.59 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQ 322 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e 322 (386)
|+..++.....+.++..+...++..|..|+.+++.+.+.
T Consensus 486 L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~ 524 (713)
T PF05622_consen 486 LQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKS 524 (713)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444445555555555555555443
No 287
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=36.10 E-value=6e+02 Score=27.63 Aligned_cols=22 Identities=14% Similarity=0.415 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1888 347 AMKLLERDVHQKQDTIIELRRQ 368 (386)
Q Consensus 347 a~kllekd~~ekqdt~~~lr~q 368 (386)
.+.-+|+..-+-.+.+.+||+.
T Consensus 387 ~l~~ie~~q~~~~~~l~~L~~d 408 (560)
T PF06160_consen 387 QLEEIEEEQEEINESLQSLRKD 408 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555443
No 288
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=36.09 E-value=92 Score=24.56 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=23.4
Q ss_pred HHHHHHhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 274 NRHLNATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 274 nr~l~~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
.|.+..++..++++++.++.+|..++.|.+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888888888877765
No 289
>PRK02119 hypothetical protein; Provisional
Probab=36.03 E-value=1e+02 Score=24.62 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDL 302 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel 302 (386)
.|.|.....|+..|...|..++.++..-..+.+.|
T Consensus 19 a~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 19 AFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666665555544443
No 290
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=35.93 E-value=3.2e+02 Score=24.40 Aligned_cols=15 Identities=13% Similarity=0.426 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhHHH
Q psy1888 269 YIEELNRHLNATVGN 283 (386)
Q Consensus 269 ylEElnr~l~~~~~~ 283 (386)
+++++.......+.+
T Consensus 36 ~l~~R~~~I~~~l~~ 50 (164)
T PRK14473 36 LLNERTRRIEESLRD 50 (164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 291
>KOG0577|consensus
Probab=35.88 E-value=5.7e+02 Score=29.12 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhh
Q psy1888 348 MKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQ 384 (386)
Q Consensus 348 ~kllekd~~ekqdt~~~lr~ql~~~k~in~~~~~~~~ 384 (386)
+|--|++++.|+-. .+|||=.++|.--+++-+.+|
T Consensus 718 nkRre~ELrrKHam--q~RQQPksLK~~elqIrkqfq 752 (948)
T KOG0577|consen 718 NKRREQELRRKHAM--QVRQQPKSLKSKELQIRKQFQ 752 (948)
T ss_pred HHHHHHHHHHHHHH--HHHhCchhhhHHHhhHHHHHH
Confidence 45567777777755 777777777776666655544
No 292
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=35.42 E-value=1.5e+02 Score=25.18 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=21.1
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQ 322 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e 322 (386)
....+...+..|..++..++.-+..+.+.+....+++.+
T Consensus 37 q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~ 75 (110)
T PF10828_consen 37 QAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQ 75 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666666665555555555555555443
No 293
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=35.21 E-value=1.6e+02 Score=24.02 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=24.7
Q ss_pred HHHHHHHHhHHH---HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHH
Q psy1888 272 ELNRHLNATVGN---LQTQVESLTTTNALMREDLSIAEKNLRILIQEN 316 (386)
Q Consensus 272 Elnr~l~~~~~~---l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~ 316 (386)
+.-+++.+|+.+ .+.+|-.|+.++.++|..-+. -|..|..|+
T Consensus 29 e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe---EI~rLr~eL 73 (79)
T PF08581_consen 29 EYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEE---EIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 333455555555 566777777777777766653 444444443
No 294
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=35.11 E-value=4.4e+02 Score=30.01 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1888 302 LSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 302 l~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~ 374 (386)
+..|-..+..|+.|+..|+.++.......+.+...--+.-+++..-+-.+||..++.+..+..|...|.....
T Consensus 361 y~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~ 433 (717)
T PF09730_consen 361 YKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSK 433 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3345555667777777777666543333322222111223444445566677777777777777776665544
No 295
>PRK00106 hypothetical protein; Provisional
Probab=34.48 E-value=5.5e+02 Score=28.13 Aligned_cols=72 Identities=11% Similarity=0.107 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1888 301 DLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEV--AMKLLERDVHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 301 el~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~--a~kllekd~~ekqdt~~~lr~ql~~~k~ 374 (386)
+|+.-...+...+++++..+++.....++..++||.--+|..|=-. =|+.+|.+. ++|.-.-+|+.-++.|.
T Consensus 126 eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~~--~~~~~~~i~~~e~~a~~ 199 (535)
T PRK00106 126 TLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENKL--THEIATRIREAEREVKD 199 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3444444555555566665555555555555667766677665211 134444442 34444455555555443
No 296
>PF13166 AAA_13: AAA domain
Probab=34.28 E-value=6.3e+02 Score=27.68 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 348 MKLLERDVHQKQDTIIELRRQLEDI 372 (386)
Q Consensus 348 ~kllekd~~ekqdt~~~lr~ql~~~ 372 (386)
++-++..+......|..|++++.++
T Consensus 433 ~~~~~~~~~~~~~~i~~l~~~~~~~ 457 (712)
T PF13166_consen 433 LKKAKEEIKKIEKEIKELEAQLKNT 457 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444555555566666666544
No 297
>KOG0946|consensus
Probab=34.25 E-value=3.6e+02 Score=31.25 Aligned_cols=21 Identities=10% Similarity=0.354 Sum_probs=13.2
Q ss_pred HHHHH-hCchhHHHhcccccCcc
Q psy1888 177 LQVLV-DHRDDILVEYFETDALL 198 (386)
Q Consensus 177 L~~Ll-~n~~~lL~~~Ye~~AlL 198 (386)
+-+++ .+| ..+..|-+..+.+
T Consensus 505 L~~WL~~cp-~AV~dFLs~~s~i 526 (970)
T KOG0946|consen 505 LITWLYGCP-DAVKDFLSESSII 526 (970)
T ss_pred HHHHHcCCc-HHHHHHHccccHH
Confidence 33444 566 6778887776654
No 298
>KOG2077|consensus
Probab=34.13 E-value=2.1e+02 Score=31.79 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=37.7
Q ss_pred HHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 281 VGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 281 ~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
-++|-+|+|+|.-++.-+.-||++++..-+.|++.+..+.+|++.
T Consensus 324 KNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~ 368 (832)
T KOG2077|consen 324 KNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKK 368 (832)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999999999999988888888777777777664
No 299
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=33.78 E-value=3.2e+02 Score=27.54 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=4.1
Q ss_pred HHHHHhHhHhh
Q psy1888 284 LQTQVESLTTT 294 (386)
Q Consensus 284 l~~~~~~l~~~ 294 (386)
+.+++..++.+
T Consensus 62 l~~eL~~LE~e 72 (314)
T PF04111_consen 62 LLQELEELEKE 72 (314)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 300
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=33.71 E-value=1.5e+02 Score=26.43 Aligned_cols=41 Identities=29% Similarity=0.341 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 306 EKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLED 371 (386)
Q Consensus 306 ~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~ 371 (386)
...|..+..||.-||+ |.--+..-..+..-||..||+||+.
T Consensus 84 dETI~~lk~EN~fLKe-------------------------Al~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 84 DETIEALKNENRFLKE-------------------------ALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred HHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3466677777777664 3333333344556688888888864
No 301
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=33.65 E-value=5.2e+02 Score=26.18 Aligned_cols=66 Identities=27% Similarity=0.347 Sum_probs=39.7
Q ss_pred hhHHHHHhhhHHHHHHHHH---HHhHHH-----------HHHHHhHhHhhhHHhHHH-------HHHHHHHHHHHHHHHH
Q psy1888 259 NMSLVLDQKNYIEELNRHL---NATVGN-----------LQTQVESLTTTNALMRED-------LSIAEKNLRILIQENE 317 (386)
Q Consensus 259 ~~~~~ldQK~ylEElnr~l---~~~~~~-----------l~~~~~~l~~~n~~~~ee-------l~~a~~~i~~lq~e~~ 317 (386)
+++.+-+.-.-+||-.|.- ++||-| |+.++++++++...+.++ ++.-|..+..|+.|+.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677767667777766532 344433 666666666666655444 4555556666666666
Q ss_pred HHHHHhh
Q psy1888 318 NLKNQLA 324 (386)
Q Consensus 318 ~l~~e~~ 324 (386)
.|+.++.
T Consensus 158 ~Lre~L~ 164 (302)
T PF09738_consen 158 ELREQLK 164 (302)
T ss_pred HHHHHHH
Confidence 6666554
No 302
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=33.52 E-value=5e+02 Score=26.50 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=21.8
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 280 TVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
|+.....++..|..+|+.+..+|+--+-+-..|..|.+..++-++
T Consensus 57 Ti~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLa 101 (305)
T PF14915_consen 57 TIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLA 101 (305)
T ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555555555554444444444444444444333
No 303
>PF14282 FlxA: FlxA-like protein
Probab=33.50 E-value=2.4e+02 Score=23.87 Aligned_cols=52 Identities=15% Similarity=0.297 Sum_probs=29.2
Q ss_pred HHHHHHHHHhHHHHHHHHhHhHhhhH---Hh-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 271 EELNRHLNATVGNLQTQVESLTTTNA---LM-REDLSIAEKNLRILIQENENLKNQ 322 (386)
Q Consensus 271 EElnr~l~~~~~~l~~~~~~l~~~n~---~~-~eel~~a~~~i~~lq~e~~~l~~e 322 (386)
......|+.++..|+.+|.++..... +. ++....-...|..|+.++.++..+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445577788888888888877322 11 223333344555555555555443
No 304
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=33.43 E-value=5.5e+02 Score=26.43 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 340 LKAEMEVAMKLLERDVHQKQDTIIEL 365 (386)
Q Consensus 340 ~k~e~e~a~kllekd~~ekqdt~~~l 365 (386)
.+.|-..+++-||++|.+.+..+...
T Consensus 62 ~~~e~~~~i~~L~~~Ik~r~~~l~Dm 87 (330)
T PF07851_consen 62 LSAEERELIEKLEEDIKERRCQLFDM 87 (330)
T ss_pred CChhHHHHHHHHHHHHHHHHhhHHHH
Confidence 33444445666666666655554433
No 305
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=33.36 E-value=2.3e+02 Score=23.32 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHH
Q psy1888 267 KNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQ 314 (386)
Q Consensus 267 K~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~ 314 (386)
|.-+-.-...|..++..|-.|++..+.+|.+++.|=+.-...|-.|-.
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445566777777777777777777777665555555555533
No 306
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=33.36 E-value=4.1e+02 Score=24.93 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=38.7
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhh
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSV 335 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~ 335 (386)
++.++.|..=.-.-...+++++...+++++.+...+....+.+..++..|.+++...+..+.+....++.+.+|+.
T Consensus 103 vk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~ 178 (216)
T cd07627 103 VRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELE 178 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555543333334455566666666666654432122344445555555555555555555554444444433
No 307
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=33.12 E-value=6.1e+02 Score=27.10 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 299 REDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 299 ~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
.+|++.|..+..+.+..+...+++.+
T Consensus 248 e~ev~~Ae~rl~~Ar~aL~~fRn~~g 273 (434)
T PRK15178 248 ENDVKSAQENLGAARLELLKIQHIQK 273 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44445555555555555555554433
No 308
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=32.96 E-value=3.5e+02 Score=25.57 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=47.5
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENL 319 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l 319 (386)
-+..|..|...++....++.++..+...++.++..-..|+.++..++..-..|.......
T Consensus 87 Ar~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A 146 (219)
T TIGR02977 87 ARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAA 146 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999998888888887777665554444333
No 309
>KOG4438|consensus
Probab=32.92 E-value=4.1e+02 Score=28.40 Aligned_cols=113 Identities=17% Similarity=0.150 Sum_probs=54.8
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-------hccc----
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA-------NSSQ---- 328 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~-------~~~~---- 328 (386)
+...+.|.+-+-++-..+++++.++..+++.....+-.-.+++..-...|.+|++.+-....... ..++
T Consensus 133 ~~~~~~q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s 212 (446)
T KOG4438|consen 133 YRPFIQQLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTS 212 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Confidence 44445555555566666666666666666666555544444444333445544444333322222 1111
Q ss_pred -c--ccchhhhhh--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 329 -H--TSNLSVHEV--------GLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDI 372 (386)
Q Consensus 329 -~--~~~el~~q~--------~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~ 372 (386)
+ .-+.|-++| ++|+.+=-.+.=|-.-+.|+-|+|...+.++.++
T Consensus 213 ~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l 267 (446)
T KOG4438|consen 213 EKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVEL 267 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112233333 2333332233222233577778888877777764
No 310
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=32.81 E-value=2.5e+02 Score=22.24 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=37.2
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENL 319 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l 319 (386)
.+...|...-..|.+++..+..++..+++..+.|+.+|..+-.-+-.+
T Consensus 14 ~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 14 EYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344555666666888889999999999999999999998887655443
No 311
>PRK15396 murein lipoprotein; Provisional
Probab=32.78 E-value=1e+02 Score=25.15 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=13.3
Q ss_pred HHHHhHHHHHHHHhHhHhhhHHhHH
Q psy1888 276 HLNATVGNLQTQVESLTTTNALMRE 300 (386)
Q Consensus 276 ~l~~~~~~l~~~~~~l~~~n~~~~e 300 (386)
+|+++|..|.++++.+...-..++-
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~ 53 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRS 53 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666555555444433
No 312
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=32.52 E-value=4.3e+02 Score=24.90 Aligned_cols=15 Identities=7% Similarity=0.386 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhHHH
Q psy1888 269 YIEELNRHLNATVGN 283 (386)
Q Consensus 269 ylEElnr~l~~~~~~ 283 (386)
+++++.......+.+
T Consensus 76 ~L~~R~~~I~~~L~~ 90 (205)
T PRK06231 76 FLNKRKELIEAEINQ 90 (205)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334443333333333
No 313
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=32.44 E-value=2.5e+02 Score=26.93 Aligned_cols=9 Identities=56% Similarity=0.892 Sum_probs=5.6
Q ss_pred HHHHHhhcC
Q psy1888 378 EMYKKLQAL 386 (386)
Q Consensus 378 ~~~~~~~~~ 386 (386)
+||++.|.|
T Consensus 188 qMy~rn~~L 196 (202)
T PF06818_consen 188 QMYQRNQAL 196 (202)
T ss_pred HHHHHHHHH
Confidence 677666643
No 314
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=32.41 E-value=1e+03 Score=29.07 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 348 MKLLERDVHQKQDTIIELRRQLEDIK 373 (386)
Q Consensus 348 ~kllekd~~ekqdt~~~lr~ql~~~k 373 (386)
++-+.+++..|...+..-++++++.+
T Consensus 342 l~~~~~~a~~~~~~~~~a~~~~e~~~ 367 (1353)
T TIGR02680 342 AEALQAAAADARQAIREAESRLEEER 367 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555554443
No 315
>PRK02793 phi X174 lysis protein; Provisional
Probab=32.30 E-value=1.3e+02 Score=23.84 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=27.7
Q ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 261 SLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 261 ~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
..+=-+-.|.|...-.|+..|...|..|+.++..-..+.+.|.
T Consensus 11 ~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 11 AELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344577777777777777777777777766666655544
No 316
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=32.24 E-value=75 Score=25.95 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=19.8
Q ss_pred HhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 288 VESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 288 ~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
++++.++|..+|++|.. |.+|+++++.+..
T Consensus 2 i~ei~eEn~~Lk~eiqk-------le~ELq~~~~~~q 31 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQK-------LEAELQQNKREFQ 31 (76)
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhh
Confidence 56778888888777663 4456666665533
No 317
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=32.19 E-value=64 Score=29.95 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=17.5
Q ss_pred HHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 281 VGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQL 323 (386)
Q Consensus 281 ~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~ 323 (386)
|.++.+|+...=+.|..|.+||.. -..|+++.++||.|.
T Consensus 2 LeD~EsklN~AIERnalLE~ELdE----KE~L~~~~QRLkDE~ 40 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDE----KENLREEVQRLKDEL 40 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCH-------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 345555555555666666666642 234555555555443
No 318
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=32.07 E-value=6.4e+02 Score=28.21 Aligned_cols=52 Identities=2% Similarity=0.081 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHh--HHHHHHHHHHHHHHHHHHHHHH
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALM--REDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~--~eel~~a~~~i~~lq~e~~~l~ 320 (386)
|+++....++.++...+.+++...++|... ..|....-..+.+|+.++..++
T Consensus 271 fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~ 324 (726)
T PRK09841 271 FLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELT 324 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444443211 1222333344455555554444
No 319
>KOG2391|consensus
Probab=31.96 E-value=2e+02 Score=29.82 Aligned_cols=54 Identities=22% Similarity=0.176 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
.|.|-+.+.++..++++++..+++..+...+++-...-+..+..|.+|+..|+.
T Consensus 214 a~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ 267 (365)
T KOG2391|consen 214 AVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQK 267 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 467777888888888888888888888555544333333344444445544443
No 320
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=31.95 E-value=5.7e+02 Score=29.16 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=4.5
Q ss_pred Cccccchhhh
Q psy1888 231 QGVIDFSLYL 240 (386)
Q Consensus 231 ~~vId~s~yl 240 (386)
+.+.++++.+
T Consensus 460 ~~v~~~~~~~ 469 (782)
T PRK00409 460 EGVENASVEF 469 (782)
T ss_pred CCeEEEEEEE
Confidence 4444544433
No 321
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=31.88 E-value=4.4e+02 Score=24.83 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhh
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTT 294 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~ 294 (386)
-.++..+.-+..+.+.+.++.....+
T Consensus 90 ~Ae~~~~eA~~~l~e~e~~L~~A~~e 115 (205)
T PRK06231 90 QANELKQQAQQLLENAKQRHENALAQ 115 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555444443
No 322
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=31.83 E-value=5.4e+02 Score=28.33 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy1888 341 KAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMI 375 (386)
Q Consensus 341 k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~i 375 (386)
..+...++.-|++++.+.+.+...|+++-+....|
T Consensus 126 ~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l~~i 160 (779)
T PRK11091 126 EEARQEAFEQLKNEIKEREETQIELEQQSSLLRSF 160 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566778888888888877777776655543
No 323
>PRK04406 hypothetical protein; Provisional
Probab=31.83 E-value=1.3e+02 Score=24.21 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDL 302 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel 302 (386)
.|.|...-.|+..|...|..|+.++.+-..+.+.|
T Consensus 21 AfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 21 AFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556555666655555544443333
No 324
>PRK01156 chromosome segregation protein; Provisional
Probab=31.77 E-value=8.1e+02 Score=27.84 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=18.6
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
.+..+.++..++..+...-..+..++..++..+.++..+...++
T Consensus 195 ~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~ 238 (895)
T PRK01156 195 SNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLK 238 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443334444444443333
No 325
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=31.43 E-value=1.5e+02 Score=30.91 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=18.7
Q ss_pred HHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 285 QTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 285 ~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
..+++.++..+..+..+...++..+..+++|+..++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444555556677766665
No 326
>KOG4466|consensus
Probab=30.36 E-value=5.9e+02 Score=25.79 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHhHhHh
Q psy1888 267 KNYIEELNRHLNATVGNLQTQVESLTT 293 (386)
Q Consensus 267 K~ylEElnr~l~~~~~~l~~~~~~l~~ 293 (386)
++|.|..-..-...+++||++++++..
T Consensus 30 ~~f~elkeq~yk~kLa~Lq~~Leel~~ 56 (291)
T KOG4466|consen 30 KQFSELKEQMYKDKLAQLQAQLEELGQ 56 (291)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356666666667788888888888764
No 327
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.26 E-value=4.6e+02 Score=24.49 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy1888 308 NLRILIQENENLKNQLA 324 (386)
Q Consensus 308 ~i~~lq~e~~~l~~e~~ 324 (386)
.+.+|+.++..|+.|+.
T Consensus 111 ~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 111 ELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 328
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.20 E-value=2.1e+02 Score=30.82 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=23.7
Q ss_pred cchhHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHH
Q psy1888 257 EDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMRED 301 (386)
Q Consensus 257 ~~~~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~ee 301 (386)
.++++.+..|- |.++..+..+..+=+.+.++|+.+++.
T Consensus 58 ~DTlrTlva~~-------k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 58 ADTLRTLVAEV-------KELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred cchHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677777653 345555666666666777777777554
No 329
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=30.14 E-value=3.3e+02 Score=25.90 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=7.5
Q ss_pred chHHHHHHHHHHHHH
Q psy1888 340 LKAEMEVAMKLLERD 354 (386)
Q Consensus 340 ~k~e~e~a~kllekd 354 (386)
.|..+|.-|+-||++
T Consensus 79 ~k~~qe~eI~~Le~e 93 (206)
T PF14988_consen 79 LKEQQEREIQTLEEE 93 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555554
No 330
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=30.13 E-value=3.8e+02 Score=26.10 Aligned_cols=62 Identities=19% Similarity=0.226 Sum_probs=35.2
Q ss_pred HHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHH----------------HHHHHHHHHHHHHhhhcc
Q psy1888 264 LDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNL----------------RILIQENENLKNQLANSS 327 (386)
Q Consensus 264 ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i----------------~~lq~e~~~l~~e~~~~~ 327 (386)
.-+.+|++-|++.++..+.+.+..-..++.. .=++.+|+.++ ..+++|++....++..++
T Consensus 103 ~i~~~fl~pL~~~le~dik~i~k~RKkLe~~----RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~~ 178 (244)
T cd07595 103 NVEEDVLSPLQNILEVEIPNIQKQKKRLSKL----VLDMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQCR 178 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 3457899999999987776644333333322 22233333333 356677766666555554
Q ss_pred cc
Q psy1888 328 QH 329 (386)
Q Consensus 328 ~~ 329 (386)
+.
T Consensus 179 e~ 180 (244)
T cd07595 179 DA 180 (244)
T ss_pred HH
Confidence 44
No 331
>KOG0933|consensus
Probab=29.92 E-value=5.5e+02 Score=30.53 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=12.5
Q ss_pred ChHHHHHHHHHHHHHh
Q psy1888 95 HMPLQHFFIVLEHVLR 110 (386)
Q Consensus 95 ~~~L~~LC~~LE~iL~ 110 (386)
+....+||.-+++++.
T Consensus 485 ~~~~~~lk~~~~~l~a 500 (1174)
T KOG0933|consen 485 HEDIGRLKDELDRLLA 500 (1174)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3457789999998877
No 332
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=29.66 E-value=77 Score=24.72 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=8.8
Q ss_pred HHhHHHHHHHHhHhHhhhHHh
Q psy1888 278 NATVGNLQTQVESLTTTNALM 298 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~ 298 (386)
..++.+|+.|...|+.+|+.+
T Consensus 20 K~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 333
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=29.31 E-value=5.4e+02 Score=25.00 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=8.3
Q ss_pred HhhhHHhHHHHHHHHHHHHHHHH
Q psy1888 292 TTTNALMREDLSIAEKNLRILIQ 314 (386)
Q Consensus 292 ~~~n~~~~eel~~a~~~i~~lq~ 314 (386)
+..+.+...+|..+...+..|.+
T Consensus 18 eee~~~a~~~L~e~e~~a~~Lee 40 (246)
T PF00769_consen 18 EEEMRRAQEALEESEETAEELEE 40 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 334
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=29.24 E-value=6.4e+02 Score=25.84 Aligned_cols=26 Identities=8% Similarity=0.175 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhh
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTT 294 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~ 294 (386)
|+++-...++.++...+.++......
T Consensus 175 fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 175 WFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333344444444444443333
No 335
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=29.24 E-value=4.1e+02 Score=23.59 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=10.5
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhh
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTT 294 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~ 294 (386)
.+--.+.++=..|.+||+.+...
T Consensus 54 ~vs~~l~~tKkhLsqRId~vd~k 76 (126)
T PF07889_consen 54 QVSESLSSTKKHLSQRIDRVDDK 76 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444455555555433
No 336
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=29.11 E-value=6.7e+02 Score=28.54 Aligned_cols=87 Identities=20% Similarity=0.228 Sum_probs=44.1
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cccccchhhhhh----------cchHH
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANS---SQHTSNLSVHEV----------GLKAE 343 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~---~~~~~~el~~q~----------~~k~e 343 (386)
|.++...|+.++.+++.....++.+|+.|...-..|++++-+.+.++..- -..+.+..--|+ ..|.+
T Consensus 167 L~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~ 246 (739)
T PF07111_consen 167 LTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREE 246 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHH
Confidence 44455556666666666666666666655555555555544444433310 011111221122 35567
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1888 344 MEVAMKLLERDVHQKQDTII 363 (386)
Q Consensus 344 ~e~a~kllekd~~ekqdt~~ 363 (386)
+--.|+-|++|-.-=|-|+.
T Consensus 247 L~~tVq~L~edR~~L~~T~E 266 (739)
T PF07111_consen 247 LLETVQHLQEDRDALQATAE 266 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77788888887443333433
No 337
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=29.10 E-value=3.1e+02 Score=23.65 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=15.8
Q ss_pred HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy1888 278 NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENE 317 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~ 317 (386)
++.+..+++.+|+|.=-|..| ..+|..||+|+.
T Consensus 39 e~~LRk~eqE~dSL~FrN~QL-------~kRV~~LQ~El~ 71 (102)
T PF10205_consen 39 EQALRKLEQENDSLTFRNQQL-------TKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 344444555555555554444 224445555554
No 338
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=28.89 E-value=19 Score=41.19 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
+..+-.+|.=.|-.++.+++++.+++.+++..+..-..+.....
T Consensus 168 l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~ 211 (859)
T PF01576_consen 168 LDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKA 211 (859)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566667777888888888888888777766555443333
No 339
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=28.88 E-value=3.1e+02 Score=22.08 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1888 341 KAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 341 k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~ 374 (386)
..+++--++-++++|..=.+.+..+..++.+.++
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555566666666554
No 340
>PRK04325 hypothetical protein; Provisional
Probab=28.86 E-value=1.6e+02 Score=23.54 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDL 302 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel 302 (386)
.|.|...-.|+..|...|..|+.++.+-..+.+.|
T Consensus 19 AfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 19 AFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666655544444433
No 341
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.73 E-value=52 Score=28.55 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=45.7
Q ss_pred hhhhhccCCCCCCccchhHHHHHHHHhhhhHHHHHHHHHhCc-hhHHHhcccccCccCCcc
Q psy1888 143 ITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHR-DDILVEYFETDALLMSDE 202 (386)
Q Consensus 143 ~i~~I~~L~~I~T~~GRgRAWIRlAL~eK~Ls~yL~~Ll~n~-~~lL~~~Ye~~AlL~d~E 202 (386)
+++.+...+.-+.|.=--|.||.+|=+..-=.+.++.|.++. ...+..||+.||-+....
T Consensus 52 ~~~~f~~~~~Y~nD~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~ 112 (126)
T PF08311_consen 52 CIRKFKDDERYKNDERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKR 112 (126)
T ss_dssp HHHHHTTSGGGTT-HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHT
T ss_pred HHHHHhhhHhhcCCHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHc
Confidence 445666667788999999999999999888888888887532 235688999999876554
No 342
>KOG4074|consensus
Probab=28.62 E-value=3e+02 Score=28.30 Aligned_cols=54 Identities=35% Similarity=0.379 Sum_probs=41.5
Q ss_pred HHHHHHHHhHHH-HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 272 ELNRHLNATVGN-LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 272 Elnr~l~~~~~~-l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
||-|.|=+.|++ ||.+++.|.+..-.+..++.+--++...+-||.+.|+=++..
T Consensus 162 ELK~LlVASvgddLQ~~ve~LtedK~qLa~~~~~~~~nl~~~~Eq~erl~iqcdV 216 (383)
T KOG4074|consen 162 ELKRLLVASVGDDLQGQVEALTEDKVQLAHRVDEYMGNLMVEDEQSERLRIQCDV 216 (383)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhHHHH
Confidence 344555577776 999999999997777777777677788888888888876664
No 343
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=28.18 E-value=5.4e+02 Score=24.68 Aligned_cols=89 Identities=10% Similarity=0.193 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHH----HHHHHHHHhhh-ccccccchhh-hhhcc
Q psy1888 267 KNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQ----ENENLKNQLAN-SSQHTSNLSV-HEVGL 340 (386)
Q Consensus 267 K~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~----e~~~l~~e~~~-~~~~~~~el~-~q~~~ 340 (386)
.++++++.....+.+.+....-...+.....-+++|+.|+....++.+ +-...+++.-. .+.+.++..+ .+-.+
T Consensus 31 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~i 110 (246)
T TIGR03321 31 LDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEAL 110 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHH
Q psy1888 341 KAEMEVAMKLLERDV 355 (386)
Q Consensus 341 k~e~e~a~kllekd~ 355 (386)
..|.+.|++-|.+++
T Consensus 111 e~E~~~a~~~l~~ei 125 (246)
T TIGR03321 111 RREQAALSDELRRRT 125 (246)
T ss_pred HHHHHHHHHHHHHHH
No 344
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=28.15 E-value=1.9e+02 Score=22.01 Aligned_cols=22 Identities=36% Similarity=0.375 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy1888 304 IAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 304 ~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
.|+..|.+|..||..|+.++..
T Consensus 26 ~a~~rl~~l~~EN~~Lr~eL~~ 47 (52)
T PF12808_consen 26 AARKRLSKLEGENRLLRAELER 47 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999998877654
No 345
>PRK12704 phosphodiesterase; Provisional
Probab=28.07 E-value=8e+02 Score=26.61 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 301 DLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEV--AMKLLERDVHQKQDTIIELRRQLEDIK 373 (386)
Q Consensus 301 el~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~--a~kllekd~~ekqdt~~~lr~ql~~~k 373 (386)
+|..-...+....++++..+++......+...+||.-.+|..|=-. =|+.+|.+ -++|.-.-+|+.-++.|
T Consensus 111 eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~--~~~~~~~~~~~~~~~~~ 183 (520)
T PRK12704 111 ELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEE--ARHEAAVLIKEIEEEAK 183 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3444445555666666666666555555556667777777666211 13444444 23444444555444444
No 346
>KOG0018|consensus
Probab=27.95 E-value=6.5e+02 Score=30.02 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=27.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1888 339 GLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 339 ~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~ 374 (386)
.-...++.-.-.++....+..+.|+..+.||.|.++
T Consensus 444 ~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~ 479 (1141)
T KOG0018|consen 444 HDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASA 479 (1141)
T ss_pred hcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 344455556667777888999999999999988765
No 347
>KOG0240|consensus
Probab=27.91 E-value=2.5e+02 Score=31.04 Aligned_cols=7 Identities=29% Similarity=0.880 Sum_probs=4.5
Q ss_pred ccceeee
Q psy1888 17 CNFRVSV 23 (386)
Q Consensus 17 ~~~~~~~ 23 (386)
|+++|.+
T Consensus 7 ~~IkV~c 13 (607)
T KOG0240|consen 7 CSIKVVC 13 (607)
T ss_pred CceEEEE
Confidence 6666655
No 348
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=27.90 E-value=4.8e+02 Score=24.80 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHh
Q psy1888 267 KNYIEELNRHLNATVGNLQTQVESLTTTNALM 298 (386)
Q Consensus 267 K~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~ 298 (386)
..++|.....++..+..+..+++.+.......
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~ 169 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVNRERKRR 169 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666554333
No 349
>KOG0972|consensus
Probab=27.87 E-value=2.9e+02 Score=28.28 Aligned_cols=7 Identities=71% Similarity=0.790 Sum_probs=4.0
Q ss_pred chHHHHH
Q psy1888 340 LKAEMEV 346 (386)
Q Consensus 340 ~k~e~e~ 346 (386)
.|+|||.
T Consensus 320 ~KqemEe 326 (384)
T KOG0972|consen 320 LKQEMEE 326 (384)
T ss_pred HHHHHHH
Confidence 5666654
No 350
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=27.77 E-value=7.9e+02 Score=28.00 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=33.7
Q ss_pred HHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy1888 283 NLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSN 332 (386)
Q Consensus 283 ~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~ 332 (386)
.|...+....++-+.+.++|++|.....+..++-..++.|+.......++
T Consensus 525 qLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~ 574 (739)
T PF07111_consen 525 QLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYER 574 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666777788888888777777777777777654433333
No 351
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=27.73 E-value=4.9e+02 Score=24.02 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=23.2
Q ss_pred HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1888 278 NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANS 326 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~ 326 (386)
+..+...+++++.+..++..-.+.+..|++.|.+++...+..+.+....
T Consensus 141 ~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~i 189 (236)
T PF09325_consen 141 EKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEI 189 (236)
T ss_pred HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555554433223444555555555555555555444433
No 352
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=27.21 E-value=5.5e+02 Score=24.41 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=19.5
Q ss_pred HHHHHhHHHHHHHHhHhHhhhHHhHHHHHH
Q psy1888 275 RHLNATVGNLQTQVESLTTTNALMREDLSI 304 (386)
Q Consensus 275 r~l~~~~~~l~~~~~~l~~~n~~~~eel~~ 304 (386)
..-..+.+.|+.++-.-++....++.+|.+
T Consensus 43 s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~ 72 (206)
T PF14988_consen 43 SRYAKQTSELQDQLLQKEKEQAKLQQELQA 72 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456666777777777777777777664
No 353
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=27.08 E-value=3.6e+02 Score=29.67 Aligned_cols=80 Identities=15% Similarity=0.279 Sum_probs=39.1
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTII 363 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~ 363 (386)
.+.+++++...-....+.+++....-..||+.++.+...++....+ |+. .--.+.-|+||=-+=+|++.
T Consensus 352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~-------q~~----~~e~L~~LrkdEl~Are~l~ 420 (570)
T COG4477 352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDE-------QEK----VQEHLTSLRKDELEARENLE 420 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhh-------HHH----HHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444333322111 111 11245667777666677777
Q ss_pred HHHHHHHHHhH
Q psy1888 364 ELRRQLEDIKM 374 (386)
Q Consensus 364 ~lr~ql~~~k~ 374 (386)
.++.+|..+|-
T Consensus 421 ~~~~~l~eikR 431 (570)
T COG4477 421 RLKSKLHEIKR 431 (570)
T ss_pred HHHHHHHHHHH
Confidence 77777766653
No 354
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=27.01 E-value=7e+02 Score=27.38 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=43.0
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhh-cchHHHHHHH-H-------
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEV-GLKAEMEVAM-K------- 349 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~-~~k~e~e~a~-k------- 349 (386)
+.+.-||.+-..++.++..+.++|.--.+.|..|+..+..-++. |.+-+ ..+.|.+-+. +
T Consensus 337 ~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqt-----------L~~rL~e~~~e~~~~~r~~lekl~~ 405 (531)
T PF15450_consen 337 SELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQT-----------LNLRLSEAKNEWESDERKSLEKLDQ 405 (531)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555555566666666665555555555555444332222 22211 1222322222 2
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q psy1888 350 ---LLERDVHQKQDTIIELRRQLEDIKMINL 377 (386)
Q Consensus 350 ---llekd~~ekqdt~~~lr~ql~~~k~in~ 377 (386)
-.++.+.+-++.+.+|-+|+++|..=+.
T Consensus 406 ~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~ 436 (531)
T PF15450_consen 406 WQNEMEKHLKEVQEKVDSLPQQIEEVSDKCD 436 (531)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2233444555555588888888865443
No 355
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=26.96 E-value=6.5e+02 Score=25.16 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhH
Q psy1888 356 HQKQDTIIELRRQLEDIKMIN 376 (386)
Q Consensus 356 ~ekqdt~~~lr~ql~~~k~in 376 (386)
-+|-=.+.-|.+||++....-
T Consensus 242 ~~kfRNl~yLe~qle~~~~~e 262 (267)
T PF10234_consen 242 VEKFRNLDYLEHQLEEYNRRE 262 (267)
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 455666777888888766543
No 356
>KOG0999|consensus
Probab=26.90 E-value=9.3e+02 Score=26.96 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q psy1888 344 MEVAMKLLERDVHQKQDTIIELRRQLEDIKMINL 377 (386)
Q Consensus 344 ~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in~ 377 (386)
|+..+|-++..+..+|.-...+-+--.|.|.+|.
T Consensus 112 leneLKq~r~el~~~q~E~erl~~~~sd~~e~~~ 145 (772)
T KOG0999|consen 112 LENELKQLRQELTNVQEENERLEKVHSDLKESNA 145 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 4445566666666666555555555555555543
No 357
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=26.70 E-value=21 Score=38.32 Aligned_cols=91 Identities=10% Similarity=0.213 Sum_probs=0.0
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQK 358 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ek 358 (386)
..+..|+..|+.|..+-.=|=.-|....--|-..+.|++.-+.|+......+.+|--.--++-+.|..-+.=||..|.+.
T Consensus 435 ~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~~El~~W~~e~~~~~~~l~~e~~~t~~~~~pl~~~L~ele~~I~~~ 514 (539)
T PF10243_consen 435 KEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQKELEMWRSEYRQHAEALQEEQSITDEALEPLKAQLAELEQQIKDQ 514 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34455777777777665555444555555566677777777777666555555544333345555555668899999999
Q ss_pred HHHHHHHHHHH
Q psy1888 359 QDTIIELRRQL 369 (386)
Q Consensus 359 qdt~~~lr~ql 369 (386)
+|-|.++|.+.
T Consensus 515 ~~~i~~~ka~I 525 (539)
T PF10243_consen 515 QDKICAVKANI 525 (539)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 358
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=26.58 E-value=7.1e+02 Score=26.43 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhh
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTT 294 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~ 294 (386)
+-+||+-|.|...+..-...-..|+.+
T Consensus 281 tKveelar~Lr~~I~~VarENs~LqrQ 307 (442)
T PF06637_consen 281 TKVEELARSLRAGIERVARENSDLQRQ 307 (442)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHH
Confidence 457888888876665543333333333
No 359
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.27 E-value=3.3e+02 Score=26.67 Aligned_cols=39 Identities=13% Similarity=0.252 Sum_probs=21.4
Q ss_pred HHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1888 281 VGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENL 319 (386)
Q Consensus 281 ~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l 319 (386)
+.+||.+|+.++.+...|.-+++.....+..+++....+
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666555555555555555444433
No 360
>PRK11281 hypothetical protein; Provisional
Probab=26.05 E-value=8.8e+02 Score=29.10 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
+|..-..+++++.+.|..+..++++-.......+.|.+.+.+.++.+++++++...
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44433355566666666666666666666666777777777777777777766553
No 361
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=26.02 E-value=1.3e+02 Score=25.14 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=25.6
Q ss_pred HHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHH
Q psy1888 273 LNRHLNATVGNLQTQVESLTTTNALMREDLSI 304 (386)
Q Consensus 273 lnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~ 304 (386)
+...+..++..|..+++.++++|..+.++++.
T Consensus 74 l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 74 LAPYKKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888899999999999999888775
No 362
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.97 E-value=8.4e+02 Score=26.16 Aligned_cols=89 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHH-----------hHHHHHHHHhHhHhhhHHh-HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchh
Q psy1888 267 KNYIEELNRHLNA-----------TVGNLQTQVESLTTTNALM-REDLSIAEKNLRILIQENENLKNQLANSSQHTSNLS 334 (386)
Q Consensus 267 K~ylEElnr~l~~-----------~~~~l~~~~~~l~~~n~~~-~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el 334 (386)
++-++|.-+.... ++++++.++...+++-+.+ -++++-.. +.+|+|...+..
T Consensus 41 l~~~ee~e~~~~~~~A~~~~~~kkel~~~~~q~~~~k~~~~~~~~eqi~~~~---~~~q~e~~~~~~------------- 104 (438)
T COG4487 41 LNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFE---LALQDEIAKLEA------------- 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-------------
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q psy1888 335 VHEVGLKAEMEVAMKLLERDVHQKQDTIIE-LRRQLEDIK 373 (386)
Q Consensus 335 ~~q~~~k~e~e~a~kllekd~~ekqdt~~~-lr~ql~~~k 373 (386)
-...-.|-+-.|++||+...++++-+.. |.++++.++
T Consensus 105 --~~~~N~e~dke~~~le~~L~~~~~e~~~~lq~~~e~~~ 142 (438)
T COG4487 105 --LELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIE 142 (438)
T ss_pred --HHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 363
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=25.87 E-value=6.4e+02 Score=25.47 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=10.0
Q ss_pred HHHHhHHHHHHHHhHhHhhhHHhHHH
Q psy1888 276 HLNATVGNLQTQVESLTTTNALMRED 301 (386)
Q Consensus 276 ~l~~~~~~l~~~~~~l~~~n~~~~ee 301 (386)
.|+.++...+-.++.-.+....+.++
T Consensus 19 ~m~~~L~~~~~~L~~k~~e~e~ll~~ 44 (344)
T PF12777_consen 19 EMQEELEEKQPELEEKQKEAEELLEE 44 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444344443333333333333
No 364
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=25.85 E-value=6.1e+02 Score=24.48 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=31.1
Q ss_pred cchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 331 SNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQL 369 (386)
Q Consensus 331 ~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql 369 (386)
+.++-..-.--+|||.-+|-|+..|.||-=-|-.|+|+.
T Consensus 128 ~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs 166 (205)
T PF12240_consen 128 EEELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQRS 166 (205)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444556678999999999999999988888888765
No 365
>PF13864 Enkurin: Calmodulin-binding
Probab=25.84 E-value=3.8e+02 Score=22.13 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHH
Q psy1888 308 NLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVH 356 (386)
Q Consensus 308 ~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ 356 (386)
.+..|+...+.+..|+....-. ...--....|.+||.-|+-||+||.
T Consensus 45 lL~~Lk~~~~el~~ey~~lp~~--~DT~~~~~rK~~lE~~L~qlE~dI~ 91 (98)
T PF13864_consen 45 LLEGLKKNWDELNKEYQKLPFS--IDTLRKKRRKEELEKELKQLEKDIK 91 (98)
T ss_pred HHHHHHHHHHHHHHHHHhCCcc--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554432211 2233345688899999999999975
No 366
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=25.68 E-value=1.8e+02 Score=29.85 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=31.2
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
.+|.-||.+++++++.-..+..||+.++..+-=.||.+.-|++=+.
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLd 220 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLD 220 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566677777777777777777777777777777777776665443
No 367
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=25.50 E-value=5.7e+02 Score=24.04 Aligned_cols=61 Identities=11% Similarity=0.182 Sum_probs=32.5
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 294 TNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDI 372 (386)
Q Consensus 294 ~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~ 372 (386)
.+.++.+++..-...|.+||++...++. +|+++...+--|+.++..=.+.+...+.+-+++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~------------------~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKE------------------KKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445577777777666653 344444444555555555555555555554443
No 368
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=25.49 E-value=6.4e+02 Score=24.58 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=16.1
Q ss_pred HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHH
Q psy1888 278 NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQEN 316 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~ 316 (386)
++++..+++++..++.....+..++..++..+...+.++
T Consensus 86 ~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l 124 (334)
T TIGR00998 86 EANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKL 124 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333444444444444444333
No 369
>PRK10807 paraquat-inducible protein B; Provisional
Probab=25.40 E-value=8e+02 Score=26.78 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=11.1
Q ss_pred Hhhccccceeccccc
Q psy1888 208 GKLLSLNVIDCNLCV 222 (386)
Q Consensus 208 ~lL~GLn~IdF~l~l 222 (386)
++|-|...|++++.-
T Consensus 377 ~lLTG~lyV~Ld~~p 391 (547)
T PRK10807 377 NLLTGALYVDLDFYP 391 (547)
T ss_pred CcccccEEEEEecCC
Confidence 567788888887663
No 370
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=25.40 E-value=6.8e+02 Score=25.87 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 345 EVAMKLLERDVHQKQDTIIELRRQLEDIK 373 (386)
Q Consensus 345 e~a~kllekd~~ekqdt~~~lr~ql~~~k 373 (386)
.....+|+.+.-++|.++.+++-+++.-+
T Consensus 175 ~~~~~~l~~~~~~~~~~v~~a~a~~~~A~ 203 (352)
T COG1566 175 KQNLALLESEVSGAQAQVASAEAALDQAK 203 (352)
T ss_pred HHHHHHHhhhhccchhHHHHHHHHHHHHH
Confidence 34467889999999999999998886543
No 371
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=25.18 E-value=2.1e+02 Score=27.15 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=28.7
Q ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHH
Q psy1888 261 SLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENEN 318 (386)
Q Consensus 261 ~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~ 318 (386)
..+..|+.|+||+..-- + ..+ .++|..+...+.+++.+.-|...+..||...+.
T Consensus 115 ~~v~~~~~~v~~ml~~~-~-~~~--~k~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~ 168 (192)
T COG5374 115 IVVMRVMSIVEEMLEEN-A-KKG--GKIDKMEADSTDLKARLRKAQILLEGLQKNQEE 168 (192)
T ss_pred HHHHHHHHHHHHHHHHh-h-hcc--cchhhhhcchHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34567778888765321 1 111 566666666666666655444444444443333
No 372
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=24.98 E-value=1.3e+03 Score=27.84 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=26.7
Q ss_pred hhHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHH
Q psy1888 259 NMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENEN 318 (386)
Q Consensus 259 ~~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~ 318 (386)
+....-.+..+++--+..++..+.....+.|=+..+....+.+++.....+..||+.+..
T Consensus 174 ~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 174 QLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554444433333333333333333333333344444444433
No 373
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=24.90 E-value=2.5e+02 Score=22.43 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=6.8
Q ss_pred HhHHHHHHHHhHhHhh
Q psy1888 279 ATVGNLQTQVESLTTT 294 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~ 294 (386)
.++..|+...+.|.++
T Consensus 12 e~Ia~L~eEGekLSk~ 27 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKK 27 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 374
>KOG4360|consensus
Probab=24.54 E-value=9.8e+02 Score=26.41 Aligned_cols=46 Identities=22% Similarity=0.129 Sum_probs=25.8
Q ss_pred HHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 275 RHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 275 r~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
|..+.++..+|..+++..+++....||..---+.|..+|.+.-.++
T Consensus 208 rdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~ 253 (596)
T KOG4360|consen 208 RDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLR 253 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4455666666666666666655555555544455555555544444
No 375
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=24.42 E-value=6.1e+02 Score=24.00 Aligned_cols=72 Identities=8% Similarity=0.093 Sum_probs=39.1
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccch
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNL 333 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~e 333 (386)
++.++.+....-..-...++++...+++++.++.++.. +-+..++..|.+++...+..+.+....+.-+.+|
T Consensus 111 vk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~--~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~E 182 (224)
T cd07623 111 IKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRT--DKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKE 182 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777666666666777777777777777655421 2233333444444444444444444333333333
No 376
>PLN03188 kinesin-12 family protein; Provisional
Probab=24.40 E-value=3.5e+02 Score=32.73 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMRE---DLSIAEKNLRILIQENENLKNQ 322 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~e---el~~a~~~i~~lq~e~~~l~~e 322 (386)
.|+-.=|+.|..||.+.-.-|+...+=--.+|| -+..|+.+-..+++|++.++++
T Consensus 1176 ~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~ 1233 (1320)
T PLN03188 1176 RYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQ 1233 (1320)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666655533333333222222221 1334455555566666555543
No 377
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.38 E-value=1.1e+03 Score=26.83 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=14.9
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
++.++..+...-..-.++|..+++.+..+++..+.|.
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~La 599 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLA 599 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333333344444444444443333333
No 378
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=24.29 E-value=1.1e+03 Score=27.13 Aligned_cols=60 Identities=28% Similarity=0.443 Sum_probs=35.1
Q ss_pred HHhhhHHHHHHHHHH---HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 264 LDQKNYIEELNRHLN---ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQL 323 (386)
Q Consensus 264 ldQK~ylEElnr~l~---~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~ 323 (386)
..-|+-++.+.-.|. +.+-.+|++++.++.++.-++.-++..+..+...+++.+.|..++
T Consensus 283 ~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdv 345 (775)
T PF10174_consen 283 LAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDV 345 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555666665554 445558888888888877765555544444444444444444443
No 379
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.22 E-value=6.1e+02 Score=23.91 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
+.+-.+-+..+..|..|+.++-.....+.-+...+......+..++.++..|+
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~ 109 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLK 109 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444443444444444444443
No 380
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.98 E-value=4.7e+02 Score=25.02 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 344 MEVAMKLLERDVHQKQDTIIELRR 367 (386)
Q Consensus 344 ~e~a~kllekd~~ekqdt~~~lr~ 367 (386)
+|--+..||.=+..|+..|..|||
T Consensus 172 ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 172 IEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444678899989999999888875
No 381
>PF14645 Chibby: Chibby family
Probab=23.98 E-value=1e+02 Score=26.90 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHH
Q psy1888 312 LIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVH 356 (386)
Q Consensus 312 lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ 356 (386)
+++++.+|++||...+-+ .|+=+-|=+|-..-+.++||+++
T Consensus 76 l~~~n~~L~EENN~Lklk----~elLlDMLtettae~~l~ek~l~ 116 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLK----IELLLDMLTETTAEAHLLEKELE 116 (116)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC
No 382
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=23.94 E-value=2.1e+02 Score=26.25 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=32.4
Q ss_pred HHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 275 RHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 275 r~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
......-.+|+.++++++..|..+...+......+..|.+.-.+++.+..
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~ 134 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYN 134 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHH
Confidence 44455666788888888888877765555444555566666666655444
No 383
>PRK00846 hypothetical protein; Provisional
Probab=23.93 E-value=2.1e+02 Score=23.31 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHH
Q psy1888 266 QKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSI 304 (386)
Q Consensus 266 QK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~ 304 (386)
+-.|-|...-.|+..|...|..++.+...-..+++.|..
T Consensus 21 rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 21 RLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666677777666666666555544
No 384
>KOG4445|consensus
Probab=23.88 E-value=1.1e+02 Score=31.26 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=30.7
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHH
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTNALMREDLSI 304 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~ 304 (386)
.|+|+|..-+.+|+++++.+.+..+.++++.++
T Consensus 144 ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~ea 176 (368)
T KOG4445|consen 144 CLARYLTECLTGLRQEIQDAQKERQHMKEQVEA 176 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Confidence 899999999999999999999999999988765
No 385
>PRK10698 phage shock protein PspA; Provisional
Probab=23.81 E-value=6.5e+02 Score=24.06 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=43.5
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHH
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENEN 318 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~ 318 (386)
-+..|..|...++....++.++...+..++.++..-..|+..+..+++.-..|......
T Consensus 87 Ar~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 87 ARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46668888888888888888888888888888888888877777666665555444333
No 386
>PHA03161 hypothetical protein; Provisional
Probab=23.74 E-value=4.4e+02 Score=24.27 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=30.1
Q ss_pred HHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy1888 264 LDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENE 317 (386)
Q Consensus 264 ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~ 317 (386)
+.|..-++-++..+++++.+.+..++.|-.=|-+--+.+++-.+++.+|.+++.
T Consensus 53 ~~~~~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~ 106 (150)
T PHA03161 53 LKKQKSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIH 106 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556666666666666665555555555555555555555443
No 387
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=23.45 E-value=2.2e+02 Score=27.91 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=25.2
Q ss_pred hhHHHHHhhhHHHHHHHHHHHhHHH-------HHHHHhHhHhhhHHhH
Q psy1888 259 NMSLVLDQKNYIEELNRHLNATVGN-------LQTQVESLTTTNALMR 299 (386)
Q Consensus 259 ~~~~~ldQK~ylEElnr~l~~~~~~-------l~~~~~~l~~~n~~~~ 299 (386)
=+.+|-.|.+-....|..||.++.. |+.++++|.+.|.+|=
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLY 127 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888877777666655554 4444444444444443
No 388
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=23.41 E-value=9e+02 Score=25.57 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHH
Q psy1888 344 MEVAMKLLERDV 355 (386)
Q Consensus 344 ~e~a~kllekd~ 355 (386)
++.|-|+|.+.+
T Consensus 126 v~~A~kil~~~l 137 (445)
T PRK13428 126 VRQAGELVRNHV 137 (445)
T ss_pred HHHHHHHHHHHc
Confidence 445567776655
No 389
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=23.34 E-value=6.7e+02 Score=24.05 Aligned_cols=112 Identities=17% Similarity=0.179 Sum_probs=57.3
Q ss_pred hhHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHh-------HHHHHHHHHHHHHHHHHHHHHHHHhh-------
Q psy1888 259 NMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALM-------REDLSIAEKNLRILIQENENLKNQLA------- 324 (386)
Q Consensus 259 ~~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~-------~eel~~a~~~i~~lq~e~~~l~~e~~------- 324 (386)
.+..++..++.+-+-...++...++|+.|.+.+...-... +..++....++...++-...||.-..
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~AN 149 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKAN 149 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777666688888888888877665543333 33333323333333333333332111
Q ss_pred ----hccccccch-hhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 325 ----NSSQHTSNL-SVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLED 371 (386)
Q Consensus 325 ----~~~~~~~~e-l~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~ 371 (386)
..+...+.| +-+|.++|.+ ++-+.-||+.+.+|---+..|.+=-||
T Consensus 150 eei~~v~~~~~~e~~aLqa~lkk~-e~~~~SLe~~LeQK~kEn~ELtkICDe 200 (207)
T PF05010_consen 150 EEIAQVRSKHQAELLALQASLKKE-EMKVQSLEESLEQKTKENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112222 4455565554 445566666666655554444443333
No 390
>KOG0982|consensus
Probab=23.29 E-value=4.4e+02 Score=28.31 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENL 319 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l 319 (386)
+||=|--+.+.+..|.+..|.+...-+++-.+|++++.++...|+.-..+
T Consensus 309 leeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm 358 (502)
T KOG0982|consen 309 LEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRM 358 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667788888999999999999999999999999999888865544
No 391
>PRK14145 heat shock protein GrpE; Provisional
Probab=23.24 E-value=4.8e+02 Score=24.85 Aligned_cols=23 Identities=17% Similarity=-0.012 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 298 MREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 298 ~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
++++++..++...-++.+.+-.|
T Consensus 57 le~e~~el~d~~lR~~AEfeN~r 79 (196)
T PRK14145 57 KEVEAQEYLDIAQRLKAEFENYR 79 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444434444444555444443
No 392
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.01 E-value=1.6e+02 Score=25.08 Aligned_cols=8 Identities=25% Similarity=0.264 Sum_probs=2.9
Q ss_pred HHHHhHhH
Q psy1888 285 QTQVESLT 292 (386)
Q Consensus 285 ~~~~~~l~ 292 (386)
+++++.++
T Consensus 33 ~~q~~~~~ 40 (105)
T PRK00888 33 NDQVAAQQ 40 (105)
T ss_pred HHHHHHHH
Confidence 33333333
No 393
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=22.65 E-value=4.9e+02 Score=26.93 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=10.5
Q ss_pred CCCCccchhHHHHHHHHhhhhH
Q psy1888 152 TVKTHMGRARAWLRLALMQKKL 173 (386)
Q Consensus 152 ~I~T~~GRgRAWIRlAL~eK~L 173 (386)
.+++..|-.=++|=-+|-...|
T Consensus 93 kLk~G~Ge~vc~VLd~Lad~AL 114 (359)
T PF10498_consen 93 KLKQGSGEHVCYVLDQLADEAL 114 (359)
T ss_pred HhhCCCCHHHHHHHHHHHHHHH
Confidence 3455555544444444444333
No 394
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.62 E-value=2.2e+02 Score=22.39 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 297 LMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 297 ~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
.+..+++.++..+..+++|+..|+.|.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666777777777766554
No 395
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=22.62 E-value=2.6e+02 Score=25.00 Aligned_cols=8 Identities=50% Similarity=0.642 Sum_probs=4.0
Q ss_pred HHHHHhhh
Q psy1888 261 SLVLDQKN 268 (386)
Q Consensus 261 ~~~ldQK~ 268 (386)
..|+++|+
T Consensus 77 eKvl~aKd 84 (126)
T PF13118_consen 77 EKVLDAKD 84 (126)
T ss_pred HHHHHhHH
Confidence 44555554
No 396
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=22.60 E-value=1.8e+02 Score=26.01 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.6
Q ss_pred HHHHHHHHHhHHHHHHHHhHhHhhh
Q psy1888 271 EELNRHLNATVGNLQTQVESLTTTN 295 (386)
Q Consensus 271 EElnr~l~~~~~~l~~~~~~l~~~n 295 (386)
-|+|++|+.|+..|+.+++.+....
T Consensus 14 ~E~N~QLekqi~~l~~kiek~r~n~ 38 (129)
T PF15372_consen 14 LELNDQLEKQIIILREKIEKIRGNP 38 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4899999999999999999887643
No 397
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=22.59 E-value=61 Score=27.52 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=0.0
Q ss_pred HHHHHHHHHh
Q psy1888 364 ELRRQLEDIK 373 (386)
Q Consensus 364 ~lr~ql~~~k 373 (386)
.++.+.+++|
T Consensus 111 ~l~~~~~~lk 120 (131)
T PF05103_consen 111 RLREEIEELK 120 (131)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 398
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=22.57 E-value=6.9e+02 Score=23.92 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1888 349 KLLERDVHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 349 kllekd~~ekqdt~~~lr~ql~~~k~ 374 (386)
..+++....++.++-.|+.-+++++.
T Consensus 164 ~~i~~Ek~~Re~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 164 EKIEKEKNTRESKLSELRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777788888888888775
No 399
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=22.53 E-value=5.8e+02 Score=23.06 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhHHH
Q psy1888 269 YIEELNRHLNATVGN 283 (386)
Q Consensus 269 ylEElnr~l~~~~~~ 283 (386)
+++++.......+.+
T Consensus 46 ~l~~R~~~I~~~l~~ 60 (175)
T PRK14472 46 ALEEREKGIQSSIDR 60 (175)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 400
>KOG0018|consensus
Probab=22.48 E-value=8.2e+02 Score=29.25 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHh
Q psy1888 348 MKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKL 383 (386)
Q Consensus 348 ~kllekd~~ekqdt~~~lr~ql~~~k~in~~~~~~~ 383 (386)
+.-.++|.....-+|..+++|+..|-+---.+-+.+
T Consensus 312 i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei 347 (1141)
T KOG0018|consen 312 IETAKKDYRALKETIERLEKELKAVEGAKEEFEKEI 347 (1141)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777788888888888766554444443
No 401
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=22.48 E-value=6.9e+02 Score=23.90 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=16.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 339 GLKAEMEVAMKLLERDVHQKQDTIIELRRQLED 371 (386)
Q Consensus 339 ~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~ 371 (386)
++..+|.-....++.+...+++--..+.+.|++
T Consensus 125 ~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e 157 (247)
T PF06705_consen 125 ELVRELNELQEAFENERNEREEREENILKRLEE 157 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555444444444443
No 402
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=22.45 E-value=5.7e+02 Score=22.98 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=23.3
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHH
Q psy1888 280 TVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQEN 316 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~ 316 (386)
++.++++.++.........+.++..-++.|..|+.+.
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a 56 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALA 56 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455677777776666666666666666666665543
No 403
>PRK00106 hypothetical protein; Provisional
Probab=22.39 E-value=9.7e+02 Score=26.27 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=12.1
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q psy1888 340 LKAEMEVAMKLLERDVHQKQD 360 (386)
Q Consensus 340 ~k~e~e~a~kllekd~~ekqd 360 (386)
+++|+-.-++-.|.+..+.-|
T Consensus 182 ~~~~~~~~i~~~e~~a~~~a~ 202 (535)
T PRK00106 182 LTHEIATRIREAEREVKDRSD 202 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444544456777777665544
No 404
>KOG0810|consensus
Probab=22.38 E-value=8.2e+02 Score=24.74 Aligned_cols=28 Identities=18% Similarity=0.509 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy1888 354 DVHQKQDTIIELRRQLEDIKMINLEMYK 381 (386)
Q Consensus 354 d~~ekqdt~~~lr~ql~~~k~in~~~~~ 381 (386)
+|.+.+|.|..|.+++.|+-.+=++|..
T Consensus 200 Eiq~Rh~~ik~LEksi~ELhqlFlDMa~ 227 (297)
T KOG0810|consen 200 EIQERHDEIKKLEKSIRELHQLFLDMAV 227 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888777666643
No 405
>KOG4643|consensus
Probab=22.33 E-value=1.2e+03 Score=27.95 Aligned_cols=39 Identities=15% Similarity=0.320 Sum_probs=24.8
Q ss_pred hHHHHHhhhHHHHHHHHHH---------HhHHHHHHHHhHhHhhhHHh
Q psy1888 260 MSLVLDQKNYIEELNRHLN---------ATVGNLQTQVESLTTTNALM 298 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~---------~~~~~l~~~~~~l~~~n~~~ 298 (386)
-++++.-|--+||=-+++. +++-.++++++.++.++...
T Consensus 273 N~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtd 320 (1195)
T KOG4643|consen 273 NRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTD 320 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhH
Confidence 5677777777777666654 34444666666666665555
No 406
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=22.25 E-value=9.4e+02 Score=25.41 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q psy1888 357 QKQDTIIELRRQLE 370 (386)
Q Consensus 357 ekqdt~~~lr~ql~ 370 (386)
||+..+..||+|.-
T Consensus 109 ek~~a~~elr~ei~ 122 (445)
T PRK13428 109 LRAQLTRQLRLELG 122 (445)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555443
No 407
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.22 E-value=6.7e+02 Score=23.65 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHH
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQ 314 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~ 314 (386)
++...|.++..|.....-+..+-.+...++.+++.+...+.+...
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~ 73 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQE 73 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666665555666666655555555544
No 408
>KOG1425|consensus
Probab=22.19 E-value=48 Score=34.51 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=28.4
Q ss_pred hHHHhcccccCccCCccHHHHHHhhccccceecccccCCCCCCCC
Q psy1888 186 DILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQ 230 (386)
Q Consensus 186 ~lL~~~Ye~~AlL~d~E~~vL~~lL~GLn~IdF~l~lk~~~LD~~ 230 (386)
..|.+||+.+||++|++-.+++ -=||+-...+.-||..
T Consensus 326 kFLQKYYHkGAFf~de~de~V~-------KRDfseaT~ed~~dKt 363 (430)
T KOG1425|consen 326 KFLQKYYHKGAFFLDEDDEIVL-------KRDFSEATLEDHLDKT 363 (430)
T ss_pred HHHHHHHhccccccCcchhhHH-------hhcccccccccccccc
Confidence 5889999999999999865321 2367777777777755
No 409
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=22.14 E-value=2.3e+02 Score=23.31 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1888 299 REDLSIAEKNLRILIQENENLKNQLANS 326 (386)
Q Consensus 299 ~eel~~a~~~i~~lq~e~~~l~~e~~~~ 326 (386)
...|...-++|.+.++|+..|++||...
T Consensus 29 Q~sL~~L~~Rve~Vk~E~~kL~~EN~~L 56 (80)
T PF10224_consen 29 QDSLEALSDRVEEVKEENEKLESENEYL 56 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444578888888898888888753
No 410
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=22.08 E-value=4.1e+02 Score=23.31 Aligned_cols=51 Identities=33% Similarity=0.436 Sum_probs=31.8
Q ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 261 SLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 261 ~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
..+.||-.-+|+-.-.+-++++.+.+.+.++=++|+- |+=||+.||.-++.
T Consensus 4 keiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~--------------L~lENe~LR~RL~~ 54 (114)
T COG4467 4 KEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTA--------------LRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--------------HHhhHHHHHHHhCC
Confidence 4567777777766666666666666666665555543 45566677765554
No 411
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=21.92 E-value=6.5e+02 Score=26.84 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHH
Q psy1888 275 RHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERD 354 (386)
Q Consensus 275 r~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd 354 (386)
..|+++++++...+.+++.+-..-..++...+..|..+-..+..+..+-...+..+.+-|--=-.|-..=-.++.+..+|
T Consensus 62 ~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~ed 141 (420)
T COG4942 62 AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPED 141 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhh
Q ss_pred --------------HHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q psy1888 355 --------------VHQKQDTIIELRRQLEDIKMINLEMYKK 382 (386)
Q Consensus 355 --------------~~ekqdt~~~lr~ql~~~k~in~~~~~~ 382 (386)
.++..+.|.+|-+.+.+++.+-..+-.+
T Consensus 142 a~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaae 183 (420)
T COG4942 142 AQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAE 183 (420)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 412
>KOG2264|consensus
Probab=21.92 E-value=3.2e+02 Score=30.50 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=16.6
Q ss_pred HHHHHHHHHH---hHHHHHHHHhHhHhhhHHh
Q psy1888 270 IEELNRHLNA---TVGNLQTQVESLTTTNALM 298 (386)
Q Consensus 270 lEElnr~l~~---~~~~l~~~~~~l~~~n~~~ 298 (386)
++|..|-+++ .+.+|+.|-++|..+-++.
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~ 112 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEI 112 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 8888887764 3444555555554443333
No 413
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=21.89 E-value=2.6e+02 Score=28.74 Aligned_cols=44 Identities=25% Similarity=0.261 Sum_probs=26.1
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
+...+.++..+++.++..+..+..++...+..+..+++++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 6 LEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444455555666666666665555555666666777666655
No 414
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=21.58 E-value=8.2e+02 Score=24.45 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=7.4
Q ss_pred CCCCccchhHHHHHH
Q psy1888 152 TVKTHMGRARAWLRL 166 (386)
Q Consensus 152 ~I~T~~GRgRAWIRl 166 (386)
.|.|-.+|. +||+.
T Consensus 42 ~i~tE~dRV-~Fik~ 55 (267)
T PF10234_consen 42 DIDTEQDRV-FFIKS 55 (267)
T ss_pred cCCcHHHHH-HHHHH
Confidence 356766663 44543
No 415
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=21.56 E-value=4.5e+02 Score=21.46 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENE 317 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~ 317 (386)
-|.++|...+..+..++.+...=.+.-..+|.+|+....+|..++..+.
T Consensus 33 ~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~ 81 (88)
T PF10241_consen 33 ELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777777777778888877777777776554
No 416
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=21.46 E-value=7.5e+02 Score=25.17 Aligned_cols=82 Identities=23% Similarity=0.312 Sum_probs=39.4
Q ss_pred HHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccchhhhhhcchHHHHHHHHHHHHHHHHHH
Q psy1888 281 VGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQH-TSNLSVHEVGLKAEMEVAMKLLERDVHQKQ 359 (386)
Q Consensus 281 ~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~-~~~el~~q~~~k~e~e~a~kllekd~~ekq 359 (386)
|+=||+|==++.-=.+++||- .+++-+--.|...||.++..+|++ +|.|-. +=|-.+|+|=--|+|++=+
T Consensus 60 LTPLQQKEV~iRHLkakLkes----~~~l~dRetEI~eLksQL~RMrEDWIEEECH-----RVEAQLALKEARkEIkQLk 130 (305)
T PF15290_consen 60 LTPLQQKEVCIRHLKAKLKES----ENRLHDRETEIDELKSQLARMREDWIEEECH-----RVEAQLALKEARKEIKQLK 130 (305)
T ss_pred cChHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 334555543433333344332 233444444555555555555555 455421 1223334444456666666
Q ss_pred HHHHHHHHHHHH
Q psy1888 360 DTIIELRRQLED 371 (386)
Q Consensus 360 dt~~~lr~ql~~ 371 (386)
..|...|.-|-|
T Consensus 131 QvieTmrssL~e 142 (305)
T PF15290_consen 131 QVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHhhhch
Confidence 666666666654
No 417
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=21.39 E-value=3.6e+02 Score=29.18 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=25.6
Q ss_pred ccchhHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhh
Q psy1888 256 VEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTT 294 (386)
Q Consensus 256 ~~~~~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~ 294 (386)
+|..+..+-+..+-+..+.|.-..++.++....+.+++.
T Consensus 299 dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~e 337 (563)
T TIGR00634 299 DPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEE 337 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 566677777777777777777766666665555555544
No 418
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=21.22 E-value=1.1e+03 Score=25.84 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=26.7
Q ss_pred CCcccCCChHHHHHHHHHHHHHhcCCCCCCCC---CCC-CCCchHHHH
Q psy1888 88 GRMLDSDHMPLQHFFIVLEHVLRHGLKPKKGL---LGP-KKELWDILQ 131 (386)
Q Consensus 88 ~r~I~dd~~~L~~LC~~LE~iL~HGLK~k~~~---~g~-~~~fW~~l~ 131 (386)
.||+.|-.-.=++--.++..++-.|+-.+.|. +.| .++|-.++.
T Consensus 97 pRplrdk~yqq~c~~~I~~yL~engfd~pis~k~l~~PS~k~F~~IFK 144 (622)
T COG5185 97 PRPLRDKNYQQACQEEIYDYLKENGFDIPISIKFLKQPSQKGFIIIFK 144 (622)
T ss_pred CcccccchHHHHHHHHHHHHHHHcCCCcchhHHHhcCCccccHHHHHH
Confidence 45777755444444567888888888877652 332 456655444
No 419
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=20.97 E-value=95 Score=25.96 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhCchhHHHhcccccCccCCcc-----H-HHHHHhhcccc
Q psy1888 172 KLADYLQVLVDHRDDILVEYFETDALLMSDE-----A-IVILGKLLSLN 214 (386)
Q Consensus 172 ~Ls~yL~~Ll~n~~~lL~~~Ye~~AlL~d~E-----~-~vL~~lL~GLn 214 (386)
=+..|...+-.+| +.|..||.+.|.|.-+. + ..|...+..|.
T Consensus 9 Fv~~YY~~l~~~~-~~L~~fY~~~s~~~~~~~~~~~g~~~I~~~l~~lp 56 (119)
T cd00780 9 FVQQYYSIFDNNR-EGLHRLYGDTSMLSREGMKQVTGRDAIVEKLSSLP 56 (119)
T ss_pred HHHHHHHHHhcCH-HHHHhhcCCCcEEEECCceEecCHHHHHHHHHhCC
Confidence 3567888999998 78999999999887444 3 56667777766
No 420
>KOG2911|consensus
Probab=20.92 E-value=2.9e+02 Score=29.47 Aligned_cols=72 Identities=19% Similarity=0.187 Sum_probs=40.7
Q ss_pred HHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHH
Q psy1888 274 NRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLER 353 (386)
Q Consensus 274 nr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllek 353 (386)
+.++-.+-..|+.|++.|+++-.+.++++-+ .+. +... +|-...-.|-|++||
T Consensus 235 V~~L~~~~~~L~kqie~L~qeie~~~~~~r~----------~~k---------------~g~K--~iA~~ylr~rk~~eK 287 (439)
T KOG2911|consen 235 VADLIQARAKLAKQIEFLEQEIEKSKEKLRQ----------ALK---------------EGKK--QIAITYLRARKLLEK 287 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH---------------hcch--HHHHHHHHHHHHHHh
Confidence 3345556666677777776665555444332 111 1111 234445557799999
Q ss_pred HHH---HHHHHHHHHHHHHHHH
Q psy1888 354 DVH---QKQDTIIELRRQLEDI 372 (386)
Q Consensus 354 d~~---ekqdt~~~lr~ql~~~ 372 (386)
++. -+++++.+++-|.++-
T Consensus 288 ~~er~~~~l~~l~~vl~~Id~s 309 (439)
T KOG2911|consen 288 DLERKVSSLNNLETVLSQIDNS 309 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHhh
Confidence 853 4567777777777654
No 421
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=20.83 E-value=7.3e+02 Score=23.54 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=25.2
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhh
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTN 295 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n 295 (386)
-..+|-+|.|.|..--.+.+|+.+|...+..++-.+
T Consensus 69 Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~ 104 (191)
T PTZ00446 69 AKILLKRKKLYEQEIENILNNRLTLEDNMINLENMH 104 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888877777777777777777777666554
No 422
>PF15605 Toxin_52: Putative toxin 52
Probab=20.72 E-value=1e+02 Score=26.65 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=29.8
Q ss_pred CCchHHHHHHHhhCCcccchhhhhcc-CCCCCCccchhHHHHHHHHhh
Q psy1888 124 KELWDILQLVEKLNPEASDITASVRD-LPTVKTHMGRARAWLRLALMQ 170 (386)
Q Consensus 124 ~~fW~~l~~~~k~~P~~~d~i~~I~~-L~~I~T~~GRgRAWIRlAL~e 170 (386)
-+||++++.+.....++.++.+.++. +++-.++ +++|..+--+|++
T Consensus 43 GgywdHlqEm~da~~GL~n~~~~le~~L~np~l~-~~~r~~lq~~l~e 89 (103)
T PF15605_consen 43 GGYWDHLQEMQDAYRGLVNRKRTLEGSLKNPNLS-GRTRELLQSKLNE 89 (103)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHHHH
Confidence 48999999987655555556566655 4443322 6778777666654
No 423
>KOG0964|consensus
Probab=20.69 E-value=7.8e+02 Score=29.33 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=24.0
Q ss_pred ccCCc-c-HHHHHHhhcccc--ceecccccCC---CCCCCC--Cccccchhhhh
Q psy1888 197 LLMSD-E-AIVILGKLLSLN--VIDCNLCVKE---EDLDCQ--QGVIDFSLYLR 241 (386)
Q Consensus 197 lL~d~-E-~~vL~~lL~GLn--~IdF~l~lk~---~~LD~~--~~vId~s~yl~ 241 (386)
++.+. | ++.|+..+..++ .|.| ++++. .+-+++ +.+|+..-+++
T Consensus 553 iVVdndevATkIl~~~n~m~~GrVTF-~PLNrl~~r~v~yp~~sdaiPli~kl~ 605 (1200)
T KOG0964|consen 553 IVVDNDEVATKILRKLNKMKGGRVTF-MPLNRLKARDVEYPKDSDAIPLISKLR 605 (1200)
T ss_pred EEecccHHHHHHHHHHHhccCCeeEE-eecccCchhhccCCCCCCccchHHHhC
Confidence 34444 4 367776666555 5888 66644 223332 44566555555
No 424
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.63 E-value=1.9e+02 Score=29.87 Aligned_cols=12 Identities=8% Similarity=0.537 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhH
Q psy1888 270 IEELNRHLNATV 281 (386)
Q Consensus 270 lEElnr~l~~~~ 281 (386)
+|++-++...++
T Consensus 49 ~E~~Kk~~~~qL 60 (370)
T PF02994_consen 49 LEDFKKDFKNQL 60 (370)
T ss_dssp ------------
T ss_pred HHHhhhhhHHHH
Confidence 344444443333
No 425
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=20.60 E-value=4.2e+02 Score=26.84 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=36.9
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhh-cchHHHHHHHHHHHHHHHHH---H
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEV-GLKAEMEVAMKLLERDVHQK---Q 359 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~-~~k~e~e~a~kllekd~~ek---q 359 (386)
++.+++.++..-....++|+..+..+.++.+++..++.++.....+ ...|+.++ .++.-++.|.+|+..=..|+ .
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e-~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~ 297 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKE-KQELEEEIEETERKLERAEKLISGLSGEKERWS 297 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence 4444444444444444444544555555555555554444321111 01111111 12334666666665433333 2
Q ss_pred HHHHHHHHHHHH
Q psy1888 360 DTIIELRRQLED 371 (386)
Q Consensus 360 dt~~~lr~ql~~ 371 (386)
.++..+..++.-
T Consensus 298 ~~~~~l~~~~~~ 309 (344)
T PF12777_consen 298 EQIEELEEQLKN 309 (344)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 344444444443
No 426
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=20.45 E-value=2.7e+02 Score=23.21 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=10.5
Q ss_pred HHHhHHHHHHHHhHhHhhhHHh
Q psy1888 277 LNATVGNLQTQVESLTTTNALM 298 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~ 298 (386)
|+++|..|+++++.+...-...
T Consensus 29 Lss~V~~L~~kvdql~~dv~~a 50 (85)
T PRK09973 29 LASNVQTLNAKIARLEQDMKAL 50 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544443333
No 427
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=20.42 E-value=8e+02 Score=23.88 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=28.5
Q ss_pred HHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 276 HLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 276 ~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
.+++++..++..+..++.+-...+.+++.|+..+...+.+.+..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~ 136 (334)
T TIGR00998 91 ALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVP 136 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445555555555555555555566777777777777777666553
No 428
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.31 E-value=9.2e+02 Score=24.64 Aligned_cols=40 Identities=18% Similarity=0.377 Sum_probs=22.5
Q ss_pred hhHHHHHhhhHHHHHH---HHHH--HhHHHHHHHHhHhHhhhHHh
Q psy1888 259 NMSLVLDQKNYIEELN---RHLN--ATVGNLQTQVESLTTTNALM 298 (386)
Q Consensus 259 ~~~~~ldQK~ylEEln---r~l~--~~~~~l~~~~~~l~~~n~~~ 298 (386)
.|..+-+=.+|||+.- ..|- .-|....++|...++.|...
T Consensus 88 dF~~l~~yNdYLE~vEdii~nL~~~~d~~~te~~l~~y~~~n~~~ 132 (309)
T TIGR00570 88 DFPSLREYNDYLEEVEDIVYNLTNNIDLENTKKKIETYQKENKDV 132 (309)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhHHH
Confidence 3555556667888643 3332 23344666777777666555
No 429
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=20.24 E-value=4.9e+02 Score=26.82 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=0.0
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHH----------------------------HHHHHHHHHHHhhhccccc
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRI----------------------------LIQENENLKNQLANSSQHT 330 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~----------------------------lq~e~~~l~~e~~~~~~~~ 330 (386)
+.|-+.|.|+.++.++..-+.+||+.||-...- ||-|+++||.-+..+..-.
T Consensus 59 NavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtA 138 (351)
T PF07058_consen 59 NAVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTA 138 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cchhhhhhcchHHHHHHHHHHHHHH
Q psy1888 331 SNLSVHEVGLKAEMEVAMKLLERDV 355 (386)
Q Consensus 331 ~~el~~q~~~k~e~e~a~kllekd~ 355 (386)
..|-. +|.-+.+.+|.||..+
T Consensus 139 kaEaQ----LkeK~klRLK~LEe~L 159 (351)
T PF07058_consen 139 KAEAQ----LKEKLKLRLKVLEEGL 159 (351)
T ss_pred HHHHH----HHHHHHHHHHHHHhhc
No 430
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.17 E-value=4.9e+02 Score=21.36 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHh
Q psy1888 361 TIIELRRQLEDIKMINLEMYKKL 383 (386)
Q Consensus 361 t~~~lr~ql~~~k~in~~~~~~~ 383 (386)
.|..|+++-......|-.|.+++
T Consensus 76 ~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 76 QIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555555554444
No 431
>PRK15396 murein lipoprotein; Provisional
Probab=20.04 E-value=3.6e+02 Score=22.02 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHH
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLR 310 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~ 310 (386)
|++++..+...++.+...-..-++|-+.|+.+|-
T Consensus 37 L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 37 LNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444444555555555543
Done!