Query psy1888
Match_columns 386
No_of_seqs 177 out of 336
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 18:49:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dwk_A Protein RUFY3; RUN doma 100.0 2.2E-49 7.5E-54 361.6 14.2 177 58-235 4-180 (180)
2 3cwz_B RAB6IP1, RAB6-interacti 100.0 4.1E-32 1.4E-36 273.0 11.4 189 47-245 20-259 (384)
3 4giw_A RUN and SH3 domain-cont 99.9 2.3E-28 7.9E-33 225.6 7.4 161 62-223 4-188 (198)
4 4gkw_A Spindle assembly abnorm 95.8 0.14 4.9E-06 44.5 12.0 94 281-383 41-145 (167)
5 2v71_A Nuclear distribution pr 95.7 0.29 9.9E-06 44.8 14.8 118 260-384 5-126 (189)
6 3ghg_A Fibrinogen alpha chain; 94.9 0.099 3.4E-06 54.3 9.7 105 270-377 55-193 (562)
7 2jee_A YIIU; FTSZ, septum, coi 94.7 0.15 5.1E-06 40.7 8.3 57 269-325 10-66 (81)
8 3oja_B Anopheles plasmodium-re 94.6 0.14 4.7E-06 52.6 10.3 29 346-374 544-572 (597)
9 3m91_A Proteasome-associated A 94.4 0.11 3.9E-06 38.0 6.5 42 278-319 8-49 (51)
10 2dfs_A Myosin-5A; myosin-V, in 93.6 0.44 1.5E-05 53.6 12.3 12 363-374 1033-1044(1080)
11 3ol1_A Vimentin; structural ge 93.5 0.61 2.1E-05 39.3 10.4 28 277-304 18-45 (119)
12 2ocy_A RAB guanine nucleotide 92.6 1.8 6E-05 38.4 12.2 32 344-375 113-144 (154)
13 3na7_A HP0958; flagellar bioge 91.7 1.8 6E-05 40.6 11.9 32 284-315 51-82 (256)
14 3na7_A HP0958; flagellar bioge 90.1 6.4 0.00022 36.7 14.2 44 281-324 27-70 (256)
15 2dfs_A Myosin-5A; myosin-V, in 89.5 0.8 2.7E-05 51.6 8.7 26 274-299 923-948 (1080)
16 3oja_B Anopheles plasmodium-re 89.1 1.7 5.7E-05 44.5 10.1 116 260-375 430-552 (597)
17 1deq_A Fibrinogen (alpha chain 88.1 2.8 9.4E-05 42.1 10.4 113 272-384 60-203 (390)
18 2oqq_A Transcription factor HY 87.6 1.1 3.8E-05 31.4 5.1 15 307-321 24-38 (42)
19 3hnw_A Uncharacterized protein 87.5 3.9 0.00013 35.3 9.9 69 256-325 53-121 (138)
20 3swk_A Vimentin; cytoskeleton, 87.2 3.1 0.00011 33.1 8.4 23 281-303 2-24 (86)
21 3cvf_A Homer-3, homer protein 86.3 3.6 0.00012 32.5 8.2 71 276-371 3-73 (79)
22 3m9b_A Proteasome-associated A 86.0 0.81 2.8E-05 43.5 5.1 42 280-321 55-96 (251)
23 3ol1_A Vimentin; structural ge 85.7 6.1 0.00021 33.1 9.9 28 268-295 20-50 (119)
24 2w6a_A ARF GTPase-activating p 85.0 3.9 0.00014 30.7 7.3 48 268-320 14-61 (63)
25 2v71_A Nuclear distribution pr 85.0 4.6 0.00016 36.8 9.4 107 272-379 42-177 (189)
26 3nmd_A CGMP dependent protein 84.2 2.5 8.5E-05 33.0 6.2 34 339-375 36-69 (72)
27 3o0z_A RHO-associated protein 83.9 14 0.00049 33.0 11.9 41 284-324 39-79 (168)
28 1m1j_A Fibrinogen alpha subuni 83.7 8.3 0.00028 39.6 11.5 107 272-378 58-195 (491)
29 2e7s_A RAB guanine nucleotide 82.3 4.1 0.00014 35.3 7.5 111 264-375 18-132 (135)
30 2v66_B Nuclear distribution pr 82.1 15 0.00052 30.7 10.7 50 273-325 4-53 (111)
31 1zxa_A CGMP-dependent protein 82.0 1.4 4.9E-05 33.8 4.0 43 332-377 14-56 (67)
32 3tnu_A Keratin, type I cytoske 81.1 6.6 0.00022 33.2 8.4 71 280-352 46-129 (131)
33 3tnu_B Keratin, type II cytosk 80.3 6.8 0.00023 33.0 8.2 72 279-352 43-127 (129)
34 3o0z_A RHO-associated protein 79.7 15 0.00051 32.9 10.4 98 264-361 40-162 (168)
35 2zqm_A Prefoldin beta subunit 79.4 21 0.00071 28.7 10.7 91 278-372 12-110 (117)
36 1i84_S Smooth muscle myosin he 78.6 5.5 0.00019 45.0 9.1 11 73-83 662-672 (1184)
37 1i84_S Smooth muscle myosin he 77.5 6.8 0.00023 44.3 9.4 7 157-163 768-774 (1184)
38 1go4_E MAD1 (mitotic arrest de 77.2 7.2 0.00025 32.1 7.1 25 279-303 12-36 (100)
39 2akf_A Coronin-1A; coiled coil 77.1 3.2 0.00011 27.0 3.8 26 269-294 3-28 (32)
40 1fxk_A Prefoldin; archaeal pro 74.9 29 0.001 27.4 10.5 87 278-371 7-104 (107)
41 1gd2_E Transcription factor PA 73.6 5.4 0.00018 30.8 5.1 52 264-319 18-69 (70)
42 3cvf_A Homer-3, homer protein 71.9 23 0.00078 27.9 8.4 39 267-305 15-53 (79)
43 3mq9_A Bone marrow stromal ant 71.6 29 0.00098 34.4 11.4 35 284-318 402-436 (471)
44 3s9g_A Protein hexim1; cyclin 70.8 18 0.0006 29.8 7.8 42 284-325 42-83 (104)
45 3cve_A Homer protein homolog 1 70.5 35 0.0012 26.4 9.5 35 269-303 11-45 (72)
46 3hnw_A Uncharacterized protein 69.3 21 0.0007 30.7 8.4 37 284-320 73-109 (138)
47 3iv1_A Tumor susceptibility ge 68.9 22 0.00077 27.9 7.8 50 272-321 11-60 (78)
48 1t2k_D Cyclic-AMP-dependent tr 68.8 9.4 0.00032 28.1 5.4 36 280-322 23-58 (61)
49 3mov_A Lamin-B1; LMNB1, B-type 68.5 6.8 0.00023 31.8 4.9 17 337-353 72-90 (95)
50 4emc_A Monopolin complex subun 67.4 6 0.00021 36.1 4.8 33 288-320 22-54 (190)
51 3htk_A Structural maintenance 67.3 32 0.0011 24.7 8.3 54 264-317 4-57 (60)
52 4emc_A Monopolin complex subun 67.1 12 0.00041 34.1 6.7 73 296-383 9-81 (190)
53 1x8y_A Lamin A/C; structural p 66.9 14 0.00048 29.2 6.4 48 305-354 33-82 (86)
54 3cve_A Homer protein homolog 1 66.9 42 0.0014 26.0 9.4 64 283-371 4-67 (72)
55 2jee_A YIIU; FTSZ, septum, coi 65.6 49 0.0017 26.2 10.2 23 349-371 58-80 (81)
56 1t6f_A Geminin; coiled-coil, c 64.7 9.3 0.00032 25.9 4.1 28 293-320 7-34 (37)
57 3tnu_B Keratin, type II cytosk 64.2 28 0.00096 29.1 8.2 24 299-322 35-58 (129)
58 1gk4_A Vimentin; intermediate 63.6 42 0.0014 26.1 8.6 47 305-353 31-79 (84)
59 3swf_A CGMP-gated cation chann 62.9 37 0.0013 26.5 7.8 47 270-319 5-51 (74)
60 3qh9_A Liprin-beta-2; coiled-c 62.8 38 0.0013 26.8 8.0 40 279-318 26-65 (81)
61 2w83_C C-JUN-amino-terminal ki 62.4 39 0.0013 26.5 7.9 61 261-321 12-72 (77)
62 2oqq_A Transcription factor HY 62.1 17 0.00059 25.4 5.2 31 270-300 8-38 (42)
63 3s4r_A Vimentin; alpha-helix, 61.7 60 0.002 25.9 9.6 35 259-293 10-44 (93)
64 1uii_A Geminin; human, DNA rep 61.6 28 0.00095 27.7 7.0 14 268-281 28-41 (83)
65 3tnu_A Keratin, type I cytoske 60.3 23 0.00078 29.8 6.9 24 299-322 37-60 (131)
66 1jnm_A Proto-oncogene C-JUN; B 60.1 8.7 0.0003 28.4 3.7 36 279-321 22-57 (62)
67 2ocy_A RAB guanine nucleotide 56.2 44 0.0015 29.4 8.1 53 269-321 87-143 (154)
68 1deb_A APC protein, adenomatou 55.6 34 0.0012 24.9 6.0 37 283-319 7-43 (54)
69 1jcd_A Major outer membrane li 55.4 45 0.0015 24.2 6.7 34 276-309 15-48 (52)
70 1ci6_A Transcription factor AT 54.2 25 0.00084 26.2 5.4 35 280-321 24-58 (63)
71 3swy_A Cyclic nucleotide-gated 54.0 52 0.0018 23.4 6.7 26 269-294 2-27 (46)
72 2wt7_A Proto-oncogene protein 53.0 32 0.0011 25.4 5.9 35 280-321 24-58 (63)
73 2k48_A Nucleoprotein; viral pr 51.6 34 0.0012 28.4 6.2 14 361-374 90-103 (107)
74 3mq7_A Bone marrow stromal ant 51.3 78 0.0027 26.7 8.5 16 271-286 24-39 (121)
75 1m1j_B Fibrinogen beta chain; 50.8 2.2E+02 0.0075 29.1 14.7 26 269-294 90-115 (464)
76 1wlq_A Geminin; coiled-coil; 2 48.4 58 0.002 25.9 6.9 46 268-320 20-65 (83)
77 2v4h_A NF-kappa-B essential mo 47.2 1.1E+02 0.0038 25.5 8.7 6 364-369 101-106 (110)
78 3vkg_A Dynein heavy chain, cyt 47.0 1.8E+02 0.0062 36.8 14.1 19 260-278 1904-1923(3245)
79 3i00_A HIP-I, huntingtin-inter 47.0 58 0.002 27.4 7.2 16 277-292 20-35 (120)
80 2v66_B Nuclear distribution pr 46.1 87 0.003 26.1 8.0 39 341-379 30-68 (111)
81 1wt6_A Myotonin-protein kinase 46.0 79 0.0027 25.0 7.3 29 292-320 37-65 (81)
82 2wvr_A Geminin; DNA replicatio 44.4 1.2E+02 0.004 28.0 9.2 46 268-320 97-142 (209)
83 3a7p_A Autophagy protein 16; c 43.3 1.6E+02 0.0055 25.8 9.6 47 279-325 68-114 (152)
84 3a7p_A Autophagy protein 16; c 42.1 1.8E+02 0.0061 25.5 9.8 56 269-324 72-127 (152)
85 2xnx_M M protein, M1-BC1; cell 39.9 1.2E+02 0.0042 26.4 8.2 69 282-357 69-140 (146)
86 3iox_A AGI/II, PA; alpha helix 39.6 2.4E+02 0.0083 29.1 11.7 45 278-325 8-52 (497)
87 1t2k_D Cyclic-AMP-dependent tr 39.6 49 0.0017 24.1 5.0 28 274-301 31-58 (61)
88 2zxx_A Geminin; coiled-coil, c 39.4 79 0.0027 24.9 6.4 46 268-320 16-61 (79)
89 1fxk_C Protein (prefoldin); ar 39.2 1.6E+02 0.0054 24.1 9.3 28 344-371 100-127 (133)
90 3vkg_A Dynein heavy chain, cyt 38.6 1.5E+02 0.0052 37.5 11.7 85 286-371 2014-2102(3245)
91 3l4q_C Phosphatidylinositol 3- 37.9 58 0.002 29.1 6.1 46 282-327 99-144 (170)
92 3a7o_A Autophagy protein 16; c 37.4 1.4E+02 0.0049 23.1 7.4 26 280-305 19-44 (75)
93 3efg_A Protein SLYX homolog; x 37.2 1E+02 0.0035 23.9 6.7 35 268-302 24-58 (78)
94 3mq7_A Bone marrow stromal ant 37.1 1.5E+02 0.005 25.1 8.0 17 309-325 73-89 (121)
95 1gd2_E Transcription factor PA 36.9 48 0.0016 25.4 4.7 28 277-304 34-61 (70)
96 1hjb_A Ccaat/enhancer binding 36.5 52 0.0018 26.2 5.0 33 283-322 40-72 (87)
97 3htk_A Structural maintenance 36.1 1.1E+02 0.0039 21.6 6.5 43 279-321 5-47 (60)
98 2ic6_A Nucleocapsid protein; h 36.1 86 0.0029 24.6 6.0 24 308-331 6-29 (78)
99 3trt_A Vimentin; cytoskeleton, 35.7 1.4E+02 0.0047 22.4 7.8 40 284-323 33-72 (77)
100 2wt7_B Transcription factor MA 35.5 37 0.0013 27.3 4.0 25 279-303 55-79 (90)
101 2yy0_A C-MYC-binding protein; 35.3 35 0.0012 24.7 3.5 16 283-298 30-45 (53)
102 1dh3_A Transcription factor CR 35.0 39 0.0013 24.5 3.7 23 281-303 24-46 (55)
103 2ic9_A Nucleocapsid protein; h 34.9 78 0.0027 25.8 5.8 24 308-331 6-29 (96)
104 3s4r_A Vimentin; alpha-helix, 34.4 1.7E+02 0.0059 23.2 9.2 61 258-320 16-76 (93)
105 4fi5_A Nucleoprotein; structur 33.4 84 0.0029 26.3 5.9 25 308-332 23-47 (113)
106 1gu4_A CAAT/enhancer binding p 33.2 53 0.0018 25.6 4.5 33 282-321 39-71 (78)
107 3q0x_A Centriole protein; cent 33.2 1.6E+02 0.0054 27.4 8.4 53 265-317 164-216 (228)
108 2fxo_A Myosin heavy chain, car 33.1 2.1E+02 0.0071 23.7 13.7 14 359-372 110-123 (129)
109 1dip_A Delta-sleep-inducing pe 32.4 14 0.00049 28.8 1.0 30 299-328 14-43 (78)
110 2e7s_A RAB guanine nucleotide 31.9 23 0.0008 30.6 2.4 6 306-311 88-93 (135)
111 3trt_A Vimentin; cytoskeleton, 31.4 1.6E+02 0.0056 21.9 9.5 46 275-320 31-76 (77)
112 3mq9_A Bone marrow stromal ant 31.4 3.6E+02 0.012 26.3 11.4 43 279-325 373-415 (471)
113 1fxk_C Protein (prefoldin); ar 31.3 1.4E+02 0.0046 24.6 7.1 23 269-291 92-114 (133)
114 3he5_B Synzip2; heterodimeric 30.9 1.4E+02 0.0048 21.0 6.0 40 284-323 8-47 (52)
115 3u06_A Protein claret segregat 30.9 1.2E+02 0.004 30.3 7.8 49 276-324 7-55 (412)
116 3hhm_B NISH2 P85alpha; PI3KCA, 30.8 1.1E+02 0.0039 30.1 7.5 48 280-327 206-253 (373)
117 2dgc_A Protein (GCN4); basic d 30.6 55 0.0019 24.3 4.0 25 279-303 30-54 (63)
118 1lwu_C Fibrinogen gamma chain; 30.3 1.1E+02 0.0038 29.8 7.2 48 260-321 7-54 (323)
119 3q4f_C DNA repair protein XRCC 28.2 68 0.0023 29.0 4.8 32 270-301 152-183 (186)
120 2zxx_A Geminin; coiled-coil, c 28.1 1.3E+02 0.0046 23.6 5.9 34 272-305 34-67 (79)
121 1gs9_A Apolipoprotein E, APOE4 27.8 2.5E+02 0.0084 24.5 8.4 35 264-298 51-85 (165)
122 4fla_A Regulation of nuclear P 27.6 2.4E+02 0.0083 24.3 8.3 62 270-339 84-145 (152)
123 1a93_B MAX protein, coiled coi 27.6 78 0.0027 21.2 3.8 23 280-302 8-30 (34)
124 1m5i_A APC protein; coiled-coi 27.5 2.1E+02 0.0071 24.3 7.4 29 333-361 74-109 (125)
125 1wle_A Seryl-tRNA synthetase; 27.5 4.6E+02 0.016 26.8 11.6 84 256-365 49-149 (501)
126 3vp9_A General transcriptional 27.3 1.2E+02 0.0042 24.4 5.8 45 271-318 39-86 (92)
127 3s84_A Apolipoprotein A-IV; fo 27.3 1E+02 0.0035 29.1 6.2 20 342-361 252-271 (273)
128 1s1c_X RHO-associated, coiled- 27.1 1.3E+02 0.0043 23.2 5.5 13 308-320 21-33 (71)
129 1m1j_C Fibrinogen gamma chain; 27.1 4.8E+02 0.017 26.0 11.8 22 348-369 107-128 (409)
130 1ik9_A DNA repair protein XRCC 26.9 3.6E+02 0.012 24.5 10.3 68 284-369 130-198 (213)
131 2fxo_A Myosin heavy chain, car 26.9 2.7E+02 0.0092 23.0 14.1 27 339-365 76-102 (129)
132 3iyk_A VP5; icosahedral virus; 26.3 2.9E+02 0.01 28.6 9.7 8 205-212 47-54 (526)
133 2zvf_A Alanyl-tRNA synthetase; 26.1 73 0.0025 27.1 4.6 51 261-311 7-57 (171)
134 1uix_A RHO-associated kinase; 25.8 1.7E+02 0.0059 22.5 6.1 13 308-320 19-31 (71)
135 4etp_A Kinesin-like protein KA 25.3 1.9E+02 0.0063 28.7 8.0 32 272-303 10-41 (403)
136 2j5u_A MREC protein; bacterial 24.6 49 0.0017 30.9 3.4 17 308-324 44-60 (255)
137 3w03_C DNA repair protein XRCC 24.5 1.3E+02 0.0046 27.0 6.1 32 272-303 145-176 (184)
138 3bbp_D GRIP and coiled-coil do 24.4 82 0.0028 24.3 3.9 10 312-321 48-57 (71)
139 1ykh_A RNA polymerase II media 24.2 1.1E+02 0.0036 25.4 5.0 31 345-375 75-105 (108)
140 2dq0_A Seryl-tRNA synthetase; 23.7 3.8E+02 0.013 26.9 10.0 85 256-365 10-102 (455)
141 3oja_A Leucine-rich immune mol 23.6 5.2E+02 0.018 25.2 12.5 39 340-378 422-460 (487)
142 3s9g_A Protein hexim1; cyclin 23.1 3.1E+02 0.011 22.4 7.9 18 308-325 73-90 (104)
143 3mud_A DNA repair protein XRCC 23.1 2.5E+02 0.0085 25.1 7.5 44 270-320 126-169 (175)
144 2yy0_A C-MYC-binding protein; 23.1 96 0.0033 22.3 4.0 16 306-321 32-47 (53)
145 1jnm_A Proto-oncogene C-JUN; B 23.0 70 0.0024 23.4 3.3 24 275-298 32-55 (62)
146 1jcd_A Major outer membrane li 22.7 1.9E+02 0.0067 20.8 5.5 29 275-303 7-35 (52)
147 4etp_A Kinesin-like protein KA 22.5 2E+02 0.0068 28.5 7.6 47 277-323 8-54 (403)
148 1uii_A Geminin; human, DNA rep 22.3 1.8E+02 0.006 23.1 5.7 47 256-307 25-74 (83)
149 3u06_A Protein claret segregat 22.3 2.1E+02 0.0073 28.5 7.8 54 268-321 6-59 (412)
150 4b4t_K 26S protease regulatory 22.1 1.1E+02 0.0037 30.7 5.6 48 274-321 44-91 (428)
151 2ve7_A Kinetochore protein HEC 21.7 97 0.0033 29.7 5.0 20 95-115 41-60 (315)
152 1nkp_B MAX protein, MYC proto- 21.6 1.1E+02 0.0039 23.2 4.5 39 260-302 39-77 (83)
153 3a2a_A Voltage-gated hydrogen 21.4 34 0.0012 25.3 1.2 20 367-386 11-30 (58)
154 2wvr_A Geminin; DNA replicatio 21.3 2E+02 0.007 26.4 6.7 50 256-310 94-146 (209)
155 2q6q_A Spindle POLE BODY compo 21.2 2.8E+02 0.0095 21.3 6.3 36 278-313 23-58 (74)
156 3i00_A HIP-I, huntingtin-inter 21.0 3.6E+02 0.012 22.4 8.4 44 281-324 35-78 (120)
157 3nmd_A CGMP dependent protein 20.9 2.9E+02 0.01 21.3 6.6 19 302-320 49-67 (72)
158 2i1j_A Moesin; FERM, coiled-co 20.8 1.3E+02 0.0043 31.4 6.0 47 278-324 334-380 (575)
159 2cly_A ATP synthase B chain, m 20.8 4.8E+02 0.017 23.8 9.3 53 268-320 88-142 (214)
160 2w6a_A ARF GTPase-activating p 20.8 1.1E+02 0.0039 22.9 4.0 28 272-299 34-61 (63)
161 3etv_A Protein transport prote 20.7 2.6E+02 0.0088 27.7 7.7 30 342-373 82-111 (355)
162 2xdj_A Uncharacterized protein 20.6 3.1E+02 0.011 21.4 7.9 35 280-314 21-55 (83)
163 2xus_A Breast cancer metastasi 20.2 2.2E+02 0.0074 20.4 5.3 35 285-321 12-46 (49)
164 3qne_A Seryl-tRNA synthetase, 20.1 6.5E+02 0.022 25.7 11.0 87 254-365 12-104 (485)
No 1
>2dwk_A Protein RUFY3; RUN domain, effector, RAP2, bundle, protein binding, structural genomics, NPPSFA; 2.00A {Mus musculus} PDB: 2dwg_A 2cxf_A 2cxl_A
Probab=100.00 E-value=2.2e-49 Score=361.56 Aligned_cols=177 Identities=56% Similarity=0.938 Sum_probs=158.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCCChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHhhC
Q psy1888 58 ARNPVIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKKGLLGPKKELWDILQLVEKLN 137 (386)
Q Consensus 58 ~~~p~~ieR~NLl~~lK~sVK~LiE~~~~~~r~I~dd~~~L~~LC~~LE~iL~HGLK~k~~~~g~~~~fW~~l~~~~k~~ 137 (386)
.+||+.++|+||++++|.+||+|++++++.+++|+++++++++||.+||+||.||||.+.||||++++||++++.+.+.+
T Consensus 4 ~~~~~~~~r~~Ll~~~k~~VK~l~e~~~~~~~~i~~~~~~l~~LC~~lE~iL~HGLK~~~~~l~~~~~~W~~l~~~~~~~ 83 (180)
T 2dwk_A 4 GSSGMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLV 83 (180)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHCSCBCTTCHHHHHHHHHHHHHHHTTBCC-------CCTTHHHHHHHHHHC
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHcCCCCccccCCCCCcHHHHHHHHHhhC
Confidence 47889999999999999999999999988889999999999999999999999999999899999999999999999999
Q ss_pred CcccchhhhhccCCCCCCccchhHHHHHHHHhhhhHHHHHHHHHhCchhHHHhcccccCccCCccHHHHHHhhcccccee
Q psy1888 138 PEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVID 217 (386)
Q Consensus 138 P~~~d~i~~I~~L~~I~T~~GRgRAWIRlAL~eK~Ls~yL~~Ll~n~~~lL~~~Ye~~AlL~d~E~~vL~~lL~GLn~Id 217 (386)
|.+.++++.|+++++|+|++||||||||+|||+|+|+.||+.+++++ .++++||++||||+|+|+.+|.++|+||++|+
T Consensus 84 p~~~~~~~~v~~l~~i~T~~Gr~RawIR~aL~ek~L~~~l~~l~~~~-~~l~~~Y~~~All~~~e~~~l~~~L~gL~~v~ 162 (180)
T 2dwk_A 84 PEAAEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKK-ELLSEFYEVNALMMEEEGAIIAGLLVGLNVID 162 (180)
T ss_dssp GGGHHHHHHHHTCTTCCSHHHHHHHHHHHHHHHTCHHHHHHHHHTCH-HHHTTTBCTTSGGGSHHHHHHHHHGGGGGGCC
T ss_pred ccHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHHHHHhCh-HHHHhhCCCCccccCccHHHHHHHHhCcccee
Confidence 98889999999999999999999999999999999999999999998 89999999999999998899999999999999
Q ss_pred cccccCCCCCCCCCcccc
Q psy1888 218 CNLCVKEEDLDCQQGVID 235 (386)
Q Consensus 218 F~l~lk~~~LD~~~~vId 235 (386)
|++++|+++||++++|||
T Consensus 163 F~l~~~~~~LD~~~~~~~ 180 (180)
T 2dwk_A 163 ANFCMKGEDLDSQVGVID 180 (180)
T ss_dssp BCSSCCHHHHCCCC----
T ss_pred eeeeCChhhhCCCCcCCC
Confidence 999999999999999998
No 2
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus}
Probab=99.97 E-value=4.1e-32 Score=272.98 Aligned_cols=189 Identities=21% Similarity=0.364 Sum_probs=148.5
Q ss_pred CCCCCCCCcccCCChhHHHHHH------HHHHHHHHHHHHHHHhhhcCCcc-----------cCCChHHHHHHHHHHHHH
Q psy1888 47 RSPSPEPPLFVARNPVIIERRN------LVNISKLIVKELIETSQKHGRML-----------DSDHMPLQHFFIVLEHVL 109 (386)
Q Consensus 47 ~~~~~~~~~~~~~~p~~ieR~N------Ll~~lK~sVK~LiE~~~~~~r~I-----------~dd~~~L~~LC~~LE~iL 109 (386)
.++..++++.++.+|+.++++| |+..||..||.++-++.+. +.+ +++++.++.||.+||+||
T Consensus 20 ~~~~~~~~~~~~~~p~~~~q~n~~f~e~ll~e~~~~~K~~l~~~~g~-ea~~lg~~~~~v~~~ee~t~v~~LC~~LE~il 98 (384)
T 3cwz_B 20 MGSTIRQPKLSNLSPSVIAQTNWKFVEGLLKECRNKTKRMLVEKMGR-EAVELGHGEVNITGVEENTLIASLCDLLERIW 98 (384)
T ss_dssp -----------CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSCCC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccccccccccccccccHHHHHHHHHHHHHH
Confidence 3466778888899999999998 9999999999987555542 233 356677999999999999
Q ss_pred hcCCCCCCCCCCCCCCchHHHHHHHhh----------------------CCc-----------ccchhhhhccCCCCCCc
Q psy1888 110 RHGLKPKKGLLGPKKELWDILQLVEKL----------------------NPE-----------ASDITASVRDLPTVKTH 156 (386)
Q Consensus 110 ~HGLK~k~~~~g~~~~fW~~l~~~~k~----------------------~P~-----------~~d~i~~I~~L~~I~T~ 156 (386)
+||||.+.| ++.||+++..+... .|. +...+++|.+|++|+|+
T Consensus 99 ~HGLk~k~g----ks~lW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~i~~l~~i~T~ 174 (384)
T 3cwz_B 99 SHGLQVKQG----KSALWSHLLHYQENRQRKLTSGSLSTSGILLDSERRKSDASAVMSPLRISLIQDMRHIQNIGEIKTD 174 (384)
T ss_dssp HSSBCCCSS----SCHHHHHHHHHHHHHHHCC----------------------CCCCCCCCCHHHHHHHHHTCTTCCSH
T ss_pred Hhhcccccc----chHHHHHHHHHHhhhhcccccccccccccccCccccccccccccccchhhhHHHHHHHhccCcccCC
Confidence 999999876 68899999876321 010 12356889999999999
Q ss_pred cchhHHHHHHHHhhhhHHHHHHHHHhCchhHHHhcccccCccCCccH-HHHHHhhccccceecccccCCCCCCCCCcccc
Q psy1888 157 MGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEA-IVILGKLLSLNVIDCNLCVKEEDLDCQQGVID 235 (386)
Q Consensus 157 ~GRgRAWIRlAL~eK~Ls~yL~~Ll~n~~~lL~~~Ye~~AlL~d~E~-~vL~~lL~GLn~IdF~l~lk~~~LD~~~~vId 235 (386)
+||||||||+|||+|.|++||+.++.++ +++++||+++|||+++|. .+|+..|+||++++|+.+.++ .++..+.
T Consensus 175 ~GrgRAWiRlaLne~~L~~yL~~ll~~~-~~l~~~Y~~~A~L~~~Ee~~~il~~L~gLn~vDf~~f~~~----~Ttt~~~ 249 (384)
T 3cwz_B 175 VGKARAWVRLSMEKKLLSRHLKQLLSDH-ELTKKLYKRYAFLRCDDEKEQFLYHLLSFNAVDYFCFTNV----FTTILIP 249 (384)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTCH-HHHHHHBCTTSTTTCHHHHHHHHHHHGGGGSSCCCTTTTT----CTTSEEE
T ss_pred CcchhHHHHHHHhcchHHHHHHHHHhCc-hhhhhhcccchhhcCcchhhhhhhhcccccccchhhcccc----cccccee
Confidence 9999999999999999999999999997 899999999999997775 899999999999999755542 3467899
Q ss_pred chhhhhccCC
Q psy1888 236 FSLYLRSACY 245 (386)
Q Consensus 236 ~s~yl~~~~~ 245 (386)
|.+++.-|++
T Consensus 250 Y~V~V~TG~~ 259 (384)
T 3cwz_B 250 YHILIVPSKK 259 (384)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEeCCC
Confidence 9999997743
No 3
>4giw_A RUN and SH3 domain-containing protein 1; NGF-TRKA signaling pathway, NF-KB pathway, signaling protein; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.3e-28 Score=225.61 Aligned_cols=161 Identities=16% Similarity=0.261 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-----CCC--h-----HHHHHHHHHHHHHhcCCCCCCC--CCCC-CCCc
Q psy1888 62 VIIERRNLVNISKLIVKELIETSQKHGRMLD-----SDH--M-----PLQHFFIVLEHVLRHGLKPKKG--LLGP-KKEL 126 (386)
Q Consensus 62 ~~ieR~NLl~~lK~sVK~LiE~~~~~~r~I~-----dd~--~-----~L~~LC~~LE~iL~HGLK~k~~--~~g~-~~~f 126 (386)
...+|++|+..++.||+.++..+.+...++. |+. + .++.||.+||+||.||||.+.+ +.|+ +++|
T Consensus 4 ~~e~k~~ll~~l~~aV~~i~~~f~~~~~~~~~~~~gd~~~~~~i~~lvl~~LC~aLe~iL~HGLk~~~~~~~~g~~~~~~ 83 (198)
T 4giw_A 4 LQEQKKGLLIAVSVSVDKIISHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSP 83 (198)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHBTTTCHHHHHHHHHTHHHHHHHHHHTTBCSEEEETTTEEEECCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcccCcchHHHHHHHHHHHHHHHHHcCCccCCcccccccccCCh
Confidence 3457889999999999999988866433322 221 1 2568999999999999998642 3443 5699
Q ss_pred hHHHHHHHhhCCcc---cchhhhhccCCCCCCccchhHHHHHHHHhhhhHHHHHHHHHhCchhHHHhcccccCccC----
Q psy1888 127 WDILQLVEKLNPEA---SDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLM---- 199 (386)
Q Consensus 127 W~~l~~~~k~~P~~---~d~i~~I~~L~~I~T~~GRgRAWIRlAL~eK~Ls~yL~~Ll~n~~~lL~~~Ye~~AlL~---- 199 (386)
|++++.+.+..|.. .++++.|.++++++|+.||+|||||+|||+++|+.||..++.++ .++.+||+|||||+
T Consensus 84 W~~ie~~~~~~~~~~~~~~~v~~i~~l~~l~t~~gr~RA~ir~aLn~~~L~~~l~~l~~~~-~~l~~~Y~~~a~lr~s~~ 162 (198)
T 4giw_A 84 WSVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQEDA-GLLSLMYMPTGFFSLARG 162 (198)
T ss_dssp HHHHHHHC-----CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTCHHHHHHHHHTCH-HHHHHHBCTTSHHHHTSS
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHccccccCcchHHHHHHHHHHHHCHHHHHHHHHHhCh-HHHHHHcCCchHhhcccc
Confidence 99999988766643 47789999999999999999999999999999999999999998 89999999999998
Q ss_pred -CccH-HHHHHhhccccceecccccC
Q psy1888 200 -SDEA-IVILGKLLSLNVIDCNLCVK 223 (386)
Q Consensus 200 -d~E~-~vL~~lL~GLn~IdF~l~lk 223 (386)
+++. ..|+.+|.+|+.+.|+|+++
T Consensus 163 ~~~~l~~~l~~~L~~L~~l~F~Ldl~ 188 (198)
T 4giw_A 163 GCPSLSTELLLLLQPLSVLTFHLDLL 188 (198)
T ss_dssp BTTBHHHHHHHHHGGGGGSCCBCCTT
T ss_pred cChHHHHhhhcccccccccceecchh
Confidence 4565 88999999999999999884
No 4
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=95.75 E-value=0.14 Score=44.46 Aligned_cols=94 Identities=23% Similarity=0.350 Sum_probs=47.6
Q ss_pred HHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHH-HHHHHHHHHHHHH
Q psy1888 281 VGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEV-AMKLLERDVHQKQ 359 (386)
Q Consensus 281 ~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~-a~kllekd~~ekq 359 (386)
+.+-|-|+|.+.+.|..-..|+...+.....+|.-.+.....++... ++ +-.+-+.+ -+.-||+|+.||-
T Consensus 41 L~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~--~q-------QnQQSlDiRKLrELEADLKEKD 111 (167)
T 4gkw_A 41 LREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNS--QQ-------QNQQSLDMRKLGELEADLKEKD 111 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------HHHHHHHHHHTHHHHHTHHHHH
T ss_pred HHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh--HH-------HhHhhhhHHHHHHHHhHHhhhh
Confidence 33456666777666666666655444444444444333322221100 00 01111222 1345677777763
Q ss_pred -------HHHHHHHHHHHHHhH---hHHHHHHHh
Q psy1888 360 -------DTIIELRRQLEDIKM---INLEMYKKL 383 (386)
Q Consensus 360 -------dt~~~lr~ql~~~k~---in~~~~~~~ 383 (386)
.||-.||+.|+|-|- =+++-|.++
T Consensus 112 sMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~L 145 (167)
T 4gkw_A 112 SMVESLTETIGILRKELENEKLKAAENMDSFEKL 145 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577789999998663 344555554
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.74 E-value=0.29 Score=44.78 Aligned_cols=118 Identities=16% Similarity=0.239 Sum_probs=91.5
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHH----HHHHHHHHHHHHHHHHHHHHHhhhccccccchhh
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMRED----LSIAEKNLRILIQENENLKNQLANSSQHTSNLSV 335 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~ee----l~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~ 335 (386)
|+.+=+.-.|.-++......++.+++..++....+...+..| |..+..++..|+..+.+++.|....+.+.+.
T Consensus 5 f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~--- 81 (189)
T 2v71_A 5 FSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH--- 81 (189)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 333444556887777778888888888888888887766544 5688889999999999999887776665433
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhh
Q psy1888 336 HEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEMYKKLQ 384 (386)
Q Consensus 336 ~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in~~~~~~~~ 384 (386)
.+.|...++--|++++..-+++...|+.++-++-.-|=++=.+.+
T Consensus 82 ----~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 82 ----QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 566777788889999999999999999999988888877765543
No 6
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=94.85 E-value=0.099 Score=54.31 Aligned_cols=105 Identities=19% Similarity=0.251 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH------HHhh-hcc---ccccchhhhhhc
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK------NQLA-NSS---QHTSNLSVHEVG 339 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~------~e~~-~~~---~~~~~el~~q~~ 339 (386)
|.+-+|-+...|++|..+++++.+. .+-.++.- ++....|++.+.+.. .|.+ ..| +.++.++.-|++
T Consensus 55 LdkqErDltkrINELKnqLEdlsKn-sKdseqy~--k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQls 131 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEYQKN-NKDSHSLT--TNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQ 131 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHH-HHHHHHHH--HHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHhh-chhHHHHH--HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777333 33333321 222222222222222 2221 111 112333444443
Q ss_pred chHHH-------HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhHhHH
Q psy1888 340 LKAEM-------EVAMKLLERDVHQKQD-----------------TIIELRRQLEDIKMINL 377 (386)
Q Consensus 340 ~k~e~-------e~a~kllekd~~ekqd-----------------t~~~lr~ql~~~k~in~ 377 (386)
..+-+ -.-||-||.||.-|-+ .-+.+.+||++|-++|+
T Consensus 132 nIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhccc
Confidence 33222 2348999999887754 57899999999999987
No 7
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.70 E-value=0.15 Score=40.74 Aligned_cols=57 Identities=25% Similarity=0.287 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
-+|+.....=.+++-||..+++|+..|..+..+.+.|++....|..|+++|++|-..
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 366666666777888999999999999999999999999999999999999987654
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.64 E-value=0.14 Score=52.60 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1888 346 VAMKLLERDVHQKQDTIIELRRQLEDIKM 374 (386)
Q Consensus 346 ~a~kllekd~~ekqdt~~~lr~ql~~~k~ 374 (386)
..+.-||+.+.+.++.+..++|+..+.++
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 33445666666666666666666665544
No 9
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=94.42 E-value=0.11 Score=37.96 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=38.3
Q ss_pred HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1888 278 NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENL 319 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l 319 (386)
+..+.+|+.+++.+.+.|.++.+-|..|+..|..|.+|++.|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678899999999999999999999999999999999876
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.55 E-value=0.44 Score=53.61 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhH
Q psy1888 363 IELRRQLEDIKM 374 (386)
Q Consensus 363 ~~lr~ql~~~k~ 374 (386)
..||||++|+..
T Consensus 1033 ~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1033 TLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 367777777763
No 11
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.54 E-value=0.61 Score=39.27 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=20.3
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHH
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSI 304 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~ 304 (386)
-++++.+|+.+|+++...|+++.-|+.-
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn 45 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDN 45 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888887655553
No 12
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.57 E-value=1.8 Score=38.39 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy1888 344 MEVAMKLLERDVHQKQDTIIELRRQLEDIKMI 375 (386)
Q Consensus 344 ~e~a~kllekd~~ekqdt~~~lr~ql~~~k~i 375 (386)
.|.-..-|++.+++|.--|.+|..||.++|.+
T Consensus 113 ~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 113 IEILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446788899999999999999999999975
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.66 E-value=1.8 Score=40.56 Aligned_cols=32 Identities=9% Similarity=0.103 Sum_probs=12.3
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHH
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQE 315 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e 315 (386)
++..++.++.+-.+...+++.++.+|...+..
T Consensus 51 ~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~ 82 (256)
T 3na7_A 51 LEEEKLALKLQVSKNEQTLQDTNAKIASIQKK 82 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 14
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.10 E-value=6.4 Score=36.69 Aligned_cols=44 Identities=7% Similarity=0.049 Sum_probs=21.0
Q ss_pred HHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 281 VGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 281 ~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
...+...++.++..-..++..++.++..+.++..+...+..+..
T Consensus 27 ~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~ 70 (256)
T 3na7_A 27 IREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ 70 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444445555555554444444444
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.50 E-value=0.8 Score=51.55 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHhHhHhhhHHhH
Q psy1888 274 NRHLNATVGNLQTQVESLTTTNALMR 299 (386)
Q Consensus 274 nr~l~~~~~~l~~~~~~l~~~n~~~~ 299 (386)
+..|++.|.+||.+++..++.|..+.
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~ 948 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLL 948 (1080)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544443
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.12 E-value=1.7 Score=44.47 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=51.2
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------ccccc
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSS-------QHTSN 332 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~-------~~~~~ 332 (386)
+...-.-..|.+++..-.......+++.+..++.....+++++......+...+++....++...... +.+++
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~ 509 (597)
T 3oja_B 430 INSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNK 509 (597)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHH
Confidence 44445555666666664444444455566666666666666666655666666666666555444222 22333
Q ss_pred hhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy1888 333 LSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMI 375 (386)
Q Consensus 333 el~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~i 375 (386)
+...--...++++...+-+++++.+|+..+..++++.++++..
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 552 (597)
T 3oja_B 510 VFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQ 552 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHH
Confidence 3333333444455566777777777777777554444444443
No 17
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.12 E-value=2.8 Score=42.07 Aligned_cols=113 Identities=23% Similarity=0.285 Sum_probs=59.7
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhhHH-----------hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcc
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTNAL-----------MREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGL 340 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n~~-----------~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~ 340 (386)
+.+|-+...+..|...|+.+..++.. +++-++-|+++=....+-.+.|++........+..-+..--.|
T Consensus 60 k~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~L 139 (390)
T 1deq_A 60 EVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLL 139 (390)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44477777777777777777665543 2444444444444444444444444444434333322211122
Q ss_pred hHHH---HHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHhHhHHHHHHHhh
Q psy1888 341 KAEM---EVAMKLLERDVHQK-----------------QDTIIELRRQLEDIKMINLEMYKKLQ 384 (386)
Q Consensus 341 k~e~---e~a~kllekd~~ek-----------------qdt~~~lr~ql~~~k~in~~~~~~~~ 384 (386)
+.-+ -.-||-||.||.-+ .+.-....+||+.+.++|+.-..+.|
T Consensus 140 q~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv~a~~llP~~~~q 203 (390)
T 1deq_A 140 QKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQVIAINLLPSRDIQ 203 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHhhhhhccccccccc
Confidence 2222 22466677765221 23345567789999999886655544
No 18
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=87.61 E-value=1.1 Score=31.40 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy1888 307 KNLRILIQENENLKN 321 (386)
Q Consensus 307 ~~i~~lq~e~~~l~~ 321 (386)
.+|..||.||..||+
T Consensus 24 ervstLq~EN~mLRq 38 (42)
T 2oqq_A 24 ERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHH
Confidence 467788888888875
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.50 E-value=3.9 Score=35.30 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=54.6
Q ss_pred ccchhHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 256 VEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 256 ~~~~~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
-+..-.+||..-|...|+.... .+...|..+++.+.++...+|++|..++..+.++..+++.++.++..
T Consensus 53 l~~~r~aVLaALNiadEl~k~~-~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~ 121 (138)
T 3hnw_A 53 MSAELRTDMMYLNIADDYFKAK-KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINK 121 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778889999999987644 45777888888888888888999888888888888888888776554
No 20
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.20 E-value=3.1 Score=33.12 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=17.3
Q ss_pred HHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 281 VGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 281 ~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
+.+|+.+|+++...|+.+.-|+.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~d 24 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERD 24 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 46788888888888887755544
No 21
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=86.30 E-value=3.6 Score=32.54 Aligned_cols=71 Identities=31% Similarity=0.387 Sum_probs=45.4
Q ss_pred HHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHH
Q psy1888 276 HLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDV 355 (386)
Q Consensus 276 ~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~ 355 (386)
+|+++...+.+|+++++..|+.+++.+.-++..+.+-+.+.. .+++|+..++..|-=.|
T Consensus 3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~---------------------~~~~Elk~l~e~Ld~KI 61 (79)
T 3cvf_A 3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERE---------------------RARAEVGRAAQLLDVSL 61 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhhHH
Confidence 577788888999999999999998877766666655555443 36677777887776555
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1888 356 HQKQDTIIELRRQLED 371 (386)
Q Consensus 356 ~ekqdt~~~lr~ql~~ 371 (386)
+ -+-.||+.|.-
T Consensus 62 ~----eL~elRqgLak 73 (79)
T 3cvf_A 62 F----ELSELREGLAR 73 (79)
T ss_dssp H----HHHHHHHHHHH
T ss_pred H----HHHHHHHHHHH
Confidence 4 45566776653
No 22
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=86.03 E-value=0.81 Score=43.50 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=38.7
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 280 TVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
.+.+|+.+++.+...|.+++++|..|+..|..|++|++.|++
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 477899999999999999999999999999999999999873
No 23
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.69 E-value=6.1 Score=33.09 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHhHHH---HHHHHhHhHhhh
Q psy1888 268 NYIEELNRHLNATVGN---LQTQVESLTTTN 295 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~---l~~~~~~l~~~n 295 (386)
.|+++|.+.+.+.-.+ ++.+++.+....
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~ 50 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDI 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666433322 444444444443
No 24
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=85.04 E-value=3.9 Score=30.73 Aligned_cols=48 Identities=23% Similarity=0.454 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
.|+| +...+..-.+||+.|-+-|..+.+||..-...|.+||.||..||
T Consensus 14 eyle-----vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 14 EYLE-----LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 4666 45556666889999999999999999988888889999888876
No 25
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.99 E-value=4.6 Score=36.81 Aligned_cols=107 Identities=15% Similarity=0.242 Sum_probs=51.8
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhccccc---cc---hh
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTNALMREDLSIAE-----------KNLRILIQENENLKNQLANSSQHT---SN---LS 334 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~-----------~~i~~lq~e~~~l~~e~~~~~~~~---~~---el 334 (386)
||-.-|+.+|..+..+...|...|..++.|+..++ ..|..||.|++.++..+......+ |. .|
T Consensus 42 ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 42 ELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45566667777766666666666666666655433 336777777777776655322211 11 12
Q ss_pred h------------hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy1888 335 V------------HEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEM 379 (386)
Q Consensus 335 ~------------~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in~~~ 379 (386)
| ++..+-+.||. .-|||-++.||..--+...+=-|+++.+..++
T Consensus 122 Er~~R~~~~SleD~e~kln~aiEr-~alLE~El~EKe~l~~~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 122 ERAKRATIMSLEDFEQRLNQAIER-NAFLESELDEKESLLVSVQRLKDEARDLRQEL 177 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCC--------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 12223333333 25789999998844333333334444444443
No 26
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=84.20 E-value=2.5 Score=32.97 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=28.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy1888 339 GLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMI 375 (386)
Q Consensus 339 ~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~i 375 (386)
..|.+ -++-||+.+.||-+.|..||.+|+..+++
T Consensus 36 r~kd~---~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 36 RQRDA---LIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555 37999999999999999999999988764
No 27
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.91 E-value=14 Score=32.99 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=17.5
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
++..+..++..+..+.+-+....+.-.+|+.++..|..++.
T Consensus 39 l~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 39 MSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444443
No 28
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=83.70 E-value=8.3 Score=39.56 Aligned_cols=107 Identities=15% Similarity=0.231 Sum_probs=60.9
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhhH-----------HhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcc
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTNA-----------LMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGL 340 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n~-----------~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~ 340 (386)
+-+|-....|.+|..+|+++...+. .+++-++-++++=....+-...|+.......+.+..-+..--.|
T Consensus 58 kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvL 137 (491)
T 1m1j_A 58 DTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKAL 137 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544432 23444555555555555555555544444444444333211123
Q ss_pred hHHHH---HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhHhHHH
Q psy1888 341 KAEME---VAMKLLERDVHQKQD-----------------TIIELRRQLEDIKMINLE 378 (386)
Q Consensus 341 k~e~e---~a~kllekd~~ekqd-----------------t~~~lr~ql~~~k~in~~ 378 (386)
+.-++ .-||-||.||.-+-+ .-..+.+||+.+-++|+.
T Consensus 138 q~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y~VD~~~Ye~~QKqLeQv~a~dL~ 195 (491)
T 1m1j_A 138 QNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHLTQASSIDMH 195 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSCCCCCCCTTTTHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHhhhcHHHHHHHHHHHHHhhccccC
Confidence 33333 358999999887765 357799999999988864
No 29
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.29 E-value=4.1 Score=35.31 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=49.1
Q ss_pred HHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhh---c-
Q psy1888 264 LDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEV---G- 339 (386)
Q Consensus 264 ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~---~- 339 (386)
--++.-+.++++. ...+..++..+.........+..+|+..+..-.+...+...+..|.....-.+=.|--.+| .
T Consensus 18 ~~~~~~~~~le~l-~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~ 96 (135)
T 2e7s_A 18 ASQKAAIENYNQL-KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARM 96 (135)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555552 2355556666666666666666665544444444444444444333321111000000000 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy1888 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMI 375 (386)
Q Consensus 340 ~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~i 375 (386)
-.+..|.-..-|++.+++|.--|.++..||.+.|.+
T Consensus 97 ~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 97 EKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123345556789999999999999999999999864
No 30
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=82.07 E-value=15 Score=30.73 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=32.3
Q ss_pred HHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 273 LNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 273 lnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
.+|.|...+..|...++++. .|.+..-..+...|..||.|++.++.++..
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k---~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~ 53 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALK---EKLEHQYAQSYKQVSVLEDDLSQTRAIKEQ 53 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666665 333344445566788899998888887764
No 31
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=81.99 E-value=1.4 Score=33.83 Aligned_cols=43 Identities=28% Similarity=0.347 Sum_probs=30.5
Q ss_pred chhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q psy1888 332 NLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINL 377 (386)
Q Consensus 332 ~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in~ 377 (386)
.++--.+..|.| -|.-||+++.+|.+.|..||.||+.+.++.-
T Consensus 14 e~~~~~i~~Kde---~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 14 EDFAKILMLKEE---RIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp ---CHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445556666 5788999999999999999999999887753
No 32
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.07 E-value=6.6 Score=33.22 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=36.1
Q ss_pred hHHHHHHHHhHhHhhhHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHH
Q psy1888 280 TVGNLQTQVESLTTTNALMRED-----------LSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAM 348 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~ee-----------l~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~ 348 (386)
++..|+.+++++...+..+... +.-++..|..|..++.++|.+......+-.. =+.|+|.=++|.|-
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~--Ll~vKl~Ld~EIat 123 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKI--LLDVKTRLEQEIAT 123 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4444555555555555444333 3344556666666666666554432222111 12345556666654
Q ss_pred --HHHH
Q psy1888 349 --KLLE 352 (386)
Q Consensus 349 --klle 352 (386)
||||
T Consensus 124 YRkLLE 129 (131)
T 3tnu_A 124 YRRLLE 129 (131)
T ss_dssp HHHHTT
T ss_pred HHHhHC
Confidence 7776
No 33
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.32 E-value=6.8 Score=33.00 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=37.4
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDL-----------SIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVA 347 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel-----------~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a 347 (386)
.++..|+.+++++...+..+...| .-++..|..|..++.++|.+......+-.. =+.|+|.=++|.|
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~--LlnvKl~Ld~EIa 120 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQE--LMNTKLALDVEIA 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 345556666666666666554443 344555666666666666554432221111 1234455556655
Q ss_pred H--HHHH
Q psy1888 348 M--KLLE 352 (386)
Q Consensus 348 ~--klle 352 (386)
- ||||
T Consensus 121 tYRkLLE 127 (129)
T 3tnu_B 121 TYRKLLE 127 (129)
T ss_dssp HHHHTTC
T ss_pred HHHHhHC
Confidence 3 6665
No 34
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=79.73 E-value=15 Score=32.92 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=45.4
Q ss_pred HHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHh-------HHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-------
Q psy1888 264 LDQKNYIEELNRHLNATVGNLQTQVESLTTTNALM-------REDLSIAEKNLRILIQENENLKNQLANSSQH------- 329 (386)
Q Consensus 264 ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~-------~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~------- 329 (386)
--+..-+|..+|-|...+..|+..-+.|++....+ +.....+...|.+|+..+..|..|....+..
T Consensus 40 ~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e 119 (168)
T 3o0z_A 40 SKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGE 119 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666555555555444444444444333 3333344455555555555555554432221
Q ss_pred ----------ccch-hhhhhcchHHHHHHHHHHHHHHHHHHHH
Q psy1888 330 ----------TSNL-SVHEVGLKAEMEVAMKLLERDVHQKQDT 361 (386)
Q Consensus 330 ----------~~~e-l~~q~~~k~e~e~a~kllekd~~ekqdt 361 (386)
+||| -.++|-|--|+..+=.-+|.++.+=++|
T Consensus 120 ~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~H~~T 162 (168)
T 3o0z_A 120 RKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVT 162 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2332 1123333344444455666666666665
No 35
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=79.38 E-value=21 Score=28.69 Aligned_cols=91 Identities=18% Similarity=0.224 Sum_probs=47.9
Q ss_pred HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh--------ccccccchhhhhhcchHHHHHHHH
Q psy1888 278 NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN--------SSQHTSNLSVHEVGLKAEMEVAMK 349 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~--------~~~~~~~el~~q~~~k~e~e~a~k 349 (386)
-++...++.+++.+..+-..+..++..++.. .+|+..+...... ...+++.-.+.=-..+..++..++
T Consensus 12 i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~----~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~ 87 (117)
T 2zqm_A 12 LGQLESYQQQLQLVVQQKQKVQLELTEAKKA----LDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLN 87 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655555555443333 3333333321110 001111111111135566777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 350 LLERDVHQKQDTIIELRRQLEDI 372 (386)
Q Consensus 350 llekd~~ekqdt~~~lr~ql~~~ 372 (386)
-||+.+...+..+..++.+|...
T Consensus 88 ~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 88 ALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777777777653
No 36
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=78.65 E-value=5.5 Score=44.99 Aligned_cols=11 Identities=27% Similarity=0.262 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q psy1888 73 SKLIVKELIET 83 (386)
Q Consensus 73 lK~sVK~LiE~ 83 (386)
.|.++..||+.
T Consensus 662 f~~~l~~L~~~ 672 (1184)
T 1i84_S 662 YKEQLTKLMTT 672 (1184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555566654
No 37
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=77.49 E-value=6.8 Score=44.27 Aligned_cols=7 Identities=14% Similarity=0.819 Sum_probs=2.8
Q ss_pred cchhHHH
Q psy1888 157 MGRARAW 163 (386)
Q Consensus 157 ~GRgRAW 163 (386)
+|+.+.|
T Consensus 768 iG~TKVF 774 (1184)
T 1i84_S 768 IGQSKIF 774 (1184)
T ss_dssp BCSSEEE
T ss_pred EcCeEEE
Confidence 3444333
No 38
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=77.18 E-value=7.2 Score=32.12 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=19.9
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
.++..|..+|++|+.+|..++++.+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888888888877754
No 39
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=77.13 E-value=3.2 Score=27.01 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhh
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTT 294 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~ 294 (386)
.+||=.|.|++-|..||.++|-++.+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999876
No 40
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=74.90 E-value=29 Score=27.40 Aligned_cols=87 Identities=11% Similarity=0.187 Sum_probs=47.8
Q ss_pred HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------ccccccchhhhhhcchHHHHH
Q psy1888 278 NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN-----------SSQHTSNLSVHEVGLKAEMEV 346 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~-----------~~~~~~~el~~q~~~k~e~e~ 346 (386)
-++...++.++..+..+-..+..++..++.. .+|+..+-+.... ...++...|+ ..+..++.
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~----~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~---~~~e~i~~ 79 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKA----LEELSRAADDAEVYKSSGNILIRVAKDELTEELQ---EKLETLQL 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHH---HHHHHHHH
Confidence 3455666777777776655555555543333 3334334321110 0011122222 35556777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 347 AMKLLERDVHQKQDTIIELRRQLED 371 (386)
Q Consensus 347 a~kllekd~~ekqdt~~~lr~ql~~ 371 (386)
.++-||+.+...+..+..++.+|..
T Consensus 80 ~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 80 REKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887777777653
No 41
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=73.61 E-value=5.4 Score=30.75 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=27.6
Q ss_pred HHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1888 264 LDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENL 319 (386)
Q Consensus 264 ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l 319 (386)
..|..|=|= -+.-+.+|..++..++..|..+..|-..-+..|..|+.|+..+
T Consensus 18 ~AQRafReR----K~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 18 AAQRAFRKR----KEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456666541 1344555566666666655555444444444555666666544
No 42
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=71.89 E-value=23 Score=27.95 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHH
Q psy1888 267 KNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIA 305 (386)
Q Consensus 267 K~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a 305 (386)
---+|..|.-|+.+|..|+.++++-.......+.||.-+
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888899999999888888887777777776643
No 43
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.59 E-value=29 Score=34.39 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=23.3
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHH
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENEN 318 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~ 318 (386)
||.+|+.+++.-.....+-.-++-.++.||+-++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDA 436 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHH
Confidence 66667766666666666666667777777775544
No 44
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=70.82 E-value=18 Score=29.83 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=27.0
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
|..+++.++++|..+...-.....+|.+|+.|+.+|+.||..
T Consensus 42 LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~ 83 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQ 83 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 556666666666666554444455777777777777776654
No 45
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=70.50 E-value=35 Score=26.41 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
-+|..|.-|+.+|..|+.+++.-.......+.||.
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk 45 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544444444443
No 46
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=69.31 E-value=21 Score=30.73 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=15.7
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
++.+.+.++.+...+.+|+..-+..+.++|.+++.++
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~ 109 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSA 109 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 47
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=68.86 E-value=22 Score=27.95 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=32.7
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
-|.|.+.-.+..-|+.++++..+...+++==..-+..|..|+.|-..+..
T Consensus 11 KLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ 60 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 36778888899999999999998555543333333455555555555443
No 48
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=68.85 E-value=9.4 Score=28.07 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=26.5
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 280 TVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQ 322 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e 322 (386)
-+..|+.+++.++..|..+..++ ..|++|+..|++.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i-------~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEV-------TLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 35668888888888888886554 4677777777653
No 49
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=68.46 E-value=6.8 Score=31.79 Aligned_cols=17 Identities=47% Similarity=0.692 Sum_probs=10.0
Q ss_pred hhcchHHHHHHH--HHHHH
Q psy1888 337 EVGLKAEMEVAM--KLLER 353 (386)
Q Consensus 337 q~~~k~e~e~a~--kllek 353 (386)
.|+++-|+|+|- ||||-
T Consensus 72 nvKl~Le~EIatYrkLLEG 90 (95)
T 3mov_A 72 DVKLALDMEISAYRKLLEG 90 (95)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 345566666654 77763
No 50
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=67.38 E-value=6 Score=36.07 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=13.9
Q ss_pred HhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 288 VESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 288 ~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
|..|..+|..+.++|+.+...|..||+++..++
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443
No 51
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=67.29 E-value=32 Score=24.71 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=36.8
Q ss_pred HHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy1888 264 LDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENE 317 (386)
Q Consensus 264 ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~ 317 (386)
.+|++=+++.....+..+.....+++++...-..+.++|..++..|..++.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 4 ANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666677777777777777777777777777777777766543
No 52
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=67.07 E-value=12 Score=34.12 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=33.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy1888 296 ALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMI 375 (386)
Q Consensus 296 ~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~i 375 (386)
...+++|+.|..-|..|+.||..|.+++.....+++. ++.++ .-|+.++...+|. +.++++.+ .|
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~-------L~~ql----~sl~~~~~~~~~~---~~~~~e~i-~i 73 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQ-------LQKQI----DSLNAQVKELKTQ---TSQQAENS-EV 73 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH----HHHHHHHHHHHHH---HHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH----HHHHhhhhhhhhH---HHHHHHhh-hH
Confidence 4556777777777778888887777665543333222 33332 3445555444443 33454444 45
Q ss_pred HHHHHHHh
Q psy1888 376 NLEMYKKL 383 (386)
Q Consensus 376 n~~~~~~~ 383 (386)
-.+||.-+
T Consensus 74 ~~DL~e~L 81 (190)
T 4emc_A 74 IKDLYEYL 81 (190)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 56666544
No 53
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=66.94 E-value=14 Score=29.17 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHH--HHHHHH
Q psy1888 305 AEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAM--KLLERD 354 (386)
Q Consensus 305 a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~--kllekd 354 (386)
.+..|..+..++.++|.+......+-.. =+.|+++-|+|.|- ||||-+
T Consensus 33 ~q~~i~~lE~el~~~r~e~~~ql~EYq~--LlnvK~~Le~EIatYRkLLEGE 82 (86)
T 1x8y_A 33 SRRLLAEKEREMAEMRARMQQQLDEYQE--LLDIKLALDMEIHAYRKLLEGE 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHcCC
Confidence 3444555555555555443322111111 13455666777765 888854
No 54
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=66.91 E-value=42 Score=25.96 Aligned_cols=64 Identities=19% Similarity=0.366 Sum_probs=43.7
Q ss_pred HHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHH
Q psy1888 283 NLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTI 362 (386)
Q Consensus 283 ~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~ 362 (386)
.+.+|+++++..|..+++.+.-++..+.+-+.+.. .++.|+..++..|--.|+ -+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~---------------------~~~~Elk~~~e~Ld~KI~----eL 58 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQD---------------------AFRSNLKTLLEILDGKIF----EL 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH----HH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhhHHH----HH
Confidence 46788999999999988777766666655555443 366777777777765554 45
Q ss_pred HHHHHHHHH
Q psy1888 363 IELRRQLED 371 (386)
Q Consensus 363 ~~lr~ql~~ 371 (386)
-.||+.|.-
T Consensus 59 ~elrq~Lak 67 (72)
T 3cve_A 59 TELRDNLAK 67 (72)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 556776653
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=65.61 E-value=49 Score=26.20 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 349 KLLERDVHQKQDTIIELRRQLED 371 (386)
Q Consensus 349 kllekd~~ekqdt~~~lr~ql~~ 371 (386)
.-|..+.+..|+.|.+|=-.+++
T Consensus 58 ~qLk~E~~~wq~Rl~~LLgk~e~ 80 (81)
T 2jee_A 58 NHLKEQQNGWQERLQALLGRMEE 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 44555566667766666544443
No 56
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=64.73 E-value=9.3 Score=25.90 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=23.9
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 293 TTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 293 ~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
.+|.++-.+++.....|..|++||.+|+
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4678888888888889999999998886
No 57
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.20 E-value=28 Score=29.11 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 299 REDLSIAEKNLRILIQENENLKNQ 322 (386)
Q Consensus 299 ~eel~~a~~~i~~lq~e~~~l~~e 322 (386)
|+|+...+..|..|+-|+..++..
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~ 58 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 555555555666666666666543
No 58
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=63.62 E-value=42 Score=26.13 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHH--HHHHH
Q psy1888 305 AEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAM--KLLER 353 (386)
Q Consensus 305 a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~--kllek 353 (386)
++..|..+..++.++|.+......+-.. =+.|+++-|+|.|- ||||-
T Consensus 31 ~q~~i~~lE~eL~~~r~e~~~q~~EYq~--LlnvK~~Ld~EIatYRkLLEG 79 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEEMARHLREYQD--LLNVKMALDIEIATYRKLLEG 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHcC
Confidence 3445555555555555443322111111 12345666777764 88874
No 59
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=62.86 E-value=37 Score=26.50 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENL 319 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l 319 (386)
+||.+.+|+++|..||+|+.-|-.+.+.....|. .+|..|-......
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLK---qRit~LE~~~~~~ 51 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLK---QRLTKVEKFLKPL 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccc
Confidence 7999999999999999998776544433332222 2555555444433
No 60
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=62.83 E-value=38 Score=26.81 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=27.9
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENEN 318 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~ 318 (386)
..|++|.-||++++-+...-...|.+.|.-|..||+++..
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4566778888888776666666677777677777776654
No 61
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=62.41 E-value=39 Score=26.50 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=35.7
Q ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 261 SLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 261 ~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
..++.+..-+-+.-.-++-.-++|-+|+|+|.-++.-+++|+.+-......+++.+..+.+
T Consensus 12 EnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 12 ENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334333333343344455556688999999988888888888766666666554444433
No 62
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=62.10 E-value=17 Score=25.38 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHH
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMRE 300 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~e 300 (386)
+|...+.|+...++|..|+..|+.+|..+..
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455677788888888888888888887743
No 63
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=61.73 E-value=60 Score=25.92 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=16.7
Q ss_pred hhHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHh
Q psy1888 259 NMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTT 293 (386)
Q Consensus 259 ~~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~ 293 (386)
+|..+-|.-.-.=+.+|+||.+-+.|.++++.+..
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444333322224555555555555555555543
No 64
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=61.58 E-value=28 Score=27.74 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHhH
Q psy1888 268 NYIEELNRHLNATV 281 (386)
Q Consensus 268 ~ylEElnr~l~~~~ 281 (386)
+|-+++--.+..-|
T Consensus 28 ~YWk~lAE~RR~AL 41 (83)
T 1uii_A 28 QYWKEVAEKRRKAL 41 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57776665554444
No 65
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.35 E-value=23 Score=29.81 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 299 REDLSIAEKNLRILIQENENLKNQ 322 (386)
Q Consensus 299 ~eel~~a~~~i~~lq~e~~~l~~e 322 (386)
|.|+...+..|..|+-|+..++..
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~ 60 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSM 60 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555666666666665543
No 66
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=60.10 E-value=8.7 Score=28.39 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=25.0
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
..+.+|+.+++.|+.+|..++.++ ..|++|+..|++
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v-------~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTA-------NMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 345668888888888888885554 467777777664
No 67
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.22 E-value=44 Score=29.43 Aligned_cols=53 Identities=25% Similarity=0.306 Sum_probs=34.3
Q ss_pred HHHHHHHHH----HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 269 YIEELNRHL----NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 269 ylEElnr~l----~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
-||+|--.| +..|.+-...-..++.-|..++++|..+...|..+|.++..||.
T Consensus 87 ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 87 EVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 24455555555666777777777777777777778887777764
No 68
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=55.64 E-value=34 Score=24.88 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=25.5
Q ss_pred HHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1888 283 NLQTQVESLTTTNALMREDLSIAEKNLRILIQENENL 319 (386)
Q Consensus 283 ~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l 319 (386)
.|-.+++.|.++|+-++.||+--...+..|..|--.+
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~m 43 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNM 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhH
Confidence 4567788888999999888886555555555544433
No 69
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=55.39 E-value=45 Score=24.22 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=16.5
Q ss_pred HHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHH
Q psy1888 276 HLNATVGNLQTQVESLTTTNALMREDLSIAEKNL 309 (386)
Q Consensus 276 ~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i 309 (386)
.|+++|..|+..+..+...-..-|+|-+.|+.+|
T Consensus 15 ~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 15 TANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444455555555444
No 70
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=54.22 E-value=25 Score=26.16 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=24.2
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 280 TVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
....|+.+++.|+..|..|+.+ |..|+.|+..|++
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~-------i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKER-------ADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 3455777888888888877554 4467777777764
No 71
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=54.00 E-value=52 Score=23.36 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhh
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTT 294 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~ 294 (386)
=+||.+.+|++++..||+|..-+-.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae 27 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAE 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999998765433
No 72
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=53.05 E-value=32 Score=25.39 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=26.7
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 280 TVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
.+.+|+.+++.|+..|..|+.++. .|++|...|+.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~-------~L~~e~~~Lk~ 58 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIA-------NLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 356689999999999998876654 67777777764
No 73
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=51.56 E-value=34 Score=28.39 Aligned_cols=14 Identities=43% Similarity=0.601 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhH
Q psy1888 361 TIIELRRQLEDIKM 374 (386)
Q Consensus 361 t~~~lr~ql~~~k~ 374 (386)
-|..|++||.|.-+
T Consensus 90 KiaeLKrqLAd~va 103 (107)
T 2k48_A 90 KLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34467777766543
No 74
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=51.32 E-value=78 Score=26.75 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=10.5
Q ss_pred HHHHHHHHHhHHHHHH
Q psy1888 271 EELNRHLNATVGNLQT 286 (386)
Q Consensus 271 EElnr~l~~~~~~l~~ 286 (386)
.+.++||+.+|+.-|.
T Consensus 24 rN~T~lLq~qLTqAQe 39 (121)
T 3mq7_A 24 RNVTHLLQQELTEAQK 39 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 3456788877777553
No 75
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=50.81 E-value=2.2e+02 Score=29.11 Aligned_cols=26 Identities=12% Similarity=0.302 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhh
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTT 294 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~ 294 (386)
||-...+.....|.+|..+++++..+
T Consensus 90 ~L~k~q~~V~~~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 90 TLLKQEKTVKPVLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHhHHHHHHHHHHHHhhh
Confidence 55555566667777777777777544
No 76
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=48.36 E-value=58 Score=25.88 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
+|-+++--++..-+.+ .-.+|.++.++++.-++.|..|++||..|+
T Consensus 20 ~YWk~lAE~Rr~AL~e-------aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 20 QYWKEVAEQRRKALYE-------ALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp THHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777666555544433 335667776666666666777777777765
No 77
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=47.15 E-value=1.1e+02 Score=25.50 Aligned_cols=6 Identities=33% Similarity=0.866 Sum_probs=2.6
Q ss_pred HHHHHH
Q psy1888 364 ELRRQL 369 (386)
Q Consensus 364 ~lr~ql 369 (386)
.|.+|.
T Consensus 101 ~Lq~q~ 106 (110)
T 2v4h_A 101 QLQREF 106 (110)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 78
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.02 E-value=1.8e+02 Score=36.76 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=8.9
Q ss_pred hHHHHHhh-hHHHHHHHHHH
Q psy1888 260 MSLVLDQK-NYIEELNRHLN 278 (386)
Q Consensus 260 ~~~~ldQK-~ylEElnr~l~ 278 (386)
++.++.+| ..+++..++++
T Consensus 1904 y~~ll~~K~~el~~~~~rl~ 1923 (3245)
T 3vkg_A 1904 VVLLINEKRDQLEEEQLHLN 1923 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445444 34444444554
No 79
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=46.98 E-value=58 Score=27.39 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=6.3
Q ss_pred HHHhHHHHHHHHhHhH
Q psy1888 277 LNATVGNLQTQVESLT 292 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~ 292 (386)
|...|..|+..++.+.
T Consensus 20 Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 20 LYREISGLKAQLENMK 35 (120)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444444443
No 80
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=46.13 E-value=87 Score=26.06 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy1888 341 KAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLEM 379 (386)
Q Consensus 341 k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in~~~ 379 (386)
++|--.++-.|++++..=+++-..|...+.++-.-|=++
T Consensus 30 ~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 30 YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 344444455555555555555555555555555444443
No 81
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=46.03 E-value=79 Score=25.01 Aligned_cols=29 Identities=28% Similarity=0.184 Sum_probs=11.9
Q ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 292 TTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 292 ~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
...|.....+|..|.....+|..|+..++
T Consensus 37 r~~ni~~eskL~eae~rn~eL~~e~~~l~ 65 (81)
T 1wt6_A 37 RTDNQNFASQLREAEARNRDLEAHVRQLQ 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444
No 82
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=44.40 E-value=1.2e+02 Score=27.95 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
+|-+++--++..-|.+ .=.+|.+|.++++.-+..|..|++||..|+
T Consensus 97 ~YWk~lAE~RR~AL~e-------aLeEN~~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 97 QYWKEVAEKRRKALYE-------ALKENEKLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp THHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777776655544433 223455554444443334444444444443
No 83
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=43.26 E-value=1.6e+02 Score=25.78 Aligned_cols=47 Identities=17% Similarity=0.073 Sum_probs=29.2
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
.++..|+..+..++.....+++++..-...+..++.|+..|+-++..
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~ 114 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNV 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666666666666677777666654443
No 84
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=42.05 E-value=1.8e+02 Score=25.53 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 269 YIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
-++.-...++..+.+|...+..-.+.+..++.|+.+.+.....+.+.+..++.||.
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~ 127 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444466666666666666666666666666666554
No 85
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=39.88 E-value=1.2e+02 Score=26.42 Aligned_cols=69 Identities=16% Similarity=0.061 Sum_probs=25.0
Q ss_pred HHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccccccchhhhhhcchHHHHHHHHHHHHHHHH
Q psy1888 282 GNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN---SSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQ 357 (386)
Q Consensus 282 ~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~---~~~~~~~el~~q~~~k~e~e~a~kllekd~~e 357 (386)
..+...++...........+++.....+-+|..|...|..+++. ||+.+..+|+---. |-|-+|+|+.+
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASRe-------AKKqlEadl~~ 140 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASRE-------AKKQVEKDLLE 140 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC----------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 33444444444444444455555555555677777777776664 45544443332111 34557777654
No 86
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=39.60 E-value=2.4e+02 Score=29.13 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=28.5
Q ss_pred HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 278 NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
++.|...|+.++..++.|+..+.+-+. .+.+.|.++..++.||..
T Consensus 8 q~~la~yq~elarvqkana~aka~Ye~---~~ae~~a~n~~i~aeNea 52 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANADAKAAYEA---AVAANNAANAALTAENTA 52 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHH
Confidence 456667778888888888888777665 344555544444444443
No 87
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.58 E-value=49 Score=24.08 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=14.2
Q ss_pred HHHHHHhHHHHHHHHhHhHhhhHHhHHH
Q psy1888 274 NRHLNATVGNLQTQVESLTTTNALMRED 301 (386)
Q Consensus 274 nr~l~~~~~~l~~~~~~l~~~n~~~~ee 301 (386)
+..|++....|+.++..|..++..++..
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 88
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=39.45 E-value=79 Score=24.86 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
+|-+++--.+...+.+ .=++|.++-+++..-+..|..|++||..|+
T Consensus 16 ~YWk~lAE~RR~AL~e-------aL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 16 QYWKEVAEQRRKALYE-------ALKENEKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp THHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777666555544432 234555555555544445555555555554
No 89
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=39.15 E-value=1.6e+02 Score=24.12 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 344 MEVAMKLLERDVHQKQDTIIELRRQLED 371 (386)
Q Consensus 344 ~e~a~kllekd~~ekqdt~~~lr~ql~~ 371 (386)
++..++-|++++..+++.+..+.+++++
T Consensus 100 l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 100 LESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555544
No 90
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.64 E-value=1.5e+02 Score=37.46 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=45.9
Q ss_pred HHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhh-cchHHHHHHHHHHHHHHHHHH---HH
Q psy1888 286 TQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEV-GLKAEMEVAMKLLERDVHQKQ---DT 361 (386)
Q Consensus 286 ~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~-~~k~e~e~a~kllekd~~ekq---dt 361 (386)
+++..++++-..-+++|++++..+.+++++++.|+.+++....+. ..|+.++ ..+.-|+.|-+|+..=-.||. .+
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek-~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET-EQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence 444455555555566666666677777777777776655422211 1122222 244557778888766545553 34
Q ss_pred HHHHHHHHHH
Q psy1888 362 IIELRRQLED 371 (386)
Q Consensus 362 ~~~lr~ql~~ 371 (386)
+..|..|++.
T Consensus 2093 ~~~l~~~~~~ 2102 (3245)
T 3vkg_A 2093 SENFNTQMST 2102 (3245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4455555443
No 91
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=37.93 E-value=58 Score=29.07 Aligned_cols=46 Identities=13% Similarity=0.256 Sum_probs=38.0
Q ss_pred HHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy1888 282 GNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSS 327 (386)
Q Consensus 282 ~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~ 327 (386)
..|+++++++..+...+.++|..-...+.++..++..+|+++-..+
T Consensus 99 e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~ 144 (170)
T 3l4q_C 99 ERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLR 144 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3478888889888888889988878888899999999998876544
No 92
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=37.37 E-value=1.4e+02 Score=23.05 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=14.4
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHHHHH
Q psy1888 280 TVGNLQTQVESLTTTNALMREDLSIA 305 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel~~a 305 (386)
+++.|+..+.+-+.+-..+++.++..
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk 44 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALK 44 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555555443
No 93
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=37.22 E-value=1e+02 Score=23.88 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDL 302 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel 302 (386)
.|.|.....|+..|...|..|+.++.....+.+.+
T Consensus 24 AfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 24 SFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555544444443
No 94
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.11 E-value=1.5e+02 Score=25.06 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy1888 309 LRILIQENENLKNQLAN 325 (386)
Q Consensus 309 i~~lq~e~~~l~~e~~~ 325 (386)
+-+|+.|++.|.+++..
T Consensus 73 vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555544433
No 95
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=36.94 E-value=48 Score=25.36 Aligned_cols=28 Identities=25% Similarity=0.257 Sum_probs=13.8
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHH
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSI 304 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~ 304 (386)
|+.+|..|....+.+..+|..++.++..
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544443
No 96
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=36.50 E-value=52 Score=26.24 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=23.2
Q ss_pred HHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 283 NLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQ 322 (386)
Q Consensus 283 ~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e 322 (386)
.++.+++.|+.+|..|+.+++ .|+.|+..|++-
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~-------~L~~E~~~Lr~l 72 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVE-------QLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 377888888888888866555 566666666643
No 97
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=36.12 E-value=1.1e+02 Score=21.65 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=25.0
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
.++..++.++++....-...+.++..++..+..+-+.+...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~ 47 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRD 47 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666555555566666666666555555555443
No 98
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=36.08 E-value=86 Score=24.63 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhhhcccccc
Q psy1888 308 NLRILIQENENLKNQLANSSQHTS 331 (386)
Q Consensus 308 ~i~~lq~e~~~l~~e~~~~~~~~~ 331 (386)
.|.+||+|.+....++..+++++.
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLk 29 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLK 29 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777666666666643
No 99
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=35.72 E-value=1.4e+02 Score=22.36 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=27.5
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQL 323 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~ 323 (386)
.+.|++++..+-.+-.+++..++..|.+|....+.|.-|+
T Consensus 33 y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 33 YKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777777666665543
No 100
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=35.45 E-value=37 Score=27.33 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=10.6
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
.++..|+.+++.+..++..++.|+.
T Consensus 55 ~e~~~L~~e~~~L~~e~~~~~~e~d 79 (90)
T 2wt7_B 55 NEKTQLIQQVEQLKQEVSRLARERD 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 101
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.29 E-value=35 Score=24.73 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=6.2
Q ss_pred HHHHHHhHhHhhhHHh
Q psy1888 283 NLQTQVESLTTTNALM 298 (386)
Q Consensus 283 ~l~~~~~~l~~~n~~~ 298 (386)
+|++|++.|.+++..+
T Consensus 30 eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 30 EMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444443333333
No 102
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=35.04 E-value=39 Score=24.50 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=12.9
Q ss_pred HHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 281 VGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 281 ~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
+.+|..++..|+.+|..++.++.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~ 46 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELK 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666655544
No 103
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=34.93 E-value=78 Score=25.79 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccccc
Q psy1888 308 NLRILIQENENLKNQLANSSQHTS 331 (386)
Q Consensus 308 ~i~~lq~e~~~l~~e~~~~~~~~~ 331 (386)
.|.+||+|.+....++..+++++.
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLk 29 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLK 29 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777776666666666643
No 104
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=34.45 E-value=1.7e+02 Score=23.16 Aligned_cols=61 Identities=20% Similarity=0.353 Sum_probs=35.9
Q ss_pred chhHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 258 DNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 258 ~~~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
+.|..-+|-=-|||+=|+.|++++..++.+-.+ .-...-..+++.++..|..+..+...+.
T Consensus 16 dRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~--~~~~~ye~~i~~Lr~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 16 DRFANLIDKVRFLEQQNKILLAELEQLKGQGKS--RLGDLYEEEMRELRRQVDQLTNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777888889999999998888887765322 1111113334444444444444444443
No 105
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=33.40 E-value=84 Score=26.29 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhhccccccc
Q psy1888 308 NLRILIQENENLKNQLANSSQHTSN 332 (386)
Q Consensus 308 ~i~~lq~e~~~l~~e~~~~~~~~~~ 332 (386)
.|.+||+|.+...+++..+|+++..
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkd 47 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRD 47 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777766533
No 106
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=33.24 E-value=53 Score=25.61 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=23.9
Q ss_pred HHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 282 GNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 282 ~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
..++.+++.|+.+|..|+.+++ .|..|+..|++
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~-------~L~~E~~~Lr~ 71 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVE-------QLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 3478888888888888865554 57777777764
No 107
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=33.23 E-value=1.6e+02 Score=27.40 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=36.8
Q ss_pred HhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy1888 265 DQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENE 317 (386)
Q Consensus 265 dQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~ 317 (386)
..|.|+-..-..+.+.+..|..+++.+..++..+...|+.-+....++.|...
T Consensus 164 ~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 164 VVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777777888888888888887777777776665555555555443
No 108
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=33.15 E-value=2.1e+02 Score=23.72 Aligned_cols=14 Identities=36% Similarity=0.769 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q psy1888 359 QDTIIELRRQLEDI 372 (386)
Q Consensus 359 qdt~~~lr~ql~~~ 372 (386)
++.+..|++|++|.
T Consensus 110 e~e~~~Lk~~led~ 123 (129)
T 2fxo_A 110 EDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455666666664
No 109
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=32.40 E-value=14 Score=28.84 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy1888 299 REDLSIAEKNLRILIQENENLKNQLANSSQ 328 (386)
Q Consensus 299 ~eel~~a~~~i~~lq~e~~~l~~e~~~~~~ 328 (386)
.||.+.-|..|.+|.+.+.+|..||+..+.
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888888888775443
No 110
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.94 E-value=23 Score=30.58 Aligned_cols=6 Identities=0% Similarity=-0.213 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy1888 306 EKNLRI 311 (386)
Q Consensus 306 ~~~i~~ 311 (386)
++.+..
T Consensus 88 N~MVa~ 93 (135)
T 2e7s_A 88 NNLVAD 93 (135)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 111
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=31.42 E-value=1.6e+02 Score=21.93 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=34.4
Q ss_pred HHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 275 RHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 275 r~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
....+++.+++..+..-...-..-|.|+...+..|-.|+-|++.+|
T Consensus 31 ~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 31 EWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345777777777766665555568888888889999999988876
No 112
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=31.37 E-value=3.6e+02 Score=26.32 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=24.6
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLAN 325 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~ 325 (386)
..+.+++.+++.+=..+ +.+. .++|.-..||++++..+.-+..
T Consensus 373 eal~~~~~~i~~~l~~~---~~~~-e~~~~~~~~~~~~~~~~~~~~~ 415 (471)
T 3mq9_A 373 EALKDAQTRITAARDGL---RAVM-EARNVTHLLQQELTEAQKGFQD 415 (471)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh---HHHH-HhhhHHHHHHHHHHHHhhhHHH
Confidence 34445555555544333 2222 3467777788888877765554
No 113
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=31.28 E-value=1.4e+02 Score=24.55 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHh
Q psy1888 269 YIEELNRHLNATVGNLQTQVESL 291 (386)
Q Consensus 269 ylEElnr~l~~~~~~l~~~~~~l 291 (386)
|+++....++.++..++..++.+
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l 114 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAI 114 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444444443333333
No 114
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=30.94 E-value=1.4e+02 Score=21.01 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=25.4
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQL 323 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~ 323 (386)
|..|+..+.+.|-.+.++-.-....|..|..|...|.+|.
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666665444444557788888888887654
No 115
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.92 E-value=1.2e+02 Score=30.34 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=27.6
Q ss_pred HHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 276 HLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 276 ~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
-|+..+..++.+.++++..+..++.+++..+..+.+...+...|.++..
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666555555554444444544443
No 116
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=30.79 E-value=1.1e+02 Score=30.12 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=40.9
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy1888 280 TVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSS 327 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~ 327 (386)
....|+++++++..+..+|.++|..-...+.++..+++.+|++.-+.+
T Consensus 206 n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~ 253 (373)
T 3hhm_B 206 NYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLR 253 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 344589999999999999999999888888899999999999886533
No 117
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.65 E-value=55 Score=24.31 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=16.9
Q ss_pred HhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 279 ATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 279 ~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
..+.+|+.+++.|+..|..+..+++
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777655544
No 118
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.35 E-value=1.1e+02 Score=29.78 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=23.3
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
.+.+++++.-+|.+....++++..|+.++++ .+..|.+|+++...+++
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~--------------~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRV--------------NQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 3444554444444444444444444444433 33455566665555554
No 119
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=28.22 E-value=68 Score=29.03 Aligned_cols=32 Identities=28% Similarity=0.224 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHH
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMRED 301 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~ee 301 (386)
+.|+-.+-=.++++|+++...|+++|..|.+|
T Consensus 152 irELi~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 152 IRELICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677788999999999999999988765
No 120
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=28.11 E-value=1.3e+02 Score=23.57 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=22.8
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHH
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTNALMREDLSIA 305 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a 305 (386)
+=|++|-.+|..++..+..++.+|..+++=+.-+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777777777776555443
No 121
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=27.79 E-value=2.5e+02 Score=24.47 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=27.1
Q ss_pred HHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHh
Q psy1888 264 LDQKNYIEELNRHLNATVGNLQTQVESLTTTNALM 298 (386)
Q Consensus 264 ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~ 298 (386)
|++-.|-.|+|..+...+.+++..++.+.+.-+=+
T Consensus 51 l~~sel~qel~~~l~~~ld~l~~~~~~l~~~L~P~ 85 (165)
T 1gs9_A 51 LLSSQVTQELRALMDETMKELKAYKSELEEQLTPV 85 (165)
T ss_dssp HHSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 45566889999999999999888888887654433
No 122
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=27.63 E-value=2.4e+02 Score=24.35 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhc
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVG 339 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~ 339 (386)
++|.|..|++.+++-..=++-|+.-..-.++.++.++....+-++.++++++ +.+||.-.|.
T Consensus 84 L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~--------vkkeL~~hi~ 145 (152)
T 4fla_A 84 LAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQ--------VRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhh
No 123
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=27.57 E-value=78 Score=21.16 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=16.8
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHH
Q psy1888 280 TVGNLQTQVESLTTTNALMREDL 302 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel 302 (386)
.....|+-|++++++|..+.+|+
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHH
Confidence 34556788888888888886664
No 124
>1m5i_A APC protein; coiled-coil, antitumor protein; 2.00A {Homo sapiens} SCOP: h.4.13.1
Probab=27.55 E-value=2.1e+02 Score=24.25 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=18.2
Q ss_pred hhhhhhcchHHHHHH-------HHHHHHHHHHHHHH
Q psy1888 333 LSVHEVGLKAEMEVA-------MKLLERDVHQKQDT 361 (386)
Q Consensus 333 el~~q~~~k~e~e~a-------~kllekd~~ekqdt 361 (386)
..|-+.|--.||+-. ++.+|++|..-|+.
T Consensus 74 ~mEEr~Gt~deM~qRaQiRv~r~qqIe~eil~iq~~ 109 (125)
T 1m5i_A 74 AMEEQLGTCQDMEKRAQRRIARIQQIEKDILRIRQL 109 (125)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 334455555666542 57788888877765
No 125
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.54 E-value=4.6e+02 Score=26.82 Aligned_cols=84 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred ccchhHHHHHhhhH------HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHH-----------HHHHHHHHHHHH
Q psy1888 256 VEDNMSLVLDQKNY------IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAE-----------KNLRILIQENEN 318 (386)
Q Consensus 256 ~~~~~~~~ldQK~y------lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~-----------~~i~~lq~e~~~ 318 (386)
+++.+..-+..++| ++++.. +..+-..++.+++.++.......+++..++ ....+|.+|...
T Consensus 49 n~~~v~~~l~~R~~~~~~~~~~~~~~-ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (501)
T 1wle_A 49 YPEDAARALDLRKGELRSKDLPGIIS-TWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGRE 127 (501)
T ss_dssp SHHHHHHHHHHHTCSCCGGGHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHH
Q ss_pred HHHHhhhccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 319 LKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIEL 365 (386)
Q Consensus 319 l~~e~~~~~~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~l 365 (386)
+++ .++-||++..+.++.+..+
T Consensus 128 l~~-------------------------~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 128 IRK-------------------------QLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHH-------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------------------------HHHHHHHHHHHHHHHHHHH
No 126
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=27.33 E-value=1.2e+02 Score=24.42 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=31.8
Q ss_pred HHHHHHHHHhHHH---HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHH
Q psy1888 271 EELNRHLNATVGN---LQTQVESLTTTNALMREDLSIAEKNLRILIQENEN 318 (386)
Q Consensus 271 EElnr~l~~~~~~---l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~ 318 (386)
++.-++..+|+.+ .+..|-.|+.++.++|..-+. -|..|..|++.
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEe---EI~rLr~eLe~ 86 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEE---EIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4566777888887 556889999999999887664 45555555443
No 127
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=27.28 E-value=1e+02 Score=29.11 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1888 342 AEMEVAMKLLERDVHQKQDT 361 (386)
Q Consensus 342 ~e~e~a~kllekd~~ekqdt 361 (386)
.+|+--|-.||||+.+|-++
T Consensus 252 ~~~~~~~~~~~~d~~~~~~~ 271 (273)
T 3s84_A 252 GDVEGHLSFLEKDLRDKVNS 271 (273)
T ss_dssp --------------------
T ss_pred hhHHhhhhHHHHHHHHHhhc
Confidence 34555567778887777654
No 128
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=27.12 E-value=1.3e+02 Score=23.23 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q psy1888 308 NLRILIQENENLK 320 (386)
Q Consensus 308 ~i~~lq~e~~~l~ 320 (386)
.+-+.+++...++
T Consensus 21 klk~~~ee~~~~~ 33 (71)
T 1s1c_X 21 KMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 129
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.07 E-value=4.8e+02 Score=26.04 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1888 348 MKLLERDVHQKQDTIIELRRQL 369 (386)
Q Consensus 348 ~kllekd~~ekqdt~~~lr~ql 369 (386)
++-|+..+.+.+..|..|++++
T Consensus 107 i~~l~~~~~~~~~~i~~l~~~i 128 (409)
T 1m1j_C 107 IQQLTDMHIMNSNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444444444444444433
No 130
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=26.92 E-value=3.6e+02 Score=24.48 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhcchHHHHHHH-HHHHHHHHHHHHHH
Q psy1888 284 LQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAM-KLLERDVHQKQDTI 362 (386)
Q Consensus 284 l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~~~~~~~~~el~~q~~~k~e~e~a~-kllekd~~ekqdt~ 362 (386)
+...+++++.+|..+.++...+...+..+.++++.+.+ -|.|||.+| +=.=-=+-||-=-|
T Consensus 130 ~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~------------------~K~~~E~~L~~KF~~lLNeKK~KI 191 (213)
T 1ik9_A 130 ALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVS------------------AKEALETDLYKRFILVLNEKKTKI 191 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHH
Q psy1888 363 IELRRQL 369 (386)
Q Consensus 363 ~~lr~ql 369 (386)
..|+++|
T Consensus 192 R~lq~~L 198 (213)
T 1ik9_A 192 RSLHNKL 198 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 131
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=26.91 E-value=2.7e+02 Score=23.02 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=12.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 339 GLKAEMEVAMKLLERDVHQKQDTIIEL 365 (386)
Q Consensus 339 ~~k~e~e~a~kllekd~~ekqdt~~~l 365 (386)
.-|.+++.-++-|+.++.+-.|....|
T Consensus 76 ~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 76 KNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333
No 132
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=26.34 E-value=2.9e+02 Score=28.63 Aligned_cols=8 Identities=25% Similarity=0.219 Sum_probs=3.6
Q ss_pred HHHHhhcc
Q psy1888 205 VILGKLLS 212 (386)
Q Consensus 205 vL~~lL~G 212 (386)
.+-|+..|
T Consensus 47 aIdG~vQG 54 (526)
T 3iyk_A 47 AIDGLVQG 54 (526)
T ss_pred HHhHHHHh
Confidence 33444444
No 133
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=26.07 E-value=73 Score=27.11 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=30.4
Q ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHH
Q psy1888 261 SLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRI 311 (386)
Q Consensus 261 ~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~ 311 (386)
..+-.+...+.++...|.+...++-.+++.+..++..++.+++..+..+..
T Consensus 7 ~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 7 EAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666665554566777777777776666666655544443
No 134
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=25.76 E-value=1.7e+02 Score=22.48 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q psy1888 308 NLRILIQENENLK 320 (386)
Q Consensus 308 ~i~~lq~e~~~l~ 320 (386)
.+-+.+++...++
T Consensus 19 klk~~~ee~~~~~ 31 (71)
T 1uix_A 19 KLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 135
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.28 E-value=1.9e+02 Score=28.73 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=14.1
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
+-.+.++.+...|+.+++.++.+...+++++.
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 136
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.64 E-value=49 Score=30.85 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy1888 308 NLRILIQENENLKNQLA 324 (386)
Q Consensus 308 ~i~~lq~e~~~l~~e~~ 324 (386)
...++++||.+|++.+.
T Consensus 44 ~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 44 EVADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45577778888887554
No 137
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=24.52 E-value=1.3e+02 Score=27.01 Aligned_cols=32 Identities=25% Similarity=0.180 Sum_probs=24.8
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
|+..++=.++++|+++++.++++|.+|+.|..
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788889999999999999987755
No 138
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=24.40 E-value=82 Score=24.28 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy1888 312 LIQENENLKN 321 (386)
Q Consensus 312 lq~e~~~l~~ 321 (386)
|-+++..||+
T Consensus 48 L~eq~~lLK~ 57 (71)
T 3bbp_D 48 LMEQIKLLKS 57 (71)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 139
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=24.15 E-value=1.1e+02 Score=25.44 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy1888 345 EVAMKLLERDVHQKQDTIIELRRQLEDIKMI 375 (386)
Q Consensus 345 e~a~kllekd~~ekqdt~~~lr~ql~~~k~i 375 (386)
|.-+.+||.++.+|...+..+|+..++++.+
T Consensus 75 etL~~~le~Qi~~kr~e~~~i~~~~~~~~~~ 105 (108)
T 1ykh_A 75 ESLIMLLEEQLEYKRGEIREIEQVCKQVHDK 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345788889999999999999999988864
No 140
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.71 E-value=3.8e+02 Score=26.95 Aligned_cols=85 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred ccchhHHHHHhhhH---HH--HHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHH---HHHHHHHHHHHHHHhhhcc
Q psy1888 256 VEDNMSLVLDQKNY---IE--ELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKN---LRILIQENENLKNQLANSS 327 (386)
Q Consensus 256 ~~~~~~~~ldQK~y---lE--Elnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~---i~~lq~e~~~l~~e~~~~~ 327 (386)
.++.++..+.-+++ ++ +-.-.+..+-..++.+++.+........+++..++.. ..+|.++...+++
T Consensus 10 n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~------ 83 (455)
T 2dq0_A 10 NPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVK------ 83 (455)
T ss_dssp CHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHH------
T ss_pred CHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH------
Q ss_pred ccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 328 QHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIEL 365 (386)
Q Consensus 328 ~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~l 365 (386)
.++-||++..+.++.+..+
T Consensus 84 -------------------~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 84 -------------------RIGELENEVEELKKKIDYY 102 (455)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHHHH
No 141
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.55 E-value=5.2e+02 Score=25.22 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy1888 340 LKAEMEVAMKLLERDVHQKQDTIIELRRQLEDIKMINLE 378 (386)
Q Consensus 340 ~k~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k~in~~ 378 (386)
|.+|+|.-+.-+++|....|+.+..|+++=+..+....+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhh
Confidence 333343333334444445555555555544444444333
No 142
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=23.12 E-value=3.1e+02 Score=22.44 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy1888 308 NLRILIQENENLKNQLAN 325 (386)
Q Consensus 308 ~i~~lq~e~~~l~~e~~~ 325 (386)
.+..|..||+.|+.|+..
T Consensus 73 everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 73 ELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455566666666666654
No 143
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=23.11 E-value=2.5e+02 Score=25.13 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 270 IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 270 lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~ 320 (386)
+.|+-.+=+.+|+.||..+|.|+......|+ ....+++++.+.-
T Consensus 126 ireli~~AertV~kLqkeiD~LEDeL~~eKe-------k~k~i~~eLDqTl 169 (175)
T 3mud_A 126 IRELICYCLDTTAKNEKSIDDLEEKVAHAKE-------ENLNMHQMLDQTL 169 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 3455556677777777777777655544433 4445555555443
No 144
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.09 E-value=96 Score=22.33 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1888 306 EKNLRILIQENENLKN 321 (386)
Q Consensus 306 ~~~i~~lq~e~~~l~~ 321 (386)
+..+.+|++++..++.
T Consensus 32 k~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 32 KEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555555544
No 145
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=23.00 E-value=70 Score=23.36 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=10.0
Q ss_pred HHHHHhHHHHHHHHhHhHhhhHHh
Q psy1888 275 RHLNATVGNLQTQVESLTTTNALM 298 (386)
Q Consensus 275 r~l~~~~~~l~~~~~~l~~~n~~~ 298 (386)
..|++....|..++..|..++..+
T Consensus 32 ~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 32 KTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 146
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=22.69 E-value=1.9e+02 Score=20.80 Aligned_cols=29 Identities=7% Similarity=0.149 Sum_probs=17.8
Q ss_pred HHHHHhHHHHHHHHhHhHhhhHHhHHHHH
Q psy1888 275 RHLNATVGNLQTQVESLTTTNALMREDLS 303 (386)
Q Consensus 275 r~l~~~~~~l~~~~~~l~~~n~~~~eel~ 303 (386)
-+|+++|..|-.||+.|...-..++-+..
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777665444444333
No 147
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.47 E-value=2e+02 Score=28.52 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=23.2
Q ss_pred HHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 277 LNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQL 323 (386)
Q Consensus 277 l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~ 323 (386)
++..+.+|+.+..+++.+.+.++.++...+..+.+...+...|.++.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555554444444444444444433
No 148
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.30 E-value=1.8e+02 Score=23.10 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=27.3
Q ss_pred ccchhHHHHHhhhHHHHHHHHHHHhHHH---HHHHHhHhHhhhHHhHHHHHHHHH
Q psy1888 256 VEDNMSLVLDQKNYIEELNRHLNATVGN---LQTQVESLTTTNALMREDLSIAEK 307 (386)
Q Consensus 256 ~~~~~~~~ldQK~ylEElnr~l~~~~~~---l~~~~~~l~~~n~~~~eel~~a~~ 307 (386)
+++++=.+++ |++..-|...+.+ |+.+|+.++.++..+|+++...++
T Consensus 25 Pse~YWk~lA-----E~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 25 PSSQYWKEVA-----EKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666665 4555567766644 666666666666666666554333
No 149
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.25 E-value=2.1e+02 Score=28.46 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
.-|++-.+.+..+..+++.++..+..++..++++|..+...--.|-.++..++.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 346677777778888888888888888888888888777777777777777763
No 150
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.13 E-value=1.1e+02 Score=30.71 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=26.7
Q ss_pred HHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 274 NRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 274 nr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
+.-+...+..|+..++-+..++..++.|....+..+..+++|+..+++
T Consensus 44 ~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333444455566666666666666666666555666666776666653
No 151
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=21.71 E-value=97 Score=29.75 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCC
Q psy1888 95 HMPLQHFFIVLEHVLRHGLKP 115 (386)
Q Consensus 95 ~~~L~~LC~~LE~iL~HGLK~ 115 (386)
+|....|..++..++.+ +-+
T Consensus 41 ~Pt~KdF~~if~fL~~~-idp 60 (315)
T 2ve7_A 41 APSVKDFLKIFTFLYGF-LCP 60 (315)
T ss_dssp SCCHHHHHHHHHHHHTT-TST
T ss_pred CCCHHHHHHHHHHHHHh-cCC
Confidence 46678899999999976 443
No 152
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.57 E-value=1.1e+02 Score=23.25 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=20.7
Q ss_pred hHHHHHhhhHHHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHH
Q psy1888 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDL 302 (386)
Q Consensus 260 ~~~~ldQK~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel 302 (386)
...+-.--+|+..| ..++..|+.+++.+..+|..++.+|
T Consensus 39 ~~iL~~Ai~YI~~L----~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 39 AQILDKATEYIQYM----RRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445576643 4445555556666665555554444
No 153
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.37 E-value=34 Score=25.29 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=17.0
Q ss_pred HHHHHHhHhHHHHHHHhhcC
Q psy1888 367 RQLEDIKMINLEMYKKLQAL 386 (386)
Q Consensus 367 ~ql~~~k~in~~~~~~~~~~ 386 (386)
+|+...|.||+.+..|+|.|
T Consensus 11 ~q~~kLKq~n~~L~~kv~~L 30 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHL 30 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999998864
No 154
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.31 E-value=2e+02 Score=26.36 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=30.3
Q ss_pred ccchhHHHHHhhhHHHHHHHHHHHhHHH---HHHHHhHhHhhhHHhHHHHHHHHHHHH
Q psy1888 256 VEDNMSLVLDQKNYIEELNRHLNATVGN---LQTQVESLTTTNALMREDLSIAEKNLR 310 (386)
Q Consensus 256 ~~~~~~~~ldQK~ylEElnr~l~~~~~~---l~~~~~~l~~~n~~~~eel~~a~~~i~ 310 (386)
.++++=.+++ |++..-|...|.+ |+.+|+.++.+...+|+|+...+.-+.
T Consensus 94 Pse~YWk~lA-----E~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 94 PSSQYWKEVA-----EKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp CCTTHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666655 4444556655544 777777777777777777665444333
No 155
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=21.15 E-value=2.8e+02 Score=21.31 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=22.5
Q ss_pred HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHH
Q psy1888 278 NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILI 313 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq 313 (386)
+.-++.|.+|+.....-|.++..++.-+.+.|..|-
T Consensus 23 nvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 23 KKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 344556677777777777777666665555555543
No 156
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.98 E-value=3.6e+02 Score=22.41 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=22.0
Q ss_pred HHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 281 VGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 281 ~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
..+-|..+..+......|.-||+..+.....+..|++.|+.|..
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555545444555555555554444
No 157
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.86 E-value=2.9e+02 Score=21.25 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1888 302 LSIAEKNLRILIQENENLK 320 (386)
Q Consensus 302 l~~a~~~i~~lq~e~~~l~ 320 (386)
|..-...|.+||.|+...+
T Consensus 49 L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 49 LDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333446667777766654
No 158
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=20.80 E-value=1.3e+02 Score=31.37 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=24.5
Q ss_pred HHhHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1888 278 NATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLA 324 (386)
Q Consensus 278 ~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~e~~ 324 (386)
+....+|+.++..++.+..+..++|..+...+..|.++......|-.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~ 380 (575)
T 2i1j_A 334 EKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKE 380 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34456688888888888888888888888888888888877766544
No 159
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=20.79 E-value=4.8e+02 Score=23.79 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhHhHhhhHHh--HHHHHHHHHHHHHHHHHHHHHH
Q psy1888 268 NYIEELNRHLNATVGNLQTQVESLTTTNALM--REDLSIAEKNLRILIQENENLK 320 (386)
Q Consensus 268 ~ylEElnr~l~~~~~~l~~~~~~l~~~n~~~--~eel~~a~~~i~~lq~e~~~l~ 320 (386)
.+..++|..+...+..++.+|+..+...... .+.|-.|+.....|+-|..-++
T Consensus 88 ~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~al~lEa~yre 142 (214)
T 2cly_A 88 QKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRE 142 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999866553211 2333333444444554444443
No 160
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=20.78 E-value=1.1e+02 Score=22.86 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=23.4
Q ss_pred HHHHHHHHhHHHHHHHHhHhHhhhHHhH
Q psy1888 272 ELNRHLNATVGNLQTQVESLTTTNALMR 299 (386)
Q Consensus 272 Elnr~l~~~~~~l~~~~~~l~~~n~~~~ 299 (386)
..|.+++..+.-+|.++.++..+|+.+.
T Consensus 34 kVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 34 KVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 4577788888889999999999998774
No 161
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=20.68 E-value=2.6e+02 Score=27.70 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1888 342 AEMEVAMKLLERDVHQKQDTIIELRRQLEDIK 373 (386)
Q Consensus 342 ~e~e~a~kllekd~~ekqdt~~~lr~ql~~~k 373 (386)
-|...-+.+||=+-| -.+|-+||++|.+..
T Consensus 82 ~EfktN~ellElENC--yYSLqnLrKKl~~n~ 111 (355)
T 3etv_A 82 KEVKTNLNILELENC--YYSLQSLRKKMRNNA 111 (355)
T ss_dssp HHHHHHHHTTCHHHH--HHHHHHHHHHHHHCH
T ss_pred HHHHhhHHHHHHHHH--HHHHHHHHHHHhcch
Confidence 355556788887766 678889999998653
No 162
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.57 E-value=3.1e+02 Score=21.41 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=19.7
Q ss_pred hHHHHHHHHhHhHhhhHHhHHHHHHHHHHHHHHHH
Q psy1888 280 TVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQ 314 (386)
Q Consensus 280 ~~~~l~~~~~~l~~~n~~~~eel~~a~~~i~~lq~ 314 (386)
.+.+|+.+++.+..+...+.-+++.....|..+++
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45557777777766666665555544444444444
No 163
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=20.23 E-value=2.2e+02 Score=20.42 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=26.0
Q ss_pred HHHHhHhHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 285 QTQVESLTTTNALMREDLSIAEKNLRILIQENENLKN 321 (386)
Q Consensus 285 ~~~~~~l~~~n~~~~eel~~a~~~i~~lq~e~~~l~~ 321 (386)
..-+..|+++.+.+|+++= +.+|..+..+++++++
T Consensus 12 ld~l~~LEkqF~~LkEqlY--~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 12 VSEMLDLEKQFSELKEKLF--RERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHc
Confidence 3456678899999999976 4677788888877764
No 164
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.07 E-value=6.5e+02 Score=25.67 Aligned_cols=87 Identities=10% Similarity=0.048 Sum_probs=0.0
Q ss_pred ccccchhHHHHHhhhH---HHHHHHHHHHhHHHHHHHHhHhHhhhHHhHHHHHHHHHH---HHHHHHHHHHHHHHhhhcc
Q psy1888 254 SQVEDNMSLVLDQKNY---IEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKN---LRILIQENENLKNQLANSS 327 (386)
Q Consensus 254 ~~~~~~~~~~ldQK~y---lEElnr~l~~~~~~l~~~~~~l~~~n~~~~eel~~a~~~---i~~lq~e~~~l~~e~~~~~ 327 (386)
+..++.++..+..+++ +=+-.-.+..+-..++.+++.+........+++..++.. +.+|.+|...+++
T Consensus 12 ~~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~------ 85 (485)
T 3qne_A 12 GGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSN------ 85 (485)
T ss_dssp TCCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH------
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH------
Q ss_pred ccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1888 328 QHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIEL 365 (386)
Q Consensus 328 ~~~~~el~~q~~~k~e~e~a~kllekd~~ekqdt~~~l 365 (386)
.++-||+++.+-++.+..+
T Consensus 86 -------------------~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 86 -------------------EKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHHHH
Done!