RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1888
(386 letters)
>2dwk_A Protein RUFY3; RUN domain, effector, RAP2, bundle, protein binding,
structural genomics, NPPSFA; 2.00A {Mus musculus} PDB:
2dwg_A 2cxf_A 2cxl_A
Length = 180
Score = 174 bits (441), Expect = 2e-53
Identities = 99/178 (55%), Positives = 134/178 (75%), Gaps = 1/178 (0%)
Query: 58 ARNPVIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKK 117
+ + ER NL+N++KL +K LIE++ GR LDSD+ PLQ FF+V+EH L+HGLK KK
Sbjct: 4 GSSGMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKK 63
Query: 118 GLLGPKKELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYL 177
LG K W L+LVEKL PEA++ITASV+DLP +KT +GR RAWLRLALMQKKL++Y+
Sbjct: 64 TFLGQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYM 123
Query: 178 QVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVID 235
+ L++ + ++L E++E +AL+M +E +I G L+ LNVID N C+K EDLD Q GVID
Sbjct: 124 KALINKK-ELLSEFYEVNALMMEEEGAIIAGLLVGLNVIDANFCMKGEDLDSQVGVID 180
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding
domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14,
nesca PLAT; HET: GTP; 3.20A {Mus musculus}
Length = 384
Score = 78.2 bits (191), Expect = 4e-16
Identities = 49/251 (19%), Positives = 82/251 (32%), Gaps = 61/251 (24%)
Query: 34 DDVEVRVRDPPELRSPSPEPPLFVARNPVIIERRNLVNISKLIVKELIETSQKHGRML-- 91
+D + + P +P +I + N K + L E K RML
Sbjct: 7 NDQREKYIQEARNMGSTIRQPKLSNLSPSVIAQTN----WKFVEGLLKECRNKTKRMLVE 62
Query: 92 --DSDHMPLQHFFI----------------VLEHVLRHGLKPKKGLLGPKKELWDILQLV 133
+ + L H + +LE + HGL+ K+G K LW L
Sbjct: 63 KMGREAVELGHGEVNITGVEENTLIASLCDLLERIWSHGLQVKQG----KSALWSHLLHY 118
Query: 134 EK---------------------------------LNPEASDITASVRDLPTVKTHMGRA 160
++ L ++++ +KT +G+A
Sbjct: 119 QENRQRKLTSGSLSTSGILLDSERRKSDASAVMSPLRISLIQDMRHIQNIGEIKTDVGKA 178
Query: 161 RAWLRLALMQKKLADYLQVLVDHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNL 220
RAW+RL++ +K L+ +L+ L+ + Y L DE L LLS N +D
Sbjct: 179 RAWVRLSMEKKLLSRHLKQLLSDHELTKKLYKRYAFLRCDDEKEQFLYHLLSFNAVDYFC 238
Query: 221 CVKEEDLDCQQ 231
Sbjct: 239 FTNVFTTILIP 249
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.7 bits (180), Expect = 2e-14
Identities = 60/421 (14%), Positives = 134/421 (31%), Gaps = 102/421 (24%)
Query: 24 DGEWLCLKQLDDVEVRVRDP------------PELRSPSPEPPLFVARNPVIIERRN--- 68
+ ++L + ++ R P V+R ++ R
Sbjct: 90 NYKFL----MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 69 -LVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKKGL------LG 121
L +++ G +L S + L+ L + ++ K L
Sbjct: 146 ELRPAKNVLI---------DG-VLGSGKTWV-----ALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 122 PKKELWDILQLVEKLNPEA-SDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVL 180
+L++++KL + + T+ +K + +A LR L K + L VL
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 181 VDHRDDILVEYFE--------TDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQG 232
++ ++ F T ++D +SL+ L +E
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSL--- 306
Query: 233 VIDFSLYLRSACYHDHPEEVTS-----------QVEDNMSLVLDQ-KNY-IEELNRHLNA 279
YL D P EV + + D ++ D K+ ++L + +
Sbjct: 307 ---LLKYLDCRP-QDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIES 361
Query: 280 TVGNL-----QTQVESLTTTNALMREDLSIAEKNLRIL-----IQENENLKNQLANSS-- 327
++ L + + L ++ I L ++ + + N+L S
Sbjct: 362 SLNVLEPAEYRKMFDRL----SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 328 ---QHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIE-----LRRQLEDIKMINLEM 379
S +S+ + L+ ++++ E +H+ I++ +D+ L+
Sbjct: 418 EKQPKESTISIPSIYLELKVKLE---NEYALHRS---IVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 380 Y 380
Y
Sbjct: 472 Y 472
Score = 47.5 bits (112), Expect = 6e-06
Identities = 47/315 (14%), Positives = 101/315 (32%), Gaps = 63/315 (20%)
Query: 28 LCLKQLDDVEVRVRD-PPELRSPSPEP-PLFVAR---NPVIIERRNLVNISKLIVKELIE 82
L LK LD R +D P E+ + +P + + VN KL +IE
Sbjct: 306 LLLKYLD---CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL--TTIIE 360
Query: 83 TSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLK-PKKGLLGPKKELW---------DILQL 132
+S L+ + F L V P L +W ++
Sbjct: 361 SSLNV---LEPAEY--RKMFDRLS-VFPPSAHIPTILL----SLIWFDVIKSDVMVVVNK 410
Query: 133 VEK---LNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLAD-YLQVLVDHRDDIL 188
+ K + + + T S+ + ++ + + + D Y DD++
Sbjct: 411 LHKYSLVEKQPKESTISIPSI-----YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 189 VE----YFET------DALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDFSL 238
YF + + + + L ++ + + +++
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 239 YLRSACYHDHPEEVTSQVEDNMSLVLDQKNYIEELNRHL-NATVGNLQTQVESLTTTNAL 297
L+ Y + + LV +++ ++ +L + +L ++ AL
Sbjct: 526 QLKF--YKPY---ICDNDPKYERLVNAILDFLPKIEENLICSKYTDL-LRI-------AL 572
Query: 298 MREDLSIAEKNLRIL 312
M ED +I E+ + +
Sbjct: 573 MAEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 5e-08
Identities = 58/401 (14%), Positives = 121/401 (30%), Gaps = 144/401 (35%)
Query: 40 VRDPPELRSPSPEPPLF--VARNPVII---------------ERRNLVNISKLIVKELIE 82
+ P + +S S LF V + E R+L ++V +LI+
Sbjct: 133 AKRPFDKKSNSA---LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 83 TSQK---------------HGRMLD-------------SDH-------MPL----Q--HF 101
S + + L+ D+ PL Q H+
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 102 FIVLEHVLRHGLKPK------KGLLGPKKEL-----------WD-----ILQLVEKL--- 136
+ + G P KG G + L W+ + + + L
Sbjct: 250 VVTAK---LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 137 -----------NPEASDITASVRDLPTVKTHMGRARAWLRLA---LMQKKLADYLQVLVD 182
+ S + S+ + V + M L+ L Q+++ DY+
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPM--------LSISNLTQEQVQDYVNKTNS 358
Query: 183 H---RDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLDCQQGVIDFS-- 237
H + + +L+ + +V+ G SL ++ L + Q I FS
Sbjct: 359 HLPAGKQVEI------SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 238 ------LYLR-SACYH-DHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVE 289
+L ++ +H + + ++ +++ ++Q V
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLV------------KNNVSFNAKDIQIPVY 460
Query: 290 SLTTTNALMRE-DLSIAEKNLRILIQENENLKNQLANSSQH 329
T + +R SI+E+ + +I+ + + H
Sbjct: 461 D-TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 42.0 bits (99), Expect = 3e-04
Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 1/132 (0%)
Query: 255 QVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQ 314
Q++ + + + E +L T ++ S + E+ A + L +
Sbjct: 932 QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991
Query: 315 ENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLED-IK 373
E L+ +L + + K E E + L+ + EL R++ D K
Sbjct: 992 EIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051
Query: 374 MINLEMYKKLQA 385
I M KKL
Sbjct: 1052 EITETMEKKLVE 1063
Score = 31.2 bits (71), Expect = 0.73
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
Query: 271 EELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHT 330
E R N +V SL A +R++L + + + + + K++ Q
Sbjct: 969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLV 1025
Query: 331 SNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIE-LRRQLED-IKMINLEM 379
S L LK E E L R +H + I E + ++L + K + L++
Sbjct: 1026 SELKEQNTLLKTEKEE----LNRRIHDQAKEITETMEKKLVEETKQLELDL 1072
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 40.6 bits (95), Expect = 0.001
Identities = 20/140 (14%), Positives = 51/140 (36%), Gaps = 3/140 (2%)
Query: 250 EEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNL 309
EE S + N++ ++ + +L + + L+ +++ + + + E
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069
Query: 310 RILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKL---LERDVHQKQDTIIELR 366
L ++ L+ Q+A + A +E + + + + I +L+
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129
Query: 367 RQLEDIKMINLEMYKKLQAL 386
LE K + K+ + L
Sbjct: 1130 EDLESEKAARNKAEKQKRDL 1149
Score = 35.2 bits (81), Expect = 0.039
Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 5/122 (4%)
Query: 250 EEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNL 309
++ + D + + + I EL L + ++++ + A K +
Sbjct: 1063 RKLEGESSDLHEQIAELQAQIAELKAQLA----KKEEELQAALARLEDETSQKNNALKKI 1118
Query: 310 RILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQL 369
R L +L+ L + + + L E+E LE D T ELR
Sbjct: 1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELE-DTLDTTATQQELRGSD 1177
Query: 370 ED 371
Sbjct: 1178 YK 1179
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA
splicing, transcription; NMR {Mus musculus}
Length = 140
Score = 30.3 bits (68), Expect = 0.47
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 10/66 (15%)
Query: 43 PPELRSPSPEPPLFVARNPVIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFF 102
P P P L V + +IE+ + + GR D + H
Sbjct: 25 PTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLF----------GRNPDLCDFTIDHQS 74
Query: 103 IVLEHV 108
H
Sbjct: 75 CSRVHA 80
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 30.5 bits (69), Expect = 0.90
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 260 MSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENL 319
M++V ++I + + N T+ + L + + S + L +EN++L
Sbjct: 1 MNIVAKPTSFISGAVDGVV-DLKNTYTENQHLKERLEELAQLES----EVADLKKENKDL 55
Query: 320 KNQLANSSQHTS 331
K L +
Sbjct: 56 KESLDITDSIRD 67
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 29.9 bits (68), Expect = 0.92
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 11/88 (12%)
Query: 268 NYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSS 327
+EE+ R L L+ + L T E+ K E E LK+ +A+
Sbjct: 7 EAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRK-------EIERLKSVIADLW 59
Query: 328 QHTSNLSVHEVG----LKAEMEVAMKLL 351
E + ++ M+ L
Sbjct: 60 ADILMERAEEFDSMKVVAEVVDADMQAL 87
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 29.2 bits (65), Expect = 1.8
Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 7/140 (5%)
Query: 250 EEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNL 309
E Q+++ + D EE+ R L +++ +E L + E+ +
Sbjct: 142 EIQEIQLKEAKHIAEDADRKYEEVARKLVI----IESDLERAEERAELSEGKCAELEEEI 197
Query: 310 RILIQENENLKNQLANSSQHTSNLSVHEVGLKA---EMEVAMKLLERDVHQKQDTIIELR 366
+ + ++L+ Q SQ L E E + ER V + + +I +L
Sbjct: 198 KTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 257
Query: 367 RQLEDIKMINLEMYKKLQAL 386
+L K+ + ++L
Sbjct: 258 DELYAQKLKYKAISEELDHA 277
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 135
Score = 28.7 bits (63), Expect = 2.0
Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
Query: 251 EVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLR 310
+ + + ++ N ++E L + + +V+ L A E + AE+
Sbjct: 11 NKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEAD 70
Query: 311 ILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLE 370
L +E E+L L + + + + E K +E+ K L + +K + L QL+
Sbjct: 71 KLNKEVEDLTASLFDEANNLVADARME---KYAIEILNKRLTEQLREKDMLLDTLTLQLK 127
Query: 371 DIKMI 375
++K +
Sbjct: 128 NLKKV 132
>2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, PR
structure initiative; 1.80A {Archaeoglobus fulgidus}
Length = 184
Score = 28.3 bits (63), Expect = 2.9
Identities = 7/61 (11%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 30 LKQLDDVEVRVRDPPELRSPSPEPPLFVARNPVIIERRNLVNISKLIVKELIETSQKHGR 89
++ L++ E+R + +++ ++ ++L++ S G
Sbjct: 111 MRNLENYELRRKIVEVAGEIHRIGDIYIQT----------AGLTPSEAEKLVKASLIKGN 160
Query: 90 M 90
M
Sbjct: 161 M 161
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.7
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 9/34 (26%)
Query: 30 LKQLDDVEVRVRDPPELRSPSPEPPLFVARNPVI 63
LK+L + ++ L + P L A +
Sbjct: 22 LKKL---QASLK----LYADDSAPAL--AIKATM 46
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle,
signal transduction, methyl-accepting receptor; 2.5A
{Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Length = 309
Score = 28.4 bits (64), Expect = 3.7
Identities = 13/93 (13%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 285 QTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQLANSSQHTSNLSVHEVGLKAEM 344
++ S+ T A E++S A + + Q A+ + ++ L+ + A
Sbjct: 47 ESISASVQETTAGS-EEISSA-------TKNIADSAQQAASFADQSTQLA--KEAGDALK 96
Query: 345 EV--AMKLLERDVHQKQDTIIELRRQLEDIKMI 375
+V +++ + + ++ E+I
Sbjct: 97 KVIEVTRMISNSAKDVERVVESFQKGAEEITSF 129
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 27.5 bits (60), Expect = 4.7
Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Query: 251 EVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAEKNLR 310
+ + + ++ N ++E L + + +V+ L A E + AE+
Sbjct: 23 NKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEAD 82
Query: 311 ILIQENENLKNQLANSSQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQLE 370
L +E E+L L +N+ K +E+ K L + +K + L QL+
Sbjct: 83 KLNKEVEDLTASLF---DEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLK 139
Query: 371 DIKMINLEM 379
++K + +
Sbjct: 140 NLKKVMHSL 148
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding
anti-sigma factor, oxidative transcription regulation;
2.35A {Mycobacterium tuberculosis}
Length = 92
Score = 26.6 bits (59), Expect = 4.7
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 144 TASVRDLP--TVKTHMGRARAWLRLAL 168
A+ + TVK+ + A LRL L
Sbjct: 59 IATDLGIAEGTVKSRLHYAVRALRLTL 85
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle,
hypothetical protein; 2.8A {Escherichia coli}
Length = 81
Score = 26.1 bits (57), Expect = 5.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 280 TVGNLQTQVESLTTTNALMREDLSIAEKNLRILIQENENLKNQ 322
T+ LQ ++E L N + +++ A+ L +EN +LK Q
Sbjct: 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 63
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 27.9 bits (61), Expect = 5.9
Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 9/121 (7%)
Query: 38 VRVRDPPELRSPSPEPPLFVARNPVIIERRNLV-------NISKLIVKELIETSQKHGRM 90
+ P ++ + + PP + + RR + ++ + + +
Sbjct: 3 RTILQPGQIEAAANIPPHLHQPSRDLFARRGERLLQLAEGHPMGDYLRLVAGLCRLQQAL 62
Query: 91 LDSDHMPLQHFFIVLEHVLRHGLKPKKGLLGPKKELWDIL--QLVEKLNPEASDITASVR 148
LD+ L HG+ P L ++ W L+ A+ +
Sbjct: 63 LDNPPALAPLDPERLRKSREHGMPPLAYDLLVREGAWLPWLDALLAGYPAPANAAVGAAL 122
Query: 149 D 149
+
Sbjct: 123 E 123
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 26.7 bits (60), Expect = 8.0
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 23/118 (19%)
Query: 250 EEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAE--- 306
EE+ + + + K+ I E+NR + L+ +++++ A ++ ++ AE
Sbjct: 18 EELQQTAGRHGDDLRNTKHEISEMNRMIQR----LRAEIDNVKKQCANLQNAIADAEQRG 73
Query: 307 ----KNLRILIQENENLKNQLANSSQHTSNLSVHE------VGLKAEMEVAM--KLLE 352
K+ R + E L+ L + Q + L + E L ++E+A KLLE
Sbjct: 74 ELALKDARNKLAE---LEEALQKAKQDMARL-LREYQELMNTKLALDVEIATYRKLLE 127
>3fmt_A Protein SEQA; protein-DNA complex, hemimethylated GATC, DNA
replication; HET: 6MA; 2.98A {Escherichia coli}
Length = 162
Score = 26.8 bits (59), Expect = 8.9
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 13/86 (15%)
Query: 185 DDILVEYFETDALLMSDEAIVILGKLLSLN-------------VIDCNLCVKEEDLDCQQ 231
DD L Y + + + IL ++L + V + ++ Q+
Sbjct: 7 DDELYSYIASHTKHIGESRSDILRRMLKFSAASQKPVKTIKDKVRAMRELLLSDEYAEQK 66
Query: 232 GVIDFSLYLRSACYHDHPEEVTSQVE 257
++ + L S Y + E
Sbjct: 67 RAVNRFMLLLSTLYSLDAQAFAEATE 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.383
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,857,800
Number of extensions: 367622
Number of successful extensions: 773
Number of sequences better than 10.0: 1
Number of HSP's gapped: 754
Number of HSP's successfully gapped: 48
Length of query: 386
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 291
Effective length of database: 4,049,298
Effective search space: 1178345718
Effective search space used: 1178345718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)