RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1888
         (386 letters)



>d2cxfa1 a.256.1.1 (A:83-249) Rap2 interacting protein X (RUFY3)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 167

 Score =  169 bits (430), Expect = 3e-52
 Identities = 94/167 (56%), Positives = 128/167 (76%), Gaps = 1/167 (0%)

Query: 62  VIIERRNLVNISKLIVKELIETSQKHGRMLDSDHMPLQHFFIVLEHVLRHGLKPKKGLLG 121
           +  ER NL+N++KL +K LIE++   GR LDSD+ PLQ FF+V+EH L+HGLK KK  LG
Sbjct: 1   MANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLG 60

Query: 122 PKKELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKKLADYLQVLV 181
             K  W  L+LVEKL PEA++ITASV+DLP +KT +GR RAWLRLALMQKKL++Y++ L+
Sbjct: 61  QNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALI 120

Query: 182 DHRDDILVEYFETDALLMSDEAIVILGKLLSLNVIDCNLCVKEEDLD 228
           + + ++L E++E +AL+M +E  +I G L+ LNVID N C+K EDLD
Sbjct: 121 NKK-ELLSEFYEVNALMMEEEGAIIAGLLVGLNVIDANFCMKGEDLD 166


>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter
           capsulatus [TaxId: 1061]}
          Length = 160

 Score = 27.7 bits (61), Expect = 1.6
 Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 5/77 (6%)

Query: 314 QENENLKNQLANS-----SQHTSNLSVHEVGLKAEMEVAMKLLERDVHQKQDTIIELRRQ 368
           +  E  +  L                  +   +    V+  + E  +  ++  +  L  Q
Sbjct: 78  RIGEGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEGHVDFLETQ 137

Query: 369 LEDIKMINLEMYKKLQA 385
           +     +  + +  L A
Sbjct: 138 ISLYDRLGPQGFALLNA 154


>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 327

 Score = 28.3 bits (62), Expect = 1.6
 Identities = 7/51 (13%), Positives = 20/51 (39%)

Query: 122 PKKELWDILQLVEKLNPEASDITASVRDLPTVKTHMGRARAWLRLALMQKK 172
           P+++ ++       ++P ++ I      LP     +   + +L   L +  
Sbjct: 9   PQQKHYESKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHESG 59


>d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein
           {Prosthecochloris aestuarii, strain 2k [TaxId: 1102]}
          Length = 359

 Score = 28.0 bits (62), Expect = 2.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 216 IDCNLCVKEEDLDCQQGVIDFSLYLRSA 243
            DCN+ +  + LD Q+GV+ F+  + S 
Sbjct: 39  TDCNIRIDAKPLDAQKGVVRFTTKIESV 66


>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 142

 Score = 25.9 bits (57), Expect = 5.0
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 308 NLRILIQENENLKNQLANSSQHTSNLSVHEVGLK--AEMEVAMKLLERDVHQKQDTIIEL 365
            LR L+   +     L  +S H       ++      E+   MKL ++ V        E 
Sbjct: 53  ALRTLLATVDETIPLL-PASTHREIEMAQKLLNSDLGELINKMKLAQQYVMTSLQQ--EY 109

Query: 366 RRQL 369
           ++Q+
Sbjct: 110 KKQM 113


>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 25.6 bits (55), Expect = 7.0
 Identities = 16/85 (18%), Positives = 30/85 (35%)

Query: 16  LCNFRVSVDGEWLCLKQLDDVEVRVRDPPELRSPSPEPPLFVARNPVIIERRNLVNISKL 75
            C  RV +   WL L+   +V V        +  S   PL ++RN  ++++      + +
Sbjct: 6   WCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIM 65

Query: 76  IVKELIETSQKHGRMLDSDHMPLQH 100
             K L        R+       +  
Sbjct: 66  DNKSLNGVWLNRARLEPLRVYSIHQ 90


>d1f1sa2 b.1.18.2 (A:171-248) Hyaluronate lyase precatalytic domain
           {Streptococcus agalactiae [TaxId: 1311]}
          Length = 78

 Score = 24.6 bits (53), Expect = 7.7
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 247 DHPEEVTSQVEDNMSLVLDQKNYIEELNRHLNATVGNLQTQVESLTTTNALMREDLSIAE 306
           +HP+ VT+Q+E +++  L++     + +     T  +L   V  +   NA     + I++
Sbjct: 2   EHPQPVTTQIEKSVNTALNKNYVFNKADYQYTLTNPSLGKIVGGILYPNATGSTTVKISD 61

Query: 307 KN 308
           K+
Sbjct: 62  KS 63


>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
          Length = 101

 Score = 24.7 bits (54), Expect = 9.6
 Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 300 EDLS-IAEKNLRILIQE--NENLKNQLANSSQHT-----SNLSV-HEVGLKAEMEVAMKL 350
           ED+  + +++++++++E    +L   L  +S         N+S      LK E+E    +
Sbjct: 5   EDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPV 64

Query: 351 LERDVHQKQDTIIELRRQLEDIKMINLE 378
             +DV + Q  II + R+LE+   I + 
Sbjct: 65  RLKDVEEAQQKIINIIRRLEEAGEIVIA 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,400,482
Number of extensions: 67365
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 17
Length of query: 386
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,213,086
Effective search space: 362712714
Effective search space used: 362712714
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)