BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1889
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 63/92 (68%)
Query: 36 VQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGAR 95
+Q+ I+ +VIFSK+ C YC MAK +F + V K VELD + G+ QD L ++TG R
Sbjct: 42 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGER 101
Query: 96 SVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+VPR+FVNG FIGG TD L+++G+L PLV
Sbjct: 102 TVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 133
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 101 bits (252), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 63/92 (68%)
Query: 36 VQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGAR 95
+Q+ I+ +VIFSK+ C YC MAK +F + V K VELD + G+ QD L ++TG R
Sbjct: 28 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGER 87
Query: 96 SVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+VPR+FVNG FIGG TD L+++G+L PLV
Sbjct: 88 TVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 119
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 63/92 (68%)
Query: 36 VQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGAR 95
+Q+ I+ +VIFSK+ C YC MAK +F + V K VELD + G+ QD L ++TG R
Sbjct: 20 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGER 79
Query: 96 SVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+VPR+FVNG FIGG TD L+++G+L PLV
Sbjct: 80 TVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 111
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 36 VQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQDVLLEITGA 94
V+ +A +V++SK++C Y K +F++L V P VELD G IQ VL +TG
Sbjct: 11 VKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLTGQ 70
Query: 95 RSVPRVFVNGKFIGGGTDVKALYEKGELHPLV 126
+VP VF+ GK IGG TD LY KGEL PL+
Sbjct: 71 HTVPNVFIGGKHIGGCTDTVKLYRKGELEPLL 102
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 66/97 (68%), Gaps = 6/97 (6%)
Query: 36 VQDLIASEKIVIFSKSYCPYCKMA-KDVFQKLKVTPKT----VELDHRDDGDSIQDVLLE 90
V+DLI +++ + +K+YCPYCK +FQ+L V PK+ +ELD +G IQD L E
Sbjct: 10 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNV-PKSKALVLELDEMSNGSEIQDALEE 68
Query: 91 ITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
I+G ++VP V++NGK IGG +D++ L + G+L +++
Sbjct: 69 ISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 105
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Query: 25 SKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMA-KDVFQKLKVTPKT----VELDHRD 79
S +++ + V+DLI +++ + +K+YCPYCK +FQ+L V PK+ +ELD
Sbjct: 19 SHMVSQETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNV-PKSKALVLELDEMS 77
Query: 80 DGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+G IQD L EI+G ++VP V++NGK IGG +D++ L + G+L +++
Sbjct: 78 NGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 125
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 65/97 (67%), Gaps = 6/97 (6%)
Query: 36 VQDLIASEKIVIFSKSYCPYCKMA-KDVFQKLKVTPKT----VELDHRDDGDSIQDVLLE 90
V+DLI +++ + +K+YCPY K +FQ+L V PK+ +ELD +G IQD L E
Sbjct: 13 VKDLIGQKEVFVAAKTYCPYSKATLSTLFQELNV-PKSKALVLELDEMSNGSEIQDALEE 71
Query: 91 ITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
I+G ++VP V++NGK IGG +D++ L + G+L +++
Sbjct: 72 ISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 108
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%)
Query: 39 LIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVP 98
LI ++VIFSKSYCP+ K++F L V +ELD DDG +Q+VL EIT ++VP
Sbjct: 13 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVP 72
Query: 99 RVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+FVN +GG Y+ G L L+Q
Sbjct: 73 NIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 101
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 23 ASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGD 82
AS + ++ A K+ ++L +S +V+FSK+YC YC K + ++ + K VELD DG
Sbjct: 2 ASKQELDAALKK-AKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGS 60
Query: 83 SIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+Q L TG +VP VF+ GK IGG V +++ EL PL+Q
Sbjct: 61 QLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQ 105
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 28 MNPA--SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQ 85
M PA + Q+++ + S +++FSK+ CPYCK KDV + K+ T+ELD +G +IQ
Sbjct: 1 MPPADGTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQ 60
Query: 86 DVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
L + +VP++FV GKFIG V Y EL +V
Sbjct: 61 KCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVN 102
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 28 MNPA--SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQ 85
M PA + Q+++ + S +++FSK+ CPYCK KDV + K+ T+ELD +G +IQ
Sbjct: 1 MPPADGTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQ 60
Query: 86 DVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
L + +VP++FV GKFIG V Y EL +V
Sbjct: 61 KCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVN 102
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 28 MNPA--SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQ 85
M PA + Q+++ + S +++FSK+ CPYCK KDV + K+ T+ELD +G +IQ
Sbjct: 1 MPPADGTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQ 60
Query: 86 DVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
L + +VP++FV GKFIG V Y EL +V
Sbjct: 61 KCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVN 102
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%)
Query: 36 VQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGAR 95
++L +S +V+FSK+YC YC K + ++ + K VELD DG +Q L TG
Sbjct: 13 AKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRG 72
Query: 96 SVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+VP VF+ GK IGG V +++ EL PL+Q
Sbjct: 73 TVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQ 104
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 6/86 (6%)
Query: 34 QFVQDLIASEKIVIFSKSYCPYCKMAKD-VFQKLKVTPKT----VELDHRDDGDSIQDVL 88
+ V+DLIA +I + SK+YCPYC A + +F+KLKV P++ ++L+ +G IQ L
Sbjct: 16 KHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKV-PRSKVLVLQLNDMKEGADIQAAL 74
Query: 89 LEITGARSVPRVFVNGKFIGGGTDVK 114
EI G R+VP +++NGK IGG D++
Sbjct: 75 YEINGQRTVPNIYINGKHIGGNDDLQ 100
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 33 KQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQDVLLEI 91
++ ++ + +VI+SK++C YC K +F++L V P VELD G +Q VL +
Sbjct: 9 EESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERL 68
Query: 92 TGARSVPRVFVNGKFIGGGTDVKALYEKGEL 122
TG +VP VFV GK IGG TD L KG+L
Sbjct: 69 TGQHTVPNVFVCGKHIGGCTDTVKLNRKGDL 99
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 60/94 (63%), Gaps = 3/94 (3%)
Query: 32 SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTP---KTVELDHRDDGDSIQDVL 88
++ FV I K+V+F K CP+C+ +++ +L + V++ D + IQD L
Sbjct: 1 AQAFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYL 60
Query: 89 LEITGARSVPRVFVNGKFIGGGTDVKALYEKGEL 122
++TGAR+VPRVF+ + IGG TD+++++++GEL
Sbjct: 61 QQLTGARTVPRVFIGKECIGGCTDLESMHKRGEL 94
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 32 SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTP---KTVELDHRDDGDSIQDVL 88
+++FV I K+V+F K CPYC+ A+++ +L + + V++ + + IQD L
Sbjct: 2 AQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYL 61
Query: 89 LEITGARSVPRVFVNGKFIGGGTDVKALYEKGEL 122
++TGAR+VPRVF+ IGG +D+ +L + GEL
Sbjct: 62 QQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGEL 95
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 6/86 (6%)
Query: 34 QFVQDLIASEKIVIFSKSYCPYCKMA-KDVFQKLKVTPKT----VELDHRDDGDSIQDVL 88
+ V+DLIA +I + SK+YCPY A +F+KLKV P++ ++L+ +G IQ L
Sbjct: 8 KHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKV-PRSKVLVLQLNDMKEGADIQAAL 66
Query: 89 LEITGARSVPRVFVNGKFIGGGTDVK 114
EI G R+VP +++NGK IGG D++
Sbjct: 67 YEINGQRTVPNIYINGKHIGGNDDLQ 92
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 6/86 (6%)
Query: 34 QFVQDLIASEKIVIFSKSYCPYCKMA-KDVFQKLKVTPKT----VELDHRDDGDSIQDVL 88
+ V+DLIA +I + SK+YCPY A +F+KLKV P++ ++L+ +G IQ L
Sbjct: 252 KHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKV-PRSKVLVLQLNDMKEGADIQAAL 310
Query: 89 LEITGARSVPRVFVNGKFIGGGTDVK 114
EI G R+VP +++NGK IGG D++
Sbjct: 311 YEINGQRTVPNIYINGKHIGGNDDLQ 336
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 32 SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTP---KTVELDHRDDGDSIQDVL 88
+++FV I K+V+F K CPY + A+++ +L + + V++ + + IQD L
Sbjct: 1 AQEFVNSKIQPGKVVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYL 60
Query: 89 LEITGARSVPRVFVNGKFIGGGTDVKALYEKGEL 122
++TGAR+VPRVF+ IGG +D+ +L + GEL
Sbjct: 61 QQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGEL 94
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 32 SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKL---KVTPKTVELDHRDDGDSIQDVL 88
+++FVQ +A+ K+ IF K CP+C+ A D+ K + + V++ + ++D
Sbjct: 8 AEEFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYF 67
Query: 89 LEITGARSVPRVFVNGKFIGGGTDV 113
+ITG ++VPR+F IGG +D+
Sbjct: 68 EQITGGKTVPRIFFGKTSIGGYSDL 92
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 45 IVIFSKSYCPYCKMAKDVFQ-KLKVTPK--TVELDHRDDGDSIQDVLLEITGARSVPRVF 101
I+IFSKS C Y K K++ + + + P +ELD G+ +Q+ + +TG +VP +
Sbjct: 16 IIIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLL 75
Query: 102 VNGKFIGGGTDVKALYEKGEL 122
VNG GG ++K L+ +G+L
Sbjct: 76 VNGVSRGGNEEIKKLHTQGKL 96
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 32 SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKL---KVTPKTVELDHRDDGDSIQDVL 88
+++FVQ +A+ K+ IF K P+C+ A D+ K + + V++ + ++D
Sbjct: 8 AEEFVQQRLANNKVTIFVKYTXPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYF 67
Query: 89 LEITGARSVPRVFVNGKFIGGGTDV 113
+ITG ++VPR+F IGG +D+
Sbjct: 68 EQITGGKTVPRIFFGKTSIGGYSDL 92
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 43 EKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSI-QDVLLEITGARSVPRVF 101
++I+++++ CPYCK A+D+ K K V+ D S+ Q+++ G + P++F
Sbjct: 6 KEIILYTRPNCPYCKRARDLLDK-----KGVKYTDIDASTSLRQEMVQRANGRNTFPQIF 60
Query: 102 VNGKFIGGGTDVKALYEKGELHPLVQ 127
+ +GG D+ AL KG+L L+Q
Sbjct: 61 IGDYHVGGCDDLYALENKGKLDSLLQ 86
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSI-QDVLLEITGARSVPRVFVN 103
+ I++K CPYC AK + V+ + + +D G++ ++ +++ +G +VP++F++
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPID----GNAAKREEMIKRSGRTTVPQIFID 58
Query: 104 GKFIGGGTDVKALYEKGELHPLVQ 127
+ IGG D+ AL +G L PL++
Sbjct: 59 AQHIGGYDDLYALDARGGLDPLLK 82
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 42 SEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVF 101
S KI I++ S CP+C A + ++ V + +D D ++ + + G RS+P++F
Sbjct: 15 SAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCID--GDNEAREAMAARANGKRSLPQIF 72
Query: 102 VNGKFIGGGTDVKALYEKGELHPLVQ 127
++ + IGG D+ AL G+L PL+
Sbjct: 73 IDDQHIGGCDDIYALDGAGKLDPLLH 98
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 43 EKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV 102
E I IF+K CP+C AK + ++ + + L H D+ + ++G +VP+VF+
Sbjct: 170 ESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGH----DATIVSVRAVSGRTTVPQVFI 225
Query: 103 NGKFIGGGTDVKALY 117
GK IGG D++ +
Sbjct: 226 GGKHIGGSDDLEKYF 240
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSI-QDVLLEITGARSVPRVFVN 103
+ I++K CPY AK + V+ + + +D G++ ++ +++ +G +VP++F++
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVSFQELPID----GNAAKREEMIKRSGRTTVPQIFID 58
Query: 104 GKFIGGGTDVKALYEKGELHPLVQ 127
+ IGG D+ AL +G L PL++
Sbjct: 59 AQHIGGYDDLYALDARGGLDPLLK 82
>pdb|1EGO|A Chain A, Nmr Structure Of Oxidized Escherichia Coli Glutaredoxin:
Comparison With Reduced E. Coli Glutaredoxin And
Functionally Related Proteins
pdb|1EGR|A Chain A, Sequence-Specific 1h N.M.R. Assignments And Determination
Of The Three-Dimensional Structure Of Reduced
Escherichia Coli Glutaredoxin
Length = 85
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVE---LDHRDDGDSIQDVLLEITG--ARSVP 98
+ VIF +S CPYC AKD+ +KL + +D R +G + +D L + G +VP
Sbjct: 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKED-LQQKAGKPVETVP 60
Query: 99 RVFVNGKFIGGGTDVKAL 116
++FV+ + IGG TD A
Sbjct: 61 QIFVDQQHIGGYTDFAAW 78
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDS--IQDVLLEITGARSVPRVFV 102
++I+++ CPYC AK + + K E + D + ++ + E +G + P++F+
Sbjct: 8 VIIYTRPGCPYCARAKALLAR-----KGAEFNEIDASATPELRAEMQERSGRNTFPQIFI 62
Query: 103 NGKFIGGGTDVKALYEKGELHPLVQ 127
+GG D+ AL ++G+L L++
Sbjct: 63 GSVHVGGCDDLYALEDEGKLDSLLK 87
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 28 MNPASKQFVQDLIASEKIVIFSKSY--CPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQ 85
+ PA K + ++ S K+V+F K P C ++ V Q LK E + + + ++
Sbjct: 3 LTPALKTTLDKVVTSHKVVLFMKGTKDFPQCGFSQTVVQILKSLNAPFESVNILENELLR 62
Query: 86 DVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
L E + + P+++++G+F GG Y+ GEL V+
Sbjct: 63 QGLKEYSSWPTFPQLYIDGEFFGGCDITVEAYKSGELQEQVE 104
>pdb|1QFN|A Chain A, Glutaredoxin-1-Ribonucleotide Reductase B1 Mixed Disulfide
Bond
pdb|1GRX|A Chain A, Structure Of E. Coli Glutaredoxin
Length = 85
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVE---LDHRDDGDSIQDVLLEITG--ARSVP 98
+ VIF +S CPY AKD+ +KL + +D R +G + +D L + G +VP
Sbjct: 2 QTVIFGRSGCPYSVRAKDLAEKLSNERDDFQYQYVDIRAEGITKED-LQQKAGKPVETVP 60
Query: 99 RVFVNGKFIGGGTDVKAL 116
++FV+ + IGG TD A
Sbjct: 61 QIFVDQQHIGGYTDFAAW 78
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 27 VMNPASKQFVQDLIASEKIVIFSKSY--CPYCKMAKDVFQKLKVTPKTVELDHRDDGDSI 84
+ P K ++ L+ SEK+V+F K P C + V Q LK E + + + +
Sbjct: 2 ALTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEML 61
Query: 85 QDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+ L E + + P++++ G+F GG ++ GEL V+
Sbjct: 62 RQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVE 104
>pdb|3LGC|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis
pdb|3MSZ|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
pdb|3MSZ|B Chain B, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
Length = 89
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 42 SEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDH-------RDDGDSIQDVLLEITGA 94
+ K+ I++++ CPYC AK F++ + +D D+ + V+ I+
Sbjct: 3 AXKVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEXNQSGKVIFPIS-- 60
Query: 95 RSVPRVFVNGKFIGGGTDVKALYEK 119
+VP++F++ + IGG T++KA +K
Sbjct: 61 -TVPQIFIDDEHIGGFTELKANADK 84
>pdb|3S4W|A Chain A, Structure Of The Fanci-Fancd2 Complex
pdb|3S4Z|A Chain A, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|B Chain B, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|C Chain C, Structure Of A Y Dna-Fanci Complex
pdb|3S51|A Chain A, Structure Of Fanci
pdb|3S51|B Chain B, Structure Of Fanci
pdb|3S51|C Chain C, Structure Of Fanci
pdb|3S51|D Chain D, Structure Of Fanci
Length = 1308
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 1 MGFLDLEQFNFGLKTSFL--ETLGASSKVMNPASKQFVQDLIASEKIVI-FSKSYCPYCK 57
+ L E+ +F K + L L S+++ P S QFVQ L + KI +S+ +CK
Sbjct: 963 LNLLSSEEDDFNSKEALLLIAVLSTLSRLLEPTSPQFVQMLSWTSKICKEYSQEDASFCK 1022
Query: 58 MAKDVFQKLKV---TPKTVELDHRDD-----GDSIQDVLLEIT 92
++F L V +P T+ D D GD QDV +E T
Sbjct: 1023 SLMNLFFSLHVLYKSPVTLLRDLSQDIHGQLGDIDQDVEIEKT 1065
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 33 KQFVQDLIASEKIVIFSKSY-----CPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDV 87
++ ++D I S +V+F K C + + + V P + + +++
Sbjct: 6 RKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREG 65
Query: 88 LLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+ E + ++P+++VN +FIGG + ++ GEL L++
Sbjct: 66 IKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLE 105
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 36 VQDLIASEKIVIFSKSY--CPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG 93
+Q IA I+++ K P C + Q L + I+ L +
Sbjct: 28 IQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYAN 87
Query: 94 ARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+ P+++V+G+ +GG V +Y++GEL L++
Sbjct: 88 WPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIK 121
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 36 VQDLIASEKIVIFSKSY--CPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG 93
+Q IA I+++ K P C + Q L + I+ L +
Sbjct: 8 IQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYAN 67
Query: 94 ARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+ P+++V+G+ +GG V +Y++GEL L++
Sbjct: 68 WPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIK 101
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 28 MNPASKQFVQDLIASEKIVIFSKSYC--PYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQ 85
M P ++ ++ L +++F K C +K + + L T E + + ++
Sbjct: 2 MAPKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVR 61
Query: 86 DVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
L + + P+++V G+ +GG VK L E GEL P+++
Sbjct: 62 QGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILR 103
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 32 SKQFVQDLIASEKIVIFSKSYC--PYCKMAKDVFQKLKV--TPKTVELDHRDDGDSIQDV 87
S + + L+ +K+V+F K P C + V Q L++ + DD + Q +
Sbjct: 9 SAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGI 68
Query: 88 LLEITGARSVPRVFVNGKFIGGGTDVKALYEKGEL 122
+ + ++P+V++NG+F+GG + +++ G+L
Sbjct: 69 K-DYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDL 102
>pdb|3GL5|A Chain A, Crystal Structure Of Probable Dsba Oxidoreductase
Sco1869 From Streptomyces Coelicolor
Length = 239
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQK----------LKVTPKTVELDHRDDGDSIQDVLLEIT 92
++ I+S CP+C + K F+K ++V ++ ELD D +Q VL +T
Sbjct: 4 RVEIWSDIACPWCYVGKARFEKALAAFPHRDGVEVVHRSFELDPGRAKDDVQPVLTXLT 62
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%)
Query: 56 CKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKA 115
C +K + + L T E + + ++ L + + P+++V G +GG VK
Sbjct: 30 CGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVKE 89
Query: 116 LYEKGELHPLVQ 127
L + GEL P+++
Sbjct: 90 LKDNGELLPILK 101
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 56 CKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNG 104
K+A ++F+K+K P+ + + H + + + DV++ + +V +V +NG
Sbjct: 324 AKLA-EIFRKVKSIPQMIIITHHRELEDVADVIINVKKDGNVSKVKING 371
>pdb|1NHO|A Chain A, Structural And Functional Characterization Of A
Thioredoxin-Like Protein From Methanobacterium
Thermoautotrophicum
Length = 85
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 21/79 (26%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQ----DVLLEIT-----GA 94
I +F+ CPYC MA +V + K ++ GD I D++++ G
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAK----------KEFGDKIDVEKIDIMVDREKAIEYGL 53
Query: 95 RSVPRVFVNG--KFIGGGT 111
+VP + +NG +F+G +
Sbjct: 54 MAVPAIAINGVVRFVGAPS 72
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 41 ASEKIVI--FSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVP 98
A +K+V+ FS ++C CKM K F L V D D+ QDV + G R +P
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDA-QDVAPKY-GIRGIP 75
Query: 99 R--VFVNGKFIGGGTDVKALYEKGEL 122
+F NG+ T V AL KG+L
Sbjct: 76 TLLLFKNGEV--AATKVGAL-SKGQL 98
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 34 QFVQDLIASEKIVI--FSKSYCPYCKMAKDVFQKLKVTPKTVELD-HRDDGDSIQDVLLE 90
QF Q + +K+V+ F ++C CKM VF+K+ TP ++ ++ D D + E
Sbjct: 25 QFKQ-VTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQE 83
Query: 91 ITGARSVPR--VFVNGKFI 107
+ G R++P F NG+ I
Sbjct: 84 V-GIRAMPTFVFFKNGQKI 101
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 42 SEKIVI--FSKSYCPYCKMAKDVFQKL 66
S+K+++ F+ S+CP CKM +F +L
Sbjct: 25 SQKLIVVDFTASWCPPCKMIAPIFAEL 51
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 42 SEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVF 101
S+ IV F K+ CP+CK + V K V + D ++ +++ E+ R VF
Sbjct: 20 SDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSV-DSEARPELMKELGFERVPTLVF 78
Query: 102 V-NGKF------IGGGTDVKALY 117
+ +GK I +++ALY
Sbjct: 79 IRDGKVAKVFSGIMNPRELQALY 101
>pdb|1ZYN|A Chain A, Oxidized Structure Of The N-Terminal Domain Of Salmonella
Typhimurium Ahpf
pdb|1ZYN|B Chain B, Oxidized Structure Of The N-Terminal Domain Of Salmonella
Typhimurium Ahpf
pdb|1ZYP|A Chain A, Synchrotron Reduced Form Of The N-Terminal Domain Of
Salmonella Typhimurium Ahpf
pdb|1ZYP|B Chain B, Synchrotron Reduced Form Of The N-Terminal Domain Of
Salmonella Typhimurium Ahpf
Length = 202
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 48 FSKSYCPYCKMAKDVFQKLKV----TPKTVELDHRD-DGDSIQDVLLEITGARSVPRVFV 102
F Y C DV Q L + P+ + H DG + Q+ + E VP VFV
Sbjct: 121 FETYYSLSCHNCPDVVQALNLMAVLNPR---IKHTAIDGGTFQNEITE-RNVMGVPAVFV 176
Query: 103 NGKFIGGG 110
NGK G G
Sbjct: 177 NGKEFGQG 184
>pdb|2LQO|A Chain A, Mrx1 Reduced
pdb|2LQQ|A Chain A, Oxidized Mrx1
Length = 92
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 40 IASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDH-RDDGDSIQDVLLEITGARSVP 98
+ + + I++ S+C YC K ++ V+++H R + + V G R+VP
Sbjct: 1 MVTAALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSV---NGGNRTVP 57
Query: 99 RVFVNGKFIGGGT 111
V KF G T
Sbjct: 58 TV----KFADGST 66
>pdb|1A8L|A Chain A, Protein Disulfide Oxidoreductase From Archaeon Pyrococcus
Furiosus
Length = 226
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 32 SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKV 68
+KQ ++++ +I++F CPYC +A + K +
Sbjct: 125 TKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAI 161
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 48 FSKSYCPYCKMAKDVFQKLKV----TPKTVELDHRD-DGDSIQDVLLEITGARSVPRVFV 102
F Y C DV Q L + P+ + H DG + Q+ + E VP VFV
Sbjct: 121 FETYYSLSCHNCPDVVQALNLMAVLNPR---IKHTAIDGGTFQNEITE-RNVMGVPAVFV 176
Query: 103 NGKFIGGG 110
NGK G G
Sbjct: 177 NGKEFGQG 184
>pdb|1WJK|A Chain A, Solution Structure Of Hypothetical Protein C330018d20rik
From Mus Musculus
Length = 100
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKLK 67
+ +F+K+ CP C AK+V Q K
Sbjct: 19 LTLFTKAPCPLCDEAKEVLQPYK 41
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 41 ASEKIVI--FSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVP 98
A +K+V+ FS ++C CKM K F L V + D D QDV E + +S+P
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNV-IFLEVDVDDCQDVASE-SEVKSMP 75
Query: 99 --RVFVNGKFIG 108
+ F G+ +G
Sbjct: 76 TFQFFKKGQKVG 87
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 41 ASEKIVI--FSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVP 98
A +K+V+ FS ++C CKM K F L V + D D QDV E +S+P
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNV-IFLEVDVDDCQDVASECE-VKSMP 75
Query: 99 --RVFVNGKFIG 108
+ F G+ +G
Sbjct: 76 TFQFFKKGQKVG 87
>pdb|2G2Q|A Chain A, The Crystal Structure Of G4, The Poxviral Disulfide
Oxidoreductase Essential For Cytoplasmic Disulfide Bond
Formation
pdb|2G2Q|B Chain B, The Crystal Structure Of G4, The Poxviral Disulfide
Oxidoreductase Essential For Cytoplasmic Disulfide Bond
Formation
pdb|2G2Q|C Chain C, The Crystal Structure Of G4, The Poxviral Disulfide
Oxidoreductase Essential For Cytoplasmic Disulfide Bond
Formation
Length = 124
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELD----HRDDGDS 83
++IF K YC C+ D ++LK + +D DGDS
Sbjct: 5 LIIFGKPYCSICENVSDAVEELKSEYDILHVDILSFFLKDGDS 47
>pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630 Crystallized With
Magnesium Formate
pdb|4DGT|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630 Crystallized With
Magnesium Formate
pdb|4DQ6|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630
pdb|4DQ6|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630
Length = 391
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 30 PASKQFVQDLI-ASEKIVIFSKSYCPYCKMAKDVFQKLKVTP-KTVE-----LDHRDDGD 82
PA + +L A++KI+I Y P+ + K+ ++L ++P + +E +D+ D +
Sbjct: 101 PAISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIEN 160
Query: 83 SIQDVLLEI 91
I+DV L I
Sbjct: 161 KIKDVKLFI 169
>pdb|3IC4|A Chain A, The Crystal Structure Of The Glutaredoxin(Grx-1) From
Archaeoglobus Fulgidus
Length = 92
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLE---ITGARSVPRV 100
+++ + S CP+CK + ++ V + + +D + +G+ + V+ + I+G+ SVP V
Sbjct: 13 EVLXYGLSTCPHCKRTLEFLKREGVDFEVIWID-KLEGEERKKVIEKVHSISGSYSVPVV 71
Query: 101 FVNGKFIGGGTDVK 114
K + G + K
Sbjct: 72 VKGDKHVLGYNEEK 85
>pdb|3GV1|A Chain A, Crystal Structure Of Disulfide Interchange Protein From
Neisseria Gonorrhoeae
pdb|3GV1|B Chain B, Crystal Structure Of Disulfide Interchange Protein From
Neisseria Gonorrhoeae
pdb|3GV1|C Chain C, Crystal Structure Of Disulfide Interchange Protein From
Neisseria Gonorrhoeae
Length = 147
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQK 65
K+ +FS CP+CK + F+K
Sbjct: 17 KVAVFSDPDCPFCKRLEHEFEK 38
>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
Length = 226
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 32 SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKV 68
SK+ V + +I+IF CPYC +A + K +
Sbjct: 125 SKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAI 161
>pdb|3FEU|A Chain A, Crystal Structure Of Dsba-like Thioredoxin Domain Vf_a0457
From Vibrio Fischeri
Length = 185
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 88 LLEITGARSVPRVFVNGKF---IGGGTDVKAL 116
L E +G SVP VNGK+ IGG D K +
Sbjct: 144 LSEKSGISSVPTFVVNGKYNVLIGGHDDPKQI 175
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 41 ASEKIVI--FSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVP 98
A +K+V+ FS ++C CKM K F L V + D D QDV E ++ P
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNV-IFLEVDVDDAQDVASE-AEVKATP 75
Query: 99 --RVFVNGKFIG 108
+ F G+ +G
Sbjct: 76 TFQFFKKGQKVG 87
>pdb|1RM6|B Chain B, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|E Chain E, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|B Chain B, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|E Chain E, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 324
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 80 DGDSIQDVLLEITGARSVPRVFVNGKFIGGGTD 112
DGD I + + ITG+ S P + +GG D
Sbjct: 245 DGDRIAGLRVAITGSNSAPLMVPVDALLGGNWD 277
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 41 ASEKIVI--FSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVP 98
A +K+V+ FS ++C CKM K F L V + D D QDV E + +P
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNV-IFLEVDVDDCQDVASECE-VKCMP 75
Query: 99 --RVFVNGKFIG 108
+ F G+ +G
Sbjct: 76 TFQFFKKGQKVG 87
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin
Carboxyl-terminal Hydrolase 8
Length = 396
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 14 KTSFLETLGASSKVMNPASKQFVQDLI----ASEKIVIFSKSYCPYCKMAKDVFQKLKV 68
K+ E S + SK +QD + EK+ ++ YC +C+ +D +K+++
Sbjct: 228 KSRTFEAFXYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEI 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,657,758
Number of Sequences: 62578
Number of extensions: 131737
Number of successful extensions: 521
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 72
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)