Query psy1889
Match_columns 127
No_of_seqs 122 out of 1051
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 18:50:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 99.9 6.5E-26 1.4E-30 141.5 9.3 91 37-127 2-92 (99)
2 PHA03050 glutaredoxin; Provisi 99.9 3.7E-25 8E-30 140.0 11.0 95 33-127 3-100 (108)
3 PRK10824 glutaredoxin-4; Provi 99.9 3E-24 6.4E-29 136.7 9.9 93 32-127 4-101 (115)
4 KOG1752|consensus 99.9 1.1E-23 2.4E-28 131.6 10.4 95 33-127 4-98 (104)
5 TIGR00365 monothiol glutaredox 99.9 2E-23 4.3E-28 129.8 10.3 90 34-126 3-97 (97)
6 TIGR02180 GRX_euk Glutaredoxin 99.9 4.5E-22 9.7E-27 120.0 9.6 82 45-126 1-84 (84)
7 cd03028 GRX_PICOT_like Glutare 99.9 8.8E-22 1.9E-26 120.9 9.8 84 37-123 2-90 (90)
8 PRK10638 glutaredoxin 3; Provi 99.9 3.1E-21 6.8E-26 116.7 10.0 82 43-127 2-83 (83)
9 TIGR02181 GRX_bact Glutaredoxi 99.9 2.4E-21 5.2E-26 116.0 9.1 79 45-126 1-79 (79)
10 cd03419 GRX_GRXh_1_2_like Glut 99.9 8.8E-21 1.9E-25 114.0 10.5 82 44-125 1-82 (82)
11 PTZ00062 glutaredoxin; Provisi 99.9 1.2E-20 2.6E-25 131.1 12.5 113 10-127 82-199 (204)
12 cd03418 GRX_GRXb_1_3_like Glut 99.8 1.9E-19 4.1E-24 106.5 9.5 74 44-120 1-75 (75)
13 COG0695 GrxC Glutaredoxin and 99.8 3.1E-19 6.8E-24 107.2 9.7 79 44-123 2-80 (80)
14 cd03031 GRX_GRX_like Glutaredo 99.8 1.5E-19 3.2E-24 119.8 8.7 81 44-127 1-91 (147)
15 cd03027 GRX_DEP Glutaredoxin ( 99.8 3.6E-19 7.9E-24 105.1 8.7 71 44-117 2-72 (73)
16 TIGR02190 GlrX-dom Glutaredoxi 99.8 3.9E-19 8.5E-24 106.6 9.0 74 40-117 5-78 (79)
17 COG0278 Glutaredoxin-related p 99.8 3.2E-19 6.8E-24 108.9 8.3 94 31-127 3-102 (105)
18 cd03029 GRX_hybridPRX5 Glutare 99.8 2.1E-18 4.6E-23 101.5 9.0 70 44-117 2-71 (72)
19 PRK11200 grxA glutaredoxin 1; 99.7 1.9E-17 4.1E-22 100.5 9.4 73 44-119 2-81 (85)
20 TIGR02183 GRXA Glutaredoxin, G 99.7 2.2E-17 4.7E-22 100.5 9.0 74 45-121 2-82 (86)
21 cd02066 GRX_family Glutaredoxi 99.7 2.8E-17 6.1E-22 95.5 9.1 71 44-117 1-71 (72)
22 PRK12759 bifunctional gluaredo 99.7 6.6E-17 1.4E-21 123.0 9.2 83 43-127 2-89 (410)
23 PF00462 Glutaredoxin: Glutare 99.7 1.7E-16 3.7E-21 90.2 7.1 60 45-107 1-60 (60)
24 KOG0911|consensus 99.6 2.4E-15 5.3E-20 104.3 8.9 90 35-127 131-225 (227)
25 cd03030 GRX_SH3BGR Glutaredoxi 99.6 1.5E-14 3.2E-19 88.9 8.9 80 45-127 2-91 (92)
26 TIGR02196 GlrX_YruB Glutaredox 99.6 1.5E-14 3.2E-19 84.4 8.0 65 44-111 1-65 (74)
27 PRK10329 glutaredoxin-like pro 99.6 2.1E-14 4.5E-19 86.4 8.3 64 44-111 2-65 (81)
28 TIGR02194 GlrX_NrdH Glutaredox 99.6 1.4E-14 3E-19 85.2 7.3 63 45-111 1-64 (72)
29 cd02973 TRX_GRX_like Thioredox 99.5 3E-14 6.4E-19 82.4 6.1 58 44-108 2-64 (67)
30 cd02976 NrdH NrdH-redoxin (Nrd 99.5 4.6E-13 1E-17 77.8 8.5 66 44-112 1-66 (73)
31 PHA02278 thioredoxin-like prot 99.5 7.6E-13 1.6E-17 83.0 9.4 68 40-110 12-88 (103)
32 cd02954 DIM1 Dim1 family; Dim1 99.4 9.8E-13 2.1E-17 83.7 8.1 64 42-110 14-84 (114)
33 TIGR02200 GlrX_actino Glutared 99.4 1.5E-12 3.3E-17 76.7 8.4 65 44-111 1-67 (77)
34 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 2E-12 4.4E-17 79.1 6.7 69 33-108 4-77 (89)
35 TIGR00411 redox_disulf_1 small 99.3 1.8E-11 4E-16 72.9 8.4 62 44-110 2-68 (82)
36 PHA02125 thioredoxin-like prot 99.3 5.8E-12 1.3E-16 74.6 6.1 55 45-107 2-56 (75)
37 KOG0907|consensus 99.3 1.4E-11 3E-16 77.6 6.8 63 43-110 22-90 (106)
38 KOG0910|consensus 99.3 1.1E-11 2.4E-16 81.7 6.4 71 32-107 50-128 (150)
39 cd02985 TRX_CDSP32 TRX family, 99.3 6.7E-11 1.4E-15 74.0 9.7 67 42-110 15-87 (103)
40 TIGR01295 PedC_BrcD bacterioci 99.3 5.6E-11 1.2E-15 76.7 9.5 76 35-110 15-106 (122)
41 cd02989 Phd_like_TxnDC9 Phosdu 99.3 1.7E-11 3.7E-16 78.1 7.0 71 41-116 21-97 (113)
42 cd02975 PfPDO_like_N Pyrococcu 99.3 1.1E-11 2.4E-16 78.9 5.4 61 37-102 17-81 (113)
43 cd02986 DLP Dim1 family, Dim1- 99.2 4.9E-11 1.1E-15 75.6 6.7 62 41-107 13-81 (114)
44 KOG2824|consensus 99.2 3.3E-11 7.1E-16 86.0 5.9 82 43-127 131-222 (281)
45 cd02948 TRX_NDPK TRX domain, T 99.2 3.7E-10 8E-15 70.4 9.3 69 35-109 9-86 (102)
46 cd02957 Phd_like Phosducin (Ph 99.2 9.6E-11 2.1E-15 74.4 6.3 68 43-116 25-98 (113)
47 TIGR00412 redox_disulf_2 small 99.1 2.4E-10 5.1E-15 67.8 6.6 52 48-107 5-60 (76)
48 TIGR02187 GlrX_arch Glutaredox 99.1 3.4E-10 7.4E-15 79.5 8.4 72 27-103 119-193 (215)
49 cd02965 HyaE HyaE family; HyaE 99.1 2.5E-10 5.4E-15 72.3 6.5 66 41-111 26-100 (111)
50 cd02999 PDI_a_ERp44_like PDIa 99.1 3.7E-10 7.9E-15 70.4 7.0 61 40-104 16-82 (100)
51 cd02963 TRX_DnaJ TRX domain, D 99.1 9.2E-10 2E-14 69.7 8.9 64 41-109 23-94 (111)
52 cd02949 TRX_NTR TRX domain, no 99.1 2.1E-10 4.6E-15 70.8 5.8 60 47-111 19-84 (97)
53 cd03006 PDI_a_EFP1_N PDIa fami 99.1 3E-10 6.6E-15 72.3 6.5 63 40-107 26-97 (113)
54 cd02953 DsbDgamma DsbD gamma f 99.1 1.1E-10 2.4E-15 72.9 4.3 63 37-100 5-76 (104)
55 cd03041 GST_N_2GST_N GST_N fam 99.1 1.3E-09 2.8E-14 64.6 8.8 72 45-119 2-75 (77)
56 PTZ00051 thioredoxin; Provisio 99.1 7.4E-10 1.6E-14 68.1 7.4 72 34-110 9-87 (98)
57 COG3118 Thioredoxin domain-con 99.1 4.2E-10 9E-15 81.5 6.8 67 40-111 41-114 (304)
58 cd02956 ybbN ybbN protein fami 99.1 1.5E-09 3.2E-14 66.6 8.3 61 43-108 13-80 (96)
59 cd02984 TRX_PICOT TRX domain, 99.1 9.7E-10 2.1E-14 67.4 7.4 63 43-110 15-84 (97)
60 PLN00410 U5 snRNP protein, DIM 99.1 6.4E-10 1.4E-14 73.4 6.9 63 42-109 23-94 (142)
61 cd00570 GST_N_family Glutathio 99.1 2.1E-09 4.6E-14 61.2 8.2 69 46-117 2-70 (71)
62 cd02962 TMX2 TMX2 family; comp 99.1 1.6E-09 3.5E-14 72.4 8.6 63 44-111 49-125 (152)
63 cd03003 PDI_a_ERdj5_N PDIa fam 99.0 9.4E-10 2E-14 68.2 6.6 60 43-107 19-85 (101)
64 cd02987 Phd_like_Phd Phosducin 99.0 7.3E-10 1.6E-14 75.7 6.5 66 44-115 85-156 (175)
65 cd02994 PDI_a_TMX PDIa family, 99.0 1.8E-09 4E-14 66.8 7.7 65 36-105 11-82 (101)
66 PF00085 Thioredoxin: Thioredo 99.0 5.8E-09 1.3E-13 64.2 9.8 64 42-110 17-87 (103)
67 cd03040 GST_N_mPGES2 GST_N fam 99.0 4.4E-09 9.5E-14 62.1 8.8 70 44-119 1-74 (77)
68 cd02996 PDI_a_ERp44 PDIa famil 99.0 1.6E-09 3.4E-14 68.1 7.2 63 38-105 13-89 (108)
69 cd03037 GST_N_GRX2 GST_N famil 99.0 3.7E-09 8.1E-14 61.5 8.4 68 46-118 2-70 (71)
70 PRK15317 alkyl hydroperoxide r 99.0 1.1E-09 2.3E-14 85.9 7.4 93 14-108 86-181 (517)
71 PRK09381 trxA thioredoxin; Pro 99.0 3.6E-09 7.7E-14 66.4 8.3 64 42-110 21-91 (109)
72 PRK10996 thioredoxin 2; Provis 99.0 6.9E-09 1.5E-13 68.3 9.9 72 34-110 43-122 (139)
73 cd03060 GST_N_Omega_like GST_N 99.0 6.2E-09 1.4E-13 60.6 8.5 67 46-116 2-69 (71)
74 cd03004 PDI_a_ERdj5_C PDIa fam 99.0 2.2E-09 4.9E-14 66.8 7.0 56 44-104 21-83 (104)
75 cd03005 PDI_a_ERp46 PDIa famil 99.0 2.3E-09 5E-14 66.2 6.9 68 36-108 10-87 (102)
76 TIGR03140 AhpF alkyl hydropero 99.0 1.5E-09 3.3E-14 85.0 7.3 93 14-108 87-182 (515)
77 PF04908 SH3BGR: SH3-binding, 99.0 3.7E-09 8E-14 65.6 7.5 81 44-127 2-97 (99)
78 cd02950 TxlA TRX-like protein 99.0 5E-09 1.1E-13 69.2 8.3 65 41-108 19-91 (142)
79 cd02959 ERp19 Endoplasmic reti 99.0 1.2E-09 2.6E-14 69.9 5.0 71 33-109 9-92 (117)
80 TIGR02187 GlrX_arch Glutaredox 99.0 3.4E-09 7.3E-14 74.5 7.5 68 36-108 14-91 (215)
81 cd03059 GST_N_SspA GST_N famil 99.0 1.1E-08 2.5E-13 59.5 8.5 70 46-119 2-71 (73)
82 cd03000 PDI_a_TMX3 PDIa family 99.0 1.6E-09 3.4E-14 67.7 5.1 60 36-100 9-76 (104)
83 cd02952 TRP14_like Human TRX-r 98.9 4.3E-09 9.3E-14 67.6 7.1 69 42-110 21-106 (119)
84 cd02951 SoxW SoxW family; SoxW 98.9 4.7E-09 1E-13 67.5 7.4 69 35-103 5-92 (125)
85 TIGR03143 AhpF_homolog putativ 98.9 2.1E-09 4.6E-14 84.9 6.9 85 14-105 446-538 (555)
86 KOG0908|consensus 98.9 3.3E-09 7.1E-14 75.2 6.0 71 33-110 10-90 (288)
87 cd03045 GST_N_Delta_Epsilon GS 98.9 1.6E-08 3.5E-13 59.1 7.9 72 46-118 2-73 (74)
88 cd03065 PDI_b_Calsequestrin_N 98.9 7.3E-09 1.6E-13 66.6 6.6 66 38-108 22-101 (120)
89 cd02988 Phd_like_VIAF Phosduci 98.9 4.9E-09 1.1E-13 72.6 5.8 78 30-115 87-173 (192)
90 cd03051 GST_N_GTT2_like GST_N 98.9 1.4E-08 3.1E-13 59.0 6.9 71 46-117 2-73 (74)
91 cd03055 GST_N_Omega GST_N fami 98.9 4.2E-08 9E-13 59.7 8.9 73 41-117 15-88 (89)
92 cd02997 PDI_a_PDIR PDIa family 98.8 2E-08 4.4E-13 62.1 7.1 62 44-108 19-89 (104)
93 PF13417 GST_N_3: Glutathione 98.8 3.7E-08 8.1E-13 58.0 7.5 69 47-119 1-69 (75)
94 PTZ00062 glutaredoxin; Provisi 98.8 1.8E-08 3.9E-13 70.3 6.9 65 34-111 7-79 (204)
95 cd03008 TryX_like_RdCVF Trypar 98.8 5.1E-08 1.1E-12 64.7 8.8 69 39-107 22-126 (146)
96 cd02947 TRX_family TRX family; 98.8 2.8E-08 6.2E-13 59.3 7.0 59 45-110 14-79 (93)
97 PF13098 Thioredoxin_2: Thiore 98.8 2.5E-08 5.5E-13 62.7 6.9 73 44-116 8-108 (112)
98 TIGR01068 thioredoxin thioredo 98.8 1.4E-07 3E-12 57.7 10.0 61 44-109 16-83 (101)
99 cd03002 PDI_a_MPD1_like PDI fa 98.8 3.4E-08 7.4E-13 61.7 6.8 58 45-105 21-85 (109)
100 PTZ00443 Thioredoxin domain-co 98.8 5.9E-08 1.3E-12 68.7 8.6 61 43-108 53-120 (224)
101 cd03056 GST_N_4 GST_N family, 98.7 1.2E-07 2.6E-12 55.0 8.0 71 46-117 2-72 (73)
102 cd02993 PDI_a_APS_reductase PD 98.7 7.2E-08 1.6E-12 60.7 7.5 56 41-100 20-82 (109)
103 cd03036 ArsC_like Arsenate Red 98.7 4.1E-08 8.8E-13 62.3 6.2 49 45-93 1-49 (111)
104 PF13192 Thioredoxin_3: Thiore 98.7 1.2E-07 2.7E-12 56.1 7.7 53 45-106 3-59 (76)
105 cd03009 TryX_like_TryX_NRX Try 98.7 1.6E-07 3.5E-12 60.7 8.5 67 41-107 17-113 (131)
106 cd02977 ArsC_family Arsenate R 98.7 7.5E-08 1.6E-12 60.4 6.3 49 45-93 1-49 (105)
107 cd03001 PDI_a_P5 PDIa family, 98.7 1.3E-07 2.8E-12 58.4 7.2 55 45-104 22-82 (103)
108 cd02992 PDI_a_QSOX PDIa family 98.7 3.7E-08 8E-13 62.7 4.7 59 44-105 21-89 (114)
109 cd02955 SSP411 TRX domain, SSP 98.7 4.3E-07 9.2E-12 58.8 9.6 69 41-109 14-96 (124)
110 TIGR01126 pdi_dom protein disu 98.7 5.2E-08 1.1E-12 59.9 5.0 60 41-105 12-80 (102)
111 cd02961 PDI_a_family Protein D 98.6 3.9E-07 8.5E-12 55.3 8.5 60 36-100 8-75 (101)
112 PRK01655 spxA transcriptional 98.6 1.5E-07 3.3E-12 61.4 6.6 37 45-81 2-38 (131)
113 cd03052 GST_N_GDAP1 GST_N fami 98.6 3.9E-07 8.6E-12 53.4 7.4 71 46-117 2-72 (73)
114 cd02964 TryX_like_family Trypa 98.6 6.3E-07 1.4E-11 58.2 8.5 67 41-107 16-113 (132)
115 cd03035 ArsC_Yffb Arsenate Red 98.6 2.7E-07 5.9E-12 58.0 6.1 49 45-93 1-49 (105)
116 TIGR00424 APS_reduc 5'-adenyly 98.6 3.4E-07 7.5E-12 70.9 7.8 60 41-105 370-439 (463)
117 PRK15412 thiol:disulfide inter 98.5 5.3E-07 1.1E-11 61.9 7.9 63 41-103 67-150 (185)
118 cd03007 PDI_a_ERp29_N PDIa fam 98.5 7E-07 1.5E-11 57.1 7.8 70 36-105 11-91 (116)
119 cd03053 GST_N_Phi GST_N family 98.5 1.5E-06 3.2E-11 50.9 8.6 74 45-119 2-75 (76)
120 cd02995 PDI_a_PDI_a'_C PDIa fa 98.5 2.8E-07 6E-12 56.8 5.6 57 43-105 19-84 (104)
121 TIGR01617 arsC_related transcr 98.5 2.9E-07 6.3E-12 58.9 5.7 49 45-93 1-49 (117)
122 cd03058 GST_N_Tau GST_N family 98.5 1.7E-06 3.6E-11 50.6 8.5 70 46-119 2-72 (74)
123 KOG0190|consensus 98.5 3E-07 6.6E-12 71.3 6.5 70 32-106 31-111 (493)
124 cd02998 PDI_a_ERp38 PDIa famil 98.5 4.4E-07 9.5E-12 56.0 6.2 52 45-100 22-79 (105)
125 PF05768 DUF836: Glutaredoxin- 98.5 2.9E-06 6.4E-11 50.7 9.5 53 44-104 1-57 (81)
126 cd03061 GST_N_CLIC GST_N famil 98.5 1.1E-06 2.4E-11 53.9 7.6 65 51-119 20-84 (91)
127 PRK12559 transcriptional regul 98.5 6.1E-07 1.3E-11 58.6 6.8 38 45-82 2-39 (131)
128 PRK13344 spxA transcriptional 98.5 6.5E-07 1.4E-11 58.5 6.9 47 45-91 2-48 (132)
129 TIGR02740 TraF-like TraF-like 98.5 5.5E-07 1.2E-11 65.5 7.2 59 44-102 169-235 (271)
130 cd03032 ArsC_Spx Arsenate Redu 98.5 6.3E-07 1.4E-11 57.1 6.7 47 45-91 2-48 (115)
131 PTZ00102 disulphide isomerase; 98.5 5.8E-07 1.3E-11 69.5 7.5 68 35-107 41-119 (477)
132 KOG4277|consensus 98.4 1.6E-07 3.5E-12 68.6 3.4 63 41-105 41-111 (468)
133 TIGR02738 TrbB type-F conjugat 98.4 4.9E-07 1.1E-11 60.5 5.3 62 41-102 50-124 (153)
134 PLN02309 5'-adenylylsulfate re 98.4 1.9E-06 4.2E-11 66.7 8.6 61 41-105 364-433 (457)
135 cd03054 GST_N_Metaxin GST_N fa 98.4 2.2E-06 4.7E-11 49.8 6.9 58 51-119 14-71 (72)
136 KOG2501|consensus 98.4 1.1E-06 2.5E-11 58.5 6.3 73 35-107 26-129 (157)
137 TIGR01130 ER_PDI_fam protein d 98.4 1.4E-06 3.1E-11 66.8 7.8 66 36-106 11-87 (462)
138 cd03010 TlpA_like_DsbE TlpA-li 98.4 2.2E-06 4.9E-11 55.0 7.5 67 41-107 24-114 (127)
139 cd03033 ArsC_15kD Arsenate Red 98.4 2.1E-06 4.5E-11 54.7 6.7 44 44-87 1-45 (113)
140 COG4545 Glutaredoxin-related p 98.4 2.2E-06 4.8E-11 50.0 5.9 64 45-109 4-78 (85)
141 cd03076 GST_N_Pi GST_N family, 98.4 8.2E-06 1.8E-10 47.6 8.6 71 45-119 2-72 (73)
142 PF13905 Thioredoxin_8: Thiore 98.3 4.1E-06 8.8E-11 51.0 7.5 34 47-80 7-46 (95)
143 cd03049 GST_N_3 GST_N family, 98.3 5.1E-06 1.1E-10 48.3 7.4 68 46-117 2-72 (73)
144 TIGR00385 dsbE periplasmic pro 98.3 3.5E-06 7.5E-11 57.2 7.6 68 41-108 62-152 (173)
145 cd01659 TRX_superfamily Thiore 98.3 1.4E-06 3E-11 47.7 4.8 56 45-104 1-61 (69)
146 PF14595 Thioredoxin_9: Thiore 98.3 3.3E-07 7.2E-12 59.7 2.4 77 29-109 29-113 (129)
147 cd03042 GST_N_Zeta GST_N famil 98.3 5.5E-06 1.2E-10 47.9 7.2 71 46-117 2-72 (73)
148 cd03011 TlpA_like_ScsD_MtbDsbE 98.3 1.6E-06 3.4E-11 55.3 5.0 61 42-102 20-99 (123)
149 KOG3029|consensus 98.3 6.9E-06 1.5E-10 59.5 8.3 69 43-117 89-157 (370)
150 cd03050 GST_N_Theta GST_N fami 98.3 1.2E-05 2.6E-10 47.1 8.1 73 46-119 2-74 (76)
151 PRK00293 dipZ thiol:disulfide 98.3 6.5E-06 1.4E-10 65.6 8.7 64 42-106 474-547 (571)
152 cd02967 mauD Methylamine utili 98.3 2.8E-06 6.1E-11 53.3 5.4 58 42-101 21-83 (114)
153 PF13409 GST_N_2: Glutathione 98.2 5E-06 1.1E-10 48.3 5.9 68 52-119 1-69 (70)
154 PRK09481 sspA stringent starva 98.2 1.1E-05 2.4E-10 56.2 8.6 73 44-120 10-82 (211)
155 PRK13728 conjugal transfer pro 98.2 3.1E-06 6.8E-11 58.0 5.5 59 44-102 72-142 (181)
156 PTZ00102 disulphide isomerase; 98.2 2.6E-06 5.6E-11 65.9 5.6 59 42-105 375-442 (477)
157 cd03039 GST_N_Sigma_like GST_N 98.2 1.5E-05 3.4E-10 46.1 7.4 70 46-118 2-71 (72)
158 PRK14018 trifunctional thiored 98.2 3.8E-06 8.2E-11 66.0 5.9 66 42-107 56-153 (521)
159 PF13728 TraF: F plasmid trans 98.2 9.6E-06 2.1E-10 57.2 7.1 69 34-102 113-189 (215)
160 cd03044 GST_N_EF1Bgamma GST_N 98.2 1.7E-05 3.7E-10 46.4 7.1 71 46-118 2-73 (75)
161 cd03048 GST_N_Ure2p_like GST_N 98.1 3.3E-05 7.1E-10 45.8 8.2 73 45-119 2-77 (81)
162 cd03080 GST_N_Metaxin_like GST 98.1 3.2E-05 7E-10 45.3 8.0 64 45-119 2-72 (75)
163 COG1393 ArsC Arsenate reductas 98.1 1.4E-05 3E-10 51.2 6.8 50 44-93 2-51 (117)
164 PF13899 Thioredoxin_7: Thiore 98.1 1.2E-05 2.7E-10 47.9 5.8 56 41-102 16-79 (82)
165 TIGR02182 GRXB Glutaredoxin, G 98.1 2E-05 4.3E-10 55.0 7.6 68 47-119 2-70 (209)
166 TIGR02661 MauD methylamine deh 98.1 1.8E-05 3.8E-10 54.6 7.2 65 41-106 73-159 (189)
167 cd03038 GST_N_etherase_LigE GS 98.1 1.4E-05 2.9E-10 47.9 5.8 67 51-119 14-81 (84)
168 PRK10387 glutaredoxin 2; Provi 98.1 2.6E-05 5.7E-10 54.0 7.9 70 46-120 2-72 (210)
169 cd03047 GST_N_2 GST_N family, 98.1 5.1E-05 1.1E-09 44.1 7.8 71 46-117 2-72 (73)
170 TIGR00014 arsC arsenate reduct 98.0 2.2E-05 4.8E-10 50.0 6.4 49 45-93 1-49 (114)
171 cd03034 ArsC_ArsC Arsenate Red 98.0 2.2E-05 4.7E-10 49.8 6.2 49 45-93 1-49 (112)
172 PRK10026 arsenate reductase; P 98.0 3E-05 6.5E-10 51.2 6.9 50 43-93 2-52 (141)
173 KOG3425|consensus 98.0 1.7E-05 3.6E-10 50.6 5.2 70 33-102 16-101 (128)
174 PLN02919 haloacid dehalogenase 98.0 2.8E-05 6.1E-10 65.9 8.2 71 39-109 417-518 (1057)
175 PRK10877 protein disulfide iso 98.0 4.8E-05 1E-09 54.2 8.3 69 44-112 110-219 (232)
176 PRK03147 thiol-disulfide oxido 98.0 4.6E-05 9.9E-10 51.2 7.6 67 41-107 60-152 (173)
177 PRK10853 putative reductase; P 98.0 3.3E-05 7E-10 49.6 6.3 44 45-88 2-46 (118)
178 cd02960 AGR Anterior Gradient 98.0 2.8E-05 6E-10 50.7 5.9 64 34-103 14-87 (130)
179 TIGR01616 nitro_assoc nitrogen 98.0 4.7E-05 1E-09 49.4 6.8 46 44-89 2-48 (126)
180 PRK15113 glutathione S-transfe 97.9 0.0001 2.3E-09 51.4 8.8 76 43-119 4-81 (214)
181 cd02982 PDI_b'_family Protein 97.9 2.8E-05 6E-10 47.9 5.2 51 45-100 16-72 (103)
182 cd03057 GST_N_Beta GST_N famil 97.9 0.00011 2.3E-09 43.0 7.4 72 46-119 2-74 (77)
183 COG3634 AhpF Alkyl hydroperoxi 97.9 5E-05 1.1E-09 57.1 6.9 87 20-109 95-182 (520)
184 KOG0190|consensus 97.9 1E-05 2.3E-10 62.9 3.4 28 43-70 385-413 (493)
185 KOG0912|consensus 97.9 1E-05 2.2E-10 59.2 3.0 68 38-108 8-86 (375)
186 cd03012 TlpA_like_DipZ_like Tl 97.9 0.00011 2.4E-09 47.1 7.6 26 41-66 22-48 (126)
187 cd02966 TlpA_like_family TlpA- 97.9 8E-05 1.7E-09 45.7 6.6 58 45-102 23-103 (116)
188 TIGR01626 ytfJ_HI0045 conserve 97.8 6.3E-05 1.4E-09 51.8 5.6 20 48-67 66-85 (184)
189 cd03046 GST_N_GTT1_like GST_N 97.8 0.00024 5.2E-09 41.3 7.3 72 46-119 2-73 (76)
190 cd03020 DsbA_DsbC_DsbG DsbA fa 97.8 0.00019 4.1E-09 49.6 7.6 74 43-116 79-193 (197)
191 TIGR00862 O-ClC intracellular 97.7 0.00022 4.8E-09 51.0 8.0 65 51-119 17-81 (236)
192 TIGR01130 ER_PDI_fam protein d 97.7 5.4E-05 1.2E-09 58.1 5.2 57 42-105 364-430 (462)
193 KOG0406|consensus 97.7 0.00031 6.6E-09 49.9 8.5 75 42-120 7-82 (231)
194 cd02958 UAS UAS family; UAS is 97.7 0.00017 3.7E-09 45.5 6.5 67 34-103 8-84 (114)
195 cd03043 GST_N_1 GST_N family, 97.7 0.00047 1E-08 40.1 7.7 66 50-117 7-72 (73)
196 PLN02378 glutathione S-transfe 97.7 0.00024 5.2E-09 49.7 7.6 65 51-119 18-82 (213)
197 COG2143 Thioredoxin-related pr 97.7 0.00028 6E-09 47.2 7.4 76 32-108 31-130 (182)
198 PF08534 Redoxin: Redoxin; In 97.7 0.00025 5.4E-09 46.4 7.2 27 40-66 26-54 (146)
199 TIGR02739 TraF type-F conjugat 97.7 0.0002 4.4E-09 51.7 7.2 70 33-102 142-219 (256)
200 PLN02473 glutathione S-transfe 97.7 0.00037 8.1E-09 48.4 8.1 74 45-119 3-76 (214)
201 TIGR01262 maiA maleylacetoacet 97.7 0.00018 3.9E-09 49.8 6.3 74 47-120 2-75 (210)
202 PLN02817 glutathione dehydroge 97.6 0.00036 7.7E-09 50.7 7.8 66 51-120 71-136 (265)
203 PTZ00056 glutathione peroxidas 97.6 0.00032 6.9E-09 48.8 7.1 36 41-76 38-79 (199)
204 PF06110 DUF953: Eukaryotic pr 97.6 5.4E-05 1.2E-09 48.6 3.0 52 51-102 36-95 (119)
205 PRK13703 conjugal pilus assemb 97.6 0.00034 7.5E-09 50.3 7.3 69 34-102 136-212 (248)
206 PF03960 ArsC: ArsC family; I 97.5 0.00024 5.3E-09 44.8 5.2 46 48-93 1-46 (110)
207 PLN02412 probable glutathione 97.5 0.00049 1.1E-08 46.5 6.9 60 41-101 28-100 (167)
208 cd03023 DsbA_Com1_like DsbA fa 97.5 0.00088 1.9E-08 43.7 7.8 27 91-117 124-150 (154)
209 KOG0191|consensus 97.5 0.00015 3.2E-09 55.1 4.5 55 45-104 51-111 (383)
210 TIGR02540 gpx7 putative glutat 97.4 0.00067 1.4E-08 45.0 6.6 26 41-66 21-47 (153)
211 cd00340 GSH_Peroxidase Glutath 97.4 0.00086 1.9E-08 44.4 7.1 35 41-76 21-61 (152)
212 COG0526 TrxA Thiol-disulfide i 97.4 0.00025 5.4E-09 43.1 4.2 60 42-105 32-100 (127)
213 cd03077 GST_N_Alpha GST_N fami 97.4 0.0021 4.5E-08 38.0 7.6 71 45-119 2-74 (79)
214 COG0625 Gst Glutathione S-tran 97.4 0.0009 2E-08 46.5 6.9 74 46-121 2-76 (211)
215 PLN02399 phospholipid hydroper 97.4 0.00095 2.1E-08 47.7 7.0 26 41-66 98-124 (236)
216 PTZ00256 glutathione peroxidas 97.4 0.00071 1.5E-08 46.3 6.2 59 41-100 39-111 (183)
217 KOG1731|consensus 97.4 4.9E-05 1.1E-09 59.8 0.4 67 34-100 47-120 (606)
218 PRK11509 hydrogenase-1 operon 97.3 0.0027 5.9E-08 41.5 7.8 93 11-111 4-108 (132)
219 smart00594 UAS UAS domain. 97.2 0.0037 7.9E-08 40.0 7.5 68 33-103 17-94 (122)
220 PRK10357 putative glutathione 97.2 0.0025 5.5E-08 43.8 7.1 70 46-119 2-72 (202)
221 PLN02395 glutathione S-transfe 97.2 0.0037 8E-08 43.4 7.9 73 45-119 3-75 (215)
222 PF02798 GST_N: Glutathione S- 97.1 0.0066 1.4E-07 35.5 7.9 71 45-118 3-75 (76)
223 PF03190 Thioredox_DsbH: Prote 97.1 0.0026 5.6E-08 43.0 6.7 65 39-108 34-117 (163)
224 cd02972 DsbA_family DsbA famil 97.1 0.0037 7.9E-08 37.2 6.9 61 45-105 1-92 (98)
225 PRK13972 GSH-dependent disulfi 97.1 0.0044 9.5E-08 43.2 8.1 73 45-119 2-81 (215)
226 KOG0868|consensus 97.1 0.0019 4E-08 44.3 5.7 72 48-121 11-82 (217)
227 COG4232 Thiol:disulfide interc 97.1 0.00065 1.4E-08 53.8 4.0 59 44-103 476-542 (569)
228 cd02969 PRX_like1 Peroxiredoxi 97.1 0.0045 9.8E-08 41.6 7.7 38 41-78 24-67 (171)
229 cd02970 PRX_like2 Peroxiredoxi 97.1 0.0044 9.6E-08 40.3 7.3 52 48-102 31-87 (149)
230 PRK11657 dsbG disulfide isomer 97.0 0.0059 1.3E-07 44.0 8.0 22 44-65 120-141 (251)
231 PRK00522 tpx lipid hydroperoxi 97.0 0.0024 5.2E-08 43.1 5.5 56 41-98 43-103 (167)
232 cd03014 PRX_Atyp2cys Peroxired 96.9 0.0035 7.6E-08 40.8 5.5 38 41-78 25-67 (143)
233 KOG4023|consensus 96.9 0.001 2.3E-08 40.9 2.7 84 44-127 3-97 (108)
234 cd03075 GST_N_Mu GST_N family, 96.9 0.021 4.6E-07 33.9 8.4 73 47-119 3-80 (82)
235 PRK11752 putative S-transferas 96.8 0.0093 2E-07 43.2 8.0 78 40-119 40-127 (264)
236 COG2999 GrxB Glutaredoxin 2 [P 96.7 0.003 6.4E-08 43.2 4.4 69 47-120 3-72 (215)
237 KOG1422|consensus 96.7 0.011 2.4E-07 41.3 7.3 65 51-119 19-83 (221)
238 cd02968 SCO SCO (an acronym fo 96.6 0.011 2.5E-07 38.1 6.2 26 41-66 21-48 (142)
239 PRK10542 glutathionine S-trans 96.5 0.013 2.7E-07 40.2 6.6 73 46-119 2-75 (201)
240 KOG0191|consensus 96.5 0.0017 3.7E-08 49.4 2.3 58 44-106 165-230 (383)
241 cd03018 PRX_AhpE_like Peroxire 96.5 0.017 3.7E-07 37.6 6.9 36 43-78 29-71 (149)
242 PF00578 AhpC-TSA: AhpC/TSA fa 96.4 0.028 6E-07 35.3 7.3 59 41-102 24-89 (124)
243 KOG0867|consensus 96.4 0.019 4.2E-07 40.7 7.1 75 44-119 2-76 (226)
244 KOG0913|consensus 96.4 0.0015 3.3E-08 46.3 1.3 65 34-105 32-105 (248)
245 cd03017 PRX_BCP Peroxiredoxin 96.4 0.025 5.4E-07 36.4 6.9 37 42-78 23-66 (140)
246 KOG0914|consensus 96.2 0.0037 8.1E-08 44.1 2.4 59 48-113 151-224 (265)
247 PTZ00057 glutathione s-transfe 96.2 0.051 1.1E-06 37.6 8.1 74 44-119 4-81 (205)
248 cd03078 GST_N_Metaxin1_like GS 96.2 0.05 1.1E-06 31.7 6.8 58 51-119 14-71 (73)
249 cd02971 PRX_family Peroxiredox 96.1 0.031 6.7E-07 35.9 6.3 38 41-78 21-65 (140)
250 COG5494 Predicted thioredoxin/ 96.1 0.055 1.2E-06 38.1 7.7 62 41-109 9-72 (265)
251 cd03079 GST_N_Metaxin2 GST_N f 96.0 0.087 1.9E-06 30.9 7.2 58 51-118 15-72 (74)
252 KOG1672|consensus 95.9 0.021 4.6E-07 39.6 4.9 77 32-113 74-159 (211)
253 PRK10606 btuE putative glutath 95.8 0.054 1.2E-06 37.3 6.6 73 41-118 24-112 (183)
254 cd03015 PRX_Typ2cys Peroxiredo 95.7 0.059 1.3E-06 36.4 6.5 39 41-79 28-73 (173)
255 PF02114 Phosducin: Phosducin; 95.7 0.029 6.3E-07 40.8 5.2 63 45-115 149-219 (265)
256 COG3019 Predicted metal-bindin 95.6 0.062 1.4E-06 35.3 5.8 74 41-121 24-104 (149)
257 KOG1695|consensus 95.6 0.12 2.5E-06 36.4 7.6 72 44-119 3-74 (206)
258 TIGR03137 AhpC peroxiredoxin. 95.5 0.056 1.2E-06 37.1 6.0 25 41-65 30-56 (187)
259 PRK13190 putative peroxiredoxi 95.5 0.029 6.4E-07 39.0 4.6 25 41-65 26-52 (202)
260 PRK09437 bcp thioredoxin-depen 95.5 0.096 2.1E-06 34.4 6.8 38 41-78 29-73 (154)
261 PHA03075 glutaredoxin-like pro 95.4 0.029 6.2E-07 35.7 3.7 34 43-76 3-36 (123)
262 PF07315 DUF1462: Protein of u 95.0 0.15 3.3E-06 31.0 5.9 64 46-110 1-81 (93)
263 KOG4244|consensus 94.6 0.083 1.8E-06 38.4 4.8 69 39-118 40-115 (281)
264 PRK13599 putative peroxiredoxi 94.4 0.094 2E-06 37.0 4.8 26 41-66 27-54 (215)
265 PF06764 DUF1223: Protein of u 94.2 0.08 1.7E-06 37.1 3.9 67 45-111 2-86 (202)
266 KOG3414|consensus 94.0 0.23 4.9E-06 32.3 5.3 58 45-107 26-90 (142)
267 cd03016 PRX_1cys Peroxiredoxin 93.9 0.16 3.5E-06 35.3 5.0 24 43-66 26-51 (203)
268 PRK13189 peroxiredoxin; Provis 93.8 0.16 3.6E-06 35.9 4.9 26 41-66 34-61 (222)
269 PF13462 Thioredoxin_4: Thiore 93.6 0.14 3E-06 33.6 4.1 27 90-116 130-156 (162)
270 PRK10382 alkyl hydroperoxide r 93.6 0.41 8.9E-06 33.0 6.5 26 41-66 30-57 (187)
271 PF11009 DUF2847: Protein of u 93.4 1.2 2.6E-05 27.9 8.3 72 34-108 11-92 (105)
272 PRK13191 putative peroxiredoxi 93.3 0.22 4.8E-06 35.1 5.0 39 41-79 32-77 (215)
273 cd03019 DsbA_DsbA DsbA family, 92.9 0.11 2.4E-06 34.7 2.9 24 42-65 16-39 (178)
274 COG4837 Uncharacterized protei 92.8 1.1 2.5E-05 27.4 6.7 68 42-110 4-88 (106)
275 PF13462 Thioredoxin_4: Thiore 92.4 0.2 4.4E-06 32.8 3.6 21 44-64 15-35 (162)
276 TIGR03143 AhpF_homolog putativ 92.1 0.49 1.1E-05 37.9 5.9 52 44-102 369-425 (555)
277 PF04134 DUF393: Protein of un 91.9 0.49 1.1E-05 29.5 4.7 68 47-119 1-76 (114)
278 PF06953 ArsD: Arsenical resis 91.8 0.86 1.9E-05 29.4 5.8 58 58-116 31-94 (123)
279 cd02991 UAS_ETEA UAS family, E 91.7 2.3 5E-05 27.0 8.4 63 34-102 8-83 (116)
280 COG5429 Uncharacterized secret 91.6 0.61 1.3E-05 33.4 5.2 61 45-105 45-122 (261)
281 KOG4420|consensus 91.5 0.16 3.5E-06 37.0 2.4 74 45-119 27-100 (325)
282 PF10568 Tom37: Outer mitochon 91.2 1.7 3.7E-05 25.2 6.2 54 53-117 14-71 (72)
283 PRK15000 peroxidase; Provision 91.1 0.76 1.7E-05 31.9 5.4 39 41-79 33-78 (200)
284 PTZ00137 2-Cys peroxiredoxin; 91.0 0.53 1.2E-05 34.3 4.6 29 38-66 94-124 (261)
285 KOG0911|consensus 91.0 0.069 1.5E-06 37.8 0.1 60 42-106 17-82 (227)
286 cd03022 DsbA_HCCA_Iso DsbA fam 90.7 0.59 1.3E-05 31.6 4.5 30 88-117 159-188 (192)
287 cd03013 PRX5_like Peroxiredoxi 89.8 0.65 1.4E-05 30.9 4.0 58 41-100 28-95 (155)
288 PRK10954 periplasmic protein d 87.8 0.41 8.8E-06 33.3 2.0 24 89-112 160-183 (207)
289 PF01323 DSBA: DSBA-like thior 86.6 1.4 3.1E-05 29.6 4.2 30 88-117 159-189 (193)
290 PF02966 DIM1: Mitosis protein 84.3 5.4 0.00012 26.1 5.7 58 42-107 19-87 (133)
291 cd03019 DsbA_DsbA DsbA family, 84.3 2 4.3E-05 28.5 4.0 26 87-112 134-159 (178)
292 KOG3171|consensus 83.8 2 4.4E-05 30.5 3.9 70 45-117 162-234 (273)
293 PTZ00253 tryparedoxin peroxida 83.7 5 0.00011 27.6 5.9 25 41-65 35-61 (199)
294 PF11287 DUF3088: Protein of u 83.3 5.4 0.00012 25.3 5.3 49 52-104 23-76 (112)
295 cd05295 MDH_like Malate dehydr 83.1 4.3 9.4E-05 32.0 5.8 68 51-118 2-82 (452)
296 COG1651 DsbG Protein-disulfide 82.9 1.9 4E-05 30.5 3.5 29 88-116 207-235 (244)
297 PRK10954 periplasmic protein d 79.3 1.3 2.9E-05 30.8 1.7 21 43-63 39-59 (207)
298 PF07449 HyaE: Hydrogenase-1 e 79.0 2.3 4.9E-05 26.8 2.5 67 42-113 26-101 (107)
299 cd03024 DsbA_FrnE DsbA family, 78.7 4.7 0.0001 27.4 4.3 29 88-116 167-196 (201)
300 PF02630 SCO1-SenC: SCO1/SenC; 78.0 9.2 0.0002 25.8 5.5 54 40-93 50-114 (174)
301 TIGR01689 EcbF-BcbF capsule bi 77.9 13 0.00028 24.0 5.9 51 28-78 25-88 (126)
302 COG1999 Uncharacterized protei 77.8 9 0.0002 26.8 5.5 53 40-94 65-127 (207)
303 COG3011 Predicted thiol-disulf 76.5 19 0.00041 23.7 6.7 74 41-117 6-83 (137)
304 TIGR03759 conj_TIGR03759 integ 76.2 22 0.00047 25.0 6.9 36 41-76 108-143 (200)
305 PF10865 DUF2703: Domain of un 76.1 8.7 0.00019 24.7 4.7 49 51-107 13-72 (120)
306 PF01323 DSBA: DSBA-like thior 75.0 3.8 8.2E-05 27.5 3.0 33 44-76 1-38 (193)
307 PF09822 ABC_transp_aux: ABC-t 74.7 21 0.00045 25.8 6.9 71 27-100 11-92 (271)
308 PRK09301 circadian clock prote 68.4 13 0.00028 23.2 4.0 67 45-118 9-87 (103)
309 PF03227 GILT: Gamma interfero 68.3 5.7 0.00012 24.7 2.5 16 44-59 2-17 (108)
310 TIGR02654 circ_KaiB circadian 67.3 13 0.00029 22.4 3.8 66 45-117 6-83 (87)
311 COG1651 DsbG Protein-disulfide 66.9 7 0.00015 27.6 3.0 24 43-66 86-109 (244)
312 KOG3170|consensus 65.4 13 0.00029 26.3 3.9 63 35-102 104-167 (240)
313 COG1331 Highly conserved prote 63.8 12 0.00027 30.9 4.0 66 37-102 38-115 (667)
314 PF06053 DUF929: Domain of unk 63.3 4.8 0.0001 29.2 1.6 29 40-68 55-89 (249)
315 cd03025 DsbA_FrnE_like DsbA fa 60.9 6.5 0.00014 26.4 1.8 23 44-66 2-24 (193)
316 PF09673 TrbC_Ftype: Type-F co 59.0 42 0.00092 21.0 5.2 65 33-104 14-80 (113)
317 TIGR01162 purE phosphoribosyla 58.8 53 0.0012 22.1 5.8 68 51-118 9-100 (156)
318 cd06388 PBP1_iGluR_AMPA_GluR4 57.5 82 0.0018 23.9 7.5 86 32-117 52-147 (371)
319 KOG4700|consensus 57.2 11 0.00025 26.0 2.5 41 83-123 100-141 (207)
320 cd02978 KaiB_like KaiB-like fa 56.9 20 0.00043 20.9 3.1 51 45-102 4-61 (72)
321 TIGR02742 TrbC_Ftype type-F co 55.6 55 0.0012 21.3 6.5 16 87-102 62-77 (130)
322 cd02974 AhpF_NTD_N Alkyl hydro 54.6 32 0.00068 20.9 3.9 24 44-68 22-45 (94)
323 PF15643 Tox-PL-2: Papain fold 53.0 52 0.0011 20.4 4.7 53 52-108 20-73 (100)
324 TIGR03865 PQQ_CXXCW PQQ-depend 52.8 28 0.00061 23.2 3.9 29 41-69 115-143 (162)
325 KOG2640|consensus 51.8 1.9 4.1E-05 32.2 -2.1 58 43-104 77-139 (319)
326 PF07511 DUF1525: Protein of u 51.0 26 0.00057 22.3 3.2 25 92-116 79-104 (114)
327 COG3917 NahD 2-hydroxychromene 47.9 51 0.0011 23.0 4.4 26 92-117 172-197 (203)
328 TIGR02652 conserved hypothetic 46.9 6.3 0.00014 26.1 -0.0 14 51-64 10-23 (163)
329 PF09654 DUF2396: Protein of u 46.7 6.1 0.00013 26.1 -0.1 15 51-65 7-21 (161)
330 COG2761 FrnE Predicted dithiol 45.5 21 0.00045 25.6 2.3 52 43-94 6-69 (225)
331 COG1225 Bcp Peroxiredoxin [Pos 44.4 97 0.0021 20.9 5.7 57 41-100 29-92 (157)
332 PF01216 Calsequestrin: Calseq 43.4 21 0.00046 27.4 2.2 68 33-107 41-125 (383)
333 PRK15317 alkyl hydroperoxide r 43.1 55 0.0012 26.0 4.7 23 45-68 23-45 (517)
334 TIGR03757 conj_TIGR03757 integ 43.1 38 0.00083 21.5 3.1 25 92-116 80-105 (113)
335 COG3581 Uncharacterized protei 43.0 55 0.0012 25.6 4.4 33 44-76 72-111 (420)
336 cd06381 PBP1_iGluR_delta_like 42.6 1.5E+02 0.0032 22.5 8.2 85 32-116 51-160 (363)
337 PRK13730 conjugal transfer pil 42.1 81 0.0018 22.4 4.8 18 85-102 151-168 (212)
338 cd03022 DsbA_HCCA_Iso DsbA fam 42.0 27 0.00059 23.3 2.5 22 45-66 1-22 (192)
339 cd06389 PBP1_iGluR_AMPA_GluR2 39.5 1.7E+02 0.0036 22.1 6.8 73 33-105 47-129 (370)
340 PF00731 AIRC: AIR carboxylase 38.9 70 0.0015 21.4 4.0 39 52-90 12-50 (150)
341 KOG2603|consensus 38.4 55 0.0012 24.7 3.7 51 45-102 64-132 (331)
342 COG0041 PurE Phosphoribosylcar 38.0 1.3E+02 0.0028 20.4 5.9 66 51-116 13-102 (162)
343 cd06387 PBP1_iGluR_AMPA_GluR3 37.9 1.7E+02 0.0036 22.4 6.4 83 33-115 53-145 (372)
344 PF15379 DUF4606: Domain of un 37.1 31 0.00066 21.6 1.9 18 48-65 29-46 (104)
345 KOG4498|consensus 36.9 33 0.00071 24.0 2.2 30 36-65 44-75 (197)
346 PF11711 Tim54: Inner membrane 35.2 1.3E+02 0.0027 23.5 5.3 38 41-78 66-112 (382)
347 PF07689 KaiB: KaiB domain; I 34.7 9.9 0.00021 22.7 -0.5 49 47-102 2-57 (82)
348 PF15616 TerY-C: TerY-C metal 34.6 12 0.00025 24.5 -0.3 13 48-60 75-87 (131)
349 KOG2454|consensus 34.2 1E+02 0.0023 24.3 4.7 40 35-74 209-253 (583)
350 PF13743 Thioredoxin_5: Thiore 33.7 46 0.001 22.5 2.6 20 47-66 2-21 (176)
351 PRK02935 hypothetical protein; 33.3 8.9 0.00019 24.1 -0.9 17 52-68 72-88 (110)
352 PF11238 DUF3039: Protein of u 32.7 26 0.00057 19.5 1.0 13 51-63 45-57 (58)
353 PF00837 T4_deiodinase: Iodoth 31.6 27 0.00058 25.2 1.2 27 40-66 100-127 (237)
354 cd04911 ACT_AKiii-YclM-BS_1 AC 31.3 67 0.0015 18.8 2.7 22 52-73 14-35 (76)
355 cd03024 DsbA_FrnE DsbA family, 30.7 45 0.00098 22.4 2.2 21 45-65 1-21 (201)
356 PF11399 DUF3192: Protein of u 30.4 46 0.00099 20.8 1.9 19 94-112 79-97 (102)
357 PLN02907 glutamate-tRNA ligase 30.0 3.4E+02 0.0074 23.0 7.4 58 45-119 3-61 (722)
358 cd01896 DRG The developmentall 30.0 1E+02 0.0023 21.7 4.0 49 55-105 137-185 (233)
359 KOG2433|consensus 29.7 2.9E+02 0.0063 22.0 7.9 64 40-104 445-510 (577)
360 PF07728 AAA_5: AAA domain (dy 29.5 1.5E+02 0.0032 18.6 4.4 37 44-80 1-37 (139)
361 cd00755 YgdL_like Family of ac 29.0 84 0.0018 22.4 3.3 29 48-76 151-181 (231)
362 KOG1734|consensus 28.6 27 0.00059 25.8 0.8 16 50-65 270-285 (328)
363 PF13451 zf-trcl: Probable zin 28.3 41 0.00088 18.0 1.3 14 50-63 33-46 (49)
364 COG3340 PepE Peptidase E [Amin 28.2 2.3E+02 0.005 20.3 7.3 68 31-105 19-93 (224)
365 PF10087 DUF2325: Uncharacteri 27.9 1.4E+02 0.003 17.8 5.5 42 33-74 39-82 (97)
366 PF04566 RNA_pol_Rpb2_4: RNA p 27.7 76 0.0016 17.8 2.4 25 100-124 1-32 (63)
367 PF14437 MafB19-deam: MafB19-l 27.6 1.9E+02 0.0042 19.3 5.4 32 42-73 99-132 (146)
368 PLN00020 ribulose bisphosphate 27.4 2E+02 0.0043 22.7 5.2 34 45-78 151-184 (413)
369 KOG3160|consensus 27.3 48 0.001 23.6 1.8 18 42-59 40-57 (220)
370 TIGR03140 AhpF alkyl hydropero 27.3 1.1E+02 0.0023 24.5 4.0 23 45-68 23-45 (515)
371 TIGR01917 gly_red_sel_B glycin 27.1 1.4E+02 0.0031 23.6 4.4 30 43-73 337-370 (431)
372 PF00763 THF_DHG_CYH: Tetrahyd 26.8 1E+02 0.0023 19.3 3.2 41 55-95 46-86 (117)
373 KOG3267|consensus 26.7 9.5 0.00021 24.1 -1.5 20 5-24 27-46 (138)
374 COG1163 DRG Predicted GTPase [ 26.4 2.7E+02 0.0059 21.5 5.7 59 56-117 201-261 (365)
375 COG1590 Uncharacterized conser 26.2 1.2E+02 0.0026 21.5 3.6 27 27-55 23-49 (208)
376 KOG1467|consensus 26.0 3.6E+02 0.0079 21.9 7.7 61 37-100 354-414 (556)
377 PRK10670 hypothetical protein; 25.8 1.7E+02 0.0036 19.4 4.2 37 58-94 3-39 (159)
378 TIGR01918 various_sel_PB selen 25.7 1.6E+02 0.0034 23.3 4.5 30 43-73 337-370 (431)
379 PF03470 zf-XS: XS zinc finger 25.2 22 0.00047 18.6 -0.1 6 53-58 1-6 (43)
380 PF05673 DUF815: Protein of un 24.8 2.8E+02 0.0061 20.2 5.9 39 41-79 51-90 (249)
381 cd03021 DsbA_GSTK DsbA family, 24.7 1.1E+02 0.0023 21.1 3.3 22 44-65 2-23 (209)
382 PF12689 Acid_PPase: Acid Phos 24.3 2.3E+02 0.0051 19.2 6.2 73 31-105 49-133 (169)
383 TIGR02808 short_TIGR02808 cons 23.5 37 0.00081 17.4 0.5 20 85-104 5-24 (42)
384 PRK15116 sulfur acceptor prote 23.1 1.4E+02 0.0029 22.0 3.6 22 48-69 170-192 (268)
385 cd04336 YeaK YeaK is an unchar 22.5 2E+02 0.0043 18.6 4.0 24 57-80 2-25 (153)
386 PF07895 DUF1673: Protein of u 21.1 23 0.00049 24.9 -0.8 12 50-61 11-22 (205)
387 PF02780 Transketolase_C: Tran 21.0 1.3E+02 0.0028 18.7 2.9 37 41-77 8-45 (124)
388 PF11793 FANCL_C: FANCL C-term 20.9 84 0.0018 17.9 1.8 11 46-58 53-63 (70)
389 TIGR03439 methyl_EasF probable 20.8 1.7E+02 0.0036 22.1 3.7 28 50-77 82-114 (319)
390 PF14816 FAM178: Family of unk 20.4 2.3E+02 0.0051 22.0 4.5 64 9-72 148-215 (377)
391 PF04805 Pox_E10: E10-like pro 20.3 1.1E+02 0.0023 17.7 2.0 19 50-68 15-34 (70)
392 KOG0342|consensus 20.2 1.8E+02 0.0039 23.6 3.9 46 33-79 321-366 (543)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.93 E-value=6.5e-26 Score=141.53 Aligned_cols=91 Identities=34% Similarity=0.651 Sum_probs=84.9
Q ss_pred HHhhCCCcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHH
Q psy1889 37 QDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKAL 116 (127)
Q Consensus 37 ~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~ 116 (127)
.+.+++++|+||+++|||+|++++.+|++++++|..++++.++++.+.++++.+..|..++|++|++|++|||++++.++
T Consensus 2 ~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 2 RRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred hhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 35678899999999999999999999999999999999999888778888898888999999999999999999999999
Q ss_pred HHcCCcccccC
Q psy1889 117 YEKGELHPLVQ 127 (127)
Q Consensus 117 ~~~~~L~~~L~ 127 (127)
+++|.|.++|+
T Consensus 82 ~~~G~L~~~l~ 92 (99)
T TIGR02189 82 HISGSLVPMLK 92 (99)
T ss_pred HHcCCHHHHHH
Confidence 99999999874
No 2
>PHA03050 glutaredoxin; Provisional
Probab=99.93 E-value=3.7e-25 Score=139.96 Aligned_cols=95 Identities=31% Similarity=0.602 Sum_probs=87.6
Q ss_pred HHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhcCC---CCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEee
Q psy1889 33 KQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKV---TPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGG 109 (127)
Q Consensus 33 ~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i---~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg 109 (127)
.+++.+.++.++|+||+++|||||++++.+|+++++ +|+.++++......+.++++.+..|..++|++|++|++|||
T Consensus 3 ~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG 82 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGG 82 (108)
T ss_pred HHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeC
Confidence 467788889999999999999999999999999999 79999999866666889999999999999999999999999
Q ss_pred cHHHHHHHHcCCcccccC
Q psy1889 110 GTDVKALYEKGELHPLVQ 127 (127)
Q Consensus 110 ~~~l~~~~~~~~L~~~L~ 127 (127)
++++.+++.+|.|.++|+
T Consensus 83 ~ddl~~l~~~g~L~~~l~ 100 (108)
T PHA03050 83 YSDLLEIDNMDALGDILS 100 (108)
T ss_pred hHHHHHHHHcCCHHHHHH
Confidence 999999999999998874
No 3
>PRK10824 glutaredoxin-4; Provisional
Probab=99.91 E-value=3e-24 Score=136.67 Aligned_cols=93 Identities=23% Similarity=0.429 Sum_probs=85.7
Q ss_pred HHHHHHHhhCCCcEEEEEe-----CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeE
Q psy1889 32 SKQFVQDLIASEKIVIFSK-----SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKF 106 (127)
Q Consensus 32 ~~~~~~~~~~~~~ivvf~~-----~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~ 106 (127)
..+.+.+++++++|+||.. |+||+|++++.+|++++++|..++++.++ +.+.++.+..|.+++|+||++|++
T Consensus 4 ~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~---~~~~~l~~~sg~~TVPQIFI~G~~ 80 (115)
T PRK10824 4 TIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNP---DIRAELPKYANWPTFPQLWVDGEL 80 (115)
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCH---HHHHHHHHHhCCCCCCeEEECCEE
Confidence 4677889999999999998 59999999999999999999999998753 578889999999999999999999
Q ss_pred EeecHHHHHHHHcCCcccccC
Q psy1889 107 IGGGTDVKALYEKGELHPLVQ 127 (127)
Q Consensus 107 igg~~~l~~~~~~~~L~~~L~ 127 (127)
|||++++.+++.+|.|.++|+
T Consensus 81 IGG~ddl~~l~~~G~L~~lL~ 101 (115)
T PRK10824 81 VGGCDIVIEMYQRGELQQLIK 101 (115)
T ss_pred EcChHHHHHHHHCCCHHHHHH
Confidence 999999999999999999874
No 4
>KOG1752|consensus
Probab=99.91 E-value=1.1e-23 Score=131.64 Aligned_cols=95 Identities=51% Similarity=0.912 Sum_probs=90.4
Q ss_pred HHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHH
Q psy1889 33 KQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTD 112 (127)
Q Consensus 33 ~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~ 112 (127)
.+++.+++..++|++|+.+|||+|++++.+|...++.+..++++.++++.++++++.+..+.+++|.+|++|++|||.++
T Consensus 4 ~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~d 83 (104)
T KOG1752|consen 4 EAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASD 83 (104)
T ss_pred HHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccccC
Q psy1889 113 VKALYEKGELHPLVQ 127 (127)
Q Consensus 113 l~~~~~~~~L~~~L~ 127 (127)
+.+++.+|.|.++|+
T Consensus 84 l~~lh~~G~L~~~l~ 98 (104)
T KOG1752|consen 84 LMALHKSGELVPLLK 98 (104)
T ss_pred HHHHHHcCCHHHHHH
Confidence 999999999998874
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.90 E-value=2e-23 Score=129.83 Aligned_cols=90 Identities=22% Similarity=0.483 Sum_probs=82.3
Q ss_pred HHHHHhhCCCcEEEEEe-----CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEe
Q psy1889 34 QFVQDLIASEKIVIFSK-----SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIG 108 (127)
Q Consensus 34 ~~~~~~~~~~~ivvf~~-----~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~ig 108 (127)
+.+++++.+++|+||.. +|||+|.+++.+|++++++|..++++.++ +.++++.+..|..++|++|++|+.||
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~---~~~~~l~~~tg~~tvP~vfi~g~~iG 79 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDP---EIRQGIKEYSNWPTIPQLYVKGEFVG 79 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCH---HHHHHHHHHhCCCCCCEEEECCEEEe
Confidence 56778889999999986 89999999999999999999999997553 66788988899999999999999999
Q ss_pred ecHHHHHHHHcCCccccc
Q psy1889 109 GGTDVKALYEKGELHPLV 126 (127)
Q Consensus 109 g~~~l~~~~~~~~L~~~L 126 (127)
|++++.+++++|.|.++|
T Consensus 80 G~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 80 GCDIIMEMYQSGELQTLL 97 (97)
T ss_pred ChHHHHHHHHCcChHHhC
Confidence 999999999999999876
No 6
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.88 E-value=4.5e-22 Score=119.99 Aligned_cols=82 Identities=57% Similarity=1.023 Sum_probs=76.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC--CEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHcCCc
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVT--PKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGEL 122 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~--~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~~~L 122 (127)
|++|+++|||+|++++++|++++++ |+.++++.+++..+..+++.+.++..++|++|++|+.+||++++.+++++|.|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l 80 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence 5789999999999999999999998 99999998877677788899999999999999999999999999999999999
Q ss_pred cccc
Q psy1889 123 HPLV 126 (127)
Q Consensus 123 ~~~L 126 (127)
.++|
T Consensus 81 ~~~~ 84 (84)
T TIGR02180 81 AELL 84 (84)
T ss_pred hhhC
Confidence 9876
No 7
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.87 E-value=8.8e-22 Score=120.90 Aligned_cols=84 Identities=27% Similarity=0.533 Sum_probs=76.9
Q ss_pred HHhhCCCcEEEEEe-----CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecH
Q psy1889 37 QDLIASEKIVIFSK-----SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGT 111 (127)
Q Consensus 37 ~~~~~~~~ivvf~~-----~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~ 111 (127)
.+.+++++|+||+. +|||+|++++.+|++.+++|..++++.+. +.++++.+..|..++|++|++|+.|||++
T Consensus 2 ~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~---~~~~~l~~~~g~~tvP~vfi~g~~iGG~~ 78 (90)
T cd03028 2 KKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDE---EVRQGLKEYSNWPTFPQLYVNGELVGGCD 78 (90)
T ss_pred hhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCH---HHHHHHHHHhCCCCCCEEEECCEEEeCHH
Confidence 45678899999987 69999999999999999999999998653 67888999999999999999999999999
Q ss_pred HHHHHHHcCCcc
Q psy1889 112 DVKALYEKGELH 123 (127)
Q Consensus 112 ~l~~~~~~~~L~ 123 (127)
++.+++++|+|+
T Consensus 79 ~l~~l~~~g~L~ 90 (90)
T cd03028 79 IVKEMHESGELQ 90 (90)
T ss_pred HHHHHHHcCCcC
Confidence 999999999985
No 8
>PRK10638 glutaredoxin 3; Provisional
Probab=99.86 E-value=3.1e-21 Score=116.70 Aligned_cols=82 Identities=28% Similarity=0.660 Sum_probs=75.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHcCCc
Q psy1889 43 EKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGEL 122 (127)
Q Consensus 43 ~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~~~L 122 (127)
.+|++|+.+|||+|++++.+|++.+++|..++++.++ +..+++.+..|..++|+++++|+.+||++++.+++.+|.|
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~---~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l 78 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA---AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGL 78 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH---HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCH
Confidence 3689999999999999999999999999999998754 3467788888999999999999999999999999999999
Q ss_pred ccccC
Q psy1889 123 HPLVQ 127 (127)
Q Consensus 123 ~~~L~ 127 (127)
.+.||
T Consensus 79 ~~~~~ 83 (83)
T PRK10638 79 DPLLK 83 (83)
T ss_pred HHHhC
Confidence 99886
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.86 E-value=2.4e-21 Score=116.02 Aligned_cols=79 Identities=34% Similarity=0.753 Sum_probs=72.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHcCCccc
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHP 124 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~~~L~~ 124 (127)
|++|+++|||+|++++.+|++++++|+.++++.++ +..+++.+..|..++|++|++|+.+||++++.+++++|.|.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~---~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~ 77 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP---ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDP 77 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH---HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhh
Confidence 57899999999999999999999999999998765 456678888899999999999999999999999999999998
Q ss_pred cc
Q psy1889 125 LV 126 (127)
Q Consensus 125 ~L 126 (127)
+|
T Consensus 78 ~l 79 (79)
T TIGR02181 78 LL 79 (79)
T ss_pred hC
Confidence 76
No 10
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.86 E-value=8.8e-21 Score=113.96 Aligned_cols=82 Identities=56% Similarity=0.995 Sum_probs=76.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHcCCcc
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELH 123 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~~~L~ 123 (127)
+|++|+++|||+|++++++|++++++|+.++++.+++..+.+.++.+.+|..++|++|++|+.+||++++.++.++|.|+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~ 80 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV 80 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence 58899999999999999999999999999999988776677788889999999999999999999999999999999998
Q ss_pred cc
Q psy1889 124 PL 125 (127)
Q Consensus 124 ~~ 125 (127)
++
T Consensus 81 ~~ 82 (82)
T cd03419 81 KL 82 (82)
T ss_pred CC
Confidence 64
No 11
>PTZ00062 glutaredoxin; Provisional
Probab=99.86 E-value=1.2e-20 Score=131.13 Aligned_cols=113 Identities=22% Similarity=0.431 Sum_probs=94.6
Q ss_pred cchhhHHHHHHHcCCCCCCChhHHHHHHHhhCCCcEEEEEe-----CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHH
Q psy1889 10 NFGLKTSFLETLGASSKVMNPASKQFVQDLIASEKIVIFSK-----SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSI 84 (127)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvf~~-----~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~ 84 (127)
|..-+...+.......+ .....+.+.+++..++|+||.. |+||+|++++.+|++.+++|..++|+.++ +.
T Consensus 82 ~~~~~~~~~~~~~~~~~--~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~---~~ 156 (204)
T PTZ00062 82 NTSTLVSFIRGWAQKGS--SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDP---DL 156 (204)
T ss_pred CHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCH---HH
Confidence 34444455555433322 3457788999999999999987 69999999999999999999999999764 56
Q ss_pred HHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHcCCcccccC
Q psy1889 85 QDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127 (127)
Q Consensus 85 ~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~~~L~~~L~ 127 (127)
++++.+..|.+++|++|++|++|||++++.+++++|.|.++|.
T Consensus 157 ~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~~~G~L~~~l~ 199 (204)
T PTZ00062 157 REELKVYSNWPTYPQLYVNGELIGGHDIIKELYESNSLRKVIP 199 (204)
T ss_pred HHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHHcCChhhhhh
Confidence 7889988999999999999999999999999999999998873
No 12
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.82 E-value=1.9e-19 Score=106.52 Aligned_cols=74 Identities=34% Similarity=0.705 Sum_probs=66.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCC-cccEEEECCeEEeecHHHHHHHHcC
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGAR-SVPRVFVNGKFIGGGTDVKALYEKG 120 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~-~~P~i~~~g~~igg~~~l~~~~~~~ 120 (127)
+|++|+.++||+|++++.+|++++++|..++++.++ +..+++.+..+.. ++|++|++|+.+||++++.+++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~---~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDP---ALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCH---HHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 478999999999999999999999999999998763 4456677777877 9999999999999999999999886
No 13
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.1e-19 Score=107.24 Aligned_cols=79 Identities=33% Similarity=0.725 Sum_probs=69.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHcCCcc
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELH 123 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~~~L~ 123 (127)
.+++|+.++||||.+++.+|++.+++|.+++++.++. ++.++.+....|.+++|+||++|+.+||.+++.++...+.|.
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l~ 80 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKLD 80 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccCC
Confidence 5889999999999999999999999999999998764 344555555558999999999999999999999999988763
No 14
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.81 E-value=1.5e-19 Score=119.77 Aligned_cols=81 Identities=30% Similarity=0.630 Sum_probs=73.7
Q ss_pred cEEEEEeC------CChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCC----CcccEEEECCeEEeecHHH
Q psy1889 44 KIVIFSKS------YCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGA----RSVPRVFVNGKFIGGGTDV 113 (127)
Q Consensus 44 ~ivvf~~~------~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~----~~~P~i~~~g~~igg~~~l 113 (127)
+|+||+++ +||+|++++.+|+.++++|.++||+++. +..+++.+..+. .++|++|++|++|||++++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~---~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS---GFREELRELLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH---HHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 47899999 9999999999999999999999999865 567778877665 8999999999999999999
Q ss_pred HHHHHcCCcccccC
Q psy1889 114 KALYEKGELHPLVQ 127 (127)
Q Consensus 114 ~~~~~~~~L~~~L~ 127 (127)
.+++++|.|.++|+
T Consensus 78 ~~L~e~G~L~~lL~ 91 (147)
T cd03031 78 LRLNESGELRKLLK 91 (147)
T ss_pred HHHHHcCCHHHHHh
Confidence 99999999999874
No 15
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.80 E-value=3.6e-19 Score=105.08 Aligned_cols=71 Identities=28% Similarity=0.477 Sum_probs=65.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
+|++|+.++||+|++++.+|++++++|+.+++..++ +..+++.+..+..++|++|++|+.|||++++.++.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~---~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFP---ERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 688999999999999999999999999999999765 45677888889999999999999999999999874
No 16
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.80 E-value=3.9e-19 Score=106.57 Aligned_cols=74 Identities=32% Similarity=0.641 Sum_probs=65.4
Q ss_pred hCCCcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 40 IASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 40 ~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
..+++|+||+++|||+|++++.+|++++++|+.++++.+.. ..++.+.+|..++|++|++|+.+||++++.+++
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~----~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDAR----GRSLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChH----HHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 45678999999999999999999999999999999987643 235666779999999999999999999998875
No 17
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.2e-19 Score=108.90 Aligned_cols=94 Identities=27% Similarity=0.481 Sum_probs=86.4
Q ss_pred hHHHHHHHhhCCCcEEEEEe-----CCChhHHHHHHHHHhcC-CCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECC
Q psy1889 31 ASKQFVQDLIASEKIVIFSK-----SYCPYCKMAKDVFQKLK-VTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNG 104 (127)
Q Consensus 31 ~~~~~~~~~~~~~~ivvf~~-----~~Cp~C~~~~~~l~~~~-i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g 104 (127)
.+.+.+++.+++++|++|.. |-|+++.++.++|...+ ++|..+||-.++ ++++.+++..++.++|++|++|
T Consensus 3 ~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~---eiR~~lk~~s~WPT~PQLyi~G 79 (105)
T COG0278 3 EILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDP---EIRQGLKEYSNWPTFPQLYVNG 79 (105)
T ss_pred hHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCH---HHHhccHhhcCCCCCceeeECC
Confidence 45678889999999999985 88999999999999999 789999998875 7888999999999999999999
Q ss_pred eEEeecHHHHHHHHcCCcccccC
Q psy1889 105 KFIGGGTDVKALYEKGELHPLVQ 127 (127)
Q Consensus 105 ~~igg~~~l~~~~~~~~L~~~L~ 127 (127)
++|||++-+.++.++|+|+++|+
T Consensus 80 EfvGG~DIv~Em~q~GELq~~l~ 102 (105)
T COG0278 80 EFVGGCDIVREMYQSGELQTLLK 102 (105)
T ss_pred EEeccHHHHHHHHHcchHHHHHH
Confidence 99999999999999999999874
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.78 E-value=2.1e-18 Score=101.51 Aligned_cols=70 Identities=31% Similarity=0.675 Sum_probs=62.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
+|++|+.+|||+|++++.+|++++++|..++++.+.. ..++....|..++|++|++|+.+||++++.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~----~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDIT----GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChh----HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 5899999999999999999999999999999987652 345777779999999999999999999999875
No 19
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.75 E-value=1.9e-17 Score=100.46 Aligned_cols=73 Identities=33% Similarity=0.574 Sum_probs=61.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHh-----cCCCCEEEEccCCCCchHHHHHHHHhcC--CCcccEEEECCeEEeecHHHHHH
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQK-----LKVTPKTVELDHRDDGDSIQDVLLEITG--ARSVPRVFVNGKFIGGGTDVKAL 116 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~-----~~i~~~~i~i~~~~~~~~~~~~l~~~~~--~~~~P~i~~~g~~igg~~~l~~~ 116 (127)
.|++|+.+|||+|++++++|++ .+++|..++++.+.. ..+++....+ ..++|++|++|+.+||++++.++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~---~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGI---SKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChH---HHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHH
Confidence 5889999999999999999999 688999999987542 2345666555 48999999999999999999999
Q ss_pred HHc
Q psy1889 117 YEK 119 (127)
Q Consensus 117 ~~~ 119 (127)
+++
T Consensus 79 ~~~ 81 (85)
T PRK11200 79 VKE 81 (85)
T ss_pred HHH
Confidence 765
No 20
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.74 E-value=2.2e-17 Score=100.53 Aligned_cols=74 Identities=31% Similarity=0.594 Sum_probs=60.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC-----CCCEEEEccCCCCchHHHHHHHHhcCC--CcccEEEECCeEEeecHHHHHHH
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLK-----VTPKTVELDHRDDGDSIQDVLLEITGA--RSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~~~~~~~~~~l~~~~~~--~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
|++|+++|||+|++++.+|++++ +.|..++++.+. ...+++...++. .++|++|++|+.+||++++.+++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~---~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG---ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH---HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHH
Confidence 67899999999999999999985 567777777542 123456667675 89999999999999999999998
Q ss_pred HcCC
Q psy1889 118 EKGE 121 (127)
Q Consensus 118 ~~~~ 121 (127)
+++.
T Consensus 79 ~~~~ 82 (86)
T TIGR02183 79 KENF 82 (86)
T ss_pred Hhcc
Confidence 8754
No 21
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.74 E-value=2.8e-17 Score=95.51 Aligned_cols=71 Identities=42% Similarity=0.818 Sum_probs=64.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
+|++|+++|||+|++++++|++++++|..+++..++ +..+++.+..+..++|++|++|+.+||++++.++.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~---~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDG---ELREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCH---HHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 578999999999999999999999999999998765 35677888889999999999999999999998875
No 22
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.70 E-value=6.6e-17 Score=123.02 Aligned_cols=83 Identities=27% Similarity=0.478 Sum_probs=69.7
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHH-----HhcCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 43 EKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLL-----EITGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 43 ~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~-----~~~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
.+|+||+.+|||+|++++.+|++.+++|+.++|+.++...+...++. ...|..++|++|++|+.|||++++..
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~-- 79 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA-- 79 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH--
Confidence 36899999999999999999999999999999997764433333332 23578899999999999999999987
Q ss_pred HcCCcccccC
Q psy1889 118 EKGELHPLVQ 127 (127)
Q Consensus 118 ~~~~L~~~L~ 127 (127)
++|.|.++|+
T Consensus 80 ~~g~l~~~~~ 89 (410)
T PRK12759 80 RAGEVIARVK 89 (410)
T ss_pred HhCCHHHHhc
Confidence 8999988764
No 23
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.68 E-value=1.7e-16 Score=90.19 Aligned_cols=60 Identities=38% Similarity=0.862 Sum_probs=55.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEE
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFI 107 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~i 107 (127)
|++|+.+|||+|++++.+|++.+++|+.++++.++ +.++++.+..|..++|++|+||+.|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~---~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE---EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH---HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch---hHHHHHHHHcCCCccCEEEECCEEC
Confidence 67899999999999999999999999999999875 5677888888999999999999976
No 24
>KOG0911|consensus
Probab=99.63 E-value=2.4e-15 Score=104.29 Aligned_cols=90 Identities=23% Similarity=0.454 Sum_probs=83.6
Q ss_pred HHHHhhCCCcEEEEEe-----CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEee
Q psy1889 35 FVQDLIASEKIVIFSK-----SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGG 109 (127)
Q Consensus 35 ~~~~~~~~~~ivvf~~-----~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg 109 (127)
.+..+.+.+++++|.. |.|++.+++..+|.+++++|..+||..|+ ++++.++..+++.++|++|++|+++||
T Consensus 131 ~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~De---elRqglK~fSdWPTfPQlyI~GEFiGG 207 (227)
T KOG0911|consen 131 RLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDE---ELRQGLKEFSDWPTFPQLYVKGEFIGG 207 (227)
T ss_pred HHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCH---HHHHHhhhhcCCCCccceeECCEeccC
Confidence 6777889999999985 78999999999999999999999999886 688889999999999999999999999
Q ss_pred cHHHHHHHHcCCcccccC
Q psy1889 110 GTDVKALYEKGELHPLVQ 127 (127)
Q Consensus 110 ~~~l~~~~~~~~L~~~L~ 127 (127)
++-+.+++++|+|...|+
T Consensus 208 lDIl~~m~~~geL~~~l~ 225 (227)
T KOG0911|consen 208 LDILKEMHEKGELVYTLK 225 (227)
T ss_pred cHHHHHHhhcccHHHHhh
Confidence 999999999999998874
No 25
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.59 E-value=1.5e-14 Score=88.91 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=68.4
Q ss_pred EEEEEeCCC------hhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcC----CCcccEEEECCeEEeecHHHH
Q psy1889 45 IVIFSKSYC------PYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG----ARSVPRVFVNGKFIGGGTDVK 114 (127)
Q Consensus 45 ivvf~~~~C------p~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~----~~~~P~i~~~g~~igg~~~l~ 114 (127)
|+||+++-- ..|+.++.+|+..+++|++++|+.++ +.++++.++.+ ..++|+||++|++|||++++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~---~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE---ENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH---HHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 566776442 46888999999999999999999875 55677877765 489999999999999999999
Q ss_pred HHHHcCCcccccC
Q psy1889 115 ALYEKGELHPLVQ 127 (127)
Q Consensus 115 ~~~~~~~L~~~L~ 127 (127)
++.++|.|.++|+
T Consensus 79 ~l~e~g~L~~lLk 91 (92)
T cd03030 79 EAKENNTLEEFLK 91 (92)
T ss_pred HHHhCCCHHHHhC
Confidence 9999999999986
No 26
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.58 E-value=1.5e-14 Score=84.39 Aligned_cols=65 Identities=23% Similarity=0.564 Sum_probs=56.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecH
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGT 111 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~ 111 (127)
+|.+|+++|||+|++++++|++.+++|..++++.++ +..+++.+.++..++|+++++|+.+.|++
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~---~~~~~~~~~~~~~~vP~~~~~~~~~~g~~ 65 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDS---AAREEVLKVLGQRGVPVIVIGHKIIVGFD 65 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCH---HHHHHHHHHhCCCcccEEEECCEEEeeCC
Confidence 378899999999999999999999999999888654 34566778889999999999999988864
No 27
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.57 E-value=2.1e-14 Score=86.42 Aligned_cols=64 Identities=19% Similarity=0.349 Sum_probs=55.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecH
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGT 111 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~ 111 (127)
+|++|+++|||+|++++.+|++.+++|+.++++.++ +...++.. .|..++|++++++..+.|++
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~---~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP---EAAETLRA-QGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHH-cCCCCcCEEEECCEEEecCC
Confidence 588999999999999999999999999999999765 33444544 58899999999999999986
No 28
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.57 E-value=1.4e-14 Score=85.18 Aligned_cols=63 Identities=25% Similarity=0.491 Sum_probs=53.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCe-EEeecH
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGK-FIGGGT 111 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~-~igg~~ 111 (127)
|++|+.++||+|++++++|++++++|+.++++.++ +..+++.. .|..++|+++++|+ .++|++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~---~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP---EAIDYVKA-QGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHH-cCCcccCEEEECCCcEEeccC
Confidence 47899999999999999999999999999999765 33455554 48889999999765 898885
No 29
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.53 E-value=3e-14 Score=82.41 Aligned_cols=58 Identities=26% Similarity=0.494 Sum_probs=47.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEe
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKL-----KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIG 108 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~-----~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~ig 108 (127)
.|++|+++|||+|+.++++|+++ ++.+..++++.+ +++++++++.++|+++++|+.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~-------~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF-------PDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC-------HhHHHHcCCcccCEEEECCEEEE
Confidence 47889999999999999999886 355666666543 24788899999999999998765
No 30
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.48 E-value=4.6e-13 Score=77.84 Aligned_cols=66 Identities=26% Similarity=0.555 Sum_probs=56.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHH
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTD 112 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~ 112 (127)
++++|+++|||+|++++.+|++.+++|..++++.+. +..+++.+.++..++|+++.+|+.++|.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~---~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDP---EALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCH---HHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 478899999999999999999999999999987643 345567777788999999999999999864
No 31
>PHA02278 thioredoxin-like protein
Probab=99.47 E-value=7.6e-13 Score=83.03 Aligned_cols=68 Identities=16% Similarity=0.381 Sum_probs=49.2
Q ss_pred hCCCcEEE-EEeCCChhHHHHHHHHHhcCC------CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeec
Q psy1889 40 IASEKIVI-FSKSYCPYCKMAKDVFQKLKV------TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGG 110 (127)
Q Consensus 40 ~~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i------~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~ 110 (127)
.++.+++| |||+||++|+.+.|.++++.- ++..++++.++. + .+.+++++++.++||+ |.+|+.++..
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~--d-~~~l~~~~~I~~iPT~i~fk~G~~v~~~ 88 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDV--D-REKAVKLFDIMSTPVLIGYKDGQLVKKY 88 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcccc--c-cHHHHHHCCCccccEEEEEECCEEEEEE
Confidence 34556666 999999999999999987632 244455554321 1 3458899999999999 7799866544
No 32
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.43 E-value=9.8e-13 Score=83.70 Aligned_cols=64 Identities=19% Similarity=0.300 Sum_probs=48.2
Q ss_pred CCcEEE-EEeCCChhHHHHHHHHHhcCCC----CEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeec
Q psy1889 42 SEKIVI-FSKSYCPYCKMAKDVFQKLKVT----PKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGG 110 (127)
Q Consensus 42 ~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~----~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~ 110 (127)
+..++| |+++|||+|+.+.|.|+++.-. ...+.++.++. +++++.+++.++|++ |.+|+.++..
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~-----~~la~~~~V~~iPTf~~fk~G~~v~~~ 84 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV-----PDFNKMYELYDPPTVMFFFRNKHMKID 84 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC-----HHHHHHcCCCCCCEEEEEECCEEEEEE
Confidence 344555 9999999999999999886533 23445555543 459999999999999 7799977543
No 33
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.43 E-value=1.5e-12 Score=76.74 Aligned_cols=65 Identities=22% Similarity=0.545 Sum_probs=51.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhc-CCCcccEEEE-CCeEEeecH
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEIT-GARSVPRVFV-NGKFIGGGT 111 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~-~~~~~P~i~~-~g~~igg~~ 111 (127)
++++|+++|||+|++++++|++.+++|..++++.++. ..+.+.+.. +..++|+++. +|+.+....
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~---~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEG---AADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHh---HHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 4789999999999999999999999999999887643 234455554 8899999965 667665443
No 34
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.38 E-value=2e-12 Score=79.06 Aligned_cols=69 Identities=17% Similarity=0.324 Sum_probs=54.1
Q ss_pred HHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhc-----CCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEE
Q psy1889 33 KQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKL-----KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFI 107 (127)
Q Consensus 33 ~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~-----~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~i 107 (127)
.+.+..+.++-.|.+|+++|||+|+.+.++++++ ++++..++++.. +++++++++.++|++++||+.+
T Consensus 4 ~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~-------~e~a~~~~V~~vPt~vidG~~~ 76 (89)
T cd03026 4 LEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF-------QDEVEERGIMSVPAIFLNGELF 76 (89)
T ss_pred HHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC-------HHHHHHcCCccCCEEEECCEEE
Confidence 3455556566678889999999999999999876 355666666643 3588899999999999999866
Q ss_pred e
Q psy1889 108 G 108 (127)
Q Consensus 108 g 108 (127)
.
T Consensus 77 ~ 77 (89)
T cd03026 77 G 77 (89)
T ss_pred E
Confidence 4
No 35
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.32 E-value=1.8e-11 Score=72.95 Aligned_cols=62 Identities=26% Similarity=0.452 Sum_probs=45.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCe-EEeec
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKL----KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGK-FIGGG 110 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~----~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~-~igg~ 110 (127)
.|.+|+++|||+|+.+++.|+++ +..+....++.+.+ +++.+.+++.++|+++++|+ .+.|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~vPt~~~~g~~~~~G~ 68 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN-----PQKAMEYGIMAVPAIVINGDVEFIGA 68 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC-----HHHHHHcCCccCCEEEECCEEEEecC
Confidence 47789999999999999999764 33344455554433 24667799999999999987 44444
No 36
>PHA02125 thioredoxin-like protein
Probab=99.32 E-value=5.8e-12 Score=74.57 Aligned_cols=55 Identities=25% Similarity=0.483 Sum_probs=43.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEE
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFI 107 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~i 107 (127)
|++|+++||++|+.++++|++. .+..++++.++. +++++++++.++|++. +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~-----~~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEG-----VELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCC-----HHHHHHcCCceeCeEE-CCEEE
Confidence 6789999999999999999875 455666665543 4688999999999987 66644
No 37
>KOG0907|consensus
Probab=99.29 E-value=1.4e-11 Score=77.61 Aligned_cols=63 Identities=17% Similarity=0.373 Sum_probs=47.8
Q ss_pred CcEEE-EEeCCChhHHHHHHHHHhcCCCCE---EEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeec
Q psy1889 43 EKIVI-FSKSYCPYCKMAKDVFQKLKVTPK---TVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGG 110 (127)
Q Consensus 43 ~~ivv-f~~~~Cp~C~~~~~~l~~~~i~~~---~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~ 110 (127)
..+++ |+++|||+|+.+.|.+.++...|. .+.+|.++ .+++++.+++..+||+ +.+|+.++.+
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-----~~~~~~~~~V~~~PTf~f~k~g~~~~~~ 90 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-----LEEVAKEFNVKAMPTFVFYKGGEEVDEV 90 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-----CHhHHHhcCceEeeEEEEEECCEEEEEE
Confidence 45566 999999999999999999876554 34444443 3569999999999999 6688755433
No 38
>KOG0910|consensus
Probab=99.28 E-value=1.1e-11 Score=81.67 Aligned_cols=71 Identities=25% Similarity=0.460 Sum_probs=52.3
Q ss_pred HHHHHHHhhC-CCcEEE-EEeCCChhHHHHHHHHHhcCC----CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EEC
Q psy1889 32 SKQFVQDLIA-SEKIVI-FSKSYCPYCKMAKDVFQKLKV----TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVN 103 (127)
Q Consensus 32 ~~~~~~~~~~-~~~ivv-f~~~~Cp~C~~~~~~l~~~~i----~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~ 103 (127)
..++....++ +.+|+| |+|+||++|+.+.|.|+++.- .+....++.|+. .+++..|++.++|++ |.|
T Consensus 50 ~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~-----~ela~~Y~I~avPtvlvfkn 124 (150)
T KOG0910|consen 50 DSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH-----PELAEDYEISAVPTVLVFKN 124 (150)
T ss_pred HHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc-----cchHhhcceeeeeEEEEEEC
Confidence 3444555554 456777 999999999999999998753 334445555443 359999999999999 889
Q ss_pred CeEE
Q psy1889 104 GKFI 107 (127)
Q Consensus 104 g~~i 107 (127)
|+.+
T Consensus 125 Ge~~ 128 (150)
T KOG0910|consen 125 GEKV 128 (150)
T ss_pred CEEe
Confidence 9855
No 39
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.28 E-value=6.7e-11 Score=73.99 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=47.1
Q ss_pred CCcEEE-EEeCCChhHHHHHHHHHhcCC---CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeec
Q psy1889 42 SEKIVI-FSKSYCPYCKMAKDVFQKLKV---TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGG 110 (127)
Q Consensus 42 ~~~ivv-f~~~~Cp~C~~~~~~l~~~~i---~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~ 110 (127)
+..++| ||++||++|+.+.|.|+++.- ....+.++.+++ .....+++.+++.++|++ |.+|+.+...
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~--~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~ 87 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEN--DSTMELCRREKIIEVPHFLFYKDGEKIHEE 87 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCC--hHHHHHHHHcCCCcCCEEEEEeCCeEEEEE
Confidence 445555 999999999999999987533 234445554433 123468889999999999 6688865443
No 40
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.28 E-value=5.6e-11 Score=76.69 Aligned_cols=76 Identities=12% Similarity=0.240 Sum_probs=50.1
Q ss_pred HHHHhhC-CCc-EEEEEeCCChhHHHHHHHHHhcC----CCCEEEEccCCCC----chHHHHHHHHhcC----CCcccEE
Q psy1889 35 FVQDLIA-SEK-IVIFSKSYCPYCKMAKDVFQKLK----VTPKTVELDHRDD----GDSIQDVLLEITG----ARSVPRV 100 (127)
Q Consensus 35 ~~~~~~~-~~~-ivvf~~~~Cp~C~~~~~~l~~~~----i~~~~i~i~~~~~----~~~~~~~l~~~~~----~~~~P~i 100 (127)
.+.+.++ +.. ++.|+++|||+|+.+.|.|++.. .++..++++.+.. .+....++.+.++ +.++|++
T Consensus 15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~ 94 (122)
T TIGR01295 15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTF 94 (122)
T ss_pred HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEE
Confidence 3444444 444 44499999999999999997753 4566777775431 1112345666655 5569999
Q ss_pred --EECCeEEeec
Q psy1889 101 --FVNGKFIGGG 110 (127)
Q Consensus 101 --~~~g~~igg~ 110 (127)
|.+|+.++..
T Consensus 95 v~~k~Gk~v~~~ 106 (122)
T TIGR01295 95 VHITDGKQVSVR 106 (122)
T ss_pred EEEeCCeEEEEE
Confidence 7799877655
No 41
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.28 E-value=1.7e-11 Score=78.07 Aligned_cols=71 Identities=24% Similarity=0.374 Sum_probs=51.4
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcCCC---CEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeecHHHH
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLKVT---PKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGGTDVK 114 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~---~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~~~l~ 114 (127)
++..++| |+++||++|+.+.+.|+++.-. ...+.|+.+.. +.+++.+++.++|++ |.+|+.++....+.
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~-----~~l~~~~~v~~vPt~l~fk~G~~v~~~~g~~ 95 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA-----PFLVEKLNIKVLPTVILFKNGKTVDRIVGFE 95 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC-----HHHHHHCCCccCCEEEEEECCEEEEEEECcc
Confidence 3455555 9999999999999999885432 34455554442 458899999999999 77999877655444
Q ss_pred HH
Q psy1889 115 AL 116 (127)
Q Consensus 115 ~~ 116 (127)
.+
T Consensus 96 ~~ 97 (113)
T cd02989 96 EL 97 (113)
T ss_pred cc
Confidence 33
No 42
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.26 E-value=1.1e-11 Score=78.91 Aligned_cols=61 Identities=25% Similarity=0.426 Sum_probs=43.2
Q ss_pred HHhhCCCcEEE-EEeCCChhHHHHHHHHHhcCCC---CEEEEccCCCCchHHHHHHHHhcCCCcccEEEE
Q psy1889 37 QDLIASEKIVI-FSKSYCPYCKMAKDVFQKLKVT---PKTVELDHRDDGDSIQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 37 ~~~~~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~---~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~ 102 (127)
+++.++.++++ |+++|||+|+.++++|+++... .....++.+.. ++++..+++.++|++++
T Consensus 17 ~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~-----~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 17 KEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED-----KEKAEKYGVERVPTTIF 81 (113)
T ss_pred HHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC-----HHHHHHcCCCcCCEEEE
Confidence 33445556666 6899999999999999887532 23333443332 46889999999999944
No 43
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.22 E-value=4.9e-11 Score=75.65 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=47.5
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcCCC----CEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEE
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLKVT----PKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFI 107 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~----~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~i 107 (127)
.++.||| |+++|||+|+.+.|.|+++.-. .....++.++ .+++++.+++...|++ |.+|+++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe-----v~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK-----VPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc-----cHHHHHhcCceeCcEEEEEECCcEE
Confidence 4555666 9999999999999999997643 3344555544 2569999999999999 7788865
No 44
>KOG2824|consensus
Probab=99.20 E-value=3.3e-11 Score=86.03 Aligned_cols=82 Identities=28% Similarity=0.629 Sum_probs=71.0
Q ss_pred CcEEEEEe------CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcC----CCcccEEEECCeEEeecHH
Q psy1889 43 EKIVIFSK------SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG----ARSVPRVFVNGKFIGGGTD 112 (127)
Q Consensus 43 ~~ivvf~~------~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~----~~~~P~i~~~g~~igg~~~ 112 (127)
..||||++ .+--.|..++.+|+.+++.|.+.||+++. .+.++++...+ ...+|.+|++|++|||.++
T Consensus 131 ~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~---~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaee 207 (281)
T KOG2824|consen 131 DRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDS---EFREELQELLGEDEKAVSLPRVFVKGRYIGGAEE 207 (281)
T ss_pred ceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccH---HHHHHHHHHHhcccccCccCeEEEccEEeccHHH
Confidence 46888876 56789999999999999999999999986 45666666654 4689999999999999999
Q ss_pred HHHHHHcCCcccccC
Q psy1889 113 VKALYEKGELHPLVQ 127 (127)
Q Consensus 113 l~~~~~~~~L~~~L~ 127 (127)
+.++.+.|.|.++|+
T Consensus 208 V~~LnE~GkL~~lL~ 222 (281)
T KOG2824|consen 208 VVRLNEEGKLGKLLK 222 (281)
T ss_pred hhhhhhcchHHHHHh
Confidence 999999999999875
No 45
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.18 E-value=3.7e-10 Score=70.45 Aligned_cols=69 Identities=17% Similarity=0.313 Sum_probs=45.8
Q ss_pred HHHHhhC-CCcEEE-EEeCCChhHHHHHHHHHhcCCC-----CEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCe
Q psy1889 35 FVQDLIA-SEKIVI-FSKSYCPYCKMAKDVFQKLKVT-----PKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGK 105 (127)
Q Consensus 35 ~~~~~~~-~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~-----~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~ 105 (127)
.+.+.++ +.+++| ||++||++|+.+.+.++.+.-. .....++.+ + ..+++.+++.++|++ |.+|+
T Consensus 9 ~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-----~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 9 EWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-----IDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred HHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-----HHHHHHcCCCcCcEEEEEECCE
Confidence 3334443 444444 9999999999999998765222 233444443 2 247788999999998 66888
Q ss_pred EEee
Q psy1889 106 FIGG 109 (127)
Q Consensus 106 ~igg 109 (127)
.++.
T Consensus 83 ~~~~ 86 (102)
T cd02948 83 LVAV 86 (102)
T ss_pred EEEE
Confidence 5433
No 46
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.17 E-value=9.6e-11 Score=74.40 Aligned_cols=68 Identities=21% Similarity=0.443 Sum_probs=50.5
Q ss_pred CcEEE-EEeCCChhHHHHHHHHHhcCCCC---EEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeecHHHHHH
Q psy1889 43 EKIVI-FSKSYCPYCKMAKDVFQKLKVTP---KTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGGTDVKAL 116 (127)
Q Consensus 43 ~~ivv-f~~~~Cp~C~~~~~~l~~~~i~~---~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~~~l~~~ 116 (127)
..++| ||++||++|+.+.+.++++.-.+ ..+.++.+. . .+++++++.++|++ |.+|+.++.......+
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~-----~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK-----A-FLVNYLDIKVLPTLLVYKNGELIDNIVGFEEL 98 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh-----h-HHHHhcCCCcCCEEEEEECCEEEEEEecHHHh
Confidence 45555 99999999999999998765433 334444432 1 58899999999999 7899988777665544
No 47
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.14 E-value=2.4e-10 Score=67.83 Aligned_cols=52 Identities=17% Similarity=0.402 Sum_probs=39.9
Q ss_pred EEeCCChhHHHHHHHH----HhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEE
Q psy1889 48 FSKSYCPYCKMAKDVF----QKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFI 107 (127)
Q Consensus 48 f~~~~Cp~C~~~~~~l----~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~i 107 (127)
|+++|||+|+.+.+.+ ++.+.++..++++.. + .+..+++.++|++++||+.+
T Consensus 5 ~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~-------~-~a~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 5 IYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDM-------N-EILEAGVTATPGVAVDGELV 60 (76)
T ss_pred EECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH-------H-HHHHcCCCcCCEEEECCEEE
Confidence 5679999999996654 556778888888721 1 24568999999999999755
No 48
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.13 E-value=3.4e-10 Score=79.50 Aligned_cols=72 Identities=24% Similarity=0.423 Sum_probs=49.9
Q ss_pred CCChhHHHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhcCCC---CEEEEccCCCCchHHHHHHHHhcCCCcccEEEEC
Q psy1889 27 VMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVT---PKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103 (127)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~---~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~ 103 (127)
..+....+.+....++..|++|+++|||+|+.++++++++... .....++.+.. +++++++++.++|+++++
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~-----~~~~~~~~V~~vPtl~i~ 193 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN-----PDLAEKYGVMSVPKIVIN 193 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC-----HHHHHHhCCccCCEEEEe
Confidence 3445556666654445556669999999999999999886432 22333444332 458889999999999664
No 49
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.12 E-value=2.5e-10 Score=72.30 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=49.6
Q ss_pred CCCcEEE-EEeCC--ChhHHHHHHHHHhcCCCC----EEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeecH
Q psy1889 41 ASEKIVI-FSKSY--CPYCKMAKDVFQKLKVTP----KTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGGT 111 (127)
Q Consensus 41 ~~~~ivv-f~~~~--Cp~C~~~~~~l~~~~i~~----~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~~ 111 (127)
.+.++++ |+++| ||+|+.+.|.|+++.-.| ..+.++.+++ ++++.++++.++||+ |.+|+.++...
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~-----~~la~~f~V~sIPTli~fkdGk~v~~~~ 100 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE-----QALAARFGVLRTPALLFFRDGRYVGVLA 100 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC-----HHHHHHcCCCcCCEEEEEECCEEEEEEe
Confidence 3344444 99997 999999999998875543 3445555543 469999999999999 77999876654
No 50
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.11 E-value=3.7e-10 Score=70.37 Aligned_cols=61 Identities=18% Similarity=0.378 Sum_probs=43.4
Q ss_pred hCCCcEEE-EEeCCChhHHHHHHHHHhcCCC---CEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECC
Q psy1889 40 IASEKIVI-FSKSYCPYCKMAKDVFQKLKVT---PKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNG 104 (127)
Q Consensus 40 ~~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~---~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g 104 (127)
.++..++| ||++||++|+.+.+.++++.-. ...+.++.+.. .+.+.+.+++.++||+ |.+|
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~----~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSI----KPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCC----CHHHHHhcCCeecCEEEEEcCC
Confidence 45555666 9999999999999999886432 33445554411 2468889999999999 4355
No 51
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.11 E-value=9.2e-10 Score=69.72 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=44.7
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcCC-----CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEee
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLKV-----TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGG 109 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i-----~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg 109 (127)
++.+++| ||++||++|+.+.|.+.++.- ......++.+.+ +.+++++++.++|++ |.+|+.+..
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-----~~l~~~~~V~~~Pt~~i~~~g~~~~~ 94 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-----RRLARKLGAHSVPAIVGIINGQVTFY 94 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-----HHHHHHcCCccCCEEEEEECCEEEEE
Confidence 3455555 999999999999988866432 234444444332 357888999999999 568886543
No 52
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.11 E-value=2.1e-10 Score=70.80 Aligned_cols=60 Identities=22% Similarity=0.453 Sum_probs=43.1
Q ss_pred EEEeCCChhHHHHHHHHHhc----CCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeecH
Q psy1889 47 IFSKSYCPYCKMAKDVFQKL----KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGGT 111 (127)
Q Consensus 47 vf~~~~Cp~C~~~~~~l~~~----~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~~ 111 (127)
+|+++||+.|+.+.+.+++. +..+....++.+.. +++.+.+++.++|++ +.+|+.+....
T Consensus 19 ~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~-----~~l~~~~~v~~vPt~~i~~~g~~v~~~~ 84 (97)
T cd02949 19 LYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED-----QEIAEAAGIMGTPTVQFFKDKELVKEIS 84 (97)
T ss_pred EEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC-----HHHHHHCCCeeccEEEEEECCeEEEEEe
Confidence 39999999999999998773 22344445554433 357888999999999 55888665443
No 53
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.10 E-value=3e-10 Score=72.34 Aligned_cols=63 Identities=6% Similarity=0.042 Sum_probs=43.2
Q ss_pred hCCCc-EEE-EEeCCChhHHHHHHHHHhcCCC----CEEEEccCCCCchHHHHHHH-HhcCCCcccEE--EECCeEE
Q psy1889 40 IASEK-IVI-FSKSYCPYCKMAKDVFQKLKVT----PKTVELDHRDDGDSIQDVLL-EITGARSVPRV--FVNGKFI 107 (127)
Q Consensus 40 ~~~~~-ivv-f~~~~Cp~C~~~~~~l~~~~i~----~~~i~i~~~~~~~~~~~~l~-~~~~~~~~P~i--~~~g~~i 107 (127)
....+ ++| |+++||++|+.+.|.+++++-. .....|+-+.+ ..+. +++++.++|++ |.+|+..
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~-----~~l~~~~~~I~~~PTl~lf~~g~~~ 97 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP-----QGKCRKQKHFFYFPVIHLYYRSRGP 97 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC-----hHHHHHhcCCcccCEEEEEECCccc
Confidence 34444 333 9999999999999999886532 33344444332 2355 58899999999 7787743
No 54
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.10 E-value=1.1e-10 Score=72.86 Aligned_cols=63 Identities=21% Similarity=0.372 Sum_probs=40.8
Q ss_pred HHhhCC-CcEEE-EEeCCChhHHHHHHHH-------HhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE
Q psy1889 37 QDLIAS-EKIVI-FSKSYCPYCKMAKDVF-------QKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV 100 (127)
Q Consensus 37 ~~~~~~-~~ivv-f~~~~Cp~C~~~~~~l-------~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i 100 (127)
.++++. .+++| |+++||++|+.+.+.+ +.++-.+..+.++.+.+. .....+.+++++.++|++
T Consensus 5 ~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~~~~~i~~~Pti 76 (104)
T cd02953 5 AQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKND-PEITALLKRFGVFGPPTY 76 (104)
T ss_pred HHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCC-HHHHHHHHHcCCCCCCEE
Confidence 334433 44444 9999999999998765 122224555555543322 224678889999999999
No 55
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.10 E-value=1.3e-09 Score=64.64 Aligned_cols=72 Identities=18% Similarity=0.321 Sum_probs=59.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE--CCeEEeecHHHHHHHHc
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV--NGKFIGGGTDVKALYEK 119 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~--~g~~igg~~~l~~~~~~ 119 (127)
+.+|+.++||+|++++-.|++++++|+.++++... ...+++.+.++..++|++.. +|..+.++..+..++++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~---~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~ 75 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGS---PKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFK 75 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCCh---HHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHH
Confidence 57899999999999999999999999999886432 23456777778899999976 36788999888887764
No 56
>PTZ00051 thioredoxin; Provisional
Probab=99.08 E-value=7.4e-10 Score=68.13 Aligned_cols=72 Identities=17% Similarity=0.339 Sum_probs=49.0
Q ss_pred HHHHHhhCCCc-EEE-EEeCCChhHHHHHHHHHhcCC---CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeE
Q psy1889 34 QFVQDLIASEK-IVI-FSKSYCPYCKMAKDVFQKLKV---TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKF 106 (127)
Q Consensus 34 ~~~~~~~~~~~-ivv-f~~~~Cp~C~~~~~~l~~~~i---~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~ 106 (127)
+.+.+.++..+ +++ ||++||++|+.+.+.+.++.. .+..+.++.+. ...+.+.+++.++|++ +.+|+.
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~-----~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE-----LSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc-----hHHHHHHCCCceeeEEEEEeCCeE
Confidence 33444554444 444 999999999999998877532 23344444433 2458888999999999 668887
Q ss_pred Eeec
Q psy1889 107 IGGG 110 (127)
Q Consensus 107 igg~ 110 (127)
++..
T Consensus 84 ~~~~ 87 (98)
T PTZ00051 84 VDTL 87 (98)
T ss_pred EEEE
Confidence 6555
No 57
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.2e-10 Score=81.53 Aligned_cols=67 Identities=21% Similarity=0.413 Sum_probs=52.2
Q ss_pred hCCCcEEE-EEeCCChhHHHHHHHHHhcCC----CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeecH
Q psy1889 40 IASEKIVI-FSKSYCPYCKMAKDVFQKLKV----TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGGT 111 (127)
Q Consensus 40 ~~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i----~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~~ 111 (127)
....+|+| ||+|||++|+...|.|+++.. .|....++.|.+ +.++..+|+.++|++ |++|+.|.||.
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~-----p~vAaqfgiqsIPtV~af~dGqpVdgF~ 114 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE-----PMVAAQFGVQSIPTVYAFKDGQPVDGFQ 114 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc-----hhHHHHhCcCcCCeEEEeeCCcCccccC
Confidence 34456777 999999999999999988643 455555555443 458999999999999 88999888775
No 58
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.07 E-value=1.5e-09 Score=66.59 Aligned_cols=61 Identities=16% Similarity=0.283 Sum_probs=45.0
Q ss_pred CcEEE-EEeCCChhHHHHHHHHHhcCC----CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEe
Q psy1889 43 EKIVI-FSKSYCPYCKMAKDVFQKLKV----TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIG 108 (127)
Q Consensus 43 ~~ivv-f~~~~Cp~C~~~~~~l~~~~i----~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~ig 108 (127)
.+++| ||++||++|+.+.+.++++.- .+....++.+.. +.+.+++++.++|++ |.+|+.+.
T Consensus 13 ~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 13 VPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ-----PQIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-----HHHHHHcCCCCCCEEEEEeCCEEee
Confidence 34555 999999999999999977542 344455555543 458889999999999 56787654
No 59
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.06 E-value=9.7e-10 Score=67.43 Aligned_cols=63 Identities=21% Similarity=0.355 Sum_probs=45.9
Q ss_pred CcEEE-EEeCCChhHHHHHHHHHhcCC----CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeec
Q psy1889 43 EKIVI-FSKSYCPYCKMAKDVFQKLKV----TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGG 110 (127)
Q Consensus 43 ~~ivv-f~~~~Cp~C~~~~~~l~~~~i----~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~ 110 (127)
..+++ |+++||++|+.+.+.|+++.. .+..+.++.+.. .++.+.+++.++|++ |.+|+.++..
T Consensus 15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g~~~~~~ 84 (97)
T cd02984 15 KLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL-----PEISEKFEITAVPTFVFFRNGTIVDRV 84 (97)
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC-----HHHHHhcCCccccEEEEEECCEEEEEE
Confidence 44444 999999999999999977432 345555655432 458888999999999 6688865443
No 60
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.06 E-value=6.4e-10 Score=73.35 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=44.7
Q ss_pred CCcEEE-EEeCCChhHHHHHHHHHhcCCC----CEEEEccCCCCchHHHHHHHHhcCCCccc-EE--EECCe-EEee
Q psy1889 42 SEKIVI-FSKSYCPYCKMAKDVFQKLKVT----PKTVELDHRDDGDSIQDVLLEITGARSVP-RV--FVNGK-FIGG 109 (127)
Q Consensus 42 ~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~----~~~i~i~~~~~~~~~~~~l~~~~~~~~~P-~i--~~~g~-~igg 109 (127)
+..++| |+++|||+|+.+.|.|+++.-. ...+.||.|+. +++++.+++.+.| ++ |.+|+ .+..
T Consensus 23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~-----~dla~~y~I~~~~t~~~ffk~g~~~vd~ 94 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV-----PDFNTMYELYDPCTVMFFFRNKHIMIDL 94 (142)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC-----HHHHHHcCccCCCcEEEEEECCeEEEEE
Confidence 445555 9999999999999999887633 33456666553 4699999998565 44 55777 4433
No 61
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.06 E-value=2.1e-09 Score=61.21 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=58.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
.+|+.++||+|++++.+|+..+++|+.+.++....... ++.+.++..++|++..+|..++++..+.+++
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl 70 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLTESLAILEYL 70 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 57899999999999999999999999999887654322 4667778999999999999999888777653
No 62
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.06 E-value=1.6e-09 Score=72.39 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=45.9
Q ss_pred cEEE-EEeCCChhHHHHHHHHHhcCC-----CCEEEEccCCCCchHHHHHHHHhcCCCc------ccEE--EECCeEEee
Q psy1889 44 KIVI-FSKSYCPYCKMAKDVFQKLKV-----TPKTVELDHRDDGDSIQDVLLEITGARS------VPRV--FVNGKFIGG 109 (127)
Q Consensus 44 ~ivv-f~~~~Cp~C~~~~~~l~~~~i-----~~~~i~i~~~~~~~~~~~~l~~~~~~~~------~P~i--~~~g~~igg 109 (127)
.++| ||++|||+|+.+.|.++++.. ++....++.++. +.+++.+++.+ +||+ |.+|+.++.
T Consensus 49 ~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-----~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 49 TWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-----PNVAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-----HHHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 3444 999999999999999977542 244455555443 35778888877 9999 789997765
Q ss_pred cH
Q psy1889 110 GT 111 (127)
Q Consensus 110 ~~ 111 (127)
..
T Consensus 124 ~~ 125 (152)
T cd02962 124 RP 125 (152)
T ss_pred Ee
Confidence 54
No 63
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.04 E-value=9.4e-10 Score=68.25 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=42.6
Q ss_pred CcEEE-EEeCCChhHHHHHHHHHhcCCC----CEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEE
Q psy1889 43 EKIVI-FSKSYCPYCKMAKDVFQKLKVT----PKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFI 107 (127)
Q Consensus 43 ~~ivv-f~~~~Cp~C~~~~~~l~~~~i~----~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~i 107 (127)
..++| ||++||++|+.+.+.++++... +....++.+.. +.+.+++++.++|++ |.+|+.+
T Consensus 19 ~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~~ 85 (101)
T cd03003 19 EIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD-----RMLCRSQGVNSYPSLYVFPSGMNP 85 (101)
T ss_pred CeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc-----HHHHHHcCCCccCEEEEEcCCCCc
Confidence 33444 9999999999999999776432 33344444432 357888999999999 6677644
No 64
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.03 E-value=7.3e-10 Score=75.65 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=48.8
Q ss_pred cEEE-EEeCCChhHHHHHHHHHhcCCCC---EEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeecHHHHH
Q psy1889 44 KIVI-FSKSYCPYCKMAKDVFQKLKVTP---KTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGGTDVKA 115 (127)
Q Consensus 44 ~ivv-f~~~~Cp~C~~~~~~l~~~~i~~---~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~~~l~~ 115 (127)
.++| ||++||++|+.+.+.|+++.-.| ..+.|+.+.. .+...+++.++|++ |.+|+.++....+..
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~------~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~ 156 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT------GASDEFDTDALPALLVYKGGELIGNFVRVTE 156 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch------hhHHhCCCCCCCEEEEEECCEEEEEEechHH
Confidence 5555 99999999999999998875433 3444544321 58888999999999 779998766554443
No 65
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.03 E-value=1.8e-09 Score=66.82 Aligned_cols=65 Identities=14% Similarity=0.270 Sum_probs=45.0
Q ss_pred HHHhhCCCcEEEEEeCCChhHHHHHHHHHhcCC-----CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCe
Q psy1889 36 VQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKV-----TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGK 105 (127)
Q Consensus 36 ~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i-----~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~ 105 (127)
+.+.+++..++.||++|||+|+.+.|.++++.. .+....++.+.. +.+.+++++.++|++ +.+|+
T Consensus 11 f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 11 WTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-----PGLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred HHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-----HhHHHHcCCcccCEEEEeCCCC
Confidence 344555655555999999999999999977532 233344444332 347888999999999 44665
No 66
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.03 E-value=5.8e-09 Score=64.23 Aligned_cols=64 Identities=33% Similarity=0.579 Sum_probs=47.7
Q ss_pred CCcEEE-EEeCCChhHHHHHHHHHhc----CCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeec
Q psy1889 42 SEKIVI-FSKSYCPYCKMAKDVFQKL----KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGG 110 (127)
Q Consensus 42 ~~~ivv-f~~~~Cp~C~~~~~~l~~~----~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~ 110 (127)
+.+++| |+++||++|+.+.+.++++ ..++....++.+.. +.+.+++++.++|++ +.+|+.+..+
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~v~~~Pt~~~~~~g~~~~~~ 87 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-----KELCKKYGVKSVPTIIFFKNGKEVKRY 87 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-----HHHHHHTTCSSSSEEEEEETTEEEEEE
T ss_pred CCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc-----chhhhccCCCCCCEEEEEECCcEEEEE
Confidence 345555 9999999999999999774 22566666665543 458899999999999 6688866433
No 67
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.03 E-value=4.4e-09 Score=62.11 Aligned_cols=70 Identities=16% Similarity=0.361 Sum_probs=56.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEEC----CeEEeecHHHHHHHHc
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN----GKFIGGGTDVKALYEK 119 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~----g~~igg~~~l~~~~~~ 119 (127)
++.+|+.++||+|++++.+|.+.+++|+.++++... ..++ +..+..++|++..+ |..+.++..+.++++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-----~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~ 74 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-----RKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKT 74 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-----HHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHH
Confidence 478899999999999999999999999999886432 2234 34578899999876 7788888888877653
No 68
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.02 E-value=1.6e-09 Score=68.08 Aligned_cols=63 Identities=17% Similarity=0.424 Sum_probs=43.6
Q ss_pred HhhCCCc-EEE-EEeCCChhHHHHHHHHHhcCC----------CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EEC
Q psy1889 38 DLIASEK-IVI-FSKSYCPYCKMAKDVFQKLKV----------TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVN 103 (127)
Q Consensus 38 ~~~~~~~-ivv-f~~~~Cp~C~~~~~~l~~~~i----------~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~ 103 (127)
+.++..+ ++| |+++||++|+.+.+.+++..- .+....++.+.+ +.+.+++++.++|++ |.+
T Consensus 13 ~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-----~~l~~~~~v~~~Ptl~~~~~ 87 (108)
T cd02996 13 DILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-----SDIADRYRINKYPTLKLFRN 87 (108)
T ss_pred HHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----HHHHHhCCCCcCCEEEEEeC
Confidence 3444444 343 999999999999999975421 233444554443 458899999999999 667
Q ss_pred Ce
Q psy1889 104 GK 105 (127)
Q Consensus 104 g~ 105 (127)
|+
T Consensus 88 g~ 89 (108)
T cd02996 88 GM 89 (108)
T ss_pred Cc
Confidence 77
No 69
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.02 E-value=3.7e-09 Score=61.50 Aligned_cols=68 Identities=21% Similarity=0.481 Sum_probs=55.3
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEEC-CeEEeecHHHHHHHH
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN-GKFIGGGTDVKALYE 118 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~-g~~igg~~~l~~~~~ 118 (127)
.+|+.++||+|++++-.|...+++|+.+.++.... . ...+..+..++|++..+ |..++++..+.++++
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~--~---~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDE--A---TPIRMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCch--H---HHHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 47899999999999999999999999988875432 1 12345677889999886 889999999888765
No 70
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.01 E-value=1.1e-09 Score=85.91 Aligned_cols=93 Identities=18% Similarity=0.269 Sum_probs=68.2
Q ss_pred hHHHHHHH---cCCCCCCChhHHHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHH
Q psy1889 14 KTSFLETL---GASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLE 90 (127)
Q Consensus 14 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~ 90 (127)
+.+|+.++ +......+.++.+.++++.++..+.+|.+++||+|..+++.++++......+..+..+. ...+++++
T Consensus 86 f~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~--~~~~~~~~ 163 (517)
T PRK15317 86 FTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG--ALFQDEVE 163 (517)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc--hhCHhHHH
Confidence 45666664 34445677888888888878888999999999999999999988766433333333211 22466888
Q ss_pred hcCCCcccEEEECCeEEe
Q psy1889 91 ITGARSVPRVFVNGKFIG 108 (127)
Q Consensus 91 ~~~~~~~P~i~~~g~~ig 108 (127)
+|++.++|++|+||+.+.
T Consensus 164 ~~~v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 164 ARNIMAVPTVFLNGEEFG 181 (517)
T ss_pred hcCCcccCEEEECCcEEE
Confidence 999999999999987543
No 71
>PRK09381 trxA thioredoxin; Provisional
Probab=99.00 E-value=3.6e-09 Score=66.44 Aligned_cols=64 Identities=20% Similarity=0.411 Sum_probs=45.0
Q ss_pred CCcEEE-EEeCCChhHHHHHHHHHhcC----CCCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeec
Q psy1889 42 SEKIVI-FSKSYCPYCKMAKDVFQKLK----VTPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGG 110 (127)
Q Consensus 42 ~~~ivv-f~~~~Cp~C~~~~~~l~~~~----i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~ 110 (127)
+.++++ ||++|||+|+.+.+.++++. -.+....++.+.. +.+.+++++.++|++ |.+|+.++.+
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~G~~~~~~ 91 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN-----PGTAPKYGIRGIPTLLLFKNGEVAATK 91 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC-----hhHHHhCCCCcCCEEEEEeCCeEEEEe
Confidence 444555 99999999999999887643 2344444444432 247788999999999 5588876543
No 72
>PRK10996 thioredoxin 2; Provisional
Probab=99.00 E-value=6.9e-09 Score=68.28 Aligned_cols=72 Identities=21% Similarity=0.403 Sum_probs=49.9
Q ss_pred HHHHHhhCC-CcEEE-EEeCCChhHHHHHHHHHhcC----CCCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCe
Q psy1889 34 QFVQDLIAS-EKIVI-FSKSYCPYCKMAKDVFQKLK----VTPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGK 105 (127)
Q Consensus 34 ~~~~~~~~~-~~ivv-f~~~~Cp~C~~~~~~l~~~~----i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~ 105 (127)
..+.+.++. ..++| ||++||++|+.+.+.|++.. -.+..+.++.+.. +.+.+.+++.++|++ |.+|+
T Consensus 43 ~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-----~~l~~~~~V~~~Ptlii~~~G~ 117 (139)
T PRK10996 43 ETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-----RELSARFRIRSIPTIMIFKNGQ 117 (139)
T ss_pred HHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-----HHHHHhcCCCccCEEEEEECCE
Confidence 344444443 44444 99999999999998887743 3455556665543 458889999999999 66888
Q ss_pred EEeec
Q psy1889 106 FIGGG 110 (127)
Q Consensus 106 ~igg~ 110 (127)
.+...
T Consensus 118 ~v~~~ 122 (139)
T PRK10996 118 VVDML 122 (139)
T ss_pred EEEEE
Confidence 66443
No 73
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.99 E-value=6.2e-09 Score=60.63 Aligned_cols=67 Identities=19% Similarity=0.368 Sum_probs=55.6
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEEC-CeEEeecHHHHHH
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN-GKFIGGGTDVKAL 116 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~-g~~igg~~~l~~~ 116 (127)
++|+.++||+|++++-.|++++++|+.++++.... .+++.+.++..++|++..+ |..+..+..+..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~----~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNK----PAEMLAASPKGTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCC----CHHHHHHCCCCCCCEEEECCCcEEecHHHHHHh
Confidence 67999999999999999999999999998886432 2457777889999999885 8888877766654
No 74
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.99 E-value=2.2e-09 Score=66.77 Aligned_cols=56 Identities=16% Similarity=0.334 Sum_probs=40.5
Q ss_pred cEEE-EEeCCChhHHHHHHHHHhcCCC----CEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECC
Q psy1889 44 KIVI-FSKSYCPYCKMAKDVFQKLKVT----PKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNG 104 (127)
Q Consensus 44 ~ivv-f~~~~Cp~C~~~~~~l~~~~i~----~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g 104 (127)
.++| ||++||++|+.+.+.++++... +....++-+. .+.+.+.+++.++|++ |.+|
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-----~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK-----YESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc-----hHHHHHHcCCCcccEEEEEcCC
Confidence 4444 9999999999999999775432 3344444433 2458888999999999 5566
No 75
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.99 E-value=2.3e-09 Score=66.19 Aligned_cols=68 Identities=21% Similarity=0.371 Sum_probs=45.9
Q ss_pred HHHhhCCCcEEE-EEeCCChhHHHHHHHHHhcCC-------CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCe
Q psy1889 36 VQDLIASEKIVI-FSKSYCPYCKMAKDVFQKLKV-------TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGK 105 (127)
Q Consensus 36 ~~~~~~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i-------~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~ 105 (127)
+...+.+.++++ ||++||++|+...+.++++.. .+....++.+.. ..+.+.+++.++|++ |.+|+
T Consensus 10 f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 10 FDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-----RELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred HHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-----hhhHhhcCCCcCCEEEEEeCCC
Confidence 334444445555 999999999999998866422 344455554432 347788999999998 55777
Q ss_pred EEe
Q psy1889 106 FIG 108 (127)
Q Consensus 106 ~ig 108 (127)
.+.
T Consensus 85 ~~~ 87 (102)
T cd03005 85 KVD 87 (102)
T ss_pred eee
Confidence 554
No 76
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.98 E-value=1.5e-09 Score=85.01 Aligned_cols=93 Identities=16% Similarity=0.273 Sum_probs=67.9
Q ss_pred hHHHHHHH---cCCCCCCChhHHHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHH
Q psy1889 14 KTSFLETL---GASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLE 90 (127)
Q Consensus 14 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~ 90 (127)
+.+|+.++ +......+.++.+.++++-++..+.+|.+++||+|..++..++++......+..+..+. ...+++++
T Consensus 87 f~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~--~~~~~~~~ 164 (515)
T TIGR03140 87 FTSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDG--ALFQDEVE 164 (515)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEc--hhCHHHHH
Confidence 34566663 33344567777888888877788999999999999999999998876443333333222 23466889
Q ss_pred hcCCCcccEEEECCeEEe
Q psy1889 91 ITGARSVPRVFVNGKFIG 108 (127)
Q Consensus 91 ~~~~~~~P~i~~~g~~ig 108 (127)
++++.++|++|+||+.+.
T Consensus 165 ~~~v~~VP~~~i~~~~~~ 182 (515)
T TIGR03140 165 ALGIQGVPAVFLNGEEFH 182 (515)
T ss_pred hcCCcccCEEEECCcEEE
Confidence 999999999999987554
No 77
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=98.98 E-value=3.7e-09 Score=65.65 Aligned_cols=81 Identities=17% Similarity=0.291 Sum_probs=59.1
Q ss_pred cEEEEEeCCChh------HHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcC---------CCcccEEEECCeEEe
Q psy1889 44 KIVIFSKSYCPY------CKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG---------ARSVPRVFVNGKFIG 108 (127)
Q Consensus 44 ~ivvf~~~~Cp~------C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~---------~~~~P~i~~~g~~ig 108 (127)
.|.||+++.-+. |.++..+|+..+|+|+.+||..++ +.++.+.+..+ ..-.|+||.+++++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e---~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDE---EARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-H---HHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCH---HHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 467787655443 557888999999999999999865 55666776652 345589999999999
Q ss_pred ecHHHHHHHHcCCcccccC
Q psy1889 109 GGTDVKALYEKGELHPLVQ 127 (127)
Q Consensus 109 g~~~l~~~~~~~~L~~~L~ 127 (127)
+++++..+.+++.|.++|+
T Consensus 79 dye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 79 DYEDFEEANENGELEEFLK 97 (99)
T ss_dssp EHHHHHHHHCTT-HHHHHT
T ss_pred eHHHHHHHHhhCHHHHHhC
Confidence 9999999999999999885
No 78
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.97 E-value=5e-09 Score=69.21 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=43.7
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcC----CCCEEEEccCCCCchHHHHHHHHhcCCCcccEE-EE--CCeEEe
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLK----VTPKTVELDHRDDGDSIQDVLLEITGARSVPRV-FV--NGKFIG 108 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~----i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i-~~--~g~~ig 108 (127)
++.+++| ||++||++|+.+.+.+.++. ..+..+.++.+... ...+.+.+++.++|++ ++ +|+.++
T Consensus 19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~---~~~~~~~~~V~~iPt~v~~~~~G~~v~ 91 (142)
T cd02950 19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK---WLPEIDRYRVDGIPHFVFLDREGNEEG 91 (142)
T ss_pred CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc---cHHHHHHcCCCCCCEEEEECCCCCEEE
Confidence 4445555 99999999999999987653 23344444443321 2357788999999999 44 476553
No 79
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.96 E-value=1.2e-09 Score=69.93 Aligned_cols=71 Identities=18% Similarity=0.369 Sum_probs=45.3
Q ss_pred HHHHHHhh-CCCcEEE-EEeCCChhHHHHHHHHHhc------CCCCEEEEccCCCCchHHHHHHHHhcCCC--cccEE-E
Q psy1889 33 KQFVQDLI-ASEKIVI-FSKSYCPYCKMAKDVFQKL------KVTPKTVELDHRDDGDSIQDVLLEITGAR--SVPRV-F 101 (127)
Q Consensus 33 ~~~~~~~~-~~~~ivv-f~~~~Cp~C~~~~~~l~~~------~i~~~~i~i~~~~~~~~~~~~l~~~~~~~--~~P~i-~ 101 (127)
.+.++.+. ++.+++| |+++||++|+.+.+.+.+. ..+|..++++.++. . ....+++. ++|++ |
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~----~~~~~~~~g~~vPt~~f 82 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--P----KDEEFSPDGGYIPRILF 82 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--c----hhhhcccCCCccceEEE
Confidence 33444443 3455666 9999999999999988763 23566677776542 1 23345554 49999 4
Q ss_pred E--CCeEEee
Q psy1889 102 V--NGKFIGG 109 (127)
Q Consensus 102 ~--~g~~igg 109 (127)
. +|+.++.
T Consensus 83 ~~~~Gk~~~~ 92 (117)
T cd02959 83 LDPSGDVHPE 92 (117)
T ss_pred ECCCCCCchh
Confidence 4 5776553
No 80
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.96 E-value=3.4e-09 Score=74.45 Aligned_cols=68 Identities=26% Similarity=0.489 Sum_probs=49.4
Q ss_pred HHHhhCCCcEEEEEe---CCChhHHHHHHHHHhcCC-----CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCe
Q psy1889 36 VQDLIASEKIVIFSK---SYCPYCKMAKDVFQKLKV-----TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGK 105 (127)
Q Consensus 36 ~~~~~~~~~ivvf~~---~~Cp~C~~~~~~l~~~~i-----~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~ 105 (127)
+..+.++..+++|++ +|||+|+.+.++++++.- .+..++++.+.. +++++++++.++|++ |.+|+
T Consensus 14 ~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-----~~l~~~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 14 LKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-----KEEAEKYGVERVPTTIILEEGK 88 (215)
T ss_pred HHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-----HHHHHHcCCCccCEEEEEeCCe
Confidence 333444556777888 999999999999988743 233566665443 569999999999999 45776
Q ss_pred EEe
Q psy1889 106 FIG 108 (127)
Q Consensus 106 ~ig 108 (127)
.++
T Consensus 89 ~~~ 91 (215)
T TIGR02187 89 DGG 91 (215)
T ss_pred eeE
Confidence 543
No 81
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.95 E-value=1.1e-08 Score=59.52 Aligned_cols=70 Identities=13% Similarity=0.197 Sum_probs=58.5
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
++|+.++||+|++++..|+..|++|+.+.++.... .+++.+.++..++|++..+|..+.++..+..++++
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~----~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 71 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNP----PEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDE 71 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCC----CHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHh
Confidence 57999999999999999999999999988876432 24566667888999998899999888888887654
No 82
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.95 E-value=1.6e-09 Score=67.69 Aligned_cols=60 Identities=18% Similarity=0.393 Sum_probs=40.8
Q ss_pred HHHhhCCCcEEE-EEeCCChhHHHHHHHHHhcCC-------CCEEEEccCCCCchHHHHHHHHhcCCCcccEE
Q psy1889 36 VQDLIASEKIVI-FSKSYCPYCKMAKDVFQKLKV-------TPKTVELDHRDDGDSIQDVLLEITGARSVPRV 100 (127)
Q Consensus 36 ~~~~~~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i-------~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i 100 (127)
+.+..++..++| ||++|||+|+...+.++++.. .+....++.+. .+.+.+++++.++|++
T Consensus 9 ~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~-----~~~~~~~~~I~~~Pt~ 76 (104)
T cd03000 9 FKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA-----YSSIASEFGVRGYPTI 76 (104)
T ss_pred hhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc-----CHhHHhhcCCccccEE
Confidence 334445555555 999999999999998876432 23333334332 2357888999999999
No 83
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.95 E-value=4.3e-09 Score=67.57 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=43.9
Q ss_pred CCcEEE-EEe-------CCChhHHHHHHHHHhcC----CCCEEEEccCCCCc--hHHHHHHHHhcCCC-cccEE--EECC
Q psy1889 42 SEKIVI-FSK-------SYCPYCKMAKDVFQKLK----VTPKTVELDHRDDG--DSIQDVLLEITGAR-SVPRV--FVNG 104 (127)
Q Consensus 42 ~~~ivv-f~~-------~~Cp~C~~~~~~l~~~~----i~~~~i~i~~~~~~--~~~~~~l~~~~~~~-~~P~i--~~~g 104 (127)
+.+++| |++ +|||+|+.+.|.++++. ..+..+.|+.++.. .+....++..+++. ++|++ |.+|
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~ 100 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTP 100 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCC
Confidence 445555 999 99999999999887742 23444444443210 01124688888998 99999 4455
Q ss_pred eEEeec
Q psy1889 105 KFIGGG 110 (127)
Q Consensus 105 ~~igg~ 110 (127)
+.+-+.
T Consensus 101 ~~l~~~ 106 (119)
T cd02952 101 QRLVED 106 (119)
T ss_pred ceecch
Confidence 544443
No 84
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.95 E-value=4.7e-09 Score=67.54 Aligned_cols=69 Identities=22% Similarity=0.398 Sum_probs=42.2
Q ss_pred HHHHhhCCC--cEEE-EEeCCChhHHHHHHHHHh-------cCCCCEEEEccCCCCch--------HHHHHHHHhcCCCc
Q psy1889 35 FVQDLIASE--KIVI-FSKSYCPYCKMAKDVFQK-------LKVTPKTVELDHRDDGD--------SIQDVLLEITGARS 96 (127)
Q Consensus 35 ~~~~~~~~~--~ivv-f~~~~Cp~C~~~~~~l~~-------~~i~~~~i~i~~~~~~~--------~~~~~l~~~~~~~~ 96 (127)
.+.++.+.. +++| |+++||++|+++.+.+.+ +.-.+..+.++.+.+.. .....+...+++.+
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 344444444 4555 999999999999876531 22245555554433210 01356888999999
Q ss_pred ccEE-EEC
Q psy1889 97 VPRV-FVN 103 (127)
Q Consensus 97 ~P~i-~~~ 103 (127)
+|++ |++
T Consensus 85 ~Pt~~~~~ 92 (125)
T cd02951 85 TPTVIFLD 92 (125)
T ss_pred ccEEEEEc
Confidence 9998 444
No 85
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.94 E-value=2.1e-09 Score=84.90 Aligned_cols=85 Identities=19% Similarity=0.280 Sum_probs=65.1
Q ss_pred hHHHHHHH---cCCCCCCChhHHHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhcC-----CCCEEEEccCCCCchHHH
Q psy1889 14 KTSFLETL---GASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLK-----VTPKTVELDHRDDGDSIQ 85 (127)
Q Consensus 14 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~~~~~~~~ 85 (127)
+.+|+.++ +......+.++.+.++++-++..|.+|.+++||+|..+...++++. +..+.+++...
T Consensus 446 f~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~------- 518 (555)
T TIGR03143 446 LNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF------- 518 (555)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc-------
Confidence 45666663 3334456788888888887777888999999999999998887753 45555665543
Q ss_pred HHHHHhcCCCcccEEEECCe
Q psy1889 86 DVLLEITGARSVPRVFVNGK 105 (127)
Q Consensus 86 ~~l~~~~~~~~~P~i~~~g~ 105 (127)
++++++|+++++|++++||+
T Consensus 519 ~~~~~~~~v~~vP~~~i~~~ 538 (555)
T TIGR03143 519 PDLKDEYGIMSVPAIVVDDQ 538 (555)
T ss_pred HHHHHhCCceecCEEEECCE
Confidence 46888999999999999997
No 86
>KOG0908|consensus
Probab=98.91 E-value=3.3e-09 Score=75.18 Aligned_cols=71 Identities=27% Similarity=0.447 Sum_probs=50.8
Q ss_pred HHHHHHhhCCC--cEEE-EEeCCChhHHHHHHHHHhcCCCCE-----EEEccCCCCchHHHHHHHHhcCCCcccEE--EE
Q psy1889 33 KQFVQDLIASE--KIVI-FSKSYCPYCKMAKDVFQKLKVTPK-----TVELDHRDDGDSIQDVLLEITGARSVPRV--FV 102 (127)
Q Consensus 33 ~~~~~~~~~~~--~ivv-f~~~~Cp~C~~~~~~l~~~~i~~~-----~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~ 102 (127)
..+.+++.... -++| |+++||++|+++.|+++.+.-.|. .+||++.. ..+..+|+..+||+ |.
T Consensus 10 ~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~-------~taa~~gV~amPTFiff~ 82 (288)
T KOG0908|consen 10 SDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECR-------GTAATNGVNAMPTFIFFR 82 (288)
T ss_pred HHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhh-------chhhhcCcccCceEEEEe
Confidence 34444444332 3455 999999999999999999877654 44555433 37778899999999 88
Q ss_pred CCeEEeec
Q psy1889 103 NGKFIGGG 110 (127)
Q Consensus 103 ~g~~igg~ 110 (127)
+|..|...
T Consensus 83 ng~kid~~ 90 (288)
T KOG0908|consen 83 NGVKIDQI 90 (288)
T ss_pred cCeEeeee
Confidence 99866433
No 87
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.90 E-value=1.6e-08 Score=59.06 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=59.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHH
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYE 118 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~ 118 (127)
.+|+.++||+|++++-.|++.+++|+.+.++.... +...+++.+.+....+|++..+|..+.....+..++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKG-EHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLV 73 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccC-CcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 57999999999999999999999999988875332 2234567778888999999989988888888777654
No 88
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.89 E-value=7.3e-09 Score=66.64 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=42.5
Q ss_pred HhhCCCc-EEE-EEeCCChh--HH--HHHHHHHhc------CCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EEC
Q psy1889 38 DLIASEK-IVI-FSKSYCPY--CK--MAKDVFQKL------KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVN 103 (127)
Q Consensus 38 ~~~~~~~-ivv-f~~~~Cp~--C~--~~~~~l~~~------~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~ 103 (127)
...++.. +++ |+++||++ |+ ...|.+.+. ...+....++.+.+ +.++++++++++||+ |.+
T Consensus 22 ~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~-----~~La~~~~I~~iPTl~lfk~ 96 (120)
T cd03065 22 VLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD-----AKVAKKLGLDEEDSIYVFKD 96 (120)
T ss_pred HHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC-----HHHHHHcCCccccEEEEEEC
Confidence 3444433 333 88888876 99 666555442 22334444444433 459999999999999 889
Q ss_pred CeEEe
Q psy1889 104 GKFIG 108 (127)
Q Consensus 104 g~~ig 108 (127)
|+.+.
T Consensus 97 G~~v~ 101 (120)
T cd03065 97 DEVIE 101 (120)
T ss_pred CEEEE
Confidence 98664
No 89
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.87 E-value=4.9e-09 Score=72.57 Aligned_cols=78 Identities=14% Similarity=0.293 Sum_probs=53.0
Q ss_pred hhHHHHHHHhhCC---CcEEE-EEeCCChhHHHHHHHHHhcCCCC---EEEEccCCCCchHHHHHHHHhcCCCcccEE--
Q psy1889 30 PASKQFVQDLIAS---EKIVI-FSKSYCPYCKMAKDVFQKLKVTP---KTVELDHRDDGDSIQDVLLEITGARSVPRV-- 100 (127)
Q Consensus 30 ~~~~~~~~~~~~~---~~ivv-f~~~~Cp~C~~~~~~l~~~~i~~---~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i-- 100 (127)
.+..++....... ..|+| ||++||++|+.+.+.|+++...| ..+.|+.+. ....+++..+|++
T Consensus 87 is~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~--------~~~~~~i~~lPTlli 158 (192)
T cd02988 87 ISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ--------CIPNYPDKNLPTILV 158 (192)
T ss_pred eCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH--------hHhhCCCCCCCEEEE
Confidence 3344555555433 24666 99999999999999998876433 344444321 2467899999999
Q ss_pred EECCeEEeecHHHHH
Q psy1889 101 FVNGKFIGGGTDVKA 115 (127)
Q Consensus 101 ~~~g~~igg~~~l~~ 115 (127)
|.+|+.++.+..+..
T Consensus 159 yk~G~~v~~ivG~~~ 173 (192)
T cd02988 159 YRNGDIVKQFIGLLE 173 (192)
T ss_pred EECCEEEEEEeCchh
Confidence 789997766554443
No 90
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.87 E-value=1.4e-08 Score=59.02 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=55.5
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE-CCeEEeecHHHHHHH
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV-NGKFIGGGTDVKALY 117 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~-~g~~igg~~~l~~~~ 117 (127)
.+|+.++||+|++++-+|+..+++|+.+.++.... ....+++.+.++..++|++.. +|..+.++..+..++
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yL 73 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAG-EQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYL 73 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccC-ccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHh
Confidence 57999999999999999999999999888775332 112345777778899999986 677787777766653
No 91
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.86 E-value=4.2e-08 Score=59.73 Aligned_cols=73 Identities=21% Similarity=0.403 Sum_probs=60.1
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEEC-CeEEeecHHHHHHH
Q psy1889 41 ASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN-GKFIGGGTDVKALY 117 (127)
Q Consensus 41 ~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~-g~~igg~~~l~~~~ 117 (127)
....+.+|+.+.||+|++++-+|...+++|+.++++.... .+++.+.++..++|++..+ |..+.....+..++
T Consensus 15 ~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~----~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yL 88 (89)
T cd03055 15 VPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDK----PDWFLEKNPQGKVPALEIDEGKVVYESLIICEYL 88 (89)
T ss_pred CCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCC----cHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhh
Confidence 3556899999999999999999999999999998876432 2446677788999999987 88888887777664
No 92
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.84 E-value=2e-08 Score=62.07 Aligned_cols=62 Identities=27% Similarity=0.473 Sum_probs=40.7
Q ss_pred cEEE-EEeCCChhHHHHHHHHHhcC------CCCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEe
Q psy1889 44 KIVI-FSKSYCPYCKMAKDVFQKLK------VTPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIG 108 (127)
Q Consensus 44 ~ivv-f~~~~Cp~C~~~~~~l~~~~------i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~ig 108 (127)
.++| |+++||++|+.+.+.+.+.. ..+....++.+.+ ....+.+++++.++|++ |.+|+.+.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 89 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP---EHDALKEEYNVKGFPTFKYFENGKFVE 89 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC---ccHHHHHhCCCccccEEEEEeCCCeeE
Confidence 4444 99999999999988876542 1233333333321 12457788899999999 55777543
No 93
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.82 E-value=3.7e-08 Score=57.97 Aligned_cols=69 Identities=13% Similarity=0.303 Sum_probs=60.2
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 47 IFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 47 vf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
+|+.++||+|++++-+|+..+++|+.+.++.... .+++.+.++..++|++..+|..+.++..+..++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~----~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~ 69 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEK----RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEE 69 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTST----SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccc----hhHHHhhcccccceEEEECCEEEeCHHHHHHHHHH
Confidence 5889999999999999999999999999886543 35577778899999999999999999999888764
No 94
>PTZ00062 glutaredoxin; Provisional
Probab=98.81 E-value=1.8e-08 Score=70.34 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=46.6
Q ss_pred HHHHHhhC--CCcEEE-EEeCCChhHHHHHHHHHhcCCCC---EEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCe
Q psy1889 34 QFVQDLIA--SEKIVI-FSKSYCPYCKMAKDVFQKLKVTP---KTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGK 105 (127)
Q Consensus 34 ~~~~~~~~--~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~~---~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~ 105 (127)
+.+.+.++ ...+++ |+++|||+|+.+.++|.++.-.| ..+.|+.+ +++.++|++ |.+|+
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------~~V~~vPtfv~~~~g~ 73 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------DANNEYGVFEFYQNSQ 73 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------cCcccceEEEEEECCE
Confidence 34444444 234444 88999999999999999886544 34444432 799999999 67999
Q ss_pred EEeecH
Q psy1889 106 FIGGGT 111 (127)
Q Consensus 106 ~igg~~ 111 (127)
.++.+.
T Consensus 74 ~i~r~~ 79 (204)
T PTZ00062 74 LINSLE 79 (204)
T ss_pred EEeeee
Confidence 887654
No 95
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.81 E-value=5.1e-08 Score=64.73 Aligned_cols=69 Identities=12% Similarity=0.253 Sum_probs=45.8
Q ss_pred hhCCCcEEE-EEeCCChhHHHHHHHHHhcC------------CCCEEEEccCCCCchHH--------------------H
Q psy1889 39 LIASEKIVI-FSKSYCPYCKMAKDVFQKLK------------VTPKTVELDHRDDGDSI--------------------Q 85 (127)
Q Consensus 39 ~~~~~~ivv-f~~~~Cp~C~~~~~~l~~~~------------i~~~~i~i~~~~~~~~~--------------------~ 85 (127)
..++..++| |||+|||+|+...|.|.++. -.+..+-|+.+.+.++. .
T Consensus 22 ~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~ 101 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFR 101 (146)
T ss_pred HhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHH
Confidence 345666666 99999999999999997631 13666666655443221 2
Q ss_pred HHHHHhcCCCcccEEE-EC--CeEE
Q psy1889 86 DVLLEITGARSVPRVF-VN--GKFI 107 (127)
Q Consensus 86 ~~l~~~~~~~~~P~i~-~~--g~~i 107 (127)
..+.+.+++.++|+.+ ++ |+.+
T Consensus 102 ~~l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 102 RELEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHHHHcCCCCCCEEEEECCCCcEE
Confidence 2466677888999994 43 5544
No 96
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.81 E-value=2.8e-08 Score=59.27 Aligned_cols=59 Identities=36% Similarity=0.529 Sum_probs=42.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-----CCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeec
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKL-----KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGG 110 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~-----~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~ 110 (127)
+++|+++||++|+.+.+.+++. ++.+..++++.. ..+.+.+++.++|++ +.+|+.+...
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN-------PELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC-------hhHHHhcCcccccEEEEEECCEEEEEE
Confidence 4449999999999999999873 344445555442 347788899999998 4478744433
No 97
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.80 E-value=2.5e-08 Score=62.67 Aligned_cols=73 Identities=25% Similarity=0.439 Sum_probs=43.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-------CCCCEEEEccCCCCc---------------hHHHHHHHHhcCCCcccEE-
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKL-------KVTPKTVELDHRDDG---------------DSIQDVLLEITGARSVPRV- 100 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~-------~i~~~~i~i~~~~~~---------------~~~~~~l~~~~~~~~~P~i- 100 (127)
.+++|+++|||+|+++.+.+.+. ..++..+.++.+... ....+++.+.+++.++|++
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~~ 87 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTIV 87 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEEE
Confidence 35559999999999998877641 124566666554321 1124578899999999999
Q ss_pred EEC--Ce---EEeecHHHHHH
Q psy1889 101 FVN--GK---FIGGGTDVKAL 116 (127)
Q Consensus 101 ~~~--g~---~igg~~~l~~~ 116 (127)
+.+ |+ .+.|+..-..+
T Consensus 88 ~~d~~G~~v~~~~G~~~~~~l 108 (112)
T PF13098_consen 88 FLDKDGKIVYRIPGYLSPEEL 108 (112)
T ss_dssp ECTTTSCEEEEEESS--HHHH
T ss_pred EEcCCCCEEEEecCCCCHHHH
Confidence 445 66 45566544443
No 98
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.80 E-value=1.4e-07 Score=57.73 Aligned_cols=61 Identities=28% Similarity=0.527 Sum_probs=43.0
Q ss_pred cEEE-EEeCCChhHHHHHHHHHhcC----CCCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEee
Q psy1889 44 KIVI-FSKSYCPYCKMAKDVFQKLK----VTPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGG 109 (127)
Q Consensus 44 ~ivv-f~~~~Cp~C~~~~~~l~~~~----i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg 109 (127)
.+++ |+++||++|+.+.+.++++. -+...+.++.+.+ +.+.+.+++.++|++ +.+|+.+..
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~P~~~~~~~g~~~~~ 83 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN-----PDIAAKYGIRSIPTLLLFKNGKEVDR 83 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC-----HHHHHHcCCCcCCEEEEEeCCcEeee
Confidence 4444 99999999999998887653 2344555554433 347788999999998 447765433
No 99
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.77 E-value=3.4e-08 Score=61.72 Aligned_cols=58 Identities=22% Similarity=0.394 Sum_probs=39.7
Q ss_pred EEE-EEeCCChhHHHHHHHHHhcCC----CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCe
Q psy1889 45 IVI-FSKSYCPYCKMAKDVFQKLKV----TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGK 105 (127)
Q Consensus 45 ivv-f~~~~Cp~C~~~~~~l~~~~i----~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~ 105 (127)
++| |+++||++|+.+.+.++++.. .+....++.+.+. ...+.+.+++.++|++ |.+|+
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~---~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK---NKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc---cHHHHHHcCCCcCCEEEEEeCCC
Confidence 444 999999999999998877532 2333444433311 2457888999999999 44554
No 100
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.77 E-value=5.9e-08 Score=68.66 Aligned_cols=61 Identities=18% Similarity=0.370 Sum_probs=43.7
Q ss_pred CcEEE-EEeCCChhHHHHHHHHHhcCC----CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEe
Q psy1889 43 EKIVI-FSKSYCPYCKMAKDVFQKLKV----TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIG 108 (127)
Q Consensus 43 ~~ivv-f~~~~Cp~C~~~~~~l~~~~i----~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~ig 108 (127)
.+++| ||++||++|+.+.|.++++.- .+....++.+.+ +.+.+++++.++|++ |.+|+.+.
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-----~~l~~~~~I~~~PTl~~f~~G~~v~ 120 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-----LNLAKRFAIKGYPTLLLFDKGKMYQ 120 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-----HHHHHHcCCCcCCEEEEEECCEEEE
Confidence 34444 999999999999999877533 233334444332 468889999999999 56887653
No 101
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.74 E-value=1.2e-07 Score=55.03 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=57.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
.+|+.+.||+|++++-.|+..+++|+.+.++.... +...+++.+.+...++|++..+|..+..+..+..+.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl 72 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKG-ETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYL 72 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCc-ccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 57999999999999999999999999998875322 122355667778889999999999888887776653
No 102
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.74 E-value=7.2e-08 Score=60.69 Aligned_cols=56 Identities=14% Similarity=0.451 Sum_probs=37.0
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcCC-----CCEEEEccCCCCchHHHHHHH-HhcCCCcccEE
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLKV-----TPKTVELDHRDDGDSIQDVLL-EITGARSVPRV 100 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i-----~~~~i~i~~~~~~~~~~~~l~-~~~~~~~~P~i 100 (127)
.+.+++| |+++|||+|+.+.+.+.++.. .+....++.+.+. ..+. +.+++..+|++
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~----~~~~~~~~~v~~~Pti 82 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ----REFAKEELQLKSFPTI 82 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc----hhhHHhhcCCCcCCEE
Confidence 3445555 999999999999998877532 2444444443311 1244 35899999999
No 103
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.73 E-value=4.1e-08 Score=62.30 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=38.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcC
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG 93 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~ 93 (127)
|.+|+.++||+|++++.+|++.+++|+.+++..++...+-...+..+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~ 49 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSG 49 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHcC
Confidence 4689999999999999999999999999999887654333333333333
No 104
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.72 E-value=1.2e-07 Score=56.05 Aligned_cols=53 Identities=26% Similarity=0.579 Sum_probs=38.5
Q ss_pred EEEEEeCCChhHHHHHHHHHh----cCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeE
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQK----LKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKF 106 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~----~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~ 106 (127)
|.+ .+++||+|..+.+.+++ .+++++.+++. + .+++ .++|+.++|++++||+.
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~------~~~~-~~ygv~~vPalvIng~~ 59 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIE-D------FEEI-EKYGVMSVPALVINGKV 59 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETT-T------HHHH-HHTT-SSSSEEEETTEE
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc-C------HHHH-HHcCCCCCCEEEECCEE
Confidence 556 57889999988876654 56666666652 1 3446 78999999999999983
No 105
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.70 E-value=1.6e-07 Score=60.68 Aligned_cols=67 Identities=18% Similarity=0.380 Sum_probs=44.1
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhc-------CCCCEEEEccCCCCchH-------------------HHHHHHHhcC
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKL-------KVTPKTVELDHRDDGDS-------------------IQDVLLEITG 93 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~-------~i~~~~i~i~~~~~~~~-------------------~~~~l~~~~~ 93 (127)
++..++| ||++||++|+...+.|.+. +..+..+-++.+...++ ....+.+.++
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4445555 9999999999988887653 12455555555443221 2346778899
Q ss_pred CCcccEE-EE--CCeEE
Q psy1889 94 ARSVPRV-FV--NGKFI 107 (127)
Q Consensus 94 ~~~~P~i-~~--~g~~i 107 (127)
+.++|++ ++ +|+.+
T Consensus 97 v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 97 IEGIPTLIILDADGEVV 113 (131)
T ss_pred CCCCCEEEEECCCCCEE
Confidence 9999999 44 45544
No 106
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.68 E-value=7.5e-08 Score=60.35 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=38.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcC
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG 93 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~ 93 (127)
|.||+.++||+|++++.+|++.+++|+.+++..++...+-..++....+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKLG 49 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhcC
Confidence 4689999999999999999999999999999876654333333443333
No 107
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.68 E-value=1.3e-07 Score=58.39 Aligned_cols=55 Identities=25% Similarity=0.408 Sum_probs=39.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC----CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECC
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKV----TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNG 104 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i----~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g 104 (127)
++.|+++||++|+...+.+.++.- .+....++.+.. +.+.+.+++.++|++ |.+|
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH-----QSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch-----HHHHHHCCCCccCEEEEECCC
Confidence 334999999999999998877432 344444544432 457889999999999 4455
No 108
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.68 E-value=3.7e-08 Score=62.70 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=39.1
Q ss_pred cEEE-EEeCCChhHHHHHHHHHhcCCC-------CEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCe
Q psy1889 44 KIVI-FSKSYCPYCKMAKDVFQKLKVT-------PKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGK 105 (127)
Q Consensus 44 ~ivv-f~~~~Cp~C~~~~~~l~~~~i~-------~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~ 105 (127)
.+++ ||++||++|+.+.+.++++.-. +....++.+.+ ....+.+.+++.++|++ |.+|.
T Consensus 21 ~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 21 AWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE---ENVALCRDFGVTGYPTLRYFPPFS 89 (114)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch---hhHHHHHhCCCCCCCEEEEECCCC
Confidence 4444 9999999999999988775432 22233332211 13467888999999999 33444
No 109
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.67 E-value=4.3e-07 Score=58.76 Aligned_cols=69 Identities=20% Similarity=0.372 Sum_probs=43.2
Q ss_pred CCCcEEE-EEeCCChhHHHHHH-HHHh------cCCCCEEEEccCCCCchH---HHHHHHHhcCCCcccEE-EE--CCeE
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKD-VFQK------LKVTPKTVELDHRDDGDS---IQDVLLEITGARSVPRV-FV--NGKF 106 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~-~l~~------~~i~~~~i~i~~~~~~~~---~~~~l~~~~~~~~~P~i-~~--~g~~ 106 (127)
++.+|+| |+++||++|+.+.+ .+.. +.-.|..+.++.+...+. ..+.....+++.++|++ |. +|+.
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~ 93 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKP 93 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCE
Confidence 4555666 99999999999865 3322 344677777766543221 11222335689999999 55 4776
Q ss_pred Eee
Q psy1889 107 IGG 109 (127)
Q Consensus 107 igg 109 (127)
+.+
T Consensus 94 ~~~ 96 (124)
T cd02955 94 FFG 96 (124)
T ss_pred Eee
Confidence 643
No 110
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.66 E-value=5.2e-08 Score=59.85 Aligned_cols=60 Identities=23% Similarity=0.424 Sum_probs=40.7
Q ss_pred CCCc-EEEEEeCCChhHHHHHHHHHhcCC------CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCe
Q psy1889 41 ASEK-IVIFSKSYCPYCKMAKDVFQKLKV------TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGK 105 (127)
Q Consensus 41 ~~~~-ivvf~~~~Cp~C~~~~~~l~~~~i------~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~ 105 (127)
++.. ++.|+++||++|+.+.+.+++... .+....++.+. ...+.+++++.++|++ |.+|+
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-----EKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-----hHHHHHhCCCCcCCEEEEecCCC
Confidence 3444 334999999999999888866432 23444444433 2457888999999999 33555
No 111
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.64 E-value=3.9e-07 Score=55.28 Aligned_cols=60 Identities=20% Similarity=0.437 Sum_probs=41.6
Q ss_pred HHHhhCCC-cEEE-EEeCCChhHHHHHHHHHhcC------CCCEEEEccCCCCchHHHHHHHHhcCCCcccEE
Q psy1889 36 VQDLIASE-KIVI-FSKSYCPYCKMAKDVFQKLK------VTPKTVELDHRDDGDSIQDVLLEITGARSVPRV 100 (127)
Q Consensus 36 ~~~~~~~~-~ivv-f~~~~Cp~C~~~~~~l~~~~------i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i 100 (127)
+.+.+.+. .+++ |+++||++|+.+.+.+++.. ..+....++.+. ...+.+.+++..+|++
T Consensus 8 ~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~~~i~~~Pt~ 75 (101)
T cd02961 8 FDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-----NNDLCSEYGVRGYPTI 75 (101)
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-----hHHHHHhCCCCCCCEE
Confidence 33444333 4444 99999999999999887642 334455555443 2458888999999999
No 112
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.62 E-value=1.5e-07 Score=61.40 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=33.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCc
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDG 81 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~ 81 (127)
+.+|+.++||+|++++.+|++.+++|+.+++..++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~ 38 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLT 38 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhh
Confidence 6789999999999999999999999999999877643
No 113
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.60 E-value=3.9e-07 Score=53.44 Aligned_cols=71 Identities=8% Similarity=0.088 Sum_probs=58.4
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
++|+.+.|++|++++-.|++++++|+.+.++..... ...+++.+.+....+|++..+|..+..+..+..++
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~-~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yL 72 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSE-HNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYL 72 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCc-cCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHh
Confidence 579999999999999999999999999888764321 22356778888999999999999998888877664
No 114
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.57 E-value=6.3e-07 Score=58.16 Aligned_cols=67 Identities=16% Similarity=0.416 Sum_probs=43.4
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhc----C---CCCEEEEccCCCCch--------------------HHHHHHHHhc
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKL----K---VTPKTVELDHRDDGD--------------------SIQDVLLEIT 92 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~----~---i~~~~i~i~~~~~~~--------------------~~~~~l~~~~ 92 (127)
+++.++| ||++|||+|+...+.|+++ . ..+..+-++.+.+.. .....+++.+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4445555 9999999999988887653 2 134555554443321 1234677778
Q ss_pred CCCcccEEE-EC--CeEE
Q psy1889 93 GARSVPRVF-VN--GKFI 107 (127)
Q Consensus 93 ~~~~~P~i~-~~--g~~i 107 (127)
++.++|+++ ++ |+.+
T Consensus 96 ~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred CCCCCCEEEEECCCCCEE
Confidence 999999994 44 5555
No 115
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.55 E-value=2.7e-07 Score=58.00 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=38.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcC
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG 93 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~ 93 (127)
|.+|+.++|+.|++++.+|++.+++|+++++..++-..+-...+.+..|
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999999999999887643333333444444
No 116
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.55 E-value=3.4e-07 Score=70.86 Aligned_cols=60 Identities=15% Similarity=0.364 Sum_probs=40.6
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcCCC-------CEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCe
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLKVT-------PKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGK 105 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~-------~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~ 105 (127)
.+..++| ||++||++|+.+.|.++++.-. +..++++.+.. ....+.+++.++|++ |.+|.
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~-----~~~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK-----EFAKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc-----HHHHHHcCCCccceEEEEECCC
Confidence 3444555 9999999999999999776432 33344443321 224467899999999 66664
No 117
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.54 E-value=5.3e-07 Score=61.94 Aligned_cols=63 Identities=16% Similarity=0.393 Sum_probs=40.0
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcCC-CCEEEEccCCCCchHHHHH------------------HHHhcCCCcccEE
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLKV-TPKTVELDHRDDGDSIQDV------------------LLEITGARSVPRV 100 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i-~~~~i~i~~~~~~~~~~~~------------------l~~~~~~~~~P~i 100 (127)
+++.++| ||++|||+|++..|.|+++.- .+..+.|+.+++.++..+. +...+++.++|+.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t 146 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPET 146 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeE
Confidence 4444555 999999999999999877643 3555666544333333222 2334678889955
Q ss_pred -EEC
Q psy1889 101 -FVN 103 (127)
Q Consensus 101 -~~~ 103 (127)
+++
T Consensus 147 ~vid 150 (185)
T PRK15412 147 FLID 150 (185)
T ss_pred EEEC
Confidence 554
No 118
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.54 E-value=7e-07 Score=57.06 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=46.7
Q ss_pred HHHhhCCCcEEE--EEe--CCCh---hHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCC--cccEE--EECC
Q psy1889 36 VQDLIASEKIVI--FSK--SYCP---YCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGAR--SVPRV--FVNG 104 (127)
Q Consensus 36 ~~~~~~~~~ivv--f~~--~~Cp---~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~--~~P~i--~~~g 104 (127)
+.+.++..+.++ |++ |||+ +|+...+.+.+..-....-.|+-+..++.....+.+++++. ++||+ |.+|
T Consensus 11 F~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g 90 (116)
T cd03007 11 FYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGG 90 (116)
T ss_pred HHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCC
Confidence 344555555444 999 9999 99999998877654333333333222222236799999998 99999 7777
Q ss_pred e
Q psy1889 105 K 105 (127)
Q Consensus 105 ~ 105 (127)
+
T Consensus 91 ~ 91 (116)
T cd03007 91 D 91 (116)
T ss_pred C
Confidence 4
No 119
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.53 E-value=1.5e-06 Score=50.94 Aligned_cols=74 Identities=7% Similarity=0.041 Sum_probs=60.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
+.+|+.+.||+|++++-.|+..+++|+.+.++.... +...+++.+.+....+|++..+|..+.+...+..++.+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~ 75 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKG-EHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAE 75 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCcccc-ccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhh
Confidence 467999999999999999999999999988876432 12234577778899999999899999988888887653
No 120
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.53 E-value=2.8e-07 Score=56.83 Aligned_cols=57 Identities=16% Similarity=0.402 Sum_probs=38.2
Q ss_pred CcEEE-EEeCCChhHHHHHHHHHhcCC------CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCe
Q psy1889 43 EKIVI-FSKSYCPYCKMAKDVFQKLKV------TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGK 105 (127)
Q Consensus 43 ~~ivv-f~~~~Cp~C~~~~~~l~~~~i------~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~ 105 (127)
..++| |+++||++|+.+.+.+++..- .+....++.+.. ++...+++.++|++ |.+|+
T Consensus 19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~------~~~~~~~~~~~Pt~~~~~~~~ 84 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN------DVPSEFVVDGFPTILFFPAGD 84 (104)
T ss_pred CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch------hhhhhccCCCCCEEEEEcCCC
Confidence 34444 999999999999998877542 244444444332 25556678999999 44554
No 121
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.52 E-value=2.9e-07 Score=58.86 Aligned_cols=49 Identities=12% Similarity=0.254 Sum_probs=38.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcC
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG 93 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~ 93 (127)
+.+|+.++||+|++++.+|++.+++|+.+++..++...+-...+.+..|
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLE 49 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcC
Confidence 4689999999999999999999999999999876654333344444444
No 122
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.52 E-value=1.7e-06 Score=50.56 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=56.0
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCC-CcccEEEECCeEEeecHHHHHHHHc
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGA-RSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~-~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
.+|+.+.||+|++++-.|+..+++|+.+.++.... .+++.+.+.. .++|++..+|..+.++..+.+++++
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~----~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~ 72 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNK----SELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDE 72 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccC----CHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHh
Confidence 57889999999999999999999999987765321 2345556664 7999999899989888888877653
No 123
>KOG0190|consensus
Probab=98.51 E-value=3e-07 Score=71.26 Aligned_cols=70 Identities=23% Similarity=0.415 Sum_probs=50.8
Q ss_pred HHHHHHHhhCCCcEEE--EEeCCChhHHHHHHHHHh-------cCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE--
Q psy1889 32 SKQFVQDLIASEKIVI--FSKSYCPYCKMAKDVFQK-------LKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV-- 100 (127)
Q Consensus 32 ~~~~~~~~~~~~~ivv--f~~~~Cp~C~~~~~~l~~-------~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i-- 100 (127)
+.+.+...+..+.+++ |+||||++|++..|-+.+ .+-+.....||-..+ ..++.++++.++||+
T Consensus 31 t~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-----~~~~~~y~v~gyPTlki 105 (493)
T KOG0190|consen 31 TKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-----SDLASKYEVRGYPTLKI 105 (493)
T ss_pred ecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-----hhhHhhhcCCCCCeEEE
Confidence 3466777888888775 999999999987666544 333444444443332 569999999999999
Q ss_pred EECCeE
Q psy1889 101 FVNGKF 106 (127)
Q Consensus 101 ~~~g~~ 106 (127)
|++|+.
T Consensus 106 FrnG~~ 111 (493)
T KOG0190|consen 106 FRNGRS 111 (493)
T ss_pred EecCCc
Confidence 888884
No 124
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.51 E-value=4.4e-07 Score=55.96 Aligned_cols=52 Identities=21% Similarity=0.379 Sum_probs=37.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC------CCCEEEEccCCCCchHHHHHHHHhcCCCcccEE
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLK------VTPKTVELDHRDDGDSIQDVLLEITGARSVPRV 100 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~------i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i 100 (127)
++.||++||++|+.+.+.+.+.. ..+....++.+.. .+.+.+.+++.++|++
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~~i~~~P~~ 79 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA----NKDLAKKYGVSGFPTL 79 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc----chhhHHhCCCCCcCEE
Confidence 33499999999999998886643 2344555554441 2458888999999999
No 125
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.51 E-value=2.9e-06 Score=50.73 Aligned_cols=53 Identities=23% Similarity=0.580 Sum_probs=40.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCC--C--CEEEEccCCCCchHHHHHHHHhcCCCcccEEEECC
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKV--T--PKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNG 104 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i--~--~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g 104 (127)
++++|++++|+.|..++..|.+... + +..+||+.+ +++..+|+. .+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d-------~~l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED-------PELFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT-------HHHHHHSCT-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC-------HHHHHHhcC-CCCEEEEcC
Confidence 4788999999999999999997643 3 445666643 348889997 599999988
No 126
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.50 E-value=1.1e-06 Score=53.85 Aligned_cols=65 Identities=17% Similarity=0.331 Sum_probs=56.3
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 51 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 51 ~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
..||+|++++-.|.+++++|+.+.++..... +++.+.+..+.+|++..+|..+.....+.++.++
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p----~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde 84 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKP----EDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEE 84 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCC----HHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHH
Confidence 6799999999999999999999988875432 4577888899999999999999999998888765
No 127
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.50 E-value=6.1e-07 Score=58.58 Aligned_cols=38 Identities=13% Similarity=0.323 Sum_probs=34.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCch
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGD 82 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~ 82 (127)
|++|+.++|+.|++++.+|++.+++|+.+++..++...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~ 39 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTV 39 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCH
Confidence 67899999999999999999999999999998765433
No 128
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.50 E-value=6.5e-07 Score=58.50 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=37.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHh
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEI 91 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~ 91 (127)
+.+|+.++|+.|++++.+|++.+++|+++++..++-..+-...+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~ 48 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILTK 48 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHH
Confidence 67899999999999999999999999999998766443333334333
No 129
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.49 E-value=5.5e-07 Score=65.47 Aligned_cols=59 Identities=25% Similarity=0.387 Sum_probs=38.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCC----CCEEEEccCCCCc----hHHHHHHHHhcCCCcccEEEE
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKV----TPKTVELDHRDDG----DSIQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i----~~~~i~i~~~~~~----~~~~~~l~~~~~~~~~P~i~~ 102 (127)
.++.||++|||+|+...+.|+++.- .+..++++..... ......+.+.+++.++|++++
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 3444999999999999999977543 3333444432110 000134678899999999933
No 130
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.49 E-value=6.3e-07 Score=57.14 Aligned_cols=47 Identities=15% Similarity=0.296 Sum_probs=37.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHh
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEI 91 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~ 91 (127)
+.+|+.++|+.|++++.+|++.+++|+.+++..++...+-...+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~ 48 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSL 48 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHH
Confidence 67899999999999999999999999999998765433333334433
No 131
>PTZ00102 disulphide isomerase; Provisional
Probab=98.48 E-value=5.8e-07 Score=69.49 Aligned_cols=68 Identities=19% Similarity=0.407 Sum_probs=44.4
Q ss_pred HHHHhhCCCc-EEE-EEeCCChhHHHHHHHHHhcC-------CCCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EEC
Q psy1889 35 FVQDLIASEK-IVI-FSKSYCPYCKMAKDVFQKLK-------VTPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVN 103 (127)
Q Consensus 35 ~~~~~~~~~~-ivv-f~~~~Cp~C~~~~~~l~~~~-------i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~ 103 (127)
.+.+.++..+ ++| |+++||++|+++.+.+.+.. .++....++-+.+ ..+.+++++.++|++ |.+
T Consensus 41 ~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~ 115 (477)
T PTZ00102 41 TFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-----MELAQEFGVRGYPTIKFFNK 115 (477)
T ss_pred hHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-----HHHHHhcCCCcccEEEEEEC
Confidence 3444444433 333 99999999999988776532 2344444444332 458889999999999 556
Q ss_pred CeEE
Q psy1889 104 GKFI 107 (127)
Q Consensus 104 g~~i 107 (127)
|+.+
T Consensus 116 g~~~ 119 (477)
T PTZ00102 116 GNPV 119 (477)
T ss_pred CceE
Confidence 6643
No 132
>KOG4277|consensus
Probab=98.45 E-value=1.6e-07 Score=68.62 Aligned_cols=63 Identities=16% Similarity=0.389 Sum_probs=44.8
Q ss_pred CCCcEEE--EEeCCChhHHHHHHHHHhcCCCCEE----EEccCCCCchHHHHHHHHhcCCCcccEE-EE-CCe
Q psy1889 41 ASEKIVI--FSKSYCPYCKMAKDVFQKLKVTPKT----VELDHRDDGDSIQDVLLEITGARSVPRV-FV-NGK 105 (127)
Q Consensus 41 ~~~~ivv--f~~~~Cp~C~~~~~~l~~~~i~~~~----i~i~~~~~~~~~~~~l~~~~~~~~~P~i-~~-~g~ 105 (127)
++..+.+ |++|||++|++..|+.++.|-.... +.+.+.+. -..+.++..+++.++|+| |. +|.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDa--T~f~aiAnefgiqGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDA--TRFPAIANEFGIQGYPTIKFFKGDH 111 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccccc--ccchhhHhhhccCCCceEEEecCCe
Confidence 4455555 9999999999999999997764432 33333322 125679999999999999 44 444
No 133
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.43 E-value=4.9e-07 Score=60.50 Aligned_cols=62 Identities=21% Similarity=0.424 Sum_probs=36.9
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhcC----CCCEEEEccCCCCch------HHHHHHHHhc---CCCcccEEEE
Q psy1889 41 ASEKIVIFSKSYCPYCKMAKDVFQKLK----VTPKTVELDHRDDGD------SIQDVLLEIT---GARSVPRVFV 102 (127)
Q Consensus 41 ~~~~ivvf~~~~Cp~C~~~~~~l~~~~----i~~~~i~i~~~~~~~------~~~~~l~~~~---~~~~~P~i~~ 102 (127)
.+..++.||++|||+|++..|.|+++. +.+..++++...... .........+ ++.++|+.|+
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 344566699999999999999997653 333344444321000 0012223344 6789999943
No 134
>PLN02309 5'-adenylylsulfate reductase
Probab=98.40 E-value=1.9e-06 Score=66.68 Aligned_cols=61 Identities=18% Similarity=0.425 Sum_probs=40.2
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcCC-----CCEEEEccCCCCchHHHHHHHH-hcCCCcccEE--EECCe
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLKV-----TPKTVELDHRDDGDSIQDVLLE-ITGARSVPRV--FVNGK 105 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i-----~~~~i~i~~~~~~~~~~~~l~~-~~~~~~~P~i--~~~g~ 105 (127)
++..++| |+++||++|+.+.+.++++.. .+....++.+.. ...+.+ .+++.++||+ |.+|.
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~----~~~la~~~~~I~~~PTil~f~~g~ 433 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD----QKEFAKQELQLGSFPTILLFPKNS 433 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc----chHHHHhhCCCceeeEEEEEeCCC
Confidence 3444444 999999999999999977643 233444444411 123554 6899999999 55554
No 135
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.40 E-value=2.2e-06 Score=49.83 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=49.3
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 51 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 51 ~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
++||+|++++.+|+..+++|+.++++... ......+|++..+|+.+.++..+..+.++
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------~~p~g~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW-----------RSPTGKLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc-----------cCCCcccCEEEECCEEEcCHHHHHHHHhh
Confidence 58999999999999999999999887532 33567899999999999999888877654
No 136
>KOG2501|consensus
Probab=98.40 E-value=1.1e-06 Score=58.53 Aligned_cols=73 Identities=18% Similarity=0.482 Sum_probs=50.6
Q ss_pred HHHHhhCCCcEEE-EEeCCChhHHHHHHHHHh----c---CCCCEEEEccCCCCchHHHHHHH-----------------
Q psy1889 35 FVQDLIASEKIVI-FSKSYCPYCKMAKDVFQK----L---KVTPKTVELDHRDDGDSIQDVLL----------------- 89 (127)
Q Consensus 35 ~~~~~~~~~~ivv-f~~~~Cp~C~~~~~~l~~----~---~i~~~~i~i~~~~~~~~~~~~l~----------------- 89 (127)
...+.++++-|.+ |++.|||+||..-|.|.+ . +-+++++-|+.|.++++....+.
T Consensus 26 ~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~ 105 (157)
T KOG2501|consen 26 LASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQ 105 (157)
T ss_pred hHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHH
Confidence 3444566655555 889999999987766654 3 33589999998877666644444
Q ss_pred ---HhcCCCcccEEEE---CCeEE
Q psy1889 90 ---EITGARSVPRVFV---NGKFI 107 (127)
Q Consensus 90 ---~~~~~~~~P~i~~---~g~~i 107 (127)
.+|.+.++|++.+ +|..|
T Consensus 106 ~l~~ky~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 106 KLSEKYEVKGIPALVILKPDGTVV 129 (157)
T ss_pred HHHHhcccCcCceeEEecCCCCEe
Confidence 4678999999933 56544
No 137
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.40 E-value=1.4e-06 Score=66.78 Aligned_cols=66 Identities=24% Similarity=0.465 Sum_probs=44.3
Q ss_pred HHHhhCCCc-EEE-EEeCCChhHHHHHHHHHhc-------CCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECC
Q psy1889 36 VQDLIASEK-IVI-FSKSYCPYCKMAKDVFQKL-------KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNG 104 (127)
Q Consensus 36 ~~~~~~~~~-ivv-f~~~~Cp~C~~~~~~l~~~-------~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g 104 (127)
+...++..+ ++| ||++||++|+.+.+.+.+. +-++....++-+.. .++.+++++.++|++ |.+|
T Consensus 11 ~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~g 85 (462)
T TIGR01130 11 FDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-----KDLAQKYGVSGYPTLKIFRNG 85 (462)
T ss_pred HHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-----HHHHHhCCCccccEEEEEeCC
Confidence 334444444 333 9999999999999887653 21244455554432 458889999999999 6667
Q ss_pred eE
Q psy1889 105 KF 106 (127)
Q Consensus 105 ~~ 106 (127)
+.
T Consensus 86 ~~ 87 (462)
T TIGR01130 86 ED 87 (462)
T ss_pred cc
Confidence 64
No 138
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.39 E-value=2.2e-06 Score=54.97 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=40.7
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcCC--CCEEEEccCCCCchHH------------------HHHHHHhcCCCcccE
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLKV--TPKTVELDHRDDGDSI------------------QDVLLEITGARSVPR 99 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i--~~~~i~i~~~~~~~~~------------------~~~l~~~~~~~~~P~ 99 (127)
++..++| ||++|||+|+...+.|+++.. .+..+.++.+...+.. ...+++.+++.++|+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~ 103 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPE 103 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCe
Confidence 3445455 999999999999998877643 2444444432221111 123556678888994
Q ss_pred E-EE--CCeEE
Q psy1889 100 V-FV--NGKFI 107 (127)
Q Consensus 100 i-~~--~g~~i 107 (127)
. ++ +|+.+
T Consensus 104 ~~~ld~~G~v~ 114 (127)
T cd03010 104 TFLIDGDGIIR 114 (127)
T ss_pred EEEECCCceEE
Confidence 4 55 45544
No 139
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.37 E-value=2.1e-06 Score=54.68 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=36.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCC-chHHHHH
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDD-GDSIQDV 87 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~-~~~~~~~ 87 (127)
.|++|+.+.|+.|++++.+|++++++|+++++..++- .+++...
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~ 45 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPF 45 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHH
Confidence 3789999999999999999999999999999987653 3344333
No 140
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.2e-06 Score=50.03 Aligned_cols=64 Identities=23% Similarity=0.452 Sum_probs=47.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCC-C---------chHHHHHHHHhcCCCcccEEEE-CCeEEee
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-D---------GDSIQDVLLEITGARSVPRVFV-NGKFIGG 109 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~-~---------~~~~~~~l~~~~~~~~~P~i~~-~g~~igg 109 (127)
.++|++..||.|..+...|++++++|+.++|..+- + .....++ .+.+|.-++|.+.. +|+.|-|
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~-vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDE-VKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHh-hhhcCcccceEEEeCCCcEEEe
Confidence 37899999999999999999999999999987541 1 1111222 23457889999965 5666654
No 141
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.35 E-value=8.2e-06 Score=47.64 Aligned_cols=71 Identities=4% Similarity=-0.097 Sum_probs=57.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
+.+|+.+.|+.|++++-.|...+++|+.+.++.+ +..+++.+.+...++|++..+|..+.+...+..++.+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~----~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE----EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH----HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhc
Confidence 5778888999999999999999999999888752 2233466666778999999999999998888887643
No 142
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.35 E-value=4.1e-06 Score=51.01 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=23.9
Q ss_pred EEEeCCChhHHHHHHHHHhc----C--CCCEEEEccCCCC
Q psy1889 47 IFSKSYCPYCKMAKDVFQKL----K--VTPKTVELDHRDD 80 (127)
Q Consensus 47 vf~~~~Cp~C~~~~~~l~~~----~--i~~~~i~i~~~~~ 80 (127)
.||++||++|+...+.|.++ . ..+..+.|+.+++
T Consensus 7 ~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~ 46 (95)
T PF13905_consen 7 YFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED 46 (95)
T ss_dssp EEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred EEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence 39999999999998888663 3 4666666666544
No 143
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.33 E-value=5.1e-06 Score=48.29 Aligned_cols=68 Identities=13% Similarity=0.243 Sum_probs=53.9
Q ss_pred EEEEeCCChhHHHHHHHHHh--cCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE-CCeEEeecHHHHHHH
Q psy1889 46 VIFSKSYCPYCKMAKDVFQK--LKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV-NGKFIGGGTDVKALY 117 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~--~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~-~g~~igg~~~l~~~~ 117 (127)
.+|+.+.||+|.+++-.|.. .+++|+.+.++.... .+++.+.++..++|++.. +|..+.++..+..+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~----~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yL 72 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSD----DESLLAVNPLGKIPALVLDDGEALFDSRVICEYL 72 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccC----ChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhh
Confidence 57899999999999999999 889999988875322 234566678899999975 788888877776653
No 144
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.33 E-value=3.5e-06 Score=57.23 Aligned_cols=68 Identities=21% Similarity=0.362 Sum_probs=41.2
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcCC-CCEEEEccCCCCchHHHH------------------HHHHhcCCCcccEE
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLKV-TPKTVELDHRDDGDSIQD------------------VLLEITGARSVPRV 100 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i-~~~~i~i~~~~~~~~~~~------------------~l~~~~~~~~~P~i 100 (127)
++..+++ ||++|||+|+...+.++++.- .+..+.++.+...++..+ .+.+.+++.++|+.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~ 141 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPET 141 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeE
Confidence 3444555 999999999999998877633 255555544322222111 24455678889954
Q ss_pred -EE--CCeEEe
Q psy1889 101 -FV--NGKFIG 108 (127)
Q Consensus 101 -~~--~g~~ig 108 (127)
++ +|+.+.
T Consensus 142 ~~id~~G~i~~ 152 (173)
T TIGR00385 142 FLVDGNGVILY 152 (173)
T ss_pred EEEcCCceEEE
Confidence 55 466443
No 145
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.33 E-value=1.4e-06 Score=47.71 Aligned_cols=56 Identities=27% Similarity=0.564 Sum_probs=38.3
Q ss_pred EEEEEeCCChhHHHHHHHHHh-----cCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECC
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQK-----LKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNG 104 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~-----~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g 104 (127)
+++|+.+||++|+++.+.+.+ .++.+..++++.... . ......++..++|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA--L--EKELKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH--H--hhHHHhCCCccccEEEEEe
Confidence 357999999999999999994 344555555554432 1 1113467889999996643
No 146
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.33 E-value=3.3e-07 Score=59.67 Aligned_cols=77 Identities=21% Similarity=0.474 Sum_probs=38.9
Q ss_pred ChhHHHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhcC-----CCCEEEEccCCCCchHHHHHHHHhcCCCcccEE-EE
Q psy1889 29 NPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLK-----VTPKTVELDHRDDGDSIQDVLLEITGARSVPRV-FV 102 (127)
Q Consensus 29 ~~~~~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i-~~ 102 (127)
+.+..+.+....++..+++++.+|||+|....|.|.+.. +++..+..+... +..+.... .|..++|++ +.
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~---el~~~~lt-~g~~~IP~~I~~ 104 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENK---ELMDQYLT-NGGRSIPTFIFL 104 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHH---HHTTTTTT--SS--SSEEEEE
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCh---hHHHHHHh-CCCeecCEEEEE
Confidence 455556666666777899999999999999999997752 333333333211 11111111 478999999 44
Q ss_pred C--CeEEee
Q psy1889 103 N--GKFIGG 109 (127)
Q Consensus 103 ~--g~~igg 109 (127)
+ |+.+|.
T Consensus 105 d~~~~~lg~ 113 (129)
T PF14595_consen 105 DKDGKELGR 113 (129)
T ss_dssp -TT--EEEE
T ss_pred cCCCCEeEE
Confidence 3 565543
No 147
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.31 E-value=5.5e-06 Score=47.90 Aligned_cols=71 Identities=7% Similarity=0.097 Sum_probs=56.5
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
.+|+.+.|+.|.+++-+|+..+++|+.+.++..+.. ...+++.+.+....+|++..+|..+..+..+..++
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGE-QLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYL 72 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCC-cCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 578888999999999999999999999888764321 12345667778899999999999888887777664
No 148
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.30 E-value=1.6e-06 Score=55.26 Aligned_cols=61 Identities=16% Similarity=0.434 Sum_probs=39.5
Q ss_pred CCcEEE-EEeCCChhHHHHHHHHHhcCCCCEEEEccCCCC-chH-----------------HHHHHHHhcCCCcccEEEE
Q psy1889 42 SEKIVI-FSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDD-GDS-----------------IQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 42 ~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~-~~~-----------------~~~~l~~~~~~~~~P~i~~ 102 (127)
+..++| |+++|||+|+...+.|.++.-.+..+-|..+.+ .++ ....+.+.+++.++|++++
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~v 99 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIVI 99 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEEE
Confidence 344444 999999999999998887655555444433221 010 1134777889999999843
No 149
>KOG3029|consensus
Probab=98.27 E-value=6.9e-06 Score=59.54 Aligned_cols=69 Identities=14% Similarity=0.351 Sum_probs=54.8
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 43 EKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 43 ~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
-++++|-..+||+|.+++.+|+-++++|.+++++... +++++ -+.+..+|.+.+.|+....+.-+...+
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~-----r~eIk-~SsykKVPil~~~Geqm~dSsvIIs~l 157 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL-----RQEIK-WSSYKKVPILLIRGEQMVDSSVIISLL 157 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchh-----hhhcc-ccccccccEEEeccceechhHHHHHHH
Confidence 3788899999999999999999999999999998643 22333 346889999999888776666555443
No 150
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=98.27 E-value=1.2e-05 Score=47.10 Aligned_cols=73 Identities=8% Similarity=0.109 Sum_probs=58.6
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
.+|+.+.+++|+++.-.|+..+++|+.+.++..+. +...+++.+.+....+|++..+|..+..+..+..+..+
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~ 74 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKG-EQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLAR 74 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCC-CcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHh
Confidence 57999999999999999999999999888875432 11224567777889999998889888888888877654
No 151
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.26 E-value=6.5e-06 Score=65.57 Aligned_cols=64 Identities=14% Similarity=0.288 Sum_probs=41.7
Q ss_pred CCcEEE-EEeCCChhHHHHHHHH-H-----hcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE-EE--CCeE
Q psy1889 42 SEKIVI-FSKSYCPYCKMAKDVF-Q-----KLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV-FV--NGKF 106 (127)
Q Consensus 42 ~~~ivv-f~~~~Cp~C~~~~~~l-~-----~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i-~~--~g~~ 106 (127)
+++++| ||++||++|+..++.. + +.--++..+.+|.+++.. ..+++.+++++.++|++ +. +|+.
T Consensus 474 gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~-~~~~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 474 GKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNA-EDVALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred CCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCCh-hhHHHHHHcCCCCCCEEEEECCCCCC
Confidence 455666 9999999999987642 1 111245555555543321 23568889999999999 44 4664
No 152
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.25 E-value=2.8e-06 Score=53.35 Aligned_cols=58 Identities=19% Similarity=0.340 Sum_probs=34.9
Q ss_pred CCcEEE-EEeCCChhHHHHHHHHHhcCC----CCEEEEccCCCCchHHHHHHHHhcCCCcccEEE
Q psy1889 42 SEKIVI-FSKSYCPYCKMAKDVFQKLKV----TPKTVELDHRDDGDSIQDVLLEITGARSVPRVF 101 (127)
Q Consensus 42 ~~~ivv-f~~~~Cp~C~~~~~~l~~~~i----~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~ 101 (127)
+.+++| ||++|||+|+...+.++++.- ....+-+. +.+. +....+.+.++...+|+++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~-~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEK-AEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCH-HHHHHHHHHhCCCCCcEEe
Confidence 445555 999999999999998877532 33444443 2222 2334455555665566654
No 153
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.24 E-value=5e-06 Score=48.26 Aligned_cols=68 Identities=12% Similarity=0.230 Sum_probs=52.1
Q ss_pred CChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE-CCeEEeecHHHHHHHHc
Q psy1889 52 YCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV-NGKFIGGGTDVKALYEK 119 (127)
Q Consensus 52 ~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~-~g~~igg~~~l~~~~~~ 119 (127)
.||+|+++.-+|+.+++++....+.....+....+++.+.++..++|++.. +|+.+..+..+.+++++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhc
Confidence 499999999999999999997776432222222345778888999999987 89999999999888764
No 154
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=98.24 E-value=1.1e-05 Score=56.24 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=61.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHcC
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKG 120 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~~ 120 (127)
.+.+|+.++||+|.+++-.|++.+++|+.+.++.... .+++.+.+..+.+|++..+|..+..+..+..++.+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~----~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~ 82 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNL----PQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDER 82 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccC----CHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHh
Confidence 4778999999999999999999999999998886321 245777788999999999999999988888876543
No 155
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.22 E-value=3.1e-06 Score=58.01 Aligned_cols=59 Identities=25% Similarity=0.497 Sum_probs=36.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----CCCCEEEEccCCC-----Cch-HHHHHHHHhcCC--CcccEEEE
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKL----KVTPKTVELDHRD-----DGD-SIQDVLLEITGA--RSVPRVFV 102 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~----~i~~~~i~i~~~~-----~~~-~~~~~l~~~~~~--~~~P~i~~ 102 (127)
++++||++|||+|++..|.|+++ ++.+.-+.++... ..- +-...+...++. .++|+.|+
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfL 142 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFL 142 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEE
Confidence 47779999999999998887664 4333334444321 000 012335566774 68999954
No 156
>PTZ00102 disulphide isomerase; Provisional
Probab=98.22 E-value=2.6e-06 Score=65.92 Aligned_cols=59 Identities=15% Similarity=0.359 Sum_probs=39.7
Q ss_pred CCcEEE-EEeCCChhHHHHHHHHHhcCCC------CEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCe
Q psy1889 42 SEKIVI-FSKSYCPYCKMAKDVFQKLKVT------PKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGK 105 (127)
Q Consensus 42 ~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~------~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~ 105 (127)
+.+++| ||++||++|+.+.+.+++++.. +....++.+.+ +...+.+++.++|++ |.+|+
T Consensus 375 ~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~-----~~~~~~~~v~~~Pt~~~~~~~~ 442 (477)
T PTZ00102 375 DKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN-----ETPLEEFSWSAFPTILFVKAGE 442 (477)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC-----ccchhcCCCcccCeEEEEECCC
Confidence 344555 9999999999999999875422 22333443332 235667889999999 44554
No 157
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=98.20 E-value=1.5e-05 Score=46.14 Aligned_cols=70 Identities=9% Similarity=-0.025 Sum_probs=56.1
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHH
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYE 118 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~ 118 (127)
++|+.+.|+.|++++-.|+..+++|+.+.++.... ....+.+.+...++|++..+|..+.++..+..++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~ 71 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEW---PELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLA 71 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHh---hhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhh
Confidence 57888999999999999999999999988875321 11235566678999999999999998888877653
No 158
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.19 E-value=3.8e-06 Score=66.01 Aligned_cols=66 Identities=15% Similarity=0.296 Sum_probs=41.3
Q ss_pred CCcEEE-EEeCCChhHHHHHHHHHhcCC-----CCEEEEccC-----CCCchH------------------HHHHHHHhc
Q psy1889 42 SEKIVI-FSKSYCPYCKMAKDVFQKLKV-----TPKTVELDH-----RDDGDS------------------IQDVLLEIT 92 (127)
Q Consensus 42 ~~~ivv-f~~~~Cp~C~~~~~~l~~~~i-----~~~~i~i~~-----~~~~~~------------------~~~~l~~~~ 92 (127)
+.+++| ||++|||+|+...|.|+++.- .+..+.|.. +...++ ....+.+.+
T Consensus 56 GKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~f 135 (521)
T PRK14018 56 DKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSL 135 (521)
T ss_pred CCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHc
Confidence 444555 999999999999999977532 233333321 000011 123467788
Q ss_pred CCCcccEE-EE--CCeEE
Q psy1889 93 GARSVPRV-FV--NGKFI 107 (127)
Q Consensus 93 ~~~~~P~i-~~--~g~~i 107 (127)
++.++|++ ++ +|+.+
T Consensus 136 gV~giPTt~IIDkdGkIV 153 (521)
T PRK14018 136 NISVYPSWAIIGKDGDVQ 153 (521)
T ss_pred CCCCcCeEEEEcCCCeEE
Confidence 99999999 45 47654
No 159
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.17 E-value=9.6e-06 Score=57.15 Aligned_cols=69 Identities=22% Similarity=0.412 Sum_probs=48.1
Q ss_pred HHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhc----CCCCEEEEccCCCC----chHHHHHHHHhcCCCcccEEEE
Q psy1889 34 QFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKL----KVTPKTVELDHRDD----GDSIQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 34 ~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~----~i~~~~i~i~~~~~----~~~~~~~l~~~~~~~~~P~i~~ 102 (127)
..++.+.+...+++|+.++||+|+.+.++|..+ |+.+..|.+|.... ....-..+++++++..+|++|.
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 445566677789999999999999999999775 55555566653100 0000245778899999999955
No 160
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=98.16 E-value=1.7e-05 Score=46.44 Aligned_cols=71 Identities=8% Similarity=0.026 Sum_probs=57.5
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE-CCeEEeecHHHHHHHH
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV-NGKFIGGGTDVKALYE 118 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~-~g~~igg~~~l~~~~~ 118 (127)
.+|+.+.||+|.+++-.|+..+++|+.+.++.... ...+++.+.+....+|++.. +|..+.....+..++.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~--~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~ 73 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE--NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVA 73 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc--cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHh
Confidence 47888999999999999999999999988886432 22345777788999999987 4888888888877754
No 161
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.14 E-value=3.3e-05 Score=45.76 Aligned_cols=73 Identities=10% Similarity=0.141 Sum_probs=57.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEEC---CeEEeecHHHHHHHHc
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN---GKFIGGGTDVKALYEK 119 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~---g~~igg~~~l~~~~~~ 119 (127)
+.+|+.+. |+|++++-.|++.+++|+.+.++.... +...+++.+.+....+|++..+ |..+..+..+..++.+
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~ 77 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKG-EQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAE 77 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCC-cccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHH
Confidence 46788775 999999999999999999888775321 1223457777788999999887 7888888888887654
No 162
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.14 E-value=3.2e-05 Score=45.28 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=51.8
Q ss_pred EEEEEeC-------CChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 45 IVIFSKS-------YCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 45 ivvf~~~-------~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
+++|..+ +||+|.+++-+|...+++|+.+.++.. +.....++|++..+|+.+.++..+.++.
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----------~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----------KRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----------cCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 3556655 679999999999999999998877631 3456789999999999999998888876
Q ss_pred Hc
Q psy1889 118 EK 119 (127)
Q Consensus 118 ~~ 119 (127)
++
T Consensus 71 ~~ 72 (75)
T cd03080 71 EE 72 (75)
T ss_pred HH
Confidence 54
No 163
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=98.13 E-value=1.4e-05 Score=51.17 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=39.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcC
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG 93 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~ 93 (127)
.|.+|+.|.|..|++++.||++++++|.++++...+-..+....+.+..|
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 47899999999999999999999999999998876543333333444444
No 164
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.11 E-value=1.2e-05 Score=47.94 Aligned_cols=56 Identities=20% Similarity=0.418 Sum_probs=36.0
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHh-------cCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQK-------LKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~-------~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~ 102 (127)
++.++.| |+++||++|+.+.+.+-. +.-+|..+.++.+...... .+.. .++|++++
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~----~~~P~~~~ 79 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDR----QGYPTFFF 79 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHH----CSSSEEEE
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCC----ccCCEEEE
Confidence 4555555 999999999998876622 3447888888775432211 1222 45999943
No 165
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=98.10 E-value=2e-05 Score=55.02 Aligned_cols=68 Identities=22% Similarity=0.472 Sum_probs=55.0
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEE-ECCeEEeecHHHHHHHHc
Q psy1889 47 IFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVF-VNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 47 vf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~-~~g~~igg~~~l~~~~~~ 119 (127)
+|+...||+|++++-+|+.++++|+.+++...+.. ...+.++..++|++. .+|..+.++..+..++++
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-----~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-----TPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch-----hHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 68889999999999999999999998877554321 124555678999997 788899999999888775
No 166
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.10 E-value=1.8e-05 Score=54.62 Aligned_cols=65 Identities=12% Similarity=0.265 Sum_probs=37.4
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcCC--CCEEEEccCCCCchHH----------------HHHHHHhcCCCcccEEE
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLKV--TPKTVELDHRDDGDSI----------------QDVLLEITGARSVPRVF 101 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i--~~~~i~i~~~~~~~~~----------------~~~l~~~~~~~~~P~i~ 101 (127)
+++++++ ||++|||+|++..|.+.+..- ....+-++.+ +.++. ..++.+.+++..+|+.|
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDG-TPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCC-CHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 3444554 999999999998887755321 1222333311 11111 23455667888899875
Q ss_pred E-C--CeE
Q psy1889 102 V-N--GKF 106 (127)
Q Consensus 102 ~-~--g~~ 106 (127)
+ | |+.
T Consensus 152 lID~~G~I 159 (189)
T TIGR02661 152 LLDQDGKI 159 (189)
T ss_pred EECCCCeE
Confidence 4 4 553
No 167
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.09 E-value=1.4e-05 Score=47.87 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=52.5
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEEC-CeEEeecHHHHHHHHc
Q psy1889 51 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN-GKFIGGGTDVKALYEK 119 (127)
Q Consensus 51 ~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~-g~~igg~~~l~~~~~~ 119 (127)
++||+|.+++-.|...+++|+.+.++.... ....+++ +..+...+|++..+ |..+.++..+..++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~-~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~ 81 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDI-PPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEE 81 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCc-ccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHH
Confidence 789999999999999999999888775322 1222334 45568899999888 8999999988888664
No 168
>PRK10387 glutaredoxin 2; Provisional
Probab=98.08 E-value=2.6e-05 Score=54.00 Aligned_cols=70 Identities=17% Similarity=0.427 Sum_probs=55.9
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE-EECCeEEeecHHHHHHHHcC
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV-FVNGKFIGGGTDVKALYEKG 120 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i-~~~g~~igg~~~l~~~~~~~ 120 (127)
.+|+.+.||+|.+++-.|+.+|++|+.++++..+. ... .+.++..++|++ ..+|..+.++..+..++++.
T Consensus 2 ~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~----~~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~ 72 (210)
T PRK10387 2 KLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDE----ATP-IRMIGQKQVPILQKDDGSYMPESLDIVHYIDEL 72 (210)
T ss_pred EEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCch----hhH-HHhcCCcccceEEecCCeEecCHHHHHHHHHHh
Confidence 57888999999999999999999999988864332 111 345567899999 56888999999999888764
No 169
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=98.07 E-value=5.1e-05 Score=44.07 Aligned_cols=71 Identities=7% Similarity=0.023 Sum_probs=56.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
.+|+.+.+|+|++++-.|++.+++|+.+.++.... +...+++.+.+....+|++..+|..+.....+..++
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~-~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL 72 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFG-GLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYL 72 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEeccccc-cccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHh
Confidence 57889999999999999999999999888764322 122345667778899999998998888877776653
No 170
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=98.04 E-value=2.2e-05 Score=49.95 Aligned_cols=49 Identities=12% Similarity=0.293 Sum_probs=38.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcC
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG 93 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~ 93 (127)
|.+|+.+.|+.|+++..+|++.+++|..+++...+-..+-...+.+..|
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLG 49 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcC
Confidence 4689999999999999999999999999999876544333344444444
No 171
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=98.04 E-value=2.2e-05 Score=49.85 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=37.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcC
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG 93 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~ 93 (127)
+.+|+.+.|..|+++..+|++.+++|..+++.+.+-..+-...+.+..+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLG 49 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcC
Confidence 4689999999999999999999999999998776533333333444433
No 172
>PRK10026 arsenate reductase; Provisional
Probab=98.03 E-value=3e-05 Score=51.18 Aligned_cols=50 Identities=12% Similarity=0.280 Sum_probs=39.5
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCC-CchHHHHHHHHhcC
Q psy1889 43 EKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQDVLLEITG 93 (127)
Q Consensus 43 ~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~-~~~~~~~~l~~~~~ 93 (127)
..+.+|+.+.|..|+++..||++++++|+++++-.++ ..+++...+. ..|
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~-~~g 52 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIA-DMG 52 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHH-hCC
Confidence 3588999999999999999999999999999987765 4444444333 344
No 173
>KOG3425|consensus
Probab=98.01 E-value=1.7e-05 Score=50.55 Aligned_cols=70 Identities=20% Similarity=0.341 Sum_probs=40.4
Q ss_pred HHHHHHhhCCCcEEE-EEe--------CCChhHHHHHHHHHhc------CCCCEEEEccCCCCchHHHHHHHHhcCC-Cc
Q psy1889 33 KQFVQDLIASEKIVI-FSK--------SYCPYCKMAKDVFQKL------KVTPKTVELDHRDDGDSIQDVLLEITGA-RS 96 (127)
Q Consensus 33 ~~~~~~~~~~~~ivv-f~~--------~~Cp~C~~~~~~l~~~------~i~~~~i~i~~~~~~~~~~~~l~~~~~~-~~ 96 (127)
.+.++...++..+.+ |++ +|||+|.++.|++.+. +..+..+.+...+.=......+++..+. ..
T Consensus 16 ~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~ 95 (128)
T KOG3425|consen 16 EETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTA 95 (128)
T ss_pred HHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceee
Confidence 344444445555655 543 8999999999988662 2234455555443211112234444455 78
Q ss_pred ccEEEE
Q psy1889 97 VPRVFV 102 (127)
Q Consensus 97 ~P~i~~ 102 (127)
+||+..
T Consensus 96 vPTLlr 101 (128)
T KOG3425|consen 96 VPTLLR 101 (128)
T ss_pred cceeeE
Confidence 999954
No 174
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.01 E-value=2.8e-05 Score=65.91 Aligned_cols=71 Identities=23% Similarity=0.318 Sum_probs=44.4
Q ss_pred hhCCCcEEE-EEeCCChhHHHHHHHHHhcCCC-----CEEEEcc-----CCCCchHH-----------------HHHHHH
Q psy1889 39 LIASEKIVI-FSKSYCPYCKMAKDVFQKLKVT-----PKTVELD-----HRDDGDSI-----------------QDVLLE 90 (127)
Q Consensus 39 ~~~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~-----~~~i~i~-----~~~~~~~~-----------------~~~l~~ 90 (127)
..++..++| ||++|||+|+...|.|+++.-+ +..+.|. ...+.++. ...+.+
T Consensus 417 ~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~ 496 (1057)
T PLN02919 417 DLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR 496 (1057)
T ss_pred hcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence 345555666 9999999999999999775332 4445442 11111111 224566
Q ss_pred hcCCCcccEE-EE--CCeEEee
Q psy1889 91 ITGARSVPRV-FV--NGKFIGG 109 (127)
Q Consensus 91 ~~~~~~~P~i-~~--~g~~igg 109 (127)
.+++.++|++ ++ +|+.+..
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred hcCCCccceEEEECCCCeEEEE
Confidence 7889999999 44 5765543
No 175
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.01 E-value=4.8e-05 Score=54.18 Aligned_cols=69 Identities=19% Similarity=0.373 Sum_probs=45.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC---CCCEEEEccC------------------C-------------------CCchH
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLK---VTPKTVELDH------------------R-------------------DDGDS 83 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~---i~~~~i~i~~------------------~-------------------~~~~~ 83 (127)
.|++|+.+.||||++..+.+.++. +.+..+.+.. + ...-+
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~v~ 189 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVDIA 189 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccchHH
Confidence 467799999999999998887752 3222221110 0 00012
Q ss_pred HHHHHHHhcCCCcccEEEE-CCeEEeecHH
Q psy1889 84 IQDVLLEITGARSVPRVFV-NGKFIGGGTD 112 (127)
Q Consensus 84 ~~~~l~~~~~~~~~P~i~~-~g~~igg~~~ 112 (127)
....+.+..|+.++|+++. ||+.+.|+..
T Consensus 190 ~~~~la~~lgi~gTPtiv~~~G~~~~G~~~ 219 (232)
T PRK10877 190 DHYALGVQFGVQGTPAIVLSNGTLVPGYQG 219 (232)
T ss_pred HhHHHHHHcCCccccEEEEcCCeEeeCCCC
Confidence 2344566678999999976 9999999754
No 176
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.00 E-value=4.6e-05 Score=51.22 Aligned_cols=67 Identities=13% Similarity=0.403 Sum_probs=42.6
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcCC-----CCEEEEccCCCCchHH-----------------HHHHHHhcCCCcc
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLKV-----TPKTVELDHRDDGDSI-----------------QDVLLEITGARSV 97 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i-----~~~~i~i~~~~~~~~~-----------------~~~l~~~~~~~~~ 97 (127)
+++.++| ||++|||+|+...+.|.+... .+..+.++.+...+.. ...+.+.+++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 4444444 999999999998877765432 2455555554332221 2456778899999
Q ss_pred cEEE-EC--CeEE
Q psy1889 98 PRVF-VN--GKFI 107 (127)
Q Consensus 98 P~i~-~~--g~~i 107 (127)
|++| ++ |+.+
T Consensus 140 P~~~lid~~g~i~ 152 (173)
T PRK03147 140 PTTFLIDKDGKVV 152 (173)
T ss_pred CeEEEECCCCcEE
Confidence 9874 43 6654
No 177
>PRK10853 putative reductase; Provisional
Probab=97.98 E-value=3.3e-05 Score=49.55 Aligned_cols=44 Identities=11% Similarity=0.254 Sum_probs=36.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCC-CchHHHHHH
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQDVL 88 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~-~~~~~~~~l 88 (127)
+.+|+.+.|..|+++..+|++.+++|+.+++...+ +.+++...+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l 46 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFI 46 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHH
Confidence 67899999999999999999999999999987765 344444433
No 178
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.98 E-value=2.8e-05 Score=50.67 Aligned_cols=64 Identities=20% Similarity=0.353 Sum_probs=35.8
Q ss_pred HHHHHhhC-CCcEEE-EEeCCChhHHHHHHHH-Hh------cCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE-EEC
Q psy1889 34 QFVQDLIA-SEKIVI-FSKSYCPYCKMAKDVF-QK------LKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV-FVN 103 (127)
Q Consensus 34 ~~~~~~~~-~~~ivv-f~~~~Cp~C~~~~~~l-~~------~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i-~~~ 103 (127)
+.+..+.+ +.+|.| |++.||++|+++.+.. +. +.-+|..++++.+..... .. ..+ ..+|++ |++
T Consensus 14 eal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~----~~-~~g-~~vPtivFld 87 (130)
T cd02960 14 EGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKN----LS-PDG-QYVPRIMFVD 87 (130)
T ss_pred HHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCC----cC-ccC-cccCeEEEEC
Confidence 33444443 445555 9999999999988753 22 223566555554322111 11 123 579999 664
No 179
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.96 E-value=4.7e-05 Score=49.35 Aligned_cols=46 Identities=11% Similarity=0.199 Sum_probs=36.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCC-CchHHHHHHH
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQDVLL 89 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~-~~~~~~~~l~ 89 (127)
.+.+|+.+.|..|++++.+|++.+++|+.+++..++ +.+++...+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFG 48 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHH
Confidence 367899999999999999999999999999987654 3444444333
No 180
>PRK15113 glutathione S-transferase; Provisional
Probab=97.94 E-value=0.0001 Score=51.44 Aligned_cols=76 Identities=16% Similarity=0.234 Sum_probs=61.3
Q ss_pred CcEEEEEeC--CChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 43 EKIVIFSKS--YCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 43 ~~ivvf~~~--~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
..+++|+.+ .||+|+++.-.|.+.+++|+.+.++.... +...+++.+.+....+|++..+|..+..+..+..++.+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~-~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~ 81 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAG-EHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEE 81 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCc-cccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence 346788865 69999999999999999999988876432 22335677788899999999999999888888877654
No 181
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.93 E-value=2.8e-05 Score=47.87 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=38.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC----CEEEEccCCCCchHHHHHHHHhcCCC--cccEE
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVT----PKTVELDHRDDGDSIQDVLLEITGAR--SVPRV 100 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~----~~~i~i~~~~~~~~~~~~l~~~~~~~--~~P~i 100 (127)
+++|+++||++|+.+++.+++.+-. +..+.++.+. .+.+.+.+++. ++|++
T Consensus 16 ~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~-----~~~~~~~~~i~~~~~P~~ 72 (103)
T cd02982 16 LVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD-----FGRHLEYFGLKEEDLPVI 72 (103)
T ss_pred EEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh-----hHHHHHHcCCChhhCCEE
Confidence 4449999999999999999886543 3444455433 24588888998 99999
No 182
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=97.92 E-value=0.00011 Score=43.05 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=54.9
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEEC-CeEEeecHHHHHHHHc
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN-GKFIGGGTDVKALYEK 119 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~-g~~igg~~~l~~~~~~ 119 (127)
.+|+.+.| .|++++-.|.+.+++|+.+.++..+. +...+++.+.+....+|++..+ |..+..+..+..++.+
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~ 74 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTK-TQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLAD 74 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecccC-ccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHH
Confidence 46777766 48889999999999999888876432 1223567778889999999887 8888888888877653
No 183
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=5e-05 Score=57.13 Aligned_cols=87 Identities=16% Similarity=0.253 Sum_probs=61.7
Q ss_pred HHcCCCCCCChhHHHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhcCC-CCEEEEccCCCCchHHHHHHHHhcCCCccc
Q psy1889 20 TLGASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKV-TPKTVELDHRDDGDSIQDVLLEITGARSVP 98 (127)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i-~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P 98 (127)
..+..++...++..+.++.+-.+....-|.+-+|..|..+.+.|+-+.+ +....++..+- .-+++++..+ +++++|
T Consensus 95 qv~G~ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdG--a~Fq~Evear-~IMaVP 171 (520)
T COG3634 95 QVGGHPPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDG--ALFQDEVEAR-NIMAVP 171 (520)
T ss_pred HhcCCCCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecc--hhhHhHHHhc-cceecc
Confidence 3455566667888888888866666666999999999999999988765 33333333322 2344555543 899999
Q ss_pred EEEECCeEEee
Q psy1889 99 RVFVNGKFIGG 109 (127)
Q Consensus 99 ~i~~~g~~igg 109 (127)
++|.||+..|.
T Consensus 172 tvflnGe~fg~ 182 (520)
T COG3634 172 TVFLNGEEFGQ 182 (520)
T ss_pred eEEEcchhhcc
Confidence 99999997764
No 184
>KOG0190|consensus
Probab=97.90 E-value=1e-05 Score=62.89 Aligned_cols=28 Identities=18% Similarity=0.573 Sum_probs=23.4
Q ss_pred CcEEE-EEeCCChhHHHHHHHHHhcCCCC
Q psy1889 43 EKIVI-FSKSYCPYCKMAKDVFQKLKVTP 70 (127)
Q Consensus 43 ~~ivv-f~~~~Cp~C~~~~~~l~~~~i~~ 70 (127)
..|.+ |+||||+||++..|++++++-.|
T Consensus 385 KdVLvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 385 KDVLVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred cceEEEEcCcccchhhhhhhHHHHHHHHh
Confidence 44555 99999999999999999987544
No 185
>KOG0912|consensus
Probab=97.89 E-value=1e-05 Score=59.24 Aligned_cols=68 Identities=19% Similarity=0.365 Sum_probs=46.8
Q ss_pred HhhCCCcEEE--EEeCCChhHHHHHHHHHhcCC----CCE---EEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeE
Q psy1889 38 DLIASEKIVI--FSKSYCPYCKMAKDVFQKLKV----TPK---TVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKF 106 (127)
Q Consensus 38 ~~~~~~~ivv--f~~~~Cp~C~~~~~~l~~~~i----~~~---~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~ 106 (127)
..+....+++ |+|.||++++..+|++++.+. .|. .+=-..+. +....++.+|.+..+||+ |.+|..
T Consensus 8 ~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDc---d~e~~ia~ky~I~KyPTlKvfrnG~~ 84 (375)
T KOG0912|consen 8 SILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDC---DKEDDIADKYHINKYPTLKVFRNGEM 84 (375)
T ss_pred HhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEccc---chhhHHhhhhccccCceeeeeeccch
Confidence 3455566666 999999999999999988643 222 12111222 113569999999999999 889874
Q ss_pred Ee
Q psy1889 107 IG 108 (127)
Q Consensus 107 ig 108 (127)
..
T Consensus 85 ~~ 86 (375)
T KOG0912|consen 85 MK 86 (375)
T ss_pred hh
Confidence 43
No 186
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.88 E-value=0.00011 Score=47.09 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=20.4
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhc
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKL 66 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~ 66 (127)
+++.++| |+++|||+|.+..+.|+++
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l 48 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDL 48 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHH
Confidence 4444555 9999999999998888765
No 187
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.87 E-value=8e-05 Score=45.74 Aligned_cols=58 Identities=26% Similarity=0.511 Sum_probs=35.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC-----CCEEEEccCCCC-chHHH-----------------HHHHHhcCCCcccEEE
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKV-----TPKTVELDHRDD-GDSIQ-----------------DVLLEITGARSVPRVF 101 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i-----~~~~i~i~~~~~-~~~~~-----------------~~l~~~~~~~~~P~i~ 101 (127)
++.|+++|||+|+...+.+.++.. .+..+-++.+.. .+... ..+.+.+++..+|+++
T Consensus 23 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 102 (116)
T cd02966 23 LVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTF 102 (116)
T ss_pred EEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCccceEE
Confidence 444999999999988887766432 334444544442 22221 2355666777788773
Q ss_pred E
Q psy1889 102 V 102 (127)
Q Consensus 102 ~ 102 (127)
+
T Consensus 103 l 103 (116)
T cd02966 103 L 103 (116)
T ss_pred E
Confidence 3
No 188
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.80 E-value=6.3e-05 Score=51.78 Aligned_cols=20 Identities=5% Similarity=-0.011 Sum_probs=18.1
Q ss_pred EEeCCChhHHHHHHHHHhcC
Q psy1889 48 FSKSYCPYCKMAKDVFQKLK 67 (127)
Q Consensus 48 f~~~~Cp~C~~~~~~l~~~~ 67 (127)
|||+||++|+.-.|+++.+.
T Consensus 66 ~~Aswc~~c~~e~P~l~~l~ 85 (184)
T TIGR01626 66 HIAGRTSAKEXNASLIDAIK 85 (184)
T ss_pred EEecCCChhhccchHHHHHH
Confidence 99999999999999987763
No 189
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=97.79 E-value=0.00024 Score=41.26 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=55.7
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
.+|+.+. +.|.+++-.|...+++|+.+.++.... ....+++.+.+....+|++..+|..+.++..+..++.+
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~ 73 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPG-EQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAE 73 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCC-ccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHH
Confidence 4677665 678999999999999999888775321 11234566777889999999999999999988887654
No 190
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.76 E-value=0.00019 Score=49.65 Aligned_cols=74 Identities=19% Similarity=0.403 Sum_probs=46.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc--CCCCEEEEccC--------------------------------------CCCch
Q psy1889 43 EKIVIFSKSYCPYCKMAKDVFQKL--KVTPKTVELDH--------------------------------------RDDGD 82 (127)
Q Consensus 43 ~~ivvf~~~~Cp~C~~~~~~l~~~--~i~~~~i~i~~--------------------------------------~~~~~ 82 (127)
..+++|+.++||+|+++.+.+.+. ++.+..+.+.. ....-
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~~i 158 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDNPV 158 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCchH
Confidence 456679999999999999988742 22222221110 00111
Q ss_pred HHHHHHHHhcCCCcccEEEE-CCeEEeecHHHHHH
Q psy1889 83 SIQDVLLEITGARSVPRVFV-NGKFIGGGTDVKAL 116 (127)
Q Consensus 83 ~~~~~l~~~~~~~~~P~i~~-~g~~igg~~~l~~~ 116 (127)
+....+.+.+|+.++|+++. +|+.+.|+.....+
T Consensus 159 ~~~~~l~~~~gi~gtPtii~~~G~~~~G~~~~~~l 193 (197)
T cd03020 159 AANLALGRQLGVNGTPTIVLADGRVVPGAPPAAQL 193 (197)
T ss_pred HHHHHHHHHcCCCcccEEEECCCeEecCCCCHHHH
Confidence 22345666678999999966 69999888654433
No 191
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=97.75 E-value=0.00022 Score=50.95 Aligned_cols=65 Identities=12% Similarity=0.187 Sum_probs=56.6
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 51 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 51 ~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
..||+|++++-.|...+++|+.+.++.... .+++.+.+....+|++..+|..+..+..+..++++
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~----~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e 81 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRK----PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEE 81 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCC----CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHH
Confidence 679999999999999999999998887542 24577888899999999999999999999998875
No 192
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.75 E-value=5.4e-05 Score=58.10 Aligned_cols=57 Identities=16% Similarity=0.405 Sum_probs=37.1
Q ss_pred CCcEEE-EEeCCChhHHHHHHHHHhcCC-------CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCe
Q psy1889 42 SEKIVI-FSKSYCPYCKMAKDVFQKLKV-------TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGK 105 (127)
Q Consensus 42 ~~~ivv-f~~~~Cp~C~~~~~~l~~~~i-------~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~ 105 (127)
+..++| |+++||++|+.+.+.++++.- .+....++.+.+ .+.. +++.++|++ |.+|.
T Consensus 364 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n------~~~~-~~i~~~Pt~~~~~~~~ 430 (462)
T TIGR01130 364 TKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN------DVPP-FEVEGFPTIKFVPAGK 430 (462)
T ss_pred CCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC------ccCC-CCccccCEEEEEeCCC
Confidence 344555 999999999999999877432 233344444332 1333 789999999 44554
No 193
>KOG0406|consensus
Probab=97.75 E-value=0.00031 Score=49.90 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=63.1
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhc-CCCcccEEEECCeEEeecHHHHHHHHcC
Q psy1889 42 SEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEIT-GARSVPRVFVNGKFIGGGTDVKALYEKG 120 (127)
Q Consensus 42 ~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~-~~~~~P~i~~~g~~igg~~~l~~~~~~~ 120 (127)
+..+.+|+..-||+.++++=.|+..+++|++++++-..- .+.+.+++ -...+|++..||+.|..+-.+.++.++.
T Consensus 7 ~~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~K----s~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~ 82 (231)
T KOG0406|consen 7 DGTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNK----SEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDET 82 (231)
T ss_pred CCeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCC----CHHHHHhccccccCCEEEECCceehhhHHHHHHHHhh
Confidence 356899999999999999999999999999999887531 24566666 4689999999999999998888887653
No 194
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.73 E-value=0.00017 Score=45.54 Aligned_cols=67 Identities=6% Similarity=0.069 Sum_probs=42.0
Q ss_pred HHHHHhhCCC-cEEE-EEeCCChhHHHHHH-HHHhc------CCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE-EEC
Q psy1889 34 QFVQDLIASE-KIVI-FSKSYCPYCKMAKD-VFQKL------KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV-FVN 103 (127)
Q Consensus 34 ~~~~~~~~~~-~ivv-f~~~~Cp~C~~~~~-~l~~~------~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i-~~~ 103 (127)
+.++.+.+.. .++| ++++||++|+.+.+ +|..- +-.|..+.++.... + ...+...+++.++|++ +++
T Consensus 8 ~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~--e-~~~~~~~~~~~~~P~~~~i~ 84 (114)
T cd02958 8 DAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS--E-GQRFLQSYKVDKYPHIAIID 84 (114)
T ss_pred HHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc--c-HHHHHHHhCccCCCeEEEEe
Confidence 3344444444 4444 88999999998764 45332 23555555555331 1 3458888999999999 553
No 195
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.71 E-value=0.00047 Score=40.14 Aligned_cols=66 Identities=11% Similarity=0.139 Sum_probs=52.8
Q ss_pred eCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 50 KSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 50 ~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
...|++|++++-.|+..+++|+.+.++.... +..+++.+.+....+|++..+|..+.....+..++
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~--~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL 72 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTP--DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYL 72 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc--cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHh
Confidence 4679999999999999999999988875432 12356777778999999999999888887776653
No 196
>PLN02378 glutathione S-transferase DHAR1
Probab=97.71 E-value=0.00024 Score=49.70 Aligned_cols=65 Identities=18% Similarity=0.342 Sum_probs=54.2
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 51 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 51 ~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
.+||+|+++.-.|++.+++|+.+.++.... .+++.+.+..+.+|++..+|..+..+..+..++.+
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~----~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~ 82 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK----PQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEE 82 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC----CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHH
Confidence 569999999999999999999888876432 23567778899999999999999888888887764
No 197
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00028 Score=47.21 Aligned_cols=76 Identities=20% Similarity=0.360 Sum_probs=43.8
Q ss_pred HHHHHHHhhCCCc--EEEEEeCCChhHHHHHHHHHhc-------CCCCE--EE----------EccCCCCchHHHHHHHH
Q psy1889 32 SKQFVQDLIASEK--IVIFSKSYCPYCKMAKDVFQKL-------KVTPK--TV----------ELDHRDDGDSIQDVLLE 90 (127)
Q Consensus 32 ~~~~~~~~~~~~~--ivvf~~~~Cp~C~~~~~~l~~~-------~i~~~--~i----------~i~~~~~~~~~~~~l~~ 90 (127)
..+..+.+..+.+ +.+|.+++|++|.+.++-+... .-.+. .+ .+... +...-.+++++
T Consensus 31 ~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~k-ee~~s~~ELa~ 109 (182)
T COG2143 31 VFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDK-EEKMSTEELAQ 109 (182)
T ss_pred hHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCce-eeeecHHHHHH
Confidence 3455555555444 4449999999999887655321 00111 11 11111 11112457999
Q ss_pred hcCCCcccEE-EEC--CeEEe
Q psy1889 91 ITGARSVPRV-FVN--GKFIG 108 (127)
Q Consensus 91 ~~~~~~~P~i-~~~--g~~ig 108 (127)
.++++++|++ |.+ |+-|+
T Consensus 110 kf~vrstPtfvFfdk~Gk~Il 130 (182)
T COG2143 110 KFAVRSTPTFVFFDKTGKTIL 130 (182)
T ss_pred HhccccCceEEEEcCCCCEEE
Confidence 9999999999 444 45444
No 198
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.71 E-value=0.00025 Score=46.39 Aligned_cols=27 Identities=26% Similarity=0.662 Sum_probs=21.2
Q ss_pred hCCCcEEE-EEeC-CChhHHHHHHHHHhc
Q psy1889 40 IASEKIVI-FSKS-YCPYCKMAKDVFQKL 66 (127)
Q Consensus 40 ~~~~~ivv-f~~~-~Cp~C~~~~~~l~~~ 66 (127)
.++++++| ||++ |||+|+...+.|+++
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l 54 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNEL 54 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHH
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhh
Confidence 45566555 9999 999999999888765
No 199
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.70 E-value=0.0002 Score=51.71 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=48.8
Q ss_pred HHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhc----CCCCEEEEccCCCCch----HHHHHHHHhcCCCcccEEEE
Q psy1889 33 KQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKL----KVTPKTVELDHRDDGD----SIQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 33 ~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~----~i~~~~i~i~~~~~~~----~~~~~l~~~~~~~~~P~i~~ 102 (127)
...++.+.+...+++|+.+.||+|++..++|+.+ |+...-+.+|...... ..-...++++++..+|++|.
T Consensus 142 ~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 142 EKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred HHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 3446666778889999999999999999999664 5555556555431100 01134677889999999955
No 200
>PLN02473 glutathione S-transferase
Probab=97.67 E-value=0.00037 Score=48.42 Aligned_cols=74 Identities=8% Similarity=0.015 Sum_probs=58.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
+.+|+.+.||+|++++-.|.+++++|+.+.++..... ...++..+.+.-..+|++..+|..+.++..+..++.+
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~ 76 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLE-QKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYAT 76 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccc-cCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHH
Confidence 4679889999999999999999999998877654321 1223455567889999999999999999988887754
No 201
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=97.66 E-value=0.00018 Score=49.81 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=58.3
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHcC
Q psy1889 47 IFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKG 120 (127)
Q Consensus 47 vf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~~ 120 (127)
+|+...||+|++++-+|.+.+++|+.+.++....++...+++.+.+.-..+|++..+|..+..+..+..+..+.
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~ 75 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEET 75 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHh
Confidence 57778899999999999999999998888742111122345777778899999999999999998888877653
No 202
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=97.64 E-value=0.00036 Score=50.70 Aligned_cols=66 Identities=17% Similarity=0.343 Sum_probs=53.8
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHcC
Q psy1889 51 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKG 120 (127)
Q Consensus 51 ~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~~ 120 (127)
-+||+|++++-+|++.+++|+.+.++.... .+++.+.+....+|++..+|..+..+..+..++++-
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~----~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~ 136 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNK----PEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEK 136 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcC----CHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHH
Confidence 459999999999999999999888876432 244667778899999998998888888888877653
No 203
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.63 E-value=0.00032 Score=48.83 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=24.9
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcCC-----CCEEEEcc
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLKV-----TPKTVELD 76 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i-----~~~~i~i~ 76 (127)
+++.++| ||++|||+|+...+.|+++.- .+..+-|+
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~ 79 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFP 79 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEec
Confidence 4445555 999999999988887776522 35555554
No 204
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.62 E-value=5.4e-05 Score=48.56 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=26.7
Q ss_pred CCChhHHHHHHHHHhc----CCCCE--EEEccCCCCchHHHHHHHH--hcCCCcccEEEE
Q psy1889 51 SYCPYCKMAKDVFQKL----KVTPK--TVELDHRDDGDSIQDVLLE--ITGARSVPRVFV 102 (127)
Q Consensus 51 ~~Cp~C~~~~~~l~~~----~i~~~--~i~i~~~~~~~~~~~~l~~--~~~~~~~P~i~~ 102 (127)
+|||+|+.+.|.+++. .-+.. .+.+...+.=.+....+++ .+.+.++||++.
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 8999999999988662 22333 4444322100000123444 478899999965
No 205
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.62 E-value=0.00034 Score=50.28 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=46.9
Q ss_pred HHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhc----CCCCEEEEccCCCCch----HHHHHHHHhcCCCcccEEEE
Q psy1889 34 QFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKL----KVTPKTVELDHRDDGD----SIQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 34 ~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~----~i~~~~i~i~~~~~~~----~~~~~l~~~~~~~~~P~i~~ 102 (127)
..++.+.+...+++|+.+.||+|+...|+|+.+ |+...-+.+|...... ......++..++..+|++|.
T Consensus 136 ~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~L 212 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALML 212 (248)
T ss_pred HHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEE
Confidence 346666778889999999999999999999775 5555555554321100 00122456789999999965
No 206
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=97.55 E-value=0.00024 Score=44.76 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=31.6
Q ss_pred EEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcC
Q psy1889 48 FSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG 93 (127)
Q Consensus 48 f~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~ 93 (127)
|+.+.|..|+++..+|++.+++|..+++...+-..+-...+.+..+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 7889999999999999999999999999886644444444555555
No 207
>PLN02412 probable glutathione peroxidase
Probab=97.54 E-value=0.00049 Score=46.49 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=36.0
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcC-----CCCEEEEccCC-------CCchHHHHHHHHhcCCCcccEEE
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLK-----VTPKTVELDHR-------DDGDSIQDVLLEITGARSVPRVF 101 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~-------~~~~~~~~~l~~~~~~~~~P~i~ 101 (127)
+++.++| ||++|||+|+...+.|+++. -.+..+-|+.+ ...++..+.+.+.++. ++|.+.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~-~fpvl~ 100 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKA-EFPIFD 100 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCC-CCceEe
Confidence 4455555 99999999998777776642 23555555432 1223444555555555 377764
No 208
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.51 E-value=0.00088 Score=43.68 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=22.2
Q ss_pred hcCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 91 ITGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 91 ~~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
..|+.++|+++++|+.+.|..+...+.
T Consensus 124 ~~gi~gtPt~~v~g~~~~G~~~~~~l~ 150 (154)
T cd03023 124 ALGITGTPAFIIGDTVIPGAVPADTLK 150 (154)
T ss_pred HcCCCcCCeEEECCEEecCCCCHHHHH
Confidence 457899999999999999987766553
No 209
>KOG0191|consensus
Probab=97.51 E-value=0.00015 Score=55.12 Aligned_cols=55 Identities=27% Similarity=0.470 Sum_probs=39.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC----CEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECC
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVT----PKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNG 104 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~----~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g 104 (127)
++.|+++||++|.+..+.+.+++-. .....++-+. ...+.+.+++.++|++ |..|
T Consensus 51 ~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~-----~~~~~~~y~i~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 51 LVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE-----HKDLCEKYGIQGFPTLKVFRPG 111 (383)
T ss_pred EEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh-----hHHHHHhcCCccCcEEEEEcCC
Confidence 4459999999999999988865332 2333344332 3568999999999999 4455
No 210
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.45 E-value=0.00067 Score=44.98 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=19.2
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhc
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKL 66 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~ 66 (127)
+++.++| ||++|||+|....+.|.++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l 47 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQEL 47 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHH
Confidence 4555444 9999999999877766554
No 211
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.44 E-value=0.00086 Score=44.43 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=24.2
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcCC-----CCEEEEcc
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLKV-----TPKTVELD 76 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i-----~~~~i~i~ 76 (127)
+++.+++ ||++||| |+...+.|+++.- .+..+-|+
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~ 61 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFP 61 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEec
Confidence 4455555 9999999 9998888877532 34455554
No 212
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.44 E-value=0.00025 Score=43.11 Aligned_cols=60 Identities=23% Similarity=0.548 Sum_probs=36.6
Q ss_pred CCcEEE-EEeCCChhHHHHHHHHHhcCCC----CEEEEccCCCCchHHHHHHHHhcC--CCcccEEE--ECCe
Q psy1889 42 SEKIVI-FSKSYCPYCKMAKDVFQKLKVT----PKTVELDHRDDGDSIQDVLLEITG--ARSVPRVF--VNGK 105 (127)
Q Consensus 42 ~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~----~~~i~i~~~~~~~~~~~~l~~~~~--~~~~P~i~--~~g~ 105 (127)
+..+++ |+++|||+|+...+.+.+..-. ...+.++.... .+.+...++ +..+|++. .+++
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~ 100 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE----NPDLAAEFGVAVRSIPTLLLFKDGK 100 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC----ChHHHHHHhhhhccCCeEEEEeCcc
Confidence 444555 6899999999999999775432 33444444211 123444555 67778874 4554
No 213
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=97.39 E-value=0.0021 Score=37.96 Aligned_cols=71 Identities=10% Similarity=0.005 Sum_probs=52.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHH--hcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLE--ITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~--~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
..+|+.+..+.|++++-+|++.+++|+.+.++..+ +. ..... ...-..+|++..+|..+..+..+..++.+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~---~~-~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAE---DL-EKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAG 74 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHH---HH-HhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHH
Confidence 46788888899999999999999999988876421 11 11111 11356899999899999998888887654
No 214
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0009 Score=46.47 Aligned_cols=74 Identities=9% Similarity=0.175 Sum_probs=61.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCe-EEeecHHHHHHHHcCC
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGK-FIGGGTDVKALYEKGE 121 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~-~igg~~~l~~~~~~~~ 121 (127)
.+|+.+.+|+|++++-.+.+++++|+.+.++... +...+++...+....+|++..++. .+..+..+..++++..
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~--~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~ 76 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA--EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERY 76 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCccc--ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhC
Confidence 4678888899999999999999999999988865 233566888888999999988765 7888888888877643
No 215
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.37 E-value=0.00095 Score=47.74 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=19.7
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhc
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKL 66 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~ 66 (127)
++..++| ||++|||+|+...+.|.++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L 124 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHL 124 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHH
Confidence 4444444 9999999999888777664
No 216
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.37 E-value=0.00071 Score=46.34 Aligned_cols=59 Identities=10% Similarity=0.087 Sum_probs=34.2
Q ss_pred CCCcEE--EEEeCCChhHHHHHHHHHhcC-----CCCEEEEccCC-------CCchHHHHHHHHhcCCCcccEE
Q psy1889 41 ASEKIV--IFSKSYCPYCKMAKDVFQKLK-----VTPKTVELDHR-------DDGDSIQDVLLEITGARSVPRV 100 (127)
Q Consensus 41 ~~~~iv--vf~~~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~-------~~~~~~~~~l~~~~~~~~~P~i 100 (127)
++++++ ++|++|||+|+...+.|+++. ..+..+-|+.+ .+.++..+.+++.++.. +|.+
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~-fpv~ 111 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVD-FPLF 111 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCC-CCCc
Confidence 455443 479999999999887776542 23555555421 12234444444455543 6766
No 217
>KOG1731|consensus
Probab=97.37 E-value=4.9e-05 Score=59.75 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=45.3
Q ss_pred HHHHHhhCCCc--EEE-EEeCCChhHHHHHHHHHhcCCC---C-EEEEccCCCCchHHHHHHHHhcCCCcccEE
Q psy1889 34 QFVQDLIASEK--IVI-FSKSYCPYCKMAKDVFQKLKVT---P-KTVELDHRDDGDSIQDVLLEITGARSVPRV 100 (127)
Q Consensus 34 ~~~~~~~~~~~--ivv-f~~~~Cp~C~~~~~~l~~~~i~---~-~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i 100 (127)
..++..+.+.+ ..| |+++|||+|++..|.+++++.+ + ..+.|...+...+....+.+.++++.+|++
T Consensus 47 ~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptl 120 (606)
T KOG1731|consen 47 DTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTL 120 (606)
T ss_pred hhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCcee
Confidence 44555543332 222 9999999999999999997642 2 233333333333445678999999999999
No 218
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.29 E-value=0.0027 Score=41.47 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=54.0
Q ss_pred chhhHHHHHHHcCC-CCCCChhHHHHHHHhhCC-CcEEEEEe---CCChhHHHHHHHHHhcC-----CCCEEEEccCCCC
Q psy1889 11 FGLKTSFLETLGAS-SKVMNPASKQFVQDLIAS-EKIVIFSK---SYCPYCKMAKDVFQKLK-----VTPKTVELDHRDD 80 (127)
Q Consensus 11 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~ivvf~~---~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~~~ 80 (127)
-.++..++..+... -+.++. ..+...+.. ...++|.+ ..+|.+..+.-+|.++. .++....++.+.+
T Consensus 4 ~~~~~~l~~rl~~~g~~~~~~---~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~ 80 (132)
T PRK11509 4 DTPFDALWQRMLARGWTPVSE---SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS 80 (132)
T ss_pred CCccHHHHHHHHHcCCCcccc---ccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 34555666665552 122333 233333333 33455554 34666666665665542 2344555555543
Q ss_pred chHHHHHHHHhcCCCcccEE--EECCeEEeecH
Q psy1889 81 GDSIQDVLLEITGARSVPRV--FVNGKFIGGGT 111 (127)
Q Consensus 81 ~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~~ 111 (127)
++++.++|+.++|++ |.+|+.++...
T Consensus 81 -----~~LA~~fgV~siPTLl~FkdGk~v~~i~ 108 (132)
T PRK11509 81 -----EAIGDRFGVFRFPATLVFTGGNYRGVLN 108 (132)
T ss_pred -----HHHHHHcCCccCCEEEEEECCEEEEEEe
Confidence 569999999999999 88999876553
No 219
>smart00594 UAS UAS domain.
Probab=97.17 E-value=0.0037 Score=40.04 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=40.7
Q ss_pred HHHHHHhhCCC-cEEE-EEeCCChhHHHHHH-HHHhc------CCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE-EE
Q psy1889 33 KQFVQDLIASE-KIVI-FSKSYCPYCKMAKD-VFQKL------KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV-FV 102 (127)
Q Consensus 33 ~~~~~~~~~~~-~ivv-f~~~~Cp~C~~~~~-~l~~~------~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i-~~ 102 (127)
.+.++.+.+.. .+.| ++++||++|+...+ +|..- .-.|....++.... + ...+.+.+++.++|++ ++
T Consensus 17 ~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~--e-g~~l~~~~~~~~~P~~~~l 93 (122)
T smart00594 17 EAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTS--E-GQRVSQFYKLDSFPYVAIV 93 (122)
T ss_pred HHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCCh--h-HHHHHHhcCcCCCCEEEEE
Confidence 34444444443 3444 88999999998665 34332 22455544444322 1 2468889999999999 44
Q ss_pred C
Q psy1889 103 N 103 (127)
Q Consensus 103 ~ 103 (127)
+
T Consensus 94 ~ 94 (122)
T smart00594 94 D 94 (122)
T ss_pred e
Confidence 3
No 220
>PRK10357 putative glutathione S-transferase; Provisional
Probab=97.16 E-value=0.0025 Score=43.84 Aligned_cols=70 Identities=10% Similarity=0.082 Sum_probs=54.6
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE-CCeEEeecHHHHHHHHc
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV-NGKFIGGGTDVKALYEK 119 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~-~g~~igg~~~l~~~~~~ 119 (127)
.+|+.+.||++++++-+|+..+++|+.+.++..... ..+.+.+....+|++.. +|..+.....+..++.+
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~----~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~ 72 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNAD----NGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIEL 72 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCc----hhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHH
Confidence 478889999999999999999999999888764321 23444567899999984 67788888777776654
No 221
>PLN02395 glutathione S-transferase
Probab=97.15 E-value=0.0037 Score=43.38 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=57.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
+.+|+.+.| .+++++-+|.+.+++|+.+.++.... +...+++.+.+....+|++..+|..+..+..+..++.+
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~ 75 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKG-EHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAE 75 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccC-CcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHH
Confidence 577887775 47888889999999999888876432 12234577788899999999999999999998888775
No 222
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=97.15 E-value=0.0066 Score=35.50 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=52.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCC-CcccEEEEC-CeEEeecHHHHHHHH
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGA-RSVPRVFVN-GKFIGGGTDVKALYE 118 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~-~~~P~i~~~-g~~igg~~~l~~~~~ 118 (127)
+.+|..+. .|..++-+|+..+++|+.+.++....... .+++.+.+.. ..+|++..+ |..+.....+..+..
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~-~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa 75 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHK-SPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLA 75 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGG-SHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEeccccccc-chhhhhcccccceeeEEEECCCCEEEcHHHHHHHhC
Confidence 34455454 88899999999999999988886443222 2667777788 999999999 999998888877654
No 223
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.13 E-value=0.0026 Score=42.99 Aligned_cols=65 Identities=22% Similarity=0.411 Sum_probs=33.9
Q ss_pred hhCCCcEEE-EEeCCChhHHHHHH-HHHh------cCCCCEEEEccCCCCchHHHHHHHHhc--------CCCcccEE-E
Q psy1889 39 LIASEKIVI-FSKSYCPYCKMAKD-VFQK------LKVTPKTVELDHRDDGDSIQDVLLEIT--------GARSVPRV-F 101 (127)
Q Consensus 39 ~~~~~~ivv-f~~~~Cp~C~~~~~-~l~~------~~i~~~~i~i~~~~~~~~~~~~l~~~~--------~~~~~P~i-~ 101 (127)
..++++|.| ++++||..|+.+.. .++. ++-.|.-|.+|.++ ++.+...+ |..+.|+. |
T Consensus 34 k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree-----~Pdid~~y~~~~~~~~~~gGwPl~vf 108 (163)
T PF03190_consen 34 KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREE-----RPDIDKIYMNAVQAMSGSGGWPLTVF 108 (163)
T ss_dssp HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT------HHHHHHHHHHHHHHHS---SSEEEE
T ss_pred HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecccc-----CccHHHHHHHHHHHhcCCCCCCceEE
Confidence 345666777 88999999998774 4433 33367777777654 23344443 78889988 5
Q ss_pred E--CCeEEe
Q psy1889 102 V--NGKFIG 108 (127)
Q Consensus 102 ~--~g~~ig 108 (127)
. +|+.+.
T Consensus 109 ltPdg~p~~ 117 (163)
T PF03190_consen 109 LTPDGKPFF 117 (163)
T ss_dssp E-TTS-EEE
T ss_pred ECCCCCeee
Confidence 5 455443
No 224
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.13 E-value=0.0037 Score=37.20 Aligned_cols=61 Identities=26% Similarity=0.462 Sum_probs=39.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhc----C--CCCEEEEccCCCCc--------------------hHHH-----HHHHHhcC
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKL----K--VTPKTVELDHRDDG--------------------DSIQ-----DVLLEITG 93 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~----~--i~~~~i~i~~~~~~--------------------~~~~-----~~l~~~~~ 93 (127)
|.+|+.+.||+|....+.+.+. . +.+..+.+...... .++. .......|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4579999999999999999875 2 23344444332220 1111 22345568
Q ss_pred CCcccEEEECCe
Q psy1889 94 ARSVPRVFVNGK 105 (127)
Q Consensus 94 ~~~~P~i~~~g~ 105 (127)
+.++|+++++|+
T Consensus 81 ~~g~Pt~v~~~~ 92 (98)
T cd02972 81 VTGTPTFVVNGE 92 (98)
T ss_pred CCCCCEEEECCE
Confidence 999999999983
No 225
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=97.12 E-value=0.0044 Score=43.18 Aligned_cols=73 Identities=10% Similarity=0.175 Sum_probs=55.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE-----CC--eEEeecHHHHHHH
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV-----NG--KFIGGGTDVKALY 117 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~-----~g--~~igg~~~l~~~~ 117 (127)
+.+|+.+ ++.|++++-+|++++++|+.+.++.... +...+++.+.+....+|++.. +| ..+..+..+..++
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKG-GQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCccc-ccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 4578766 6999999999999999999988876432 222356777888999999976 45 2577888888776
Q ss_pred Hc
Q psy1889 118 EK 119 (127)
Q Consensus 118 ~~ 119 (127)
.+
T Consensus 80 ~~ 81 (215)
T PRK13972 80 AE 81 (215)
T ss_pred HH
Confidence 54
No 226
>KOG0868|consensus
Probab=97.10 E-value=0.0019 Score=44.25 Aligned_cols=72 Identities=13% Similarity=0.200 Sum_probs=54.1
Q ss_pred EEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHcCC
Q psy1889 48 FSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGE 121 (127)
Q Consensus 48 f~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~~~ 121 (127)
||.+.|..-.++.-.|+ +++|+.+-++-..++.+.-.++++.+.-.+||++.+||..+..+-.+..++++.+
T Consensus 11 YWrSSCswRVRiALaLK--~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 11 YWRSSCSWRVRIALALK--GIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETY 82 (217)
T ss_pred hhcccchHHHHHHHHHc--CCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcC
Confidence 88888887555555554 6677766666554444555678888888999999999999998888888887754
No 227
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.09 E-value=0.00065 Score=53.80 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=38.8
Q ss_pred cEEE-EEeCCChhHHHHHHHHHh------cCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE-EEC
Q psy1889 44 KIVI-FSKSYCPYCKMAKDVFQK------LKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV-FVN 103 (127)
Q Consensus 44 ~ivv-f~~~~Cp~C~~~~~~l~~------~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i-~~~ 103 (127)
+|.+ ||+.||-.|+..++..=. .-.++.....|.-.+..+. .++-+++++-++|++ |.+
T Consensus 476 pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~-~~lLk~~~~~G~P~~~ff~ 542 (569)
T COG4232 476 PVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAI-TALLKRLGVFGVPTYLFFG 542 (569)
T ss_pred cEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHH-HHHHHHcCCCCCCEEEEEC
Confidence 6777 999999999998875521 1124444555544333344 446667899999999 444
No 228
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.09 E-value=0.0045 Score=41.65 Aligned_cols=38 Identities=24% Similarity=0.495 Sum_probs=24.2
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcC-----CCCEEEEccCC
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLK-----VTPKTVELDHR 78 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~ 78 (127)
++..+++ |+++|||.|....+.|.++. ..+..+-|..+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d 67 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSN 67 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecC
Confidence 4444444 99999999998777666543 23455555543
No 229
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.06 E-value=0.0044 Score=40.25 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=31.8
Q ss_pred EEeCCChhHHHHHHHHHhcC-----CCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE
Q psy1889 48 FSKSYCPYCKMAKDVFQKLK-----VTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 48 f~~~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~ 102 (127)
|+++|||+|+...+.|.++. ..+..+-|+.+.. +. ...+.+..+. .+|.+.-
T Consensus 31 ~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~-~~-~~~~~~~~~~-~~p~~~D 87 (149)
T cd02970 31 YRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP-EK-LEAFDKGKFL-PFPVYAD 87 (149)
T ss_pred ECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH-HH-HHHHHHhcCC-CCeEEEC
Confidence 45899999999888887653 2355666665443 12 2244555444 4776543
No 230
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.00 E-value=0.0059 Score=44.02 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=17.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHh
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQK 65 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~ 65 (127)
.|++|+.+.||||++..+.+..
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHH
Confidence 4677999999999998766543
No 231
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.98 E-value=0.0024 Score=43.07 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=34.0
Q ss_pred CCCcEEE-EEeCC-ChhHHHHHHHHHhcCC---CCEEEEccCCCCchHHHHHHHHhcCCCccc
Q psy1889 41 ASEKIVI-FSKSY-CPYCKMAKDVFQKLKV---TPKTVELDHRDDGDSIQDVLLEITGARSVP 98 (127)
Q Consensus 41 ~~~~ivv-f~~~~-Cp~C~~~~~~l~~~~i---~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P 98 (127)
+++.++| ||++| ||+|....+.|.++.- .+..+-|+.+.. ...+.+.+.++...+|
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~--~~~~~f~~~~~~~~~~ 103 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLP--FAQKRFCGAEGLENVI 103 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCH--HHHHHHHHhCCCCCce
Confidence 4445555 99998 9999998887766422 455666665532 2234455555544333
No 232
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.88 E-value=0.0035 Score=40.78 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=24.6
Q ss_pred CCCcEEE-EEeCC-ChhHHHHHHHHHhcCC---CCEEEEccCC
Q psy1889 41 ASEKIVI-FSKSY-CPYCKMAKDVFQKLKV---TPKTVELDHR 78 (127)
Q Consensus 41 ~~~~ivv-f~~~~-Cp~C~~~~~~l~~~~i---~~~~i~i~~~ 78 (127)
+++++++ ||++| ||+|+...+.|.++.- .+..+-|+.+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d 67 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISAD 67 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 4445555 88888 6999998888865422 3455555543
No 233
>KOG4023|consensus
Probab=96.87 E-value=0.001 Score=40.93 Aligned_cols=84 Identities=13% Similarity=0.191 Sum_probs=59.1
Q ss_pred cEEEEEeCCChhHH------HHHHHHHhcCCCCEEEEccCCCCchH-----HHHHHHHhcCCCcccEEEECCeEEeecHH
Q psy1889 44 KIVIFSKSYCPYCK------MAKDVFQKLKVTPKTVELDHRDDGDS-----IQDVLLEITGARSVPRVFVNGKFIGGGTD 112 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~------~~~~~l~~~~i~~~~i~i~~~~~~~~-----~~~~l~~~~~~~~~P~i~~~g~~igg~~~ 112 (127)
.+.+|.++.-+.-. .+..+|+...+.+..+++...+.... ..++.+-..|....|+||.+++..|+++.
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 46677776555432 34457777788999999877643211 12223333467789999999999999999
Q ss_pred HHHHHHcCCcccccC
Q psy1889 113 VKALYEKGELHPLVQ 127 (127)
Q Consensus 113 l~~~~~~~~L~~~L~ 127 (127)
..+..++..|+++|+
T Consensus 83 F~ea~E~ntl~eFL~ 97 (108)
T KOG4023|consen 83 FFEAVEQNTLQEFLG 97 (108)
T ss_pred HHHHHHHHHHHHHHc
Confidence 988889888888774
No 234
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=96.87 E-value=0.021 Score=33.89 Aligned_cols=73 Identities=7% Similarity=-0.062 Sum_probs=49.9
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchH-HHHHHHHh----cCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 47 IFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDS-IQDVLLEI----TGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 47 vf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~-~~~~l~~~----~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
+|+-.--+.|++++-+|+..+++|+.+.++..+.... -.+..... ....++|++..+|..+..+..+..++.+
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~ 80 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIAR 80 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhh
Confidence 3333444788899999999999999888876432110 01112111 1567999999999999998888887654
No 235
>PRK11752 putative S-transferase; Provisional
Probab=96.84 E-value=0.0093 Score=43.18 Aligned_cols=78 Identities=9% Similarity=0.121 Sum_probs=58.9
Q ss_pred hCCCcEEEEEeCCChhHHHHHHHHHhc------CCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEEC----CeEEee
Q psy1889 40 IASEKIVIFSKSYCPYCKMAKDVFQKL------KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN----GKFIGG 109 (127)
Q Consensus 40 ~~~~~ivvf~~~~Cp~C~~~~~~l~~~------~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~----g~~igg 109 (127)
....++.+|+. .+|+|++++-.|+++ +++|+.+.++.... +...+++.+.+....+|++..+ |..+..
T Consensus 40 ~~~~~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~-~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~E 117 (264)
T PRK11752 40 VGKHPLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEG-DQFSSGFVEINPNSKIPALLDRSGNPPIRVFE 117 (264)
T ss_pred CCCCCeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCccc-cccCHHHHhhCCCCCCCEEEeCCCCCCeEEEc
Confidence 34567888885 599999999999997 78898887765332 1224567788889999999875 257888
Q ss_pred cHHHHHHHHc
Q psy1889 110 GTDVKALYEK 119 (127)
Q Consensus 110 ~~~l~~~~~~ 119 (127)
+..+..++.+
T Consensus 118 S~AIl~YL~~ 127 (264)
T PRK11752 118 SGAILLYLAE 127 (264)
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 236
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.003 Score=43.24 Aligned_cols=69 Identities=17% Similarity=0.376 Sum_probs=52.8
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE-CCeEEeecHHHHHHHHcC
Q psy1889 47 IFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV-NGKFIGGGTDVKALYEKG 120 (127)
Q Consensus 47 vf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~-~g~~igg~~~l~~~~~~~ 120 (127)
+|....||+|.+++-++.-++++++..-+.-|++. --.+..|...+|.+.. +|+..+.+-++..+..+.
T Consensus 3 LYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~-----Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~ 72 (215)
T COG2999 3 LYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEE-----TPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDEL 72 (215)
T ss_pred eeEeccChHHHHHHHHhhccCCChhhheeccCccc-----ChhhhhcccccceEEccccccchhhhHHHHHHHHh
Confidence 57779999999999999999999987776665431 1233448889999965 688888887777766543
No 237
>KOG1422|consensus
Probab=96.74 E-value=0.011 Score=41.34 Aligned_cols=65 Identities=17% Similarity=0.351 Sum_probs=53.5
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 51 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 51 ~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
-.||+|++.-..|...++.|....|+.... .+++.+..+.+.+|.+..+++.+...+.+...+++
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~k----p~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee 83 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRK----PEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEE 83 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCC----cHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHH
Confidence 359999999999999999888777766544 35677888999999999999999888888777654
No 238
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.56 E-value=0.011 Score=38.10 Aligned_cols=26 Identities=15% Similarity=0.487 Sum_probs=18.6
Q ss_pred CCCcEEE-EEeCCChh-HHHHHHHHHhc
Q psy1889 41 ASEKIVI-FSKSYCPY-CKMAKDVFQKL 66 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~-C~~~~~~l~~~ 66 (127)
+++.++| |+++||++ |....+.|+++
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~ 48 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQA 48 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHH
Confidence 3444444 99999998 99877777653
No 239
>PRK10542 glutathionine S-transferase; Provisional
Probab=96.54 E-value=0.013 Score=40.20 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=52.3
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE-CCeEEeecHHHHHHHHc
Q psy1889 46 VIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV-NGKFIGGGTDVKALYEK 119 (127)
Q Consensus 46 vvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~-~g~~igg~~~l~~~~~~ 119 (127)
.+|+.+. +.+.++.-.|++.+++|+.+.++.........+++.+.+....+|++.. +|..+..+..+..++.+
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~ 75 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLAD 75 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHH
Confidence 3565543 3467777889999999998887764321111245777788899999976 77889988888887754
No 240
>KOG0191|consensus
Probab=96.52 E-value=0.0017 Score=49.36 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=39.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCC------CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeE
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKV------TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKF 106 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i------~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~ 106 (127)
.++.|++|||++|+...+.+++... .+....++.+ ....+...+++..+|++ |..|..
T Consensus 165 ~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~-----~~~~~~~~~~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 165 WLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT-----VHKSLASRLEVRGYPTLKLFPPGEE 230 (383)
T ss_pred eEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc-----hHHHHhhhhcccCCceEEEecCCCc
Confidence 3555999999999999888877543 2333333332 23457788899999999 445544
No 241
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.51 E-value=0.017 Score=37.62 Aligned_cols=36 Identities=11% Similarity=0.293 Sum_probs=23.0
Q ss_pred CcEEE-EE-eCCChhHHHHHHHHHhcC-----CCCEEEEccCC
Q psy1889 43 EKIVI-FS-KSYCPYCKMAKDVFQKLK-----VTPKTVELDHR 78 (127)
Q Consensus 43 ~~ivv-f~-~~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~ 78 (127)
+.+++ |+ ++|||.|....+.|.++. ..+..+-|+.+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 71 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD 71 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC
Confidence 44444 65 899999998877776542 23455555544
No 242
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.43 E-value=0.028 Score=35.29 Aligned_cols=59 Identities=19% Similarity=0.387 Sum_probs=33.2
Q ss_pred CCCcEEE-EEeC-CChhHHHHHHHHHhcC-----CCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE
Q psy1889 41 ASEKIVI-FSKS-YCPYCKMAKDVFQKLK-----VTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 41 ~~~~ivv-f~~~-~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~ 102 (127)
++.+++| |+++ |||+|....+.|+++. ..+..+-|..+.. +....+.+..+ ..+|.+.-
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~--~~~~~~~~~~~-~~~~~~~D 89 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP--EEIKQFLEEYG-LPFPVLSD 89 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH--HHHHHHHHHHT-CSSEEEEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc--cchhhhhhhhc-cccccccC
Confidence 4555555 7877 9999998777776532 2345555555432 22233444434 33555544
No 243
>KOG0867|consensus
Probab=96.42 E-value=0.019 Score=40.66 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=63.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
+..+|+.+.-+.|+++.-.++..++.++.+.++... +++..+++.+.+...++|++.-+|-.+..+..+..+..+
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~-ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ 76 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVK-GEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAE 76 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccc-cccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHH
Confidence 356899999999999999999999999998777653 346667788888999999999999999988888877665
No 244
>KOG0913|consensus
Probab=96.39 E-value=0.0015 Score=46.30 Aligned_cols=65 Identities=17% Similarity=0.361 Sum_probs=47.8
Q ss_pred HHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhc-------CCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECC
Q psy1889 34 QFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKL-------KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNG 104 (127)
Q Consensus 34 ~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~-------~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g 104 (127)
+..+.++++.=.+.|+++|||.|..-.+.+++. ++...++++...+. +.-++-+...|+| ..+|
T Consensus 32 enw~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg-------LsGRF~vtaLptIYHvkDG 104 (248)
T KOG0913|consen 32 ENWKELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG-------LSGRFLVTALPTIYHVKDG 104 (248)
T ss_pred cchhhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc-------cceeeEEEecceEEEeecc
Confidence 334445555555669999999999999999885 34566777777654 6667778899999 4477
Q ss_pred e
Q psy1889 105 K 105 (127)
Q Consensus 105 ~ 105 (127)
+
T Consensus 105 e 105 (248)
T KOG0913|consen 105 E 105 (248)
T ss_pred c
Confidence 6
No 245
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.37 E-value=0.025 Score=36.37 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=22.9
Q ss_pred CCcEEE-EE-eCCChhHHHHHHHHHhcC-----CCCEEEEccCC
Q psy1889 42 SEKIVI-FS-KSYCPYCKMAKDVFQKLK-----VTPKTVELDHR 78 (127)
Q Consensus 42 ~~~ivv-f~-~~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~ 78 (127)
++.++| || +.|||.|....+.|.++. ..+..+.|..+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d 66 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD 66 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 445555 77 589999998776665432 23455555554
No 246
>KOG0914|consensus
Probab=96.20 E-value=0.0037 Score=44.10 Aligned_cols=59 Identities=25% Similarity=0.421 Sum_probs=44.5
Q ss_pred EEeCCChhHHHHHHHHHhcCCC-------CEEEEccCCCCchHHHHHHHHhcC------CCcccEE--EECCeEEeecHH
Q psy1889 48 FSKSYCPYCKMAKDVFQKLKVT-------PKTVELDHRDDGDSIQDVLLEITG------ARSVPRV--FVNGKFIGGGTD 112 (127)
Q Consensus 48 f~~~~Cp~C~~~~~~l~~~~i~-------~~~i~i~~~~~~~~~~~~l~~~~~------~~~~P~i--~~~g~~igg~~~ 112 (127)
|++.|.|.|....|.+.++.++ |-.+|+..-++ .+.+++ .+++||+ |.+|+++....+
T Consensus 151 Ffa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd-------~a~kfris~s~~srQLPT~ilFq~gkE~~RrP~ 223 (265)
T KOG0914|consen 151 FFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPD-------VAAKFRISLSPGSRQLPTYILFQKGKEVSRRPD 223 (265)
T ss_pred EEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcC-------hHHheeeccCcccccCCeEEEEccchhhhcCcc
Confidence 9999999999999999887664 44677776554 444443 5789998 789997766554
Q ss_pred H
Q psy1889 113 V 113 (127)
Q Consensus 113 l 113 (127)
+
T Consensus 224 v 224 (265)
T KOG0914|consen 224 V 224 (265)
T ss_pred c
Confidence 3
No 247
>PTZ00057 glutathione s-transferase; Provisional
Probab=96.20 E-value=0.051 Score=37.61 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=55.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHH--HHHHH--HhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSI--QDVLL--EITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~--~~~l~--~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
.+++|+.+-.+.|+.++-+|+..|++|+.+.++... ++. .+++. +.+.-..+|++..+|..+..+..+..++.+
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~--~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~ 81 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENG--DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSK 81 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccc--hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence 377888788889999999999999999998775321 111 11122 356788999999999999988888887654
No 248
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=96.18 E-value=0.05 Score=31.68 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 51 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 51 ~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
+.+|+|-++.-+|+-.+++|+.+.... +. ......+|.+..+|+.|+++..+.+.+++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n-~~----------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~ 71 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNN-PW----------RSPTGKLPALLTSGTKISGPEKIIEYLRK 71 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCC-CC----------CCCCCccCEEEECCEEecChHHHHHHHHH
Confidence 557999999999999999997764332 11 12456799999999999999999887754
No 249
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.10 E-value=0.031 Score=35.89 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=24.4
Q ss_pred CCCcEEE-EE-eCCChhHHHHHHHHHhcC-----CCCEEEEccCC
Q psy1889 41 ASEKIVI-FS-KSYCPYCKMAKDVFQKLK-----VTPKTVELDHR 78 (127)
Q Consensus 41 ~~~~ivv-f~-~~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~ 78 (127)
.+++++| || +.|||.|....+.|.++. -.+..+-|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4444444 67 689999999887776632 23555555544
No 250
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.055 Score=38.10 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=47.2
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhcCC--CCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEee
Q psy1889 41 ASEKIVIFSKSYCPYCKMAKDVFQKLKV--TPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGG 109 (127)
Q Consensus 41 ~~~~ivvf~~~~Cp~C~~~~~~l~~~~i--~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg 109 (127)
....|.+|...+|..|-..-+.|++.|. .+..++..... ..+-+.++-++|.+|+||+.+.+
T Consensus 9 ~~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~-------f~~~~~~V~SvP~Vf~DGel~~~ 72 (265)
T COG5494 9 IEMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPP-------FLAFEKGVISVPSVFIDGELVYA 72 (265)
T ss_pred hheEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCCh-------HHHhhcceeecceEEEcCeEEEc
Confidence 3456788999999999999999999887 45556555433 24444488999999999996643
No 251
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=95.99 E-value=0.087 Score=30.90 Aligned_cols=58 Identities=9% Similarity=0.123 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHH
Q psy1889 51 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYE 118 (127)
Q Consensus 51 ~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~ 118 (127)
+..+.|.++.-+|+..+++|+.++..... . ......+|.+..+|+.|+++..+..++.
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~--------~--~~P~GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAE--------F--MSPSGKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCcc--------c--cCCCCcccEEEECCEEEeCHHHHHHHHh
Confidence 56778899999999999999988543211 0 1124789999889999999988887764
No 252
>KOG1672|consensus
Probab=95.89 E-value=0.021 Score=39.56 Aligned_cols=77 Identities=26% Similarity=0.460 Sum_probs=55.0
Q ss_pred HHHHHHHhhCCCcEEE-EEeCCChhHHHHHHHHHhcCCC---CEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCe
Q psy1889 32 SKQFVQDLIASEKIVI-FSKSYCPYCKMAKDVFQKLKVT---PKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGK 105 (127)
Q Consensus 32 ~~~~~~~~~~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~---~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~ 105 (127)
-.+++....++.+||. |+.+.-.-|+-+-..|+.++-. -..+.|+... .+-+..+.++..+|++ |.+|.
T Consensus 74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~-----~PFlv~kL~IkVLP~v~l~k~g~ 148 (211)
T KOG1672|consen 74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEK-----APFLVTKLNIKVLPTVALFKNGK 148 (211)
T ss_pred HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEeccc-----CceeeeeeeeeEeeeEEEEEcCE
Confidence 3566666667777777 9999999999888888776543 3344444322 2458889999999999 88887
Q ss_pred ---EEeecHHH
Q psy1889 106 ---FIGGGTDV 113 (127)
Q Consensus 106 ---~igg~~~l 113 (127)
.|.|+.+|
T Consensus 149 ~~D~iVGF~dL 159 (211)
T KOG1672|consen 149 TVDYVVGFTDL 159 (211)
T ss_pred EEEEEeeHhhc
Confidence 56666654
No 253
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=95.80 E-value=0.054 Score=37.30 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=37.8
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcC-----CCCEEEEccCC-------CCchHHHHHHHHhcCCCcccEE--E-ECC
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLK-----VTPKTVELDHR-------DDGDSIQDVLLEITGARSVPRV--F-VNG 104 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~-------~~~~~~~~~l~~~~~~~~~P~i--~-~~g 104 (127)
+++.++| |+|+||++|.. -+.|+++. -.+.++-+.-+ ...+++.....+.++. ++|.+ . ++|
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~Fpv~~k~dvnG 101 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-TFPMFSKIEVNG 101 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-CceeEEEEccCC
Confidence 3444444 99999999963 55555532 23455554321 1223333333335565 48877 2 456
Q ss_pred eEEeecHHHHHHHH
Q psy1889 105 KFIGGGTDVKALYE 118 (127)
Q Consensus 105 ~~igg~~~l~~~~~ 118 (127)
+. .+.+..++.
T Consensus 102 ~~---~~pl~~~Lk 112 (183)
T PRK10606 102 EG---RHPLYQKLI 112 (183)
T ss_pred CC---CCHHHHHHH
Confidence 52 234455544
No 254
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=95.71 E-value=0.059 Score=36.36 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=24.6
Q ss_pred CCCcEEE-EE-eCCChhHHHHHHHHHhcC-----CCCEEEEccCCC
Q psy1889 41 ASEKIVI-FS-KSYCPYCKMAKDVFQKLK-----VTPKTVELDHRD 79 (127)
Q Consensus 41 ~~~~ivv-f~-~~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~~ 79 (127)
+++.++| || ++|||.|....+.|.++. ..+..+-|+.++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 3444555 66 799999999887776542 234455555443
No 255
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.67 E-value=0.029 Score=40.84 Aligned_cols=63 Identities=16% Similarity=0.301 Sum_probs=42.3
Q ss_pred EEE-EEeCCChhHHHHHHHHHhcCC-----CCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeecHHHHH
Q psy1889 45 IVI-FSKSYCPYCKMAKDVFQKLKV-----TPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGGTDVKA 115 (127)
Q Consensus 45 ivv-f~~~~Cp~C~~~~~~l~~~~i-----~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~~~l~~ 115 (127)
||| +|.+.++.|..+-..|..++- +|..+.....+ +...+....+|++ |.+|+.++.+..+..
T Consensus 149 VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~--------~~~~f~~~~LPtllvYk~G~l~~~~V~l~~ 219 (265)
T PF02114_consen 149 VVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP--------ASENFPDKNLPTLLVYKNGDLIGNFVGLTD 219 (265)
T ss_dssp EEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC--------TTTTS-TTC-SEEEEEETTEEEEEECTGGG
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC--------cccCCcccCCCEEEEEECCEEEEeEEehHH
Confidence 555 889999999999999988653 33333333322 4456788899999 889998887765443
No 256
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=95.56 E-value=0.062 Score=35.32 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=54.7
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCC----CcccEEEECCeEEeecH---HH
Q psy1889 41 ASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGA----RSVPRVFVNGKFIGGGT---DV 113 (127)
Q Consensus 41 ~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~----~~~P~i~~~g~~igg~~---~l 113 (127)
...++++|..|.|+=|+.=.+.|+..++.+..+..+. ...+++++|+ .+==|..++|..|-|.. ++
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d-------~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI 96 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDD-------FLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAI 96 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCc-------HHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHH
Confidence 5677999999999999999999998888777666554 3457776664 24446699999998864 55
Q ss_pred HHHHHcCC
Q psy1889 114 KALYEKGE 121 (127)
Q Consensus 114 ~~~~~~~~ 121 (127)
.++++++.
T Consensus 97 ~~ll~~~p 104 (149)
T COG3019 97 ARLLAEKP 104 (149)
T ss_pred HHHHhCCC
Confidence 56655543
No 257
>KOG1695|consensus
Probab=95.55 E-value=0.12 Score=36.36 Aligned_cols=72 Identities=11% Similarity=0.056 Sum_probs=59.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
...+++-+..+.|..++.+|.-.+++|+...+...+. ...++....-..+|++.+||..+..+..+.+++..
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~----w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLAr 74 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA----WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLAR 74 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc----hhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHH
Confidence 3566667899999999999999999999999998652 34466666788999999999999999988887653
No 258
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=95.53 E-value=0.056 Score=37.11 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=18.4
Q ss_pred CCCcEEE-EE-eCCChhHHHHHHHHHh
Q psy1889 41 ASEKIVI-FS-KSYCPYCKMAKDVFQK 65 (127)
Q Consensus 41 ~~~~ivv-f~-~~~Cp~C~~~~~~l~~ 65 (127)
+++.++| || +.|||.|....+.|.+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~ 56 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLAD 56 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHH
Confidence 4555555 66 8999999997777654
No 259
>PRK13190 putative peroxiredoxin; Provisional
Probab=95.51 E-value=0.029 Score=39.03 Aligned_cols=25 Identities=12% Similarity=0.412 Sum_probs=18.3
Q ss_pred CCCcEEE--EEeCCChhHHHHHHHHHh
Q psy1889 41 ASEKIVI--FSKSYCPYCKMAKDVFQK 65 (127)
Q Consensus 41 ~~~~ivv--f~~~~Cp~C~~~~~~l~~ 65 (127)
++..++| |++.|||.|....+.|.+
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~ 52 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSR 52 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHH
Confidence 4444554 789999999987776655
No 260
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=95.46 E-value=0.096 Score=34.42 Aligned_cols=38 Identities=11% Similarity=0.270 Sum_probs=22.2
Q ss_pred CCCcEEE-EEe-CCChhHHHHHHHHHhc-----CCCCEEEEccCC
Q psy1889 41 ASEKIVI-FSK-SYCPYCKMAKDVFQKL-----KVTPKTVELDHR 78 (127)
Q Consensus 41 ~~~~ivv-f~~-~~Cp~C~~~~~~l~~~-----~i~~~~i~i~~~ 78 (127)
+++.++| ||+ .|||.|....+.|.+. +-.+..+.|+.+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d 73 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD 73 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4555555 775 4789998766555432 123555666554
No 261
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.38 E-value=0.029 Score=35.68 Aligned_cols=34 Identities=15% Similarity=0.541 Sum_probs=28.4
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEcc
Q psy1889 43 EKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELD 76 (127)
Q Consensus 43 ~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~ 76 (127)
..+++|+.|-|+-|+.+..+|+++..+|+...|+
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVN 36 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVN 36 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEE
Confidence 3467799999999999999999998888765544
No 262
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=95.05 E-value=0.15 Score=30.96 Aligned_cols=64 Identities=14% Similarity=0.335 Sum_probs=34.1
Q ss_pred EEEEeC-CChhHH------HHHHHHHh----c----CCCCEEEEccCCCCchHHHHHHHHhc--CCCcccEEEECCeEEe
Q psy1889 46 VIFSKS-YCPYCK------MAKDVFQK----L----KVTPKTVELDHRDDGDSIQDVLLEIT--GARSVPRVFVNGKFIG 108 (127)
Q Consensus 46 vvf~~~-~Cp~C~------~~~~~l~~----~----~i~~~~i~i~~~~~~~~~~~~l~~~~--~~~~~P~i~~~g~~ig 108 (127)
+||+|. -|+.|. ..-.||+. . .+.++.+||...++..+ .+.++++. ...-+|.+.++|+.||
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~-~~~~a~~I~ede~fYPlV~i~~eiV~ 79 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDH-DQQFAERILEDELFYPLVVINDEIVA 79 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HH-HHHHHHHHHTTSS-SSEEEETTEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHH-HHHHHHHHHhcccccceEEECCEEEe
Confidence 467774 488774 34445533 1 24567888887665432 23333332 4567999999999988
Q ss_pred ec
Q psy1889 109 GG 110 (127)
Q Consensus 109 g~ 110 (127)
.-
T Consensus 80 EG 81 (93)
T PF07315_consen 80 EG 81 (93)
T ss_dssp ES
T ss_pred cC
Confidence 53
No 263
>KOG4244|consensus
Probab=94.62 E-value=0.083 Score=38.36 Aligned_cols=69 Identities=12% Similarity=0.303 Sum_probs=51.9
Q ss_pred hhCCCcEEEEEe---CCC----hhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecH
Q psy1889 39 LIASEKIVIFSK---SYC----PYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGT 111 (127)
Q Consensus 39 ~~~~~~ivvf~~---~~C----p~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~ 111 (127)
..+..-|.+|.- ..| |+|-++.-+|...+++|+.++-.. ..++..+++|-|-.||++|.+++
T Consensus 40 d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~-----------~~rSr~G~lPFIELNGe~iaDS~ 108 (281)
T KOG4244|consen 40 DYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL-----------KRRSRNGTLPFIELNGEHIADSD 108 (281)
T ss_pred ccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc-----------eeeccCCCcceEEeCCeeccccH
Confidence 344555666553 334 789999999999999999887664 23346678999999999999998
Q ss_pred HHHHHHH
Q psy1889 112 DVKALYE 118 (127)
Q Consensus 112 ~l~~~~~ 118 (127)
-+...++
T Consensus 109 ~I~~~L~ 115 (281)
T KOG4244|consen 109 LIEDRLR 115 (281)
T ss_pred HHHHHHH
Confidence 7665554
No 264
>PRK13599 putative peroxiredoxin; Provisional
Probab=94.45 E-value=0.094 Score=36.96 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=18.5
Q ss_pred CCCcEEE--EEeCCChhHHHHHHHHHhc
Q psy1889 41 ASEKIVI--FSKSYCPYCKMAKDVFQKL 66 (127)
Q Consensus 41 ~~~~ivv--f~~~~Cp~C~~~~~~l~~~ 66 (127)
++..+++ |++.|||.|....+.|.++
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~ 54 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARK 54 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHH
Confidence 4444443 8899999999877666554
No 265
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=94.22 E-value=0.08 Score=37.07 Aligned_cols=67 Identities=21% Similarity=0.342 Sum_probs=36.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC--CE--EEEcc-------CCC----CchHHHHHHHHhcC--CCcccEEEECCe-E
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVT--PK--TVELD-------HRD----DGDSIQDVLLEITG--ARSVPRVFVNGK-F 106 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~--~~--~i~i~-------~~~----~~~~~~~~l~~~~~--~~~~P~i~~~g~-~ 106 (127)
|-+|++.+|..|..+-++|.++.-+ +- -.+|+ +|+ .-.+.++..+...+ .-.+|++++||. .
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 5679999999999999999886432 11 12221 111 11234555555554 456999999986 5
Q ss_pred EeecH
Q psy1889 107 IGGGT 111 (127)
Q Consensus 107 igg~~ 111 (127)
..|++
T Consensus 82 ~~g~~ 86 (202)
T PF06764_consen 82 RVGSD 86 (202)
T ss_dssp EETT-
T ss_pred eeccC
Confidence 55554
No 266
>KOG3414|consensus
Probab=94.00 E-value=0.23 Score=32.26 Aligned_cols=58 Identities=19% Similarity=0.403 Sum_probs=40.4
Q ss_pred EEE-EEeCCChhHHHHHHHHHhcCC---CCEEEE-ccCCCCchHHHHHHHHhcCCCcccEE--EECCeEE
Q psy1889 45 IVI-FSKSYCPYCKMAKDVFQKLKV---TPKTVE-LDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFI 107 (127)
Q Consensus 45 ivv-f~~~~Cp~C~~~~~~l~~~~i---~~~~i~-i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~i 107 (127)
+|+ |+..|-|.|-.+-.+|.+..- +|..+- ++.++ .+.+.+-++....|++ |.+++++
T Consensus 26 vViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdide-----V~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 26 VVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDE-----VPDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred EEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecch-----hhhhhhhhcccCCceEEEEEcCceE
Confidence 444 999999999999999988643 454332 22222 3457788888888888 6677644
No 267
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=93.90 E-value=0.16 Score=35.30 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=17.7
Q ss_pred CcEEE--EEeCCChhHHHHHHHHHhc
Q psy1889 43 EKIVI--FSKSYCPYCKMAKDVFQKL 66 (127)
Q Consensus 43 ~~ivv--f~~~~Cp~C~~~~~~l~~~ 66 (127)
..+++ |+++|||.|....+.|.++
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~ 51 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKL 51 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHH
Confidence 34444 8899999999877766553
No 268
>PRK13189 peroxiredoxin; Provisional
Probab=93.76 E-value=0.16 Score=35.88 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=18.3
Q ss_pred CCCcEEE--EEeCCChhHHHHHHHHHhc
Q psy1889 41 ASEKIVI--FSKSYCPYCKMAKDVFQKL 66 (127)
Q Consensus 41 ~~~~ivv--f~~~~Cp~C~~~~~~l~~~ 66 (127)
++..+++ |++.|||.|....+.|.++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~ 61 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKR 61 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 4544544 7899999999876666553
No 269
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.62 E-value=0.14 Score=33.63 Aligned_cols=27 Identities=30% Similarity=0.626 Sum_probs=20.4
Q ss_pred HhcCCCcccEEEECCeEEeecHHHHHH
Q psy1889 90 EITGARSVPRVFVNGKFIGGGTDVKAL 116 (127)
Q Consensus 90 ~~~~~~~~P~i~~~g~~igg~~~l~~~ 116 (127)
+..++.++|++++||+.+.+..++..+
T Consensus 130 ~~~~i~~tPt~~inG~~~~~~~~~~~l 156 (162)
T PF13462_consen 130 RQLGITGTPTFFINGKYVVGPYTIEEL 156 (162)
T ss_dssp HHHT-SSSSEEEETTCEEETTTSHHHH
T ss_pred HHcCCccccEEEECCEEeCCCCCHHHH
Confidence 345799999999999999876655554
No 270
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=93.57 E-value=0.41 Score=33.01 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=18.9
Q ss_pred CCCcEEE-EE-eCCChhHHHHHHHHHhc
Q psy1889 41 ASEKIVI-FS-KSYCPYCKMAKDVFQKL 66 (127)
Q Consensus 41 ~~~~ivv-f~-~~~Cp~C~~~~~~l~~~ 66 (127)
+++.+++ |+ +.|||.|....+.|.+.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~ 57 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADH 57 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHH
Confidence 4445555 66 89999999977777654
No 271
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.41 E-value=1.2 Score=27.95 Aligned_cols=72 Identities=21% Similarity=0.383 Sum_probs=44.6
Q ss_pred HHHHHhhCCCcEEEEEe-CCChhHHHHHHHHHhc----C--CCCEEEEccCCCCchHHHHHHHHhcCC-CcccEE--EEC
Q psy1889 34 QFVQDLIASEKIVIFSK-SYCPYCKMAKDVFQKL----K--VTPKTVELDHRDDGDSIQDVLLEITGA-RSVPRV--FVN 103 (127)
Q Consensus 34 ~~~~~~~~~~~ivvf~~-~~Cp~C~~~~~~l~~~----~--i~~~~i~i~~~~~~~~~~~~l~~~~~~-~~~P~i--~~~ 103 (127)
+.+.+.....++++|=. ++||-...+..-+++. . +++-.+++-... .+-.+++..+|+ -.=|++ +.+
T Consensus 11 ~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R---~vSn~IAe~~~V~HeSPQ~ili~~ 87 (105)
T PF11009_consen 11 EEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYR---PVSNAIAEDFGVKHESPQVILIKN 87 (105)
T ss_dssp HHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGH---HHHHHHHHHHT----SSEEEEEET
T ss_pred HHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCc---hhHHHHHHHhCCCcCCCcEEEEEC
Confidence 33434445677888765 5599999988877663 2 566677766543 677889999996 356887 668
Q ss_pred CeEEe
Q psy1889 104 GKFIG 108 (127)
Q Consensus 104 g~~ig 108 (127)
|+.+-
T Consensus 88 g~~v~ 92 (105)
T PF11009_consen 88 GKVVW 92 (105)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 98664
No 272
>PRK13191 putative peroxiredoxin; Provisional
Probab=93.33 E-value=0.22 Score=35.06 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=24.8
Q ss_pred CCCcEEE--EEeCCChhHHHHHHHHHhcC-----CCCEEEEccCCC
Q psy1889 41 ASEKIVI--FSKSYCPYCKMAKDVFQKLK-----VTPKTVELDHRD 79 (127)
Q Consensus 41 ~~~~ivv--f~~~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~~ 79 (127)
+++.++| |+++|||.|....+.|.++. .....+-++.|.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds 77 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS 77 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4544554 78999999999777776542 233455555443
No 273
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=92.91 E-value=0.11 Score=34.66 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=18.8
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHh
Q psy1889 42 SEKIVIFSKSYCPYCKMAKDVFQK 65 (127)
Q Consensus 42 ~~~ivvf~~~~Cp~C~~~~~~l~~ 65 (127)
...|+.|+...||+|+.+.+.+..
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 344666999999999998877754
No 274
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.79 E-value=1.1 Score=27.45 Aligned_cols=68 Identities=13% Similarity=0.238 Sum_probs=40.9
Q ss_pred CCcEEEEEeCC-ChhHH------HHHHHHHhc--------CCCCEEEEccCCCCchHHHHHHHHhc--CCCcccEEEECC
Q psy1889 42 SEKIVIFSKSY-CPYCK------MAKDVFQKL--------KVTPKTVELDHRDDGDSIQDVLLEIT--GARSVPRVFVNG 104 (127)
Q Consensus 42 ~~~ivvf~~~~-Cp~C~------~~~~~l~~~--------~i~~~~i~i~~~~~~~~~~~~l~~~~--~~~~~P~i~~~g 104 (127)
..+++||++.. |..|. ..-.||+.. ...|+.++|...+...+. ..++.+. +-.-+|.+.+++
T Consensus 4 ~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~-~~~aekI~~dey~YPlivved 82 (106)
T COG4837 4 EAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHD-LQFAEKIEQDEYFYPLIVVED 82 (106)
T ss_pred eeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHH-HHHHHHHhcccccceEEEEcc
Confidence 34677898854 77774 344555442 235667888554443333 3344332 345689999999
Q ss_pred eEEeec
Q psy1889 105 KFIGGG 110 (127)
Q Consensus 105 ~~igg~ 110 (127)
+.|+.-
T Consensus 83 eiVaeG 88 (106)
T COG4837 83 EIVAEG 88 (106)
T ss_pred eEeecC
Confidence 988743
No 275
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=92.45 E-value=0.2 Score=32.83 Aligned_cols=21 Identities=19% Similarity=0.478 Sum_probs=15.2
Q ss_pred cEEEEEeCCChhHHHHHHHHH
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQ 64 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~ 64 (127)
.|++|....||+|+++.+.+.
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~~ 35 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEELE 35 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHHH
T ss_pred EEEEEECCCCHhHHHHHHHHh
Confidence 355599999999998766553
No 276
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.08 E-value=0.49 Score=37.88 Aligned_cols=52 Identities=8% Similarity=0.125 Sum_probs=36.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCC---C--CEEEEccCCCCchHHHHHHHHhcCCCcccEEEE
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKV---T--PKTVELDHRDDGDSIQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i---~--~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~ 102 (127)
.+++|+.+.|.+|..++.+|+++.- . +..++...+ +.+++.+++..+|++.+
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~-------~~~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEE-------PESETLPKITKLPTVAL 425 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccc-------hhhHhhcCCCcCCEEEE
Confidence 3555888899999999999988642 2 333333322 34777889989999944
No 277
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=91.86 E-value=0.49 Score=29.48 Aligned_cols=68 Identities=22% Similarity=0.422 Sum_probs=42.9
Q ss_pred EEEeCCChhHHHHHHHHHhcCC--CCEEEEccCCCCchHHHHHHHHhcC-----CCcccEEEECCe-EEeecHHHHHHHH
Q psy1889 47 IFSKSYCPYCKMAKDVFQKLKV--TPKTVELDHRDDGDSIQDVLLEITG-----ARSVPRVFVNGK-FIGGGTDVKALYE 118 (127)
Q Consensus 47 vf~~~~Cp~C~~~~~~l~~~~i--~~~~i~i~~~~~~~~~~~~l~~~~~-----~~~~P~i~~~g~-~igg~~~l~~~~~ 118 (127)
||+-.+||.|.....++..... .+..+++...++ .++.+..+ ..+...+..+|+ ...|++.+..+..
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPD-----QALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLR 75 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhh-----hhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHH
Confidence 4678899999999999999864 456666633221 11122222 223333344776 8889988877765
Q ss_pred c
Q psy1889 119 K 119 (127)
Q Consensus 119 ~ 119 (127)
.
T Consensus 76 ~ 76 (114)
T PF04134_consen 76 R 76 (114)
T ss_pred H
Confidence 4
No 278
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=91.85 E-value=0.86 Score=29.41 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCCCEEEEccCCCC----chHHHHHHHHhcCCCcccEEEECCeE--EeecHHHHHH
Q psy1889 58 MAKDVFQKLKVTPKTVELDHRDD----GDSIQDVLLEITGARSVPRVFVNGKF--IGGGTDVKAL 116 (127)
Q Consensus 58 ~~~~~l~~~~i~~~~i~i~~~~~----~~~~~~~l~~~~~~~~~P~i~~~g~~--igg~~~l~~~ 116 (127)
....+|++.++.+..+++..++. ...+.+ +-+..|...+|.+++||+. .|.+....++
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~-~L~~~G~e~LPitlVdGeiv~~G~YPt~eEl 94 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQ-LLQTEGAEALPITLVDGEIVKTGRYPTNEEL 94 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHH-HHHHH-GGG-SEEEETTEEEEESS---HHHH
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHH-HHHHcCcccCCEEEECCEEEEecCCCCHHHH
Confidence 45677888899999999998875 223333 3344589999999999994 4555544444
No 279
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=91.67 E-value=2.3 Score=26.97 Aligned_cols=63 Identities=8% Similarity=0.105 Sum_probs=36.4
Q ss_pred HHHHHhhCCCcE-EE-EEeC----CChhHHH------HHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE-
Q psy1889 34 QFVQDLIASEKI-VI-FSKS----YCPYCKM------AKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV- 100 (127)
Q Consensus 34 ~~~~~~~~~~~i-vv-f~~~----~Cp~C~~------~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i- 100 (127)
+.++.+-++.+. .| ++++ ||.+|+. +..+++ -.|-....+.... + ...++...+..++|++
T Consensus 8 eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~~fv~w~~dv~~~--e-g~~la~~l~~~~~P~~~ 81 (116)
T cd02991 8 QALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---TRMLFWACSVAKP--E-GYRVSQALRERTYPFLA 81 (116)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---cCEEEEEEecCCh--H-HHHHHHHhCCCCCCEEE
Confidence 344444455453 33 6667 7888864 333443 3455444444321 1 2458888899999999
Q ss_pred EE
Q psy1889 101 FV 102 (127)
Q Consensus 101 ~~ 102 (127)
++
T Consensus 82 ~l 83 (116)
T cd02991 82 MI 83 (116)
T ss_pred EE
Confidence 55
No 280
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=91.56 E-value=0.61 Score=33.45 Aligned_cols=61 Identities=26% Similarity=0.457 Sum_probs=38.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEE----Ecc-----------CCCCchHHHHHHHHhcCC--CcccEEEECCe
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTV----ELD-----------HRDDGDSIQDVLLEITGA--RSVPRVFVNGK 105 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i----~i~-----------~~~~~~~~~~~l~~~~~~--~~~P~i~~~g~ 105 (127)
|.+|++.+|..|..+-+.|.++..+-..+ +++ -.++.-+.+....+.++. -.+|+.+++|+
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr 122 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGR 122 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeech
Confidence 34499999999999999999876533322 111 112222445556666653 35788899886
No 281
>KOG4420|consensus
Probab=91.53 E-value=0.16 Score=36.97 Aligned_cols=74 Identities=12% Similarity=0.251 Sum_probs=63.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEeecHHHHHHHHc
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~igg~~~l~~~~~~ 119 (127)
.++|.-|..=+.++++-.+.+.+++++..+|+-. .+++-.+++.+.+....+|++..+...|-....+..+.+.
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~-~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLP-QGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCc-cccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 7778888888999999999999999999999874 3455567788888889999999999999999999888776
No 282
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=91.17 E-value=1.7 Score=25.18 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHHhcCCC---CEEEEccCCCCchHHHHHHHHhcCCCcccEEEE-CCeEEeecHHHHHHH
Q psy1889 53 CPYCKMAKDVFQKLKVT---PKTVELDHRDDGDSIQDVLLEITGARSVPRVFV-NGKFIGGGTDVKALY 117 (127)
Q Consensus 53 Cp~C~~~~~~l~~~~i~---~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~-~g~~igg~~~l~~~~ 117 (127)
.|.|-++.-+++-.+.+ ++.+..+.. . ......+|.+.. +++.+.|+.++.+++
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~n~-~----------~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSNNP-W----------LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcCCC-C----------cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 68999999999999988 666655531 1 235678999999 999999999998765
No 283
>PRK15000 peroxidase; Provisional
Probab=91.13 E-value=0.76 Score=31.95 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=25.1
Q ss_pred CCCcEEE-EEe-CCChhHHHHHHHHHhcC-----CCCEEEEccCCC
Q psy1889 41 ASEKIVI-FSK-SYCPYCKMAKDVFQKLK-----VTPKTVELDHRD 79 (127)
Q Consensus 41 ~~~~ivv-f~~-~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~~~ 79 (127)
+++.+++ ||. .|||.|....+.|.++. ..+..+-++.+.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~ 78 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDS 78 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4555555 666 48999999877776542 245566666553
No 284
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=90.96 E-value=0.53 Score=34.27 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=19.6
Q ss_pred HhhCCCcEEE--EEeCCChhHHHHHHHHHhc
Q psy1889 38 DLIASEKIVI--FSKSYCPYCKMAKDVFQKL 66 (127)
Q Consensus 38 ~~~~~~~ivv--f~~~~Cp~C~~~~~~l~~~ 66 (127)
+..++..+++ |.+.|||.|....+.|.++
T Consensus 94 d~~kgk~vVL~FyPa~ftpvCt~El~~l~~~ 124 (261)
T PTZ00137 94 DYFKDSYGLLVFYPLDFTFVCPSELLGFSER 124 (261)
T ss_pred HHcCCCeEEEEEECCCCCCCCHHHHHHHHHH
Confidence 3335555555 3489999999977766553
No 285
>KOG0911|consensus
Probab=90.96 E-value=0.069 Score=37.81 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=40.9
Q ss_pred CCcEEE-EEeCCChhHHHHHHHHHhcCCCC---EEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeE
Q psy1889 42 SEKIVI-FSKSYCPYCKMAKDVFQKLKVTP---KTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKF 106 (127)
Q Consensus 42 ~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~~---~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~ 106 (127)
...+++ |+++||..|..+..+++..+-.+ ....++. +-.+++...+.+..+|.+ +.+|+-
T Consensus 17 ~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a-----~~~~eis~~~~v~~vp~~~~~~~~~~ 82 (227)
T KOG0911|consen 17 GKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEA-----EEFPEISNLIAVEAVPYFVFFFLGEK 82 (227)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehh-----hhhhHHHHHHHHhcCceeeeeecchh
Confidence 333444 99999999999999998865433 2233332 224668888889999999 335553
No 286
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=90.74 E-value=0.59 Score=31.57 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=24.8
Q ss_pred HHHhcCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 88 LLEITGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 88 l~~~~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
.+...|+.++|+++++|+.+-|.+.+..+.
T Consensus 159 ~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~ 188 (192)
T cd03022 159 EAIARGVFGVPTFVVDGEMFWGQDRLDMLE 188 (192)
T ss_pred HHHHcCCCcCCeEEECCeeecccccHHHHH
Confidence 345568999999999999999998887654
No 287
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=89.79 E-value=0.65 Score=30.85 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=33.1
Q ss_pred CCCcEEE--EEeCCChhHHHH-HHHHHhcC-----CCC-EEEEccCCCCchHHHHHHHHhcCC-CcccEE
Q psy1889 41 ASEKIVI--FSKSYCPYCKMA-KDVFQKLK-----VTP-KTVELDHRDDGDSIQDVLLEITGA-RSVPRV 100 (127)
Q Consensus 41 ~~~~ivv--f~~~~Cp~C~~~-~~~l~~~~-----i~~-~~i~i~~~~~~~~~~~~l~~~~~~-~~~P~i 100 (127)
++.++++ |-+.|||.|... .+-|.+.. ... ..+-++.+.. ...+.+++..+. ..+|.+
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~--~~~~~~~~~~~~~~~f~lL 95 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDP--FVMKAWGKALGAKDKIRFL 95 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCH--HHHHHHHHhhCCCCcEEEE
Confidence 4455555 667899999987 55554432 123 2555555443 334556666565 346655
No 288
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=87.79 E-value=0.41 Score=33.33 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=18.3
Q ss_pred HHhcCCCcccEEEECCeEEeecHH
Q psy1889 89 LEITGARSVPRVFVNGKFIGGGTD 112 (127)
Q Consensus 89 ~~~~~~~~~P~i~~~g~~igg~~~ 112 (127)
.+.+|+.++|++++||+.+-+...
T Consensus 160 a~~~gI~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 160 AADLQLRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred HHHcCCCCCCEEEECCEEEEcccc
Confidence 345689999999999998655433
No 289
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=86.65 E-value=1.4 Score=29.64 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=24.2
Q ss_pred HHHhcCCCcccEEEECCe-EEeecHHHHHHH
Q psy1889 88 LLEITGARSVPRVFVNGK-FIGGGTDVKALY 117 (127)
Q Consensus 88 l~~~~~~~~~P~i~~~g~-~igg~~~l~~~~ 117 (127)
.+...|+.++|+++++|+ .+.|.+.+..+.
T Consensus 159 ~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~ 189 (193)
T PF01323_consen 159 EARQLGVFGVPTFVVNGKYRFFGADRLDELE 189 (193)
T ss_dssp HHHHTTCSSSSEEEETTTEEEESCSSHHHHH
T ss_pred HHHHcCCcccCEEEECCEEEEECCCCHHHHH
Confidence 445678999999999999 888888776653
No 290
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=84.31 E-value=5.4 Score=26.10 Aligned_cols=58 Identities=17% Similarity=0.396 Sum_probs=36.3
Q ss_pred CCcEEE--EEeCCChhHHHHHHHHHhcCC---CCE---EEEccCCCCchHHHHHHHHhcCCCcccEE---EECCeEE
Q psy1889 42 SEKIVI--FSKSYCPYCKMAKDVFQKLKV---TPK---TVELDHRDDGDSIQDVLLEITGARSVPRV---FVNGKFI 107 (127)
Q Consensus 42 ~~~ivv--f~~~~Cp~C~~~~~~l~~~~i---~~~---~i~i~~~~~~~~~~~~l~~~~~~~~~P~i---~~~g~~i 107 (127)
..++++ |+..|-|.|.++-.+|.+... +|. .+++++.+ .+.+.|... -|.. |.+++++
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vp-------dfn~~yel~-dP~tvmFF~rnkhm 87 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVP-------DFNQMYELY-DPCTVMFFFRNKHM 87 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTH-------CCHHHTTS--SSEEEEEEETTEEE
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccch-------hhhcccccC-CCeEEEEEecCeEE
Confidence 344444 999999999999999977542 444 44555443 366666655 5543 5577755
No 291
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=84.26 E-value=2 Score=28.52 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=19.8
Q ss_pred HHHHhcCCCcccEEEECCeEEeecHH
Q psy1889 87 VLLEITGARSVPRVFVNGKFIGGGTD 112 (127)
Q Consensus 87 ~l~~~~~~~~~P~i~~~g~~igg~~~ 112 (127)
.....+|+.++|++++||+.+-+...
T Consensus 134 ~~~~~~gi~gTPt~iInG~~~~~~~~ 159 (178)
T cd03019 134 KLAKKYKITGVPAFVVNGKYVVNPSA 159 (178)
T ss_pred HHHHHcCCCCCCeEEECCEEEEChhh
Confidence 34556789999999999997655443
No 292
>KOG3171|consensus
Probab=83.80 E-value=2 Score=30.55 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=46.8
Q ss_pred EEE-EEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeecHHHHHHH
Q psy1889 45 IVI-FSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGGTDVKALY 117 (127)
Q Consensus 45 ivv-f~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~~~l~~~~ 117 (127)
|+| .+-+.-+-|......+.=++..|..+..-..... .-....++....+|++ |.+|+.||.+..+.+-+
T Consensus 162 i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss---~~gas~~F~~n~lP~LliYkgGeLIgNFv~va~ql 234 (273)
T KOG3171|consen 162 IVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSS---NTGASDRFSLNVLPTLLIYKGGELIGNFVSVAEQL 234 (273)
T ss_pred EEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeec---cccchhhhcccCCceEEEeeCCchhHHHHHHHHHH
Confidence 444 6678899999999888888776664433221100 0124455667789998 77999999988766544
No 293
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=83.75 E-value=5 Score=27.65 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=15.7
Q ss_pred CCCcEEE-EE-eCCChhHHHHHHHHHh
Q psy1889 41 ASEKIVI-FS-KSYCPYCKMAKDVFQK 65 (127)
Q Consensus 41 ~~~~ivv-f~-~~~Cp~C~~~~~~l~~ 65 (127)
+++.++| || +.||+.|.....-|.+
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~ 61 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSD 61 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHH
Confidence 3444444 66 4789999876655544
No 294
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=83.35 E-value=5.4 Score=25.31 Aligned_cols=49 Identities=16% Similarity=0.472 Sum_probs=30.6
Q ss_pred CChhHHHHHHHHHhcC---CCCEEEEccCCCCchHHHHHHHHhcC--CCcccEEEECC
Q psy1889 52 YCPYCKMAKDVFQKLK---VTPKTVELDHRDDGDSIQDVLLEITG--ARSVPRVFVNG 104 (127)
Q Consensus 52 ~Cp~C~~~~~~l~~~~---i~~~~i~i~~~~~~~~~~~~l~~~~~--~~~~P~i~~~g 104 (127)
-||+|..+.-+|...- -...+..|+.-.- +.++....| ..+.|+++.++
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP----R~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRP----RQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCc----hHHHHHHhChhccCCCEEEeCC
Confidence 3999999999998753 2344444443322 334444444 67899996653
No 295
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.15 E-value=4.3 Score=31.97 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=47.6
Q ss_pred CCChhHHHHHHHHHhcC---CCCEEEEccCCCCch-HHHHHHHHhcC--CCcccEEEE-------CCeEEeecHHHHHHH
Q psy1889 51 SYCPYCKMAKDVFQKLK---VTPKTVELDHRDDGD-SIQDVLLEITG--ARSVPRVFV-------NGKFIGGGTDVKALY 117 (127)
Q Consensus 51 ~~Cp~C~~~~~~l~~~~---i~~~~i~i~~~~~~~-~~~~~l~~~~~--~~~~P~i~~-------~g~~igg~~~l~~~~ 117 (127)
..|||-.++.-+-+.+. -+|.+..|.+.++.. +-.+.+.+.++ ...=|.|++ .|-.+||+++..++.
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~ 81 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYA 81 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHH
Confidence 57999888876665553 478899998877532 22333444444 578899954 456999999999875
Q ss_pred H
Q psy1889 118 E 118 (127)
Q Consensus 118 ~ 118 (127)
+
T Consensus 82 ~ 82 (452)
T cd05295 82 E 82 (452)
T ss_pred H
Confidence 4
No 296
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.90 E-value=1.9 Score=30.52 Aligned_cols=29 Identities=34% Similarity=0.587 Sum_probs=22.7
Q ss_pred HHHhcCCCcccEEEECCeEEeecHHHHHH
Q psy1889 88 LLEITGARSVPRVFVNGKFIGGGTDVKAL 116 (127)
Q Consensus 88 l~~~~~~~~~P~i~~~g~~igg~~~l~~~ 116 (127)
+....|+.++|+++++|+.+.|..++..+
T Consensus 207 ~a~~~gv~gTPt~~v~~~~~~g~~~~~~l 235 (244)
T COG1651 207 LAQQLGVNGTPTFIVNGKLVPGLPDLDEL 235 (244)
T ss_pred HHHhcCCCcCCeEEECCeeecCCCCHHHH
Confidence 44556899999999999988888765444
No 297
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=79.33 E-value=1.3 Score=30.76 Aligned_cols=21 Identities=29% Similarity=0.760 Sum_probs=16.2
Q ss_pred CcEEEEEeCCChhHHHHHHHH
Q psy1889 43 EKIVIFSKSYCPYCKMAKDVF 63 (127)
Q Consensus 43 ~~ivvf~~~~Cp~C~~~~~~l 63 (127)
..|+-|+.-.||+|....+.+
T Consensus 39 ~~VvEffdy~CphC~~~~~~l 59 (207)
T PRK10954 39 PQVLEFFSFYCPHCYQFEEVY 59 (207)
T ss_pred CeEEEEeCCCCccHHHhcccc
Confidence 346669999999999976543
No 298
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=78.97 E-value=2.3 Score=26.80 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=40.4
Q ss_pred CCcEEEEEeCC---ChhHHHHHHHHHhcC----CCCEEEEccCCCCchHHHHHHHHhcCCCcccEE--EECCeEEeecHH
Q psy1889 42 SEKIVIFSKSY---CPYCKMAKDVFQKLK----VTPKTVELDHRDDGDSIQDVLLEITGARSVPRV--FVNGKFIGGGTD 112 (127)
Q Consensus 42 ~~~ivvf~~~~---Cp~C~~~~~~l~~~~----i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i--~~~g~~igg~~~ 112 (127)
....++|.+.. +|.+..+.-+|-++. -.+..--+.. +..++++.++|+...|++ +.+|+.+|....
T Consensus 26 ~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~-----~~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~g 100 (107)
T PF07449_consen 26 PGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVAR-----AAERALAARFGVRRWPALVFFRDGRYLGAIEG 100 (107)
T ss_dssp CSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEH-----HHHHHHHHHHT-TSSSEEEEEETTEEEEEEES
T ss_pred CCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECc-----hhHHHHHHHhCCccCCeEEEEECCEEEEEecC
Confidence 45566677644 344555444554432 2333222331 345789999999999999 779999987654
Q ss_pred H
Q psy1889 113 V 113 (127)
Q Consensus 113 l 113 (127)
+
T Consensus 101 i 101 (107)
T PF07449_consen 101 I 101 (107)
T ss_dssp S
T ss_pred e
Confidence 4
No 299
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=78.72 E-value=4.7 Score=27.36 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=21.3
Q ss_pred HHHhcCCCcccEEEECCe-EEeecHHHHHH
Q psy1889 88 LLEITGARSVPRVFVNGK-FIGGGTDVKAL 116 (127)
Q Consensus 88 l~~~~~~~~~P~i~~~g~-~igg~~~l~~~ 116 (127)
.+...|+.++|+++++|+ .+.|......+
T Consensus 167 ~a~~~gv~G~Pt~vv~g~~~~~G~~~~~~~ 196 (201)
T cd03024 167 RARQLGISGVPFFVFNGKYAVSGAQPPEVF 196 (201)
T ss_pred HHHHCCCCcCCEEEECCeEeecCCCCHHHH
Confidence 344568999999999987 56777655444
No 300
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=78.01 E-value=9.2 Score=25.84 Aligned_cols=54 Identities=11% Similarity=0.210 Sum_probs=28.1
Q ss_pred hCCCcEEE-EEeCCChh-HHHHHHHH-------HhcCCCCEEEEccCCCC--chHHHHHHHHhcC
Q psy1889 40 IASEKIVI-FSKSYCPY-CKMAKDVF-------QKLKVTPKTVELDHRDD--GDSIQDVLLEITG 93 (127)
Q Consensus 40 ~~~~~ivv-f~~~~Cp~-C~~~~~~l-------~~~~i~~~~i~i~~~~~--~~~~~~~l~~~~~ 93 (127)
.+++.++| |+.+.||. |..+..-| .+.+.++..+.|+.|++ .-+..+..++.++
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~~ 114 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKFG 114 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCHT
T ss_pred hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhcC
Confidence 34544444 88899976 87544333 22345666666666553 3333444444444
No 301
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=77.92 E-value=13 Score=23.98 Aligned_cols=51 Identities=12% Similarity=-0.031 Sum_probs=37.0
Q ss_pred CChhHHHHHHHh-hCCCcEEEEEeCCChhHH------------HHHHHHHhcCCCCEEEEccCC
Q psy1889 28 MNPASKQFVQDL-IASEKIVIFSKSYCPYCK------------MAKDVFQKLKVTPKTVELDHR 78 (127)
Q Consensus 28 ~~~~~~~~~~~~-~~~~~ivvf~~~~Cp~C~------------~~~~~l~~~~i~~~~i~i~~~ 78 (127)
+...+.+.++.+ .++..+++.++.....+. .+..||++.+++|..+.+...
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~kp 88 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGKP 88 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCCC
Confidence 345566666665 345667777766666666 889999999999998888763
No 302
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=77.78 E-value=9 Score=26.80 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=30.3
Q ss_pred hCCCcEEE-EEeCCChh-HHHHHH----HHHhc----CCCCEEEEccCCCCchHHHHHHHHhcCC
Q psy1889 40 IASEKIVI-FSKSYCPY-CKMAKD----VFQKL----KVTPKTVELDHRDDGDSIQDVLLEITGA 94 (127)
Q Consensus 40 ~~~~~ivv-f~~~~Cp~-C~~~~~----~l~~~----~i~~~~i~i~~~~~~~~~~~~l~~~~~~ 94 (127)
+++++.++ |+.+.||. |..... +++++ +.++..+.|..|++..- ++..+.|..
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDt--p~~lk~Y~~ 127 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDT--PEVLKKYAE 127 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCC--HHHHHHHhc
Confidence 45555555 77799987 876554 33444 35666666666654322 334444444
No 303
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=76.47 E-value=19 Score=23.72 Aligned_cols=74 Identities=18% Similarity=0.309 Sum_probs=43.2
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCc--ccEE-EE-CCeEEeecHHHHHH
Q psy1889 41 ASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARS--VPRV-FV-NGKFIGGGTDVKAL 116 (127)
Q Consensus 41 ~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~--~P~i-~~-~g~~igg~~~l~~~ 116 (127)
++...+|++--.|+.|...+.+|.++.-.-.....+...+. -..+.+..+... +=++ ++ +|+...+++.+.+.
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~---g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i 82 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEP---GQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRI 82 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCch---hhhHHhhcCCChhhhheeeEecCCceEeccHHHHHH
Confidence 44567777789999999999999888654444333332211 122444444221 1122 33 67777777766554
Q ss_pred H
Q psy1889 117 Y 117 (127)
Q Consensus 117 ~ 117 (127)
.
T Consensus 83 ~ 83 (137)
T COG3011 83 L 83 (137)
T ss_pred H
Confidence 3
No 304
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=76.25 E-value=22 Score=24.96 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=27.3
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEcc
Q psy1889 41 ASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELD 76 (127)
Q Consensus 41 ~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~ 76 (127)
....+.+|....|+.|......+..-+-++..+-++
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvg 143 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVG 143 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEec
Confidence 445678899999999998887776656666666666
No 305
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=76.12 E-value=8.7 Score=24.67 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=32.1
Q ss_pred CCChhHHH-----------HHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEE
Q psy1889 51 SYCPYCKM-----------AKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFI 107 (127)
Q Consensus 51 ~~Cp~C~~-----------~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~i 107 (127)
.+|+-|.. +++.|+.+|+......+..++. +++..+ -.-|++.+||..+
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~------~~~~~~--~~S~~I~inG~pi 72 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE------EFARQP--LESPTIRINGRPI 72 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH------HHhhcc--cCCCeeeECCEeh
Confidence 38999864 5566677788665555444332 355433 6689999999966
No 306
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=75.03 E-value=3.8 Score=27.52 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=23.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHh----c-CCCCEEEEcc
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQK----L-KVTPKTVELD 76 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~----~-~i~~~~i~i~ 76 (127)
+|.+|+...||+|-.+.+.|.+ . +++++.+-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 3778999999999887776655 3 5555554444
No 307
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=74.74 E-value=21 Score=25.75 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHhhCCCcEEEEEeC-----CChhHHHHHHHHHhc------CCCCEEEEccCCCCchHHHHHHHHhcCCC
Q psy1889 27 VMNPASKQFVQDLIASEKIVIFSKS-----YCPYCKMAKDVFQKL------KVTPKTVELDHRDDGDSIQDVLLEITGAR 95 (127)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~ivvf~~~-----~Cp~C~~~~~~l~~~------~i~~~~i~i~~~~~~~~~~~~l~~~~~~~ 95 (127)
..+..+.+.++.+-++-.|.+|..+ .-+.=+.++.+|+++ .++++.++.+..+ +..+..++.+|+.
T Consensus 11 sLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~---~~~~~~~~~~Gi~ 87 (271)
T PF09822_consen 11 SLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENP---SEAEEKAKEYGIQ 87 (271)
T ss_pred cCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCCh---HHHHHHHHhcCCC
Confidence 3567778888887666666667766 355667788888776 3455666654433 3344556667776
Q ss_pred cccEE
Q psy1889 96 SVPRV 100 (127)
Q Consensus 96 ~~P~i 100 (127)
.++..
T Consensus 88 ~~~~~ 92 (271)
T PF09822_consen 88 PVQIE 92 (271)
T ss_pred cccee
Confidence 64443
No 308
>PRK09301 circadian clock protein KaiB; Provisional
Probab=68.41 E-value=13 Score=23.23 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=46.2
Q ss_pred EEEEEeCCChhHHHHHHHHHh----c-CCCC--EEEEccCCCCchHHHHHHHHhcCCCcccEEEEC-----CeEEeecHH
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQK----L-KVTP--KTVELDHRDDGDSIQDVLLEITGARSVPRVFVN-----GKFIGGGTD 112 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~----~-~i~~--~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~-----g~~igg~~~ 112 (127)
..+|.+..-|..+.+.+-+.+ . +-.| +++|+.+. ++++....+-.+|++... .+.||...+
T Consensus 9 LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~q-------PelAE~~~IvATPTLIK~~P~P~rriiGDlsd 81 (103)
T PRK09301 9 LKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKN-------PQLAEEDKILATPTLAKILPPPVRKIIGDLSD 81 (103)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-------HhHHhHCCeEEecHHhhcCCCCcceeeccccc
Confidence 445888888888876655543 2 2234 45666665 458888899999999543 358998888
Q ss_pred HHHHHH
Q psy1889 113 VKALYE 118 (127)
Q Consensus 113 l~~~~~ 118 (127)
..+.+.
T Consensus 82 ~~kVL~ 87 (103)
T PRK09301 82 REKVLI 87 (103)
T ss_pred HHHHHH
Confidence 877654
No 309
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=68.27 E-value=5.7 Score=24.71 Aligned_cols=16 Identities=25% Similarity=0.795 Sum_probs=13.9
Q ss_pred cEEEEEeCCChhHHHH
Q psy1889 44 KIVIFSKSYCPYCKMA 59 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~ 59 (127)
+|.||+-+-||+|++.
T Consensus 2 ~v~vyyESlCPd~~~f 17 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRF 17 (108)
T ss_pred EEEEEEEecCHhHHHH
Confidence 5788999999999873
No 310
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=67.30 E-value=13 Score=22.43 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=44.4
Q ss_pred EEEEEeCCChhHHHHHHHH----Hhc-CCCC--EEEEccCCCCchHHHHHHHHhcCCCcccEEEEC-----CeEEeecHH
Q psy1889 45 IVIFSKSYCPYCKMAKDVF----QKL-KVTP--KTVELDHRDDGDSIQDVLLEITGARSVPRVFVN-----GKFIGGGTD 112 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l----~~~-~i~~--~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~-----g~~igg~~~ 112 (127)
..+|.+..-|.++.+.+-+ ++. +-.| +++|+.+. +++++...+-.+|++... .+.||...+
T Consensus 6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~q-------P~lAE~~~IvATPtLIK~~P~P~rriiGdls~ 78 (87)
T TIGR02654 6 LKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKN-------PQLAEEDKILATPTLSKILPPPVRKIIGDLSD 78 (87)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-------HhHHhHCCEEEecHHhhcCCCCcceeeccccc
Confidence 3458888888887765544 432 2234 45666665 458888899999999553 357888887
Q ss_pred HHHHH
Q psy1889 113 VKALY 117 (127)
Q Consensus 113 l~~~~ 117 (127)
..+.+
T Consensus 79 ~~~vl 83 (87)
T TIGR02654 79 RERVL 83 (87)
T ss_pred hHHHH
Confidence 76653
No 311
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.92 E-value=7 Score=27.56 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=18.9
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhc
Q psy1889 43 EKIVIFSKSYCPYCKMAKDVFQKL 66 (127)
Q Consensus 43 ~~ivvf~~~~Cp~C~~~~~~l~~~ 66 (127)
..+++|....||+|+...+-+.+.
T Consensus 86 v~v~~f~d~~Cp~C~~~~~~l~~~ 109 (244)
T COG1651 86 VTVVEFFDYTCPYCKEAFPELKKK 109 (244)
T ss_pred ceEEEEecCcCccHHHHHHHHHHH
Confidence 345559999999998888877764
No 312
>KOG3170|consensus
Probab=65.38 E-value=13 Score=26.27 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=42.1
Q ss_pred HHHHhhCCCcEEE-EEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE
Q psy1889 35 FVQDLIASEKIVI-FSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 35 ~~~~~~~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~ 102 (127)
.+..+-+..=|+| .+..+=|.|+-....|++++..|..+..-+.... .....|.-...||+++
T Consensus 104 EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at-----~cIpNYPe~nlPTl~V 167 (240)
T KOG3170|consen 104 EVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPAT-----TCIPNYPESNLPTLLV 167 (240)
T ss_pred HHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccc-----cccCCCcccCCCeEEE
Confidence 3333333333444 6789999999999999999998886655443321 1223456778999955
No 313
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.75 E-value=12 Score=30.92 Aligned_cols=66 Identities=24% Similarity=0.378 Sum_probs=38.0
Q ss_pred HHhhCCCcEEE-EEeCCChhHHHHHH-HH------HhcCCCCEEEEccCCC--CchHHHHHHH-HhcCCCcccEE-EE
Q psy1889 37 QDLIASEKIVI-FSKSYCPYCKMAKD-VF------QKLKVTPKTVELDHRD--DGDSIQDVLL-EITGARSVPRV-FV 102 (127)
Q Consensus 37 ~~~~~~~~ivv-f~~~~Cp~C~~~~~-~l------~~~~i~~~~i~i~~~~--~~~~~~~~l~-~~~~~~~~P~i-~~ 102 (127)
++..++++|.+ .+.+||.-|+.+.. -+ +-++-.|.-|+||..+ +-..+..... -..|..+-|.. |.
T Consensus 38 ~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfL 115 (667)
T COG1331 38 KAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFL 115 (667)
T ss_pred HHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEE
Confidence 34456778888 88899999997653 22 2244567777777643 3222222222 22345566654 44
No 314
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=63.30 E-value=4.8 Score=29.19 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=18.2
Q ss_pred hCCCcEEE--EEeCCChhHHHHH----HHHHhcCC
Q psy1889 40 IASEKIVI--FSKSYCPYCKMAK----DVFQKLKV 68 (127)
Q Consensus 40 ~~~~~ivv--f~~~~Cp~C~~~~----~~l~~~~i 68 (127)
..+.++.| .++.|||+|...+ -.|.+.|.
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 34444444 6679999998755 34565554
No 315
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=60.90 E-value=6.5 Score=26.43 Aligned_cols=23 Identities=22% Similarity=0.567 Sum_probs=18.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKL 66 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~ 66 (127)
+|.+|+.+.||+|-.+.+.|.++
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l 24 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKL 24 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHH
Confidence 46789999999998777766543
No 316
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=58.96 E-value=42 Score=21.04 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=32.6
Q ss_pred HHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhcCCCCE-EEEccCCCCchHHHHHHHHhcCCCcccEEEE-CC
Q psy1889 33 KQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPK-TVELDHRDDGDSIQDVLLEITGARSVPRVFV-NG 104 (127)
Q Consensus 33 ~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~-~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~-~g 104 (127)
.+.++++.+-.-++||-.---+.=+.....+.++...-. ...+..|+ .+.++|++..+|++.. .+
T Consensus 14 ~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~~~v~IdP-------~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 14 RNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKDDPCPGVQIDP-------RLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhccCCCcceeECh-------hHHhhCCceEcCEEEEEcC
Confidence 344444443333333432222233444444444433221 13444444 3888999999999944 45
No 317
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=58.75 E-value=53 Score=22.11 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=43.2
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhc----------------------CCCcccEE--EECCeE
Q psy1889 51 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEIT----------------------GARSVPRV--FVNGKF 106 (127)
Q Consensus 51 ~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~----------------------~~~~~P~i--~~~g~~ 106 (127)
+.=|+++++...|++++++|+..-++-+...+...+...+.. +...+|.| -.....
T Consensus 9 SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~~~~~ 88 (156)
T TIGR01162 9 SDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVPVPSKA 88 (156)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEecCCccC
Confidence 445889999999999999988777776666555544443211 24556666 223344
Q ss_pred EeecHHHHHHHH
Q psy1889 107 IGGGTDVKALYE 118 (127)
Q Consensus 107 igg~~~l~~~~~ 118 (127)
.+|.+.+.....
T Consensus 89 l~G~daLlS~vq 100 (156)
T TIGR01162 89 LSGLDSLLSIVQ 100 (156)
T ss_pred CCCHHHHHHHhc
Confidence 666676666544
No 318
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=57.54 E-value=82 Score=23.87 Aligned_cols=86 Identities=9% Similarity=-0.086 Sum_probs=57.3
Q ss_pred HHHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhcCCCCEEE----------EccCCCCchHHHHHHHHhcCCCcccEEE
Q psy1889 32 SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTV----------ELDHRDDGDSIQDVLLEITGARSVPRVF 101 (127)
Q Consensus 32 ~~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i----------~i~~~~~~~~~~~~l~~~~~~~~~P~i~ 101 (127)
..+.+..+++..-+.||+-.++..+..+.++.++.++++-.. .+...+......-++.+.++++++=.+|
T Consensus 52 ~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~~i~~~~wk~vaiiY 131 (371)
T cd06388 52 VTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEWNRFVFLY 131 (371)
T ss_pred HHHHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHHHHHhcCceEEEEEe
Confidence 356677788888888899999999999999999998876431 2222222222233356677888877778
Q ss_pred ECCeEEeecHHHHHHH
Q psy1889 102 VNGKFIGGGTDVKALY 117 (127)
Q Consensus 102 ~~g~~igg~~~l~~~~ 117 (127)
..+.-.+....+.+..
T Consensus 132 d~~~~~~~lq~l~~~~ 147 (371)
T cd06388 132 DTDRGYSILQAIMEKA 147 (371)
T ss_pred cCCccHHHHHHHHHhh
Confidence 6566455555554443
No 319
>KOG4700|consensus
Probab=57.21 E-value=11 Score=26.00 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCCcccEE-EECCeEEeecHHHHHHHHcCCcc
Q psy1889 83 SIQDVLLEITGARSVPRV-FVNGKFIGGGTDVKALYEKGELH 123 (127)
Q Consensus 83 ~~~~~l~~~~~~~~~P~i-~~~g~~igg~~~l~~~~~~~~L~ 123 (127)
+.+..+.+..+.+.+|-| |++++-..+..++.+++++.++.
T Consensus 100 ~~rh~l~~~~~~g~vP~IkFV~DK~~~~l~e~d~ll~~aD~g 141 (207)
T KOG4700|consen 100 QIRHRLEESIGIGTVPEIKFVGDKALLMLQEMDKLLREADYG 141 (207)
T ss_pred HHHHHHHHHhccccCCceEEecchHHHHHHHHHHHHHHhccC
Confidence 345556666678889988 99999877888888888777653
No 320
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=56.88 E-value=20 Score=20.87 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=34.1
Q ss_pred EEEEEeCCChhHHHHHH----HHHhc-CCCC--EEEEccCCCCchHHHHHHHHhcCCCcccEEEE
Q psy1889 45 IVIFSKSYCPYCKMAKD----VFQKL-KVTP--KTVELDHRDDGDSIQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~----~l~~~-~i~~--~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~ 102 (127)
..+|.+..-|.+.++.. ++++. +.+| +++|+.+.+ +++....+-.+|++..
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P-------~lAe~~~ivAtPtLvk 61 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQP-------QLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCH-------hHHhhCCEEEechhhh
Confidence 44587777777776554 44443 3344 467777654 4888888999999854
No 321
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=55.62 E-value=55 Score=21.28 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=13.6
Q ss_pred HHHHhcCCCcccEEEE
Q psy1889 87 VLLEITGARSVPRVFV 102 (127)
Q Consensus 87 ~l~~~~~~~~~P~i~~ 102 (127)
.+.+.|++..+|++.+
T Consensus 62 ~lF~~f~I~~VPa~V~ 77 (130)
T TIGR02742 62 QWFKQFDITAVPAFVV 77 (130)
T ss_pred HHHhhcCceEcCEEEE
Confidence 3888999999999944
No 322
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=54.57 E-value=32 Score=20.94 Aligned_cols=24 Identities=4% Similarity=0.050 Sum_probs=18.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCC
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKV 68 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i 68 (127)
.+++|..+. ++|..++.++++..-
T Consensus 22 ~l~~f~~~~-~~~~e~~~ll~e~a~ 45 (94)
T cd02974 22 ELVASLDDS-EKSAELLELLEEIAS 45 (94)
T ss_pred EEEEEeCCC-cchHHHHHHHHHHHH
Confidence 344476666 999999999988654
No 323
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=53.04 E-value=52 Score=20.43 Aligned_cols=53 Identities=17% Similarity=0.342 Sum_probs=32.1
Q ss_pred CChhHHH-HHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCeEEe
Q psy1889 52 YCPYCKM-AKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIG 108 (127)
Q Consensus 52 ~Cp~C~~-~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~~ig 108 (127)
.|-.|.. ++++|.+.+++...+.+......+.+ ...++++.. -++-.||.+.|
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T~~~~~~~--I~sd~~~~~--~sIt~NG~H~g 73 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYTGYHEGPF--IYSDRLGPQ--ESITTNGRHYG 73 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEecCCCCce--ehhhhhcCC--cceeeCCEEEE
Confidence 5988875 56799999999998888763211111 233333222 25566766543
No 324
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=52.82 E-value=28 Score=23.24 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=25.3
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhcCCC
Q psy1889 41 ASEKIVIFSKSYCPYCKMAKDVFQKLKVT 69 (127)
Q Consensus 41 ~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~ 69 (127)
++.+|++|..++|..+..+...|...|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 56789999999999899999999998875
No 325
>KOG2640|consensus
Probab=51.83 E-value=1.9 Score=32.18 Aligned_cols=58 Identities=16% Similarity=0.347 Sum_probs=34.8
Q ss_pred CcEEE-EEeCCChhHHHHHHHHHhcCCCCE---EEEccCCCCchHHHHHHHHhcCCCcccEE-EECC
Q psy1889 43 EKIVI-FSKSYCPYCKMAKDVFQKLKVTPK---TVELDHRDDGDSIQDVLLEITGARSVPRV-FVNG 104 (127)
Q Consensus 43 ~~ivv-f~~~~Cp~C~~~~~~l~~~~i~~~---~i~i~~~~~~~~~~~~l~~~~~~~~~P~i-~~~g 104 (127)
.++-. |+++|||+.+..++-++-..--|. ..-+++. ........++++.+.|.+ +.+-
T Consensus 77 ~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~----~~lpsv~s~~~~~~~ps~~~~n~ 139 (319)
T KOG2640|consen 77 DYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEES----QALPSVFSSYGIHSEPSNLMLNQ 139 (319)
T ss_pred CcccccchhcccCcccccCcccchhhhhccccccccHHHH----hhcccchhccccccCCcceeecc
Confidence 34444 999999999888876655433332 1112221 223446677788888888 4443
No 326
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=51.01 E-value=26 Score=22.29 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=19.2
Q ss_pred cCCCcccEEEECCe-EEeecHHHHHH
Q psy1889 92 TGARSVPRVFVNGK-FIGGGTDVKAL 116 (127)
Q Consensus 92 ~~~~~~P~i~~~g~-~igg~~~l~~~ 116 (127)
+|+..+|.+.+|++ .|.|-.++.+.
T Consensus 79 lgi~k~PAVVfD~~~VVYG~tDV~~A 104 (114)
T PF07511_consen 79 LGITKYPAVVFDDRYVVYGETDVARA 104 (114)
T ss_pred hCccccCEEEEcCCeEEecccHHHHH
Confidence 47999999977765 67777777654
No 327
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.92 E-value=51 Score=22.96 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.3
Q ss_pred cCCCcccEEEECCeEEeecHHHHHHH
Q psy1889 92 TGARSVPRVFVNGKFIGGGTDVKALY 117 (127)
Q Consensus 92 ~~~~~~P~i~~~g~~igg~~~l~~~~ 117 (127)
-|+-+.|+++++++..-|.+.+..+.
T Consensus 172 rGvfGaPtfivg~q~fwGqDRL~~le 197 (203)
T COG3917 172 RGVFGAPTFIVGDQLFWGQDRLYQLE 197 (203)
T ss_pred cCccCCCeEEECCeeeechhHHHHHH
Confidence 37899999999999999999886553
No 328
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=46.87 E-value=6.3 Score=26.07 Aligned_cols=14 Identities=21% Similarity=0.607 Sum_probs=11.7
Q ss_pred CCChhHHHHHHHHH
Q psy1889 51 SYCPYCKMAKDVFQ 64 (127)
Q Consensus 51 ~~Cp~C~~~~~~l~ 64 (127)
-.||+|+...+.|.
T Consensus 10 i~CPhCRQ~ipALt 23 (163)
T TIGR02652 10 IRCPHCRQNIPALT 23 (163)
T ss_pred CcCchhhcccchhe
Confidence 36999999999874
No 329
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=46.70 E-value=6.1 Score=26.08 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=12.1
Q ss_pred CCChhHHHHHHHHHh
Q psy1889 51 SYCPYCKMAKDVFQK 65 (127)
Q Consensus 51 ~~Cp~C~~~~~~l~~ 65 (127)
-.||+|+...+.|.-
T Consensus 7 i~CPhCRq~ipALtL 21 (161)
T PF09654_consen 7 IQCPHCRQTIPALTL 21 (161)
T ss_pred CcCchhhcccchhee
Confidence 359999999998743
No 330
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.46 E-value=21 Score=25.58 Aligned_cols=52 Identities=27% Similarity=0.452 Sum_probs=30.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCCE---EEEc-------c--CCCCchHHHHHHHHhcCC
Q psy1889 43 EKIVIFSKSYCPYCKMAKDVFQKLKVTPK---TVEL-------D--HRDDGDSIQDVLLEITGA 94 (127)
Q Consensus 43 ~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~---~i~i-------~--~~~~~~~~~~~l~~~~~~ 94 (127)
..|.+|+-.-||.|-.-++-|++.-..+. .+++ + ..+.+.+....++++||+
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~ 69 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGI 69 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEecccccCCCCCcccccHHHHHHHHhCc
Confidence 35667999999999766666655322111 1221 1 122344567778888774
No 331
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=44.39 E-value=97 Score=20.87 Aligned_cols=57 Identities=16% Similarity=0.337 Sum_probs=30.7
Q ss_pred CCCcEEEEE--eCCChhHHHHHHHHHh----c-CCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE
Q psy1889 41 ASEKIVIFS--KSYCPYCKMAKDVFQK----L-KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV 100 (127)
Q Consensus 41 ~~~~ivvf~--~~~Cp~C~~~~~~l~~----~-~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i 100 (127)
...+||+|. ..++|-|.....-++. + .....++-|+.|.. .-.+.++++++.. +|-+
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~--~~~~~F~~k~~L~-f~LL 92 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSP--KSHKKFAEKHGLT-FPLL 92 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCH--HHHHHHHHHhCCC-ceee
Confidence 455777754 4677888765544433 2 22555666665543 2234455555544 4444
No 332
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=43.38 E-value=21 Score=27.36 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=40.3
Q ss_pred HHHHHHhhCCCcEEE--EEeCCChhHHH-------------HHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcc
Q psy1889 33 KQFVQDLIASEKIVI--FSKSYCPYCKM-------------AKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSV 97 (127)
Q Consensus 33 ~~~~~~~~~~~~ivv--f~~~~Cp~C~~-------------~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~ 97 (127)
...++++++...+.+ |+.+--..-.. +.++|+..++.+-.++..++. .++++.|..-.
T Consensus 41 eKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~-------klAKKLgv~E~ 113 (383)
T PF01216_consen 41 EKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDA-------KLAKKLGVEEE 113 (383)
T ss_dssp TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTH-------HHHHHHT--ST
T ss_pred hhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHH-------HHHHhcCcccc
Confidence 444566666666444 55544222221 334556677888888888763 58999998889
Q ss_pred cEE--EECCeEE
Q psy1889 98 PRV--FVNGKFI 107 (127)
Q Consensus 98 P~i--~~~g~~i 107 (127)
+++ |.+|+.|
T Consensus 114 ~SiyVfkd~~~I 125 (383)
T PF01216_consen 114 GSIYVFKDGEVI 125 (383)
T ss_dssp TEEEEEETTEEE
T ss_pred CcEEEEECCcEE
Confidence 998 6678754
No 333
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=43.14 E-value=55 Score=26.00 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=17.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKV 68 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i 68 (127)
+++|. ..|++|..++.+|+++.-
T Consensus 23 ~~~~~-~~~~~~~~~~~~~~~~~~ 45 (517)
T PRK15317 23 LVASL-DDSEKSAELKELLEEIAS 45 (517)
T ss_pred EEEEe-CCCchHHHHHHHHHHHHH
Confidence 44455 489999999999988753
No 334
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=43.12 E-value=38 Score=21.54 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=18.9
Q ss_pred cCCCcccEEEECCe-EEeecHHHHHH
Q psy1889 92 TGARSVPRVFVNGK-FIGGGTDVKAL 116 (127)
Q Consensus 92 ~~~~~~P~i~~~g~-~igg~~~l~~~ 116 (127)
+|+.++|.+.+|++ .|.|-.++.+.
T Consensus 80 lGi~k~PAVV~D~~~VVYG~~DV~~A 105 (113)
T TIGR03757 80 LGVTKIPAVVVDRRYVVYGETDVARA 105 (113)
T ss_pred cCCccCCEEEEcCCeEEecCccHHHH
Confidence 47999999988766 66677666554
No 335
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.04 E-value=55 Score=25.56 Aligned_cols=33 Identities=6% Similarity=0.197 Sum_probs=24.7
Q ss_pred cEEEEEeCCChhHHH------HHHHHHhcCC-CCEEEEcc
Q psy1889 44 KIVIFSKSYCPYCKM------AKDVFQKLKV-TPKTVELD 76 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~------~~~~l~~~~i-~~~~i~i~ 76 (127)
...++.+.+|++||. .+.+|+..|+ ++.++.++
T Consensus 72 n~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn 111 (420)
T COG3581 72 NDAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLN 111 (420)
T ss_pred ccEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEee
Confidence 455566679999985 7789999886 56666666
No 336
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=42.65 E-value=1.5e+02 Score=22.47 Aligned_cols=85 Identities=11% Similarity=0.047 Sum_probs=52.9
Q ss_pred HHHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhcCCCCEEE-------------------------EccCCCCchHHHH
Q psy1889 32 SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTV-------------------------ELDHRDDGDSIQD 86 (127)
Q Consensus 32 ~~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i-------------------------~i~~~~~~~~~~~ 86 (127)
+.....+++...-+.|++...++.+..+.++.++.++++-.. .+..+........
T Consensus 51 a~~~~c~Li~~gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~~~~~~~~~~~~~~~~~~~~~~~~~f~~rp~~~~~~ai~ 130 (363)
T cd06381 51 AVQEACDLMNQGILALVTSTGCASAIALQSLTDAMHIPHLFIQRGYGGSPRTACGLNPSPRGQQYTLALRPPVRLNDVML 130 (363)
T ss_pred HHHHHHHHHhcCcEEEEecCChhHHHHHHHHhhCCCCCEEEeecCcCCCcccccccCCCcccceeEEEEeccHHHHHHHH
Confidence 345566677675566799999999999999999987765331 1111111223444
Q ss_pred HHHHhcCCCcccEEEECCeEEeecHHHHHH
Q psy1889 87 VLLEITGARSVPRVFVNGKFIGGGTDVKAL 116 (127)
Q Consensus 87 ~l~~~~~~~~~P~i~~~g~~igg~~~l~~~ 116 (127)
.+.+.+++..+=.++.+.....+..++.+.
T Consensus 131 ~lv~~~~wkkvavly~~d~g~~~l~~~~~~ 160 (363)
T cd06381 131 RLVTEWRWQKFVYFYDNDYDIRGLQEFLDQ 160 (363)
T ss_pred HHHHhCCCeEEEEEEECCchHHHHHHHHHH
Confidence 556667888776667776544444444443
No 337
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=42.12 E-value=81 Score=22.36 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=14.8
Q ss_pred HHHHHHhcCCCcccEEEE
Q psy1889 85 QDVLLEITGARSVPRVFV 102 (127)
Q Consensus 85 ~~~l~~~~~~~~~P~i~~ 102 (127)
-+.+.+.|++..||++.+
T Consensus 151 DP~lF~~F~I~~VPafVv 168 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVV 168 (212)
T ss_pred CHHHHHhcCCccccEEEE
Confidence 355788899999999965
No 338
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=41.97 E-value=27 Score=23.26 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=17.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKL 66 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~ 66 (127)
|.+|+..-||+|--..+.|++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~ 22 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPAL 22 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHH
Confidence 3478889999998877777653
No 339
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=39.47 E-value=1.7e+02 Score=22.13 Aligned_cols=73 Identities=12% Similarity=0.022 Sum_probs=49.1
Q ss_pred HHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhcCCCCEEEE----------ccCCCCchHHHHHHHHhcCCCcccEEEE
Q psy1889 33 KQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVE----------LDHRDDGDSIQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 33 ~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~----------i~~~~~~~~~~~~l~~~~~~~~~P~i~~ 102 (127)
.+.+..+++..-+.||+...+..+..+.++.++.++++-... +...+.-....-++.+.++++++=.++.
T Consensus 47 ~~~~C~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~~~~ai~d~i~~~~wk~vailYd 126 (370)
T cd06389 47 TNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFAYLYD 126 (370)
T ss_pred HHHHHHHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecchhhhHHHHHHHhcCCcEEEEEec
Confidence 456667788888888999999999999999999888765421 1222222233334556678888777776
Q ss_pred CCe
Q psy1889 103 NGK 105 (127)
Q Consensus 103 ~g~ 105 (127)
++.
T Consensus 127 sd~ 129 (370)
T cd06389 127 SDR 129 (370)
T ss_pred Cch
Confidence 443
No 340
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=38.95 E-value=70 Score=21.37 Aligned_cols=39 Identities=8% Similarity=0.130 Sum_probs=27.0
Q ss_pred CChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHH
Q psy1889 52 YCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLE 90 (127)
Q Consensus 52 ~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~ 90 (127)
.=+++++++..|++++++|+..-+.-....+.+.+.+.+
T Consensus 12 D~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~ 50 (150)
T PF00731_consen 12 DLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKE 50 (150)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHH
Confidence 448899999999999999988777766665555554443
No 341
>KOG2603|consensus
Probab=38.37 E-value=55 Score=24.74 Aligned_cols=51 Identities=25% Similarity=0.438 Sum_probs=31.8
Q ss_pred EEEEEe----CCChhHHHHHHHHHhcCC--------------CCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE
Q psy1889 45 IVIFSK----SYCPYCKMAKDVFQKLKV--------------TPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 45 ivvf~~----~~Cp~C~~~~~~l~~~~i--------------~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~ 102 (127)
|++|+| ..|.-|+.+.+.+.-... =|..+|.++. +...+..+..++|++++
T Consensus 64 IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~-------p~~Fq~l~ln~~P~l~~ 132 (331)
T KOG2603|consen 64 IVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES-------PQVFQQLNLNNVPHLVL 132 (331)
T ss_pred EEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc-------HHHHHHhcccCCCeEEE
Confidence 444776 569999987765543211 1234555543 33666778889999955
No 342
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=37.95 E-value=1.3e+02 Score=20.40 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=43.0
Q ss_pred CCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhc--C--------------------CCcccEE--EECCeE
Q psy1889 51 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEIT--G--------------------ARSVPRV--FVNGKF 106 (127)
Q Consensus 51 ~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~--~--------------------~~~~P~i--~~~g~~ 106 (127)
+.-+.-+.+...|++++++|+..-++-+...+...+...... | .+.+|+| -+..+.
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~ 92 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKA 92 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEeccCcccc
Confidence 344677889999999999999888887766555444332221 1 3456766 345566
Q ss_pred EeecHHHHHH
Q psy1889 107 IGGGTDVKAL 116 (127)
Q Consensus 107 igg~~~l~~~ 116 (127)
++|.++|...
T Consensus 93 L~GlDSL~Si 102 (162)
T COG0041 93 LSGLDSLLSI 102 (162)
T ss_pred ccchHHHHHH
Confidence 7777766553
No 343
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=37.87 E-value=1.7e+02 Score=22.38 Aligned_cols=83 Identities=8% Similarity=-0.108 Sum_probs=53.2
Q ss_pred HHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhcCCCCEEE----------EccCCCCchHHHHHHHHhcCCCcccEEEE
Q psy1889 33 KQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTV----------ELDHRDDGDSIQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 33 ~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i----------~i~~~~~~~~~~~~l~~~~~~~~~P~i~~ 102 (127)
.+.+..++...-+.||+-+.|..-..+..+.+.+.+++-.. .++..+.-.....++.+.++++.+=.+|-
T Consensus 53 ~~~~C~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~l~~Ai~diI~~~~Wr~~~~iYd 132 (372)
T cd06387 53 TNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPALKGAILSLLAHYKWEKFVYLYD 132 (372)
T ss_pred HHHHHHHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChhHHHHHHHHHHhcCCCEEEEEec
Confidence 45566677888888899888877777777777777766432 22333333344555667788988877786
Q ss_pred CCeEEeecHHHHH
Q psy1889 103 NGKFIGGGTDVKA 115 (127)
Q Consensus 103 ~g~~igg~~~l~~ 115 (127)
++.-+++..++..
T Consensus 133 ~d~gl~~Lq~L~~ 145 (372)
T cd06387 133 TERGFSILQAIME 145 (372)
T ss_pred CchhHHHHHHHHH
Confidence 5554444444433
No 344
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=37.15 E-value=31 Score=21.58 Aligned_cols=18 Identities=22% Similarity=0.609 Sum_probs=12.9
Q ss_pred EEeCCChhHHHHHHHHHh
Q psy1889 48 FSKSYCPYCKMAKDVFQK 65 (127)
Q Consensus 48 f~~~~Cp~C~~~~~~l~~ 65 (127)
--.+.||.|.+-+.-|.+
T Consensus 29 H~~s~Cp~C~kkraeLa~ 46 (104)
T PF15379_consen 29 HNSSQCPSCNKKRAELAQ 46 (104)
T ss_pred cCcccChHHHHHHHHHHH
Confidence 345889999987665544
No 345
>KOG4498|consensus
Probab=36.87 E-value=33 Score=23.96 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=21.8
Q ss_pred HHHhhCCCcEEE--EEeCCChhHHHHHHHHHh
Q psy1889 36 VQDLIASEKIVI--FSKSYCPYCKMAKDVFQK 65 (127)
Q Consensus 36 ~~~~~~~~~ivv--f~~~~Cp~C~~~~~~l~~ 65 (127)
+.++.+++..+| ...+.|--||+..+-|.+
T Consensus 44 ~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~ 75 (197)
T KOG4498|consen 44 VTSLFKERSAVVAFVRRPGCVLCREEAADLAS 75 (197)
T ss_pred hHHhhhcCCeEEEEeccCcEEEeHHHHHHHHH
Confidence 556777877776 557999999986655544
No 346
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=35.20 E-value=1.3e+02 Score=23.46 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=28.6
Q ss_pred CCCcEEEEEeCCChh---------HHHHHHHHHhcCCCCEEEEccCC
Q psy1889 41 ASEKIVIFSKSYCPY---------CKMAKDVFQKLKVTPKTVELDHR 78 (127)
Q Consensus 41 ~~~~ivvf~~~~Cp~---------C~~~~~~l~~~~i~~~~i~i~~~ 78 (127)
...+++||.+++=++ =+.++|+|..-+++|+.++-...
T Consensus 66 ~PRKlTVy~a~pPgD~l~~a~~~Fr~YVKPIL~AaglDyevv~g~rq 112 (382)
T PF11711_consen 66 LPRKLTVYIAPPPGDGLDVARKYFREYVKPILVAAGLDYEVVEGRRQ 112 (382)
T ss_pred CCceEEEEeeCCCCccHHHHHHHHHHHHHHHHHhhccceEEeccccc
Confidence 356899999977433 24688899999999999876643
No 347
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=34.71 E-value=9.9 Score=22.69 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=33.6
Q ss_pred EEEeCCChhHHHHHHHHHhc-----CCCC--EEEEccCCCCchHHHHHHHHhcCCCcccEEEE
Q psy1889 47 IFSKSYCPYCKMAKDVFQKL-----KVTP--KTVELDHRDDGDSIQDVLLEITGARSVPRVFV 102 (127)
Q Consensus 47 vf~~~~Cp~C~~~~~~l~~~-----~i~~--~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~ 102 (127)
+|.+..-+.++++...++.+ +.+| +++|+..++ +++...++-.+|++.+
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P-------~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQP-------ELAEEDRIVATPTLIK 57 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSH-------SHHTTTEEECHHHHHT
T ss_pred eEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCH-------hHHhHCCeeecceEee
Confidence 56666667777777776553 4454 467777665 3788778888888754
No 348
>PF15616 TerY-C: TerY-C metal binding domain
Probab=34.58 E-value=12 Score=24.53 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=10.4
Q ss_pred EEeCCChhHHHHH
Q psy1889 48 FSKSYCPYCKMAK 60 (127)
Q Consensus 48 f~~~~Cp~C~~~~ 60 (127)
...|+||+|-.+.
T Consensus 75 ~g~PgCP~CGn~~ 87 (131)
T PF15616_consen 75 IGAPGCPHCGNQY 87 (131)
T ss_pred cCCCCCCCCcChh
Confidence 5679999997654
No 349
>KOG2454|consensus
Probab=34.23 E-value=1e+02 Score=24.26 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=28.9
Q ss_pred HHHHhhCCCcEEEEE-----eCCChhHHHHHHHHHhcCCCCEEEE
Q psy1889 35 FVQDLIASEKIVIFS-----KSYCPYCKMAKDVFQKLKVTPKTVE 74 (127)
Q Consensus 35 ~~~~~~~~~~ivvf~-----~~~Cp~C~~~~~~l~~~~i~~~~i~ 74 (127)
-+.++...+-|||=. =++|-||+.++..|...+-+.+.++
T Consensus 209 iiaAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq 253 (583)
T KOG2454|consen 209 IIAALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQ 253 (583)
T ss_pred HHHHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhh
Confidence 345556777788722 2669999999999999887655444
No 350
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=33.71 E-value=46 Score=22.49 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=14.8
Q ss_pred EEEeCCChhHHHHHHHHHhc
Q psy1889 47 IFSKSYCPYCKMAKDVFQKL 66 (127)
Q Consensus 47 vf~~~~Cp~C~~~~~~l~~~ 66 (127)
+|+.|.|+.|-...+.+.++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl 21 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKL 21 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHH
Confidence 58889999999888887664
No 351
>PRK02935 hypothetical protein; Provisional
Probab=33.32 E-value=8.9 Score=24.06 Aligned_cols=17 Identities=18% Similarity=0.714 Sum_probs=14.5
Q ss_pred CChhHHHHHHHHHhcCC
Q psy1889 52 YCPYCKMAKDVFQKLKV 68 (127)
Q Consensus 52 ~Cp~C~~~~~~l~~~~i 68 (127)
+||.|.+..+.|.+...
T Consensus 72 ~CP~C~K~TKmLGrvD~ 88 (110)
T PRK02935 72 ICPSCEKPTKMLGRVDA 88 (110)
T ss_pred ECCCCCchhhhccceee
Confidence 89999999999987554
No 352
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=32.67 E-value=26 Score=19.48 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=9.9
Q ss_pred CCChhHHHHHHHH
Q psy1889 51 SYCPYCKMAKDVF 63 (127)
Q Consensus 51 ~~Cp~C~~~~~~l 63 (127)
|-||.|+.+-.-|
T Consensus 45 PVCP~Ck~iye~l 57 (58)
T PF11238_consen 45 PVCPECKEIYESL 57 (58)
T ss_pred CCCcCHHHHHHhc
Confidence 6699999876544
No 353
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=31.61 E-value=27 Score=25.20 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=20.4
Q ss_pred hCCCcEEE-EEeCCChhHHHHHHHHHhc
Q psy1889 40 IASEKIVI-FSKSYCPYCKMAKDVFQKL 66 (127)
Q Consensus 40 ~~~~~ivv-f~~~~Cp~C~~~~~~l~~~ 66 (127)
-.+.++|+ |++-+||+-....+.++++
T Consensus 100 ~g~RPLVlnFGS~TCPpF~~~l~~f~~l 127 (237)
T PF00837_consen 100 KGNRPLVLNFGSCTCPPFMAKLDAFKRL 127 (237)
T ss_pred cCCCCeEEEcccccchHHHHHHHHHHHH
Confidence 34667777 9999999998766666554
No 354
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.31 E-value=67 Score=18.82 Aligned_cols=22 Identities=0% Similarity=0.070 Sum_probs=18.5
Q ss_pred CChhHHHHHHHHHhcCCCCEEE
Q psy1889 52 YCPYCKMAKDVFQKLKVTPKTV 73 (127)
Q Consensus 52 ~Cp~C~~~~~~l~~~~i~~~~i 73 (127)
-=++|+++..+|++.+++|+.+
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~ 35 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHM 35 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeee
Confidence 3478999999999999988754
No 355
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=30.65 E-value=45 Score=22.45 Aligned_cols=21 Identities=38% Similarity=0.836 Sum_probs=15.7
Q ss_pred EEEEEeCCChhHHHHHHHHHh
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQK 65 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~ 65 (127)
|.+|+..-||+|--..+.|.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~ 21 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEK 21 (201)
T ss_pred CeEEecCcCccHHHHHHHHHH
Confidence 347888999999876666643
No 356
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=30.44 E-value=46 Score=20.79 Aligned_cols=19 Identities=47% Similarity=0.822 Sum_probs=14.6
Q ss_pred CCcccEEEECCeEEeecHH
Q psy1889 94 ARSVPRVFVNGKFIGGGTD 112 (127)
Q Consensus 94 ~~~~P~i~~~g~~igg~~~ 112 (127)
..-+|.+|.||+.||=-+.
T Consensus 79 DECTplvF~n~~LvgWG~~ 97 (102)
T PF11399_consen 79 DECTPLVFKNGKLVGWGDD 97 (102)
T ss_pred CceEEEEEECCEEEEEcHH
Confidence 3468999999999875443
No 357
>PLN02907 glutamate-tRNA ligase
Probab=30.01 E-value=3.4e+02 Score=23.03 Aligned_cols=58 Identities=10% Similarity=0.032 Sum_probs=40.2
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE-CCeEEeecHHHHHHHHc
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV-NGKFIGGGTDVKALYEK 119 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~-~g~~igg~~~l~~~~~~ 119 (127)
..+|+++.-+.++ +..+++..+++|+.+.. .....+|++.. +|..+.++..+..++.+
T Consensus 3 ~kLy~~~~S~~~~-v~~~L~~lgv~~e~~~~----------------~p~GkVPvLv~ddG~~L~ES~AIl~YLa~ 61 (722)
T PLN02907 3 AKLSFPPDSPPLA-VIAAAKVAGVPLTIDPS----------------LKSGSAPTLLFSSGEKLTGTNVLLRYIAR 61 (722)
T ss_pred EEEEECCCCChHH-HHHHHHHcCCCcEEeec----------------CCCCCCcEEEECCCCEEECHHHHHHHHHH
Confidence 4577766544433 66678899999887641 13567999975 77788888777776654
No 358
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=30.00 E-value=1e+02 Score=21.68 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECCe
Q psy1889 55 YCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGK 105 (127)
Q Consensus 55 ~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g~ 105 (127)
....++.+|+++++.-..+.+..+..-+++.+.+.. +...+|.+.+..+
T Consensus 137 ~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~--~~~y~p~iiV~NK 185 (233)
T cd01896 137 DEKTIKAILREYKIHNADVLIREDITVDDLIDVIEG--NRVYIPCLYVYNK 185 (233)
T ss_pred CHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhC--CceEeeEEEEEEC
Confidence 468899999999998888888777766666665542 3567888866443
No 359
>KOG2433|consensus
Probab=29.70 E-value=2.9e+02 Score=21.99 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=44.0
Q ss_pred hCCCcEEEEEe-CCChhHHHHHHHHHh-cCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEECC
Q psy1889 40 IASEKIVIFSK-SYCPYCKMAKDVFQK-LKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNG 104 (127)
Q Consensus 40 ~~~~~ivvf~~-~~Cp~C~~~~~~l~~-~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~g 104 (127)
+++++..+.++ -|=+. ..+.-.|++ +++.-..+.++.-.+-.....+++..+...++|+..=+|
T Consensus 445 i~DKpA~FVGSrQWIGS-tEis~vLn~ll~~~skil~v~sGaEva~~~rELA~HFqt~GTPVMIGGg 510 (577)
T KOG2433|consen 445 IQDKPAKFVGSRQWIGS-TEISFVLNELLKLESKILAVNSGAEVAERVRELARHFQTSGTPVMIGGG 510 (577)
T ss_pred ccCcccceecccceecc-hhHHHHHHHHhccceEEEEeccccHHHHHHHHHHHHhhccCCcEEEccc
Confidence 46677777654 45444 455566666 477888888877665556678899999988899764443
No 360
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=29.52 E-value=1.5e+02 Score=18.55 Aligned_cols=37 Identities=5% Similarity=0.056 Sum_probs=30.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCC
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDD 80 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~ 80 (127)
+|.+++.++|+=..-++.+.+.++.++..+.+..+-+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~ 37 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTT 37 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTST
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccc
Confidence 4678999999999999999999988888888887655
No 361
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=29.03 E-value=84 Score=22.41 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=21.7
Q ss_pred EEeCCChhHHHHHHHHHhcCCC--CEEEEcc
Q psy1889 48 FSKSYCPYCKMAKDVFQKLKVT--PKTVELD 76 (127)
Q Consensus 48 f~~~~Cp~C~~~~~~l~~~~i~--~~~i~i~ 76 (127)
+-+..||.++.++..|++.++. +..+--.
T Consensus 151 ~~t~~~pla~~~R~~Lrk~~~~~~~~~v~S~ 181 (231)
T cd00755 151 SKTSGDPLARKVRKRLRKRGIFFGVPVVYST 181 (231)
T ss_pred eccccCcHHHHHHHHHHHcCCCCCeEEEeCC
Confidence 4457799999999999998885 4444333
No 362
>KOG1734|consensus
Probab=28.55 E-value=27 Score=25.83 Aligned_cols=16 Identities=44% Similarity=0.881 Sum_probs=10.9
Q ss_pred eCCChhHHHHHHHHHh
Q psy1889 50 KSYCPYCKMAKDVFQK 65 (127)
Q Consensus 50 ~~~Cp~C~~~~~~l~~ 65 (127)
.++||||+.-...=+-
T Consensus 270 kqtCPYCKekVdl~rm 285 (328)
T KOG1734|consen 270 KQTCPYCKEKVDLKRM 285 (328)
T ss_pred CCCCchHHHHhhHhhh
Confidence 3889999975544333
No 363
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=28.28 E-value=41 Score=18.05 Aligned_cols=14 Identities=29% Similarity=0.690 Sum_probs=10.9
Q ss_pred eCCChhHHHHHHHH
Q psy1889 50 KSYCPYCKMAKDVF 63 (127)
Q Consensus 50 ~~~Cp~C~~~~~~l 63 (127)
...|+.|+..++--
T Consensus 33 p~RC~~CR~~rk~~ 46 (49)
T PF13451_consen 33 PKRCPSCRQARKQR 46 (49)
T ss_pred CccCHHHHHHHHHh
Confidence 36799999988754
No 364
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=28.18 E-value=2.3e+02 Score=20.34 Aligned_cols=68 Identities=12% Similarity=0.181 Sum_probs=44.6
Q ss_pred hHHHHHHHhhCCC--cEEE--E---EeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEEC
Q psy1889 31 ASKQFVQDLIASE--KIVI--F---SKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103 (127)
Q Consensus 31 ~~~~~~~~~~~~~--~ivv--f---~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~~ 103 (127)
.....+...+++. .|.+ + ...|-+|-.+++..|.+++.....+++...+. +++.+.... .=.++++
T Consensus 19 ~~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~-----~~Ie~~l~~--~d~IyVg 91 (224)
T COG3340 19 HFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPL-----AAIENKLMK--ADIIYVG 91 (224)
T ss_pred hhhHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCH-----HHHHHhhhh--ccEEEEC
Confidence 3345555655553 4444 2 24778899999999999999999999988652 334443322 2367776
Q ss_pred Ce
Q psy1889 104 GK 105 (127)
Q Consensus 104 g~ 105 (127)
|-
T Consensus 92 GG 93 (224)
T COG3340 92 GG 93 (224)
T ss_pred Cc
Confidence 53
No 365
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.92 E-value=1.4e+02 Score=17.81 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=31.1
Q ss_pred HHHHHHhhCCCcEEEEEeCCChh--HHHHHHHHHhcCCCCEEEE
Q psy1889 33 KQFVQDLIASEKIVIFSKSYCPY--CKMAKDVFQKLKVTPKTVE 74 (127)
Q Consensus 33 ~~~~~~~~~~~~ivvf~~~~Cp~--C~~~~~~l~~~~i~~~~i~ 74 (127)
...+...++..++||+.+..+.+ +..++..-++.++++...+
T Consensus 39 ~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 39 ASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred hhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 34577778888888877777765 5678888888888877665
No 366
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=27.72 E-value=76 Score=17.78 Aligned_cols=25 Identities=36% Similarity=0.695 Sum_probs=16.0
Q ss_pred EEECCeEEeecHH-------HHHHHHcCCccc
Q psy1889 100 VFVNGKFIGGGTD-------VKALYEKGELHP 124 (127)
Q Consensus 100 i~~~g~~igg~~~-------l~~~~~~~~L~~ 124 (127)
+|+||..+|-.++ +..+.++|.+..
T Consensus 1 VFlNG~~iG~~~~p~~l~~~lr~~RR~g~i~~ 32 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEELVKTLRNLRRSGKISK 32 (63)
T ss_dssp EEETTEEEEEESSHHHHHHHHHHHHHTTSS-T
T ss_pred CEECCEEEEEEcCHHHHHHHHHHHhhccCCcc
Confidence 5889999887664 445555555543
No 367
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=27.64 E-value=1.9e+02 Score=19.27 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=22.2
Q ss_pred CCcEEE-EEeCCChhHHHHHH-HHHhcCCCCEEE
Q psy1889 42 SEKIVI-FSKSYCPYCKMAKD-VFQKLKVTPKTV 73 (127)
Q Consensus 42 ~~~ivv-f~~~~Cp~C~~~~~-~l~~~~i~~~~i 73 (127)
...+.+ ...+-|++|+...+ +.++++++...|
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I 132 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTI 132 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHcCCCeEEE
Confidence 455666 44688999997655 557788875444
No 368
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=27.44 E-value=2e+02 Score=22.66 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=28.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCC
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHR 78 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~ 78 (127)
+.+|+-|+|+-.-.++.+.+++++.+..++....
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~vsa~eL 184 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGEL 184 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHh
Confidence 4448999999999999999999999887776543
No 369
>KOG3160|consensus
Probab=27.31 E-value=48 Score=23.62 Aligned_cols=18 Identities=22% Similarity=0.658 Sum_probs=14.5
Q ss_pred CCcEEEEEeCCChhHHHH
Q psy1889 42 SEKIVIFSKSYCPYCKMA 59 (127)
Q Consensus 42 ~~~ivvf~~~~Cp~C~~~ 59 (127)
.-.|.+|+-+-||+|.+.
T Consensus 40 ~v~ItlyyEaLCPdc~~F 57 (220)
T KOG3160|consen 40 KVNITLYYEALCPDCSKF 57 (220)
T ss_pred eeEEEEEEEecCccHHHH
Confidence 345777999999999863
No 370
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=27.26 E-value=1.1e+02 Score=24.45 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=17.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCC
Q psy1889 45 IVIFSKSYCPYCKMAKDVFQKLKV 68 (127)
Q Consensus 45 ivvf~~~~Cp~C~~~~~~l~~~~i 68 (127)
+++|.. .|++|..++.+|+++.-
T Consensus 23 ~~~~~~-~~~~~~~~~~~~~~~~~ 45 (515)
T TIGR03140 23 LVLSAG-SHEKSKELLELLDEIAS 45 (515)
T ss_pred EEEEeC-CCchhHHHHHHHHHHHH
Confidence 344654 79999999999988643
No 371
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=27.11 E-value=1.4e+02 Score=23.57 Aligned_cols=30 Identities=13% Similarity=0.334 Sum_probs=20.5
Q ss_pred CcEEEEEeCCChhHHHH----HHHHHhcCCCCEEE
Q psy1889 43 EKIVIFSKSYCPYCKMA----KDVFQKLKVTPKTV 73 (127)
Q Consensus 43 ~~ivvf~~~~Cp~C~~~----~~~l~~~~i~~~~i 73 (127)
-+.++.+ ++||-|.+. .+.+++.|++...+
T Consensus 337 VDAvILt-stCgtCtrcga~m~keiE~~GIPvV~i 370 (431)
T TIGR01917 337 VDAVILT-STUGTCTRCGATMVKEIERAGIPVVHI 370 (431)
T ss_pred CCEEEEc-CCCCcchhHHHHHHHHHHHcCCCEEEE
Confidence 4566664 899999874 45567778876544
No 372
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=26.81 E-value=1e+02 Score=19.30 Aligned_cols=41 Identities=12% Similarity=0.266 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCC
Q psy1889 55 YCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGAR 95 (127)
Q Consensus 55 ~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~ 95 (127)
|=+...+..++.|+.+..+.+..+...+++...+.+.+...
T Consensus 46 Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~ 86 (117)
T PF00763_consen 46 YVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDP 86 (117)
T ss_dssp HHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 34456677788999999999988877778888777776543
No 373
>KOG3267|consensus
Probab=26.74 E-value=9.5 Score=24.11 Aligned_cols=20 Identities=40% Similarity=0.695 Sum_probs=16.9
Q ss_pred cchhhcchhhHHHHHHHcCC
Q psy1889 5 DLEQFNFGLKTSFLETLGAS 24 (127)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (127)
|+++||-|+...|+...+++
T Consensus 27 dl~~fn~g~~~~fiqhtsaa 46 (138)
T KOG3267|consen 27 DLKDFNCGLAHFFIQHTSAA 46 (138)
T ss_pred HHhhccccceeeeeecccee
Confidence 78999999999998876654
No 374
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=26.45 E-value=2.7e+02 Score=21.45 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEEEE-C-CeEEeecHHHHHHH
Q psy1889 56 CKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV-N-GKFIGGGTDVKALY 117 (127)
Q Consensus 56 C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i~~-~-g~~igg~~~l~~~~ 117 (127)
-..++.+|+++++....+-|..+-.-+++.+.+.. +...+|++++ | ...++ .+++..+.
T Consensus 201 ~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~--nrvY~p~l~v~NKiD~~~-~e~~~~l~ 261 (365)
T COG1163 201 EDTVRAILREYRIHNADVLIREDVTLDDLIDALEG--NRVYKPALYVVNKIDLPG-LEELERLA 261 (365)
T ss_pred HHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhh--cceeeeeEEEEecccccC-HHHHHHHH
Confidence 36799999999999988888887766677776665 4668999955 3 33443 55555444
No 375
>COG1590 Uncharacterized conserved protein [Function unknown]
Probab=26.20 E-value=1.2e+02 Score=21.45 Aligned_cols=27 Identities=7% Similarity=0.154 Sum_probs=18.0
Q ss_pred CCChhHHHHHHHhhCCCcEEEEEeCCChh
Q psy1889 27 VMNPASKQFVQDLIASEKIVIFSKSYCPY 55 (127)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~ivvf~~~~Cp~ 55 (127)
.++.++...+...+.... +|+++.|.-
T Consensus 23 ~vD~diiplL~~INs~~~--~~TTSSCSG 49 (208)
T COG1590 23 YVDEDIIPLLDLINSIPN--YYTTSSCSG 49 (208)
T ss_pred CCChhHHHHHHHhcCCCC--eEEeccccc
Confidence 356677777777766555 677777753
No 376
>KOG1467|consensus
Probab=26.05 E-value=3.6e+02 Score=21.95 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=35.7
Q ss_pred HHhhCCCcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCCCcccEE
Q psy1889 37 QDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV 100 (127)
Q Consensus 37 ~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~~~~P~i 100 (127)
.+.+++.++++.+ -||+--..+...-.+.+.+|..+-||-.++.+. +.+.+.+-..++|..
T Consensus 354 ~~KI~dgdvilty-g~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG--~~~lr~Lv~~Ginct 414 (556)
T KOG1467|consen 354 VTKIQDGDVLLTY-GSSSVVNMILLEAKELGKKFRVVVVDSRPNLEG--RKLLRRLVDRGINCT 414 (556)
T ss_pred HHHhhcCCEEEEe-cchHHHHHHHHHHHHhCcceEEEEEeCCCCcch--HHHHHHHHHcCCCeE
Confidence 3346677777633 466665555555566788999888887765332 223333333445555
No 377
>PRK10670 hypothetical protein; Provisional
Probab=25.82 E-value=1.7e+02 Score=19.44 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCCCEEEEccCCCCchHHHHHHHHhcCC
Q psy1889 58 MAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGA 94 (127)
Q Consensus 58 ~~~~~l~~~~i~~~~i~i~~~~~~~~~~~~l~~~~~~ 94 (127)
.+.++|++.+++|+...+++++......++.++..|+
T Consensus 3 ~~~~~L~~~~i~y~~~~~~h~~~~~~~~~~~a~~lgv 39 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYEHDPAETNFGDEVVRKLGL 39 (159)
T ss_pred HHHHHHHHCCCCeEEEeeccCCcccchHHHHHHHhCC
Confidence 4678999999999997766654321112345555553
No 378
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=25.74 E-value=1.6e+02 Score=23.33 Aligned_cols=30 Identities=13% Similarity=0.317 Sum_probs=20.4
Q ss_pred CcEEEEEeCCChhHHHH----HHHHHhcCCCCEEE
Q psy1889 43 EKIVIFSKSYCPYCKMA----KDVFQKLKVTPKTV 73 (127)
Q Consensus 43 ~~ivvf~~~~Cp~C~~~----~~~l~~~~i~~~~i 73 (127)
-+.++.+ ++||-|.+. .+.+++.|++...+
T Consensus 337 VDAVILT-stCgtC~r~~a~m~keiE~~GiPvv~~ 370 (431)
T TIGR01918 337 VDAVILT-STUGTCTRCGATMVKEIERAGIPVVHM 370 (431)
T ss_pred CCEEEEc-CCCCcchhHHHHHHHHHHHcCCCEEEE
Confidence 4566664 889999874 45567778876543
No 379
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=25.20 E-value=22 Score=18.56 Aligned_cols=6 Identities=50% Similarity=1.752 Sum_probs=3.8
Q ss_pred ChhHHH
Q psy1889 53 CPYCKM 58 (127)
Q Consensus 53 Cp~C~~ 58 (127)
||+|..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 677753
No 380
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=24.80 E-value=2.8e+02 Score=20.23 Aligned_cols=39 Identities=8% Similarity=0.233 Sum_probs=31.3
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHhcCC-CCEEEEccCCC
Q psy1889 41 ASEKIVIFSKSYCPYCKMAKDVFQKLKV-TPKTVELDHRD 79 (127)
Q Consensus 41 ~~~~ivvf~~~~Cp~C~~~~~~l~~~~i-~~~~i~i~~~~ 79 (127)
..+.+.++++.+|+-...++.++.+++. ....|+|....
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 4567888999999999999999988765 46777777643
No 381
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=24.75 E-value=1.1e+02 Score=21.06 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=16.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHh
Q psy1889 44 KIVIFSKSYCPYCKMAKDVFQK 65 (127)
Q Consensus 44 ~ivvf~~~~Cp~C~~~~~~l~~ 65 (127)
+|-+|+..-||+|--..+.|.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~ 23 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCR 23 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHH
Confidence 4668889999999876666644
No 382
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=24.31 E-value=2.3e+02 Score=19.16 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=37.2
Q ss_pred hHHHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhcCCC------------CEEEEccCCCCchHHHHHHHHhcCCCccc
Q psy1889 31 ASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVT------------PKTVELDHRDDGDSIQDVLLEITGARSVP 98 (127)
Q Consensus 31 ~~~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~------------~~~i~i~~~~~~~~~~~~l~~~~~~~~~P 98 (127)
++...+.++.. ..+.+=.|+++..=..+++.|+.+++. |...+|... ....-.+.+.+..|+..-=
T Consensus 49 dv~~iL~~L~~-~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-sK~~Hf~~i~~~tgI~y~e 126 (169)
T PF12689_consen 49 DVPEILQELKE-RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG-SKTTHFRRIHRKTGIPYEE 126 (169)
T ss_dssp THHHHHHHHHH-CT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS--HHHHHHHHHHHH---GGG
T ss_pred CHHHHHHHHHH-CCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC-chHHHHHHHHHhcCCChhH
Confidence 33344443332 556664555444338999999998876 334455443 2223455677777877666
Q ss_pred EEEECCe
Q psy1889 99 RVFVNGK 105 (127)
Q Consensus 99 ~i~~~g~ 105 (127)
++|.|++
T Consensus 127 MlFFDDe 133 (169)
T PF12689_consen 127 MLFFDDE 133 (169)
T ss_dssp EEEEES-
T ss_pred EEEecCc
Confidence 8888876
No 383
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=23.47 E-value=37 Score=17.39 Aligned_cols=20 Identities=15% Similarity=0.507 Sum_probs=15.8
Q ss_pred HHHHHHhcCCCcccEEEECC
Q psy1889 85 QDVLLEITGARSVPRVFVNG 104 (127)
Q Consensus 85 ~~~l~~~~~~~~~P~i~~~g 104 (127)
..-+....|...+|.|+..|
T Consensus 5 EsviWHilGY~AmPvIil~G 24 (42)
T TIGR02808 5 ESTIWHVLGYGAMPFIILSG 24 (42)
T ss_pred HHHHHHHhcccccchHHhhh
Confidence 44577778999999998776
No 384
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=23.13 E-value=1.4e+02 Score=21.96 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=18.6
Q ss_pred EEeCCChhHHHHHHHHHh-cCCC
Q psy1889 48 FSKSYCPYCKMAKDVFQK-LKVT 69 (127)
Q Consensus 48 f~~~~Cp~C~~~~~~l~~-~~i~ 69 (127)
+-+..||.++.++..|++ ++++
T Consensus 170 ~~t~~~pla~~~R~~lr~~~~~~ 192 (268)
T PRK15116 170 AKTIQDPLAAKLRERLKSDFGVV 192 (268)
T ss_pred ecccCChHHHHHHHHHHHhhCCC
Confidence 556889999999999998 6775
No 385
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=22.51 E-value=2e+02 Score=18.58 Aligned_cols=24 Identities=0% Similarity=0.046 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCCCEEEEccCCCC
Q psy1889 57 KMAKDVFQKLKVTPKTVELDHRDD 80 (127)
Q Consensus 57 ~~~~~~l~~~~i~~~~i~i~~~~~ 80 (127)
+++.++|++.+++|..++......
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t 25 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGT 25 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCC
Confidence 467788999999999888766544
No 386
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=21.05 E-value=23 Score=24.87 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=9.8
Q ss_pred eCCChhHHHHHH
Q psy1889 50 KSYCPYCKMAKD 61 (127)
Q Consensus 50 ~~~Cp~C~~~~~ 61 (127)
.-|||.|++...
T Consensus 11 MGWCPnaka~e~ 22 (205)
T PF07895_consen 11 MGWCPNAKALET 22 (205)
T ss_pred hCcCcCcCcccc
Confidence 369999998776
No 387
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=20.98 E-value=1.3e+02 Score=18.67 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=27.8
Q ss_pred CCCcEEE-EEeCCChhHHHHHHHHHhcCCCCEEEEccC
Q psy1889 41 ASEKIVI-FSKSYCPYCKMAKDVFQKLKVTPKTVELDH 77 (127)
Q Consensus 41 ~~~~ivv-f~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~ 77 (127)
++.++++ -+.+....|..+...|++.+++...+++..
T Consensus 8 ~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~ 45 (124)
T PF02780_consen 8 EGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRT 45 (124)
T ss_dssp SSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEE
Confidence 3455666 344677889999999999999888777654
No 388
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=20.92 E-value=84 Score=17.86 Aligned_cols=11 Identities=55% Similarity=1.331 Sum_probs=4.7
Q ss_pred EEEEeCCChhHHH
Q psy1889 46 VIFSKSYCPYCKM 58 (127)
Q Consensus 46 vvf~~~~Cp~C~~ 58 (127)
.+|+ .||+|+.
T Consensus 53 ~~~G--~CP~C~~ 63 (70)
T PF11793_consen 53 PIFG--ECPYCSS 63 (70)
T ss_dssp --EE--E-TTT-S
T ss_pred cccc--CCcCCCC
Confidence 3455 4999974
No 389
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=20.82 E-value=1.7e+02 Score=22.10 Aligned_cols=28 Identities=7% Similarity=0.046 Sum_probs=19.3
Q ss_pred eCCChhHHHHHHHHHhcC-----CCCEEEEccC
Q psy1889 50 KSYCPYCKMAKDVFQKLK-----VTPKTVELDH 77 (127)
Q Consensus 50 ~~~Cp~C~~~~~~l~~~~-----i~~~~i~i~~ 77 (127)
--+|+.|++++.+|+.+. +.|.=+||+.
T Consensus 82 ELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 82 ELGSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred EECCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 457999999999998763 2344455543
No 390
>PF14816 FAM178: Family of unknown function, FAM178
Probab=20.41 E-value=2.3e+02 Score=22.00 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=43.4
Q ss_pred hcchhhHHHHHHHcCCCC-CCChhHHHHHHHhhCCCcEEE---EEeCCChhHHHHHHHHHhcCCCCEE
Q psy1889 9 FNFGLKTSFLETLGASSK-VMNPASKQFVQDLIASEKIVI---FSKSYCPYCKMAKDVFQKLKVTPKT 72 (127)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv---f~~~~Cp~C~~~~~~l~~~~i~~~~ 72 (127)
++-+++.+++..|+-.+. .++..+-..+-++.-++-... =..+|||.=..++..|-.+|+.+..
T Consensus 148 CP~pll~WLFqlmsvh~d~~vs~~a~~~L~~is~~~~~~~s~~~~~~W~PSl~di~~vf~nmGa~f~~ 215 (377)
T PF14816_consen 148 CPVPLLQWLFQLMSVHPDCIVSSQALQTLWDISVDNLFRQSDEDSIPWCPSLQDIAQVFVNMGASFPS 215 (377)
T ss_pred CChHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhccccccCCCCcCCccCCHHHHHHHHHHhcCCccc
Confidence 788888888888877665 244555555555432222122 1139999999999999999986654
No 391
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=20.29 E-value=1.1e+02 Score=17.66 Aligned_cols=19 Identities=37% Similarity=0.775 Sum_probs=12.7
Q ss_pred eCCChhHHH-HHHHHHhcCC
Q psy1889 50 KSYCPYCKM-AKDVFQKLKV 68 (127)
Q Consensus 50 ~~~Cp~C~~-~~~~l~~~~i 68 (127)
+-=||.|+. ++..+++.++
T Consensus 15 tLPC~~Cr~HA~~ai~kNNi 34 (70)
T PF04805_consen 15 TLPCPECRIHAKEAIQKNNI 34 (70)
T ss_pred cCCCHHHHHHHHHHHHhcCc
Confidence 455999986 5556666554
No 392
>KOG0342|consensus
Probab=20.16 E-value=1.8e+02 Score=23.60 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=34.4
Q ss_pred HHHHHHhhCCCcEEEEEeCCChhHHHHHHHHHhcCCCCEEEEccCCC
Q psy1889 33 KQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD 79 (127)
Q Consensus 33 ~~~~~~~~~~~~ivvf~~~~Cp~C~~~~~~l~~~~i~~~~i~i~~~~ 79 (127)
..++++.....+|+||. ++|..-+-...+|+.+.++..+++-....
T Consensus 321 ~~~LKk~~~~~KiiVF~-sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q 366 (543)
T KOG0342|consen 321 YTFLKKNIKRYKIIVFF-STCMSVKFHAELLNYIDLPVLEIHGKQKQ 366 (543)
T ss_pred HHHHHHhcCCceEEEEe-chhhHHHHHHHHHhhcCCchhhhhcCCcc
Confidence 35566666668888885 88888888999999888877776655543
Done!