RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1889
(127 letters)
>gnl|CDD|239511 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human
class 1 and 2 (h_1_2)-like subfamily; composed of
proteins similar to human GRXs, approximately 10 kDa in
size, and proteins containing a GRX or GRX-like domain.
GRX is a glutathione (GSH) dependent reductase,
catalyzing the disulfide reduction of target proteins
such as ribonucleotide reductase. It contains a redox
active CXXC motif in a TRX fold and uses a similar
dithiol mechanism employed by TRXs for intramolecular
disulfide bond reduction of protein substrates. Unlike
TRX, GRX has preference for mixed GSH disulfide
substrates, in which it uses a monothiol mechanism where
only the N-terminal cysteine is required. The flow of
reducing equivalents in the GRX system goes from NADPH
-> GSH reductase -> GSH -> GRX -> protein substrates. By
altering the redox state of target proteins, GRX is
involved in many cellular functions including DNA
synthesis, signal transduction and the defense against
oxidative stress. Different classes are known including
human GRX1 and GRX2, which are members of this
subfamily. Also included in this subfamily are the
N-terminal GRX domains of proteins similar to human
thioredoxin reductase 1 and 3.
Length = 82
Score = 136 bits (346), Expect = 2e-43
Identities = 46/82 (56%), Positives = 59/82 (71%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
+V+FSKSYCPYCK AK + ++L V P VELD +DG IQD L E+TG R+VP VF+
Sbjct: 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIG 60
Query: 104 GKFIGGGTDVKALYEKGELHPL 125
GKFIGG D+ AL++ G+L L
Sbjct: 61 GKFIGGCDDLMALHKSGKLVKL 82
>gnl|CDD|233765 TIGR02180, GRX_euk, Glutaredoxin. Glutaredoxins are
thioltransferases (disulfide reductases) which utilize
glutathione and NADPH as cofactors. Oxidized glutathione
is regenerated by glutathione reductase. Together these
components compose the glutathione system. Glutaredoxins
utilize the CXXC motif common to thioredoxins and are
involved in multiple cellular processes including
protection from redox stress, reduction of critical
enzymes such as ribonucleotide reductase and the
generation of reduced sulfur for iron sulfur cluster
formation. Glutaredoxins are capable of reduction of
mixed disulfides of glutathione as well as the formation
of glutathione mixed disulfides. This model represents
eukaryotic glutaredoxins and includes sequences from
fungi, plants and metazoans as well as viruses.
Length = 84
Score = 120 bits (302), Expect = 8e-37
Identities = 48/84 (57%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKLKVTP--KTVELDHRDDGDSIQDVLLEITGARSVPRVFV 102
+V+FSKSYCPYCK AK++ KL V P + VELD +G IQD L EITG R+VP +F+
Sbjct: 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60
Query: 103 NGKFIGGGTDVKALYEKGELHPLV 126
NGKFIGG +D+ ALY+ G+L L+
Sbjct: 61 NGKFIGGCSDLLALYKSGKLAELL 84
>gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX,
approximately 10 kDa in size, and proteins containing a
GRX or GRX-like domain. GRX is a glutathione (GSH)
dependent reductase, catalyzing the disulfide reduction
of target proteins such as ribonucleotide reductase. It
contains a redox active CXXC motif in a TRX fold and
uses a similar dithiol mechanism employed by TRXs for
intramolecular disulfide bond reduction of protein
substrates. Unlike TRX, GRX has preference for mixed GSH
disulfide substrates, in which it uses a monothiol
mechanism where only the N-terminal cysteine is
required. The flow of reducing equivalents in the GRX
system goes from NADPH -> GSH reductase -> GSH -> GRX ->
protein substrates. By altering the redox state of
target proteins, GRX is involved in many cellular
functions including DNA synthesis, signal transduction
and the defense against oxidative stress. Different
classes are known including human GRX1 and GRX2, as well
as E. coli GRX1 and GRX3, which are members of this
family. E. coli GRX2, however, is a 24-kDa protein that
belongs to the GSH S-transferase (GST) family.
Length = 72
Score = 91.0 bits (227), Expect = 2e-25
Identities = 35/75 (46%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
K+V+FSKS CPYCK AK + + L + + E+D +DG+ +++ L E++G +VP++F+N
Sbjct: 1 KVVVFSKSTCPYCKRAKRLLESLGI--EFEEIDILEDGE-LREELKELSGWPTVPQIFIN 57
Query: 104 GKFIGGGTDVKALYE 118
G+FIGG D+KAL+E
Sbjct: 58 GEFIGGYDDLKALHE 72
>gnl|CDD|223767 COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational
modification, protein turnover, chaperones].
Length = 80
Score = 79.7 bits (197), Expect = 7e-21
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
+ I++K CPYCK AK + + V + +++D D+ + ++++ G R+VP++F+
Sbjct: 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDD-DEPEEAREMVKRGKGQRTVPQIFIG 60
Query: 104 GKFIGGGTDVKALYEKGEL 122
GK +GG D+ AL KG+L
Sbjct: 61 GKHVGGCDDLDALEAKGKL 79
>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin.
Length = 60
Score = 77.1 bits (191), Expect = 4e-20
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNG 104
+V+F+K CP+CK AK + L V + +++ D+ I++ L E++G +VP+VF++G
Sbjct: 1 VVLFTKPTCPFCKRAKRLLDSLGVKFEEIDV---DEDPEIREELKELSGWPTVPQVFIDG 57
Query: 105 KFI 107
+ I
Sbjct: 58 EHI 60
>gnl|CDD|233771 TIGR02189, GlrX-like_plant, Glutaredoxin-like family. This family
of glutaredoxin-like proteins is aparrently limited to
plants. Multiple isoforms are found in A. thaliana and
O.sativa.
Length = 99
Score = 72.5 bits (178), Expect = 8e-18
Identities = 32/91 (35%), Positives = 52/91 (57%)
Query: 36 VQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGAR 95
V+ +++ + +VIFS+S C C + K + L V P E+D G I++ L + +
Sbjct: 1 VRRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSP 60
Query: 96 SVPRVFVNGKFIGGGTDVKALYEKGELHPLV 126
+VP VFV GK +GG +V AL+ G L P++
Sbjct: 61 AVPAVFVGGKLVGGLENVMALHISGSLVPML 91
>gnl|CDD|233766 TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are
thioltransferases (disulfide reductases) which utilize
glutathione and NADPH as cofactors. Oxidized glutathione
is regenerated by glutathione reductase. Together these
components compose the glutathione system. Glutaredoxins
utilize the CXXC motif common to thioredoxins and are
involved in multiple cellular processes including
protection from redox stress, reduction of critical
enzymes such as ribonucleotide reductase and the
generation of reduced sulfur for iron sulfur cluster
formation. Glutaredoxins are capable of reduction of
mixed disulfides of glutathione as well as the formation
of glutathione mixed disulfides. This family of
glutaredoxins includes the E. coli protein GrxC (Grx3)
which appears to have a secondary role in reducing
ribonucleotide reductase (in the absence of GrxA)
possibly indicating a role in the reduction of other
protein disulfides [Energy metabolism, Electron
transport].
Length = 79
Score = 66.9 bits (164), Expect = 5e-16
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNG 104
+ I++K YCPYC AK + VT + +D +++D +++ +G R+VP++F+
Sbjct: 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVD---GDPALRDEMMQRSGRRTVPQIFIGD 57
Query: 105 KFIGGGTDVKALYEKGELHPL 125
+GG D+ AL +G+L PL
Sbjct: 58 VHVGGCDDLYALDREGKLDPL 78
>gnl|CDD|239510 cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX
bacterial class 1 and 3 (b_1_3)-like subfamily; composed
of bacterial GRXs, approximately 10 kDa in size, and
proteins containing a GRX or GRX-like domain. GRX is a
glutathione (GSH) dependent reductase, catalyzing the
disulfide reduction of target proteins such as
ribonucleotide reductase. It contains a redox active
CXXC motif in a TRX fold and uses a similar dithiol
mechanism employed by TRXs for intramolecular disulfide
bond reduction of protein substrates. Unlike TRX, GRX
has preference for mixed GSH disulfide substrates, in
which it uses a monothiol mechanism where only the
N-terminal cysteine is required. The flow of reducing
equivalents in the GRX system goes from NADPH -> GSH
reductase -> GSH -> GRX -> protein substrates. By
altering the redox state of target proteins, GRX is
involved in many cellular functions including DNA
synthesis, signal transduction and the defense against
oxidative stress. Different classes are known including
E. coli GRX1 and GRX3, which are members of this
subfamily.
Length = 75
Score = 63.4 bits (155), Expect = 1e-14
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGAR-SVPRVFV 102
K+ I++K CPYC AK + K V + +++ D ++++ ++ +G R +VP++F+
Sbjct: 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDV---DGDPALREEMINRSGGRRTVPQIFI 57
Query: 103 NGKFIGGGTDVKALYEKG 120
IGG D+ AL KG
Sbjct: 58 GDVHIGGCDDLYALERKG 75
>gnl|CDD|239327 cd03029, GRX_hybridPRX5, Glutaredoxin (GRX) family, PRX5 hybrid
subfamily; composed of hybrid proteins containing
peroxiredoxin (PRX) and GRX domains, which is found in
some pathogenic bacteria and cyanobacteria. PRXs are
thiol-specific antioxidant (TSA) proteins that confer a
protective antioxidant role in cells through their
peroxidase activity in which hydrogen peroxide,
peroxynitrate, and organic hydroperoxides are reduced
and detoxified using reducing equivalents derived from
either thioredoxin, glutathione, trypanothione and AhpF.
GRX is a glutathione (GSH) dependent reductase,
catalyzing the disulfide reduction of target proteins.
PRX-GRX hybrid proteins from Haemophilus influenza and
Neisseria meningitis exhibit GSH-dependent peroxidase
activity. The flow of reducing equivalents in the
catalytic cycle of the hybrid protein goes from NADPH ->
GSH reductase -> GSH -> GRX domain of hybrid -> PRX
domain of hybrid -> peroxide substrate.
Length = 72
Score = 59.8 bits (145), Expect = 3e-13
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 43 EKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV 102
E + +F+K CP+C AK Q+ ++ + + L G S++ V TGA +VP+VF+
Sbjct: 1 ESVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAV----TGAMTVPQVFI 56
Query: 103 NGKFIGGGTDVKA 115
+G+ IGG D++
Sbjct: 57 DGELIGGSDDLEK 69
>gnl|CDD|131245 TIGR02190, GlrX-dom, Glutaredoxin-family domain. This C-terminal
domain with homology to glutaredoxin is fused to an
N-terminal peroxiredoxin-like domain.
Length = 79
Score = 55.6 bits (134), Expect = 2e-11
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 41 ASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRV 100
E +V+F+K CP+C AK ++ + + L + G S++ +TGA +VP+V
Sbjct: 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLR----AVTGATTVPQV 61
Query: 101 FVNGKFIGGGTDVKA 115
F+ GK IGG +++A
Sbjct: 62 FIGGKLIGGSDELEA 76
>gnl|CDD|182607 PRK10638, PRK10638, glutaredoxin 3; Provisional.
Length = 83
Score = 54.4 bits (131), Expect = 4e-11
Identities = 25/85 (29%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSI-QDVLLEITGARSVPRVFV 102
+ I++K+ CP+C AK + V+ + + +D GD+ ++ +++ +G +VP++F+
Sbjct: 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPID----GDAAKREEMIKRSGRTTVPQIFI 58
Query: 103 NGKFIGGGTDVKALYEKGELHPLVQ 127
+ + IGG D+ AL +G L PL++
Sbjct: 59 DAQHIGGCDDLYALDARGGLDPLLK 83
>gnl|CDD|165343 PHA03050, PHA03050, glutaredoxin; Provisional.
Length = 108
Score = 55.4 bits (133), Expect = 5e-11
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 32 SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTP---KTVELDHRDDGDSIQDVL 88
+++FVQ +A+ K+ IF K CP+C+ A D+ K + V++ + ++D
Sbjct: 2 AEEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYF 61
Query: 89 LEITGARSVPRVFVNGKFIGGGTDV 113
+ITG R+VPR+F IGG +D+
Sbjct: 62 EQITGGRTVPRIFFGKTSIGGYSDL 86
>gnl|CDD|239325 cd03027, GRX_DEP, Glutaredoxin (GRX) family, Dishevelled, Egl-10,
and Pleckstrin (DEP) subfamily; composed of
uncharacterized proteins containing a GRX domain and
additional domains DEP and DUF547, both of which have
unknown functions. GRX is a glutathione (GSH) dependent
reductase containing a redox active CXXC motif in a TRX
fold. It has preference for mixed GSH disulfide
substrates, in which it uses a monothiol mechanism where
only the N-terminal cysteine is required. By altering
the redox state of target proteins, GRX is involved in
many cellular functions.
Length = 73
Score = 51.3 bits (123), Expect = 8e-10
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELD-HRDDGDSIQDVLLEITGARSVPRVFV 102
++ I+S+ C C + ++ + + +D + L E TG+ VP++F
Sbjct: 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFP----ERKAELEERTGSSVVPQIFF 57
Query: 103 NGKFIGGGTDVKALYE 118
N K +GG TD+K+L E
Sbjct: 58 NEKLVGGLTDLKSLEE 73
>gnl|CDD|239329 cd03031, GRX_GRX_like, Glutaredoxin (GRX) family, GRX-like domain
containing protein subfamily; composed of
uncharacterized eukaryotic proteins containing a
GRX-like domain having only one conserved cysteine,
aligning to the C-terminal cysteine of the CXXC motif of
GRXs. This subfamily is predominantly composed of plant
proteins. GRX is a glutathione (GSH) dependent
reductase, catalyzing the disulfide reduction of target
proteins via a redox active CXXC motif using a similar
dithiol mechanism employed by TRXs. GRX has preference
for mixed GSH disulfide substrates, in which it uses a
monothiol mechanism where only the N-terminal cysteine
is required. Proteins containing only the C-terminal
cysteine are generally redox inactive.
Length = 147
Score = 49.5 bits (119), Expect = 1e-08
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 56 CKMAKDVFQKLKVTPKTVELD---HRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTD 112
C + + + +V K E D + ++++L A S+PRVFV+G+++GG +
Sbjct: 19 CNNVRAILESFRV--KFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEE 76
Query: 113 VKALYEKGELHPLVQ 127
V L E GEL L++
Sbjct: 77 VLRLNESGELRKLLK 91
>gnl|CDD|239274 cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small
monomeric protein with a conserved redox active CXXC
motif within a TRX fold, characterized by a glutaredoxin
(GRX)-like sequence and TRX-like activity profile. In
vitro, it displays protein disulfide reductase activity
that is dependent on TRX reductase, not glutathione
(GSH). It is part of the NrdHIEF operon, where NrdEF
codes for class Ib ribonucleotide reductase (RNR-Ib), an
efficient enzyme at low oxygen levels. Under these
conditions when GSH is mostly conjugated to spermidine,
NrdH can still function and act as a hydrogen donor for
RNR-Ib. It has been suggested that the NrdHEF system may
be the oldest RNR reducing system, capable of
functioning in a microaerophilic environment, where GSH
was not yet available. NrdH from Corynebacterium
ammoniagenes can form domain-swapped dimers, although it
is unknown if this happens in vivo. Domain-swapped
dimerization, which results in the blocking of the TRX
reductase binding site, could be a mechanism for
regulating the oxidation state of the protein.
Length = 73
Score = 47.6 bits (114), Expect = 2e-08
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
++ +++K CPYCK K + + + V++D + + L ++ G RSVP V +
Sbjct: 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEA---LEELKKLNGYRSVPVVVIG 57
Query: 104 GKFIGG 109
+ + G
Sbjct: 58 DEHLSG 63
>gnl|CDD|183036 PRK11200, grxA, glutaredoxin 1; Provisional.
Length = 85
Score = 47.3 bits (113), Expect = 3e-08
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 24/88 (27%)
Query: 43 EKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDD-----------GDSIQDVLLEI 91
+VIF + CPYC AK++ +KL + RDD G S D LE
Sbjct: 1 MFVVIFGRPGCPYCVRAKELAEKLS--------EERDDFDYRYVDIHAEGISKAD--LEK 50
Query: 92 TGAR---SVPRVFVNGKFIGGGTDVKAL 116
T + +VP++FV+ K IGG TD +A
Sbjct: 51 TVGKPVETVPQIFVDQKHIGGCTDFEAY 78
>gnl|CDD|131251 TIGR02196, GlrX_YruB, Glutaredoxin-like protein, YruB-family. This
glutaredoxin-like protein family contains the conserved
CxxC motif and includes the Clostridium pasteurianum
protein YruB which has been cloned from a rubredoxin
operon. Somewhat related to NrdH, it is unknown whether
this protein actually interacts with
glutathione/glutathione reducatase, or, like NrdH, some
other reductant system.
Length = 74
Score = 43.9 bits (104), Expect = 5e-07
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
K+ +++ +CP CK AK+ + E+D D + ++V L++ G R VP + +
Sbjct: 1 KVKVYTTPWCPPCKKAKEYLTSKGI--AFEEIDVEKDSAAREEV-LKVLGQRGVPVIVIG 57
Query: 104 GKFIGG 109
K I G
Sbjct: 58 HKIIVG 63
>gnl|CDD|223355 COG0278, COG0278, Glutaredoxin-related protein [Posttranslational
modification, protein turnover, chaperones].
Length = 105
Score = 43.0 bits (102), Expect = 2e-06
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 34 QFVQDLIASEKIVIFSKSY--CPYCKMAKDVFQKLK----VTPKTVE-LDHRDDGDSIQD 86
+Q I +V+F K P C + Q L V V+ L I+
Sbjct: 6 DRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD----PEIRQ 61
Query: 87 VLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
L E + + P+++VNG+F+GG V+ +Y+ GEL L++
Sbjct: 62 GLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQSGELQTLLK 102
>gnl|CDD|131238 TIGR02183, GRXA, Glutaredoxin, GrxA family. Glutaredoxins are
thioltransferases (disulfide reductases) which utilize
glutathione and NADPH as cofactors. Oxidized glutathione
is regenerated by glutathione reductase. Together these
components compose the glutathione system. Glutaredoxins
utilize the CXXC motif common to thioredoxins and are
involved in multiple cellular processes including
protection from redox stress, reduction of critical
enzymes such as ribonucleotide reductase and the
generation of reduced sulfur for iron sulfur cluster
formation. Glutaredoxins are capable of reduction of
mixed disulfides of glutathione as well as the formation
of glutathione mixed disulfides. This model includes the
E. coli glyutaredoxin GrxA which appears to have primary
responsibility for the reduction of ribonucleotide
reductase.
Length = 86
Score = 41.7 bits (98), Expect = 4e-06
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD---DGDSIQDVLLEITGAR---SVP 98
+VIF + CPYC AK + +KL + E + D +G S D LE T + +VP
Sbjct: 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKAD--LEKTVGKPVETVP 59
Query: 99 RVFVNGKFIGGGTDVKAL 116
++FV+ K +GG TD + L
Sbjct: 60 QIFVDEKHVGGCTDFEQL 77
>gnl|CDD|239326 cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family, PKC-interacting
cousin of TRX (PICOT)-like subfamily; composed of PICOT
and GRX-PICOT-like proteins. The non-PICOT members of
this family contain only the GRX-like domain, whereas
PICOT contains an N-terminal TRX-like domain followed by
one to three GRX-like domains. It is interesting to note
that PICOT from plants contain three repeats of the
GRX-like domain, metazoan proteins (except for insect)
have two repeats, while fungal sequences contain only
one copy of the domain. PICOT is a protein that
interacts with protein kinase C (PKC) theta, a calcium
independent PKC isoform selectively expressed in
skeletal muscle and T lymphocytes. PICOT inhibits the
activation of c-Jun N-terminal kinase and the
transcription factors, AP-1 and NF-kB, induced by PKC
theta or T-cell activating stimuli. Both GRX and TRX
domains of PICOT are required for its activity.
Characterized non-PICOT members of this family include
CXIP1, a CAX-interacting protein in Arabidopsis
thaliana, and PfGLP-1, a GRX-like protein from
Plasmodium falciparum.
Length = 90
Score = 39.4 bits (93), Expect = 3e-05
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 36 VQDLIASEKIVIFSKSY--CPYCKMAKDVFQKLKVTPKTVELDHRD--DGDSIQDVLLEI 91
++ LI +V+F K P C ++ V Q L V+ D + + ++ L E
Sbjct: 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQL--GVDFGTFDILEDEEVRQGLKEY 58
Query: 92 TGARSVPRVFVNGKFIGGGTDVKALYEKGEL 122
+ + P+++VNG+ +GG VK ++E GEL
Sbjct: 59 SNWPTFPQLYVNGELVGGCDIVKEMHESGEL 89
>gnl|CDD|188046 TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family. The
gene for the member of this glutaredoxin family in E.
coli, originally designated ydhD, is now designated
grxD. Its protein, Grx4, is a monothiol glutaredoxin
similar to Grx5 of yeast, which is involved in
iron-sulfur cluster formation [Energy metabolism,
Electron transport].
Length = 97
Score = 39.0 bits (92), Expect = 5e-05
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 33 KQFVQDLIASEKIVIFSKS-----YCPYCKMAKDVFQKLKVTPKTVE-LDHRDDGDSIQD 86
+ +++ IA +V++ K C + A + V V L+ I+
Sbjct: 2 IERIKEQIAENPVVLYMKGTPQFPQCGFSARAVQILNACGVPFAYVNVLED----PEIRQ 57
Query: 87 VLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLV 126
+ E + ++P+++V G+F+GG + +Y+ GEL L+
Sbjct: 58 GIKEYSNWPTIPQLYVKGEFVGGCDIIMEMYQSGELQTLL 97
>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large,
diverse group of proteins containing a TRX-fold. Many
members contain a classic TRX domain with a redox active
CXXC motif. They function as protein disulfide
oxidoreductases (PDOs), altering the redox state of
target proteins via the reversible oxidation of their
active site dithiol. The PDO members of this superfamily
include TRX, protein disulfide isomerase (PDI),
tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial
Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein
families. Members of the superfamily that do not
function as PDOs but contain a TRX-fold domain include
phosducins, peroxiredoxins and glutathione (GSH)
peroxidases, SCO proteins, GSH transferases (GST,
N-terminal domain), arsenic reductases, TRX-like
ferredoxins and calsequestrin, among others.
Length = 69
Score = 35.4 bits (81), Expect = 7e-04
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQDVLLEITGARSVPRVFVN 103
+V+F +CP+C+ + V +L + K V+ + D D D + L+ G VP + V
Sbjct: 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVF 60
Query: 104 GKFIG 108
G IG
Sbjct: 61 GPGIG 65
>gnl|CDD|139206 PRK12759, PRK12759, bifunctional
gluaredoxin/ribonucleoside-diphosphate reductase subunit
beta; Provisional.
Length = 410
Score = 36.9 bits (85), Expect = 0.001
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSI-------QDVLLEITGARS 96
++ I++K+ CP+C +AK F + + LD DD +++LL R+
Sbjct: 3 EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLD--DDVKRAEFYAEVNKNILLVEEHIRT 60
Query: 97 VPRVFVNGKFIGGGTDVKA 115
VP++FV IGG ++ A
Sbjct: 61 VPQIFVGDVHIGGYDNLMA 79
>gnl|CDD|240250 PTZ00062, PTZ00062, glutaredoxin; Provisional.
Length = 204
Score = 35.5 bits (82), Expect = 0.003
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 6 LEQFNFGLKTSFLETLGASSKVMNPASKQFVQDLIASEKIVIF---SKSYCPYCKMAKDV 62
LE N SF+ + K ++ LI + KI++F SK++ P+C+ + V
Sbjct: 78 LEGCNTSTLVSFIRGWAQKGSSEDTVEK--IERLIRNHKILLFMKGSKTF-PFCRFSNAV 134
Query: 63 FQKL---KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEK 119
L V +T + +D D +++ L + + P+++VNG+ IGG +K LYE
Sbjct: 135 VNMLNSSGVKYETYNI--FEDPD-LREELKVYSNWPTYPQLYVNGELIGGHDIIKELYES 191
Query: 120 GEL 122
L
Sbjct: 192 NSL 194
>gnl|CDD|129505 TIGR00411, redox_disulf_1, small redox-active disulfide protein 1.
This protein is homologous to a family of proteins that
includes thioredoxins, glutaredoxins, protein-disulfide
isomerases, and others, some of which have several such
domains. The sequence of this protein at the
redox-active disufide site, CPYC, matches glutaredoxins
rather than thioredoxins, although its overall sequence
seems closer to thioredoxins. It is suggested to be a
ribonucleotide-reducing system component distinct from
thioredoxin or glutaredoxin [Unknown function, General].
Length = 82
Score = 34.1 bits (78), Expect = 0.003
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKL-KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV 102
KI +F+ CPYC AK V +++ K VE+++ + ++ Q + G +VP + +
Sbjct: 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAME--YGIMAVPAIVI 59
Query: 103 NGKF-IGGGTDVKALYE 118
NG G + L E
Sbjct: 60 NGDVEFIGAPTKEELVE 76
>gnl|CDD|239271 cd02973, TRX_GRX_like, Thioredoxin (TRX)-Glutaredoxin (GRX)-like
family; composed of archaeal and bacterial proteins that
show similarity to both TRX and GRX, including the
C-terminal TRX-fold subdomain of Pyrococcus furiosus
protein disulfide oxidoreductase (PfPDO). All members
contain a redox-active CXXC motif and may function as
PDOs. The archaeal proteins Mj0307 and Mt807 show
structures more similar to GRX, but activities more
similar to TRX. Some members of the family are similar
to PfPDO in that they contain a second CXXC motif
located in a second TRX-fold subdomain at the
N-terminus; the superimposable N- and C-terminal TRX
subdomains form a compact structure. PfPDO is postulated
to be the archaeal counterpart of bacterial DsbA and
eukaryotic protein disulfide isomerase (PDI). The
C-terminal CXXC motif of PfPDO is required for its
oxidase, reductase and isomerase activities. Also
included in the family is the C-terminal TRX-fold
subdomain of the N-terminal domain (NTD) of bacterial
AhpF, which has a similar fold as PfPDO with two
TRX-fold subdomains but without the second CXXC motif.
Length = 67
Score = 32.2 bits (74), Expect = 0.011
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQDVLLEITGARSVPRVFV 102
I +F CPYC A ++ + D D L + G SVP + +
Sbjct: 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNIS--AEMIDAAEFPD-LADEYGVMSVPAIVI 58
Query: 103 NGKFIGGG 110
NGK G
Sbjct: 59 NGKVEFVG 66
>gnl|CDD|218740 pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These
proteins are related to the pfam00462 family.
Length = 76
Score = 32.2 bits (74), Expect = 0.011
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSI 84
+ ++ K C C+ AK+V +L+ +L+ D D D
Sbjct: 1 TLTLYGKPGCHLCEGAKEVLAELEAALG-FDLERIDIDDDEE 41
>gnl|CDD|131255 TIGR02200, GlrX_actino, Glutaredoxin-like protein. This family of
glutaredoxin-like proteins is limited to the
Actinobacteria and contains the conserved CxxC motif.
Length = 77
Score = 32.1 bits (73), Expect = 0.016
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 14/72 (19%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDG----DSIQDVLLEITGARSVPR 99
I ++ ++C YC KL + V+++ + S+ + G +VP
Sbjct: 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNN------GNMTVPT 54
Query: 100 VFVNGKFIGGGT 111
V KF G
Sbjct: 55 V----KFADGSF 62
>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I,
which includes proteins that exclusively encode a TRX
domain; and Group II, which are composed of fusion
proteins of TRX and additional domains. Group I TRX is a
small ancient protein that alter the redox state of
target proteins via the reversible oxidation of an
active site dithiol, present in a CXXC motif, partially
exposed at the protein's surface. TRX reduces protein
disulfide bonds, resulting in a disulfide bond at its
active site. Oxidized TRX is converted to the active
form by TRX reductase, using reducing equivalents
derived from either NADPH or ferredoxins. By altering
their redox state, TRX regulates the functions of at
least 30 target proteins, some of which are enzymes and
transcription factors. It also plays an important role
in the defense against oxidative stress by directly
reducing hydrogen peroxide and certain radicals, and by
serving as a reductant for peroxiredoxins. At least two
major types of functional TRXs have been reported in
most organisms; in eukaryotes, they are located in the
cytoplasm and the mitochondria. Higher plants contain
more types (at least 20 TRX genes have been detected in
the genome of Arabidopsis thaliana), two of which (types
f amd m) are located in the same compartment, the
chloroplast. Also included in the alignment are TRX-like
domains which show sequence homology to TRX but do not
contain the redox active CXXC motif. Group II proteins,
in addition to either a redox active TRX or a TRX-like
domain, also contain additional domains, which may or
may not possess homology to known proteins.
Length = 93
Score = 31.4 bits (72), Expect = 0.035
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 37 QDLIASEKIVI--FSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGA 94
++LI S K V+ F +C CK V ++L V+ D D ++ E G
Sbjct: 4 EELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDV-DENPELAEEY-GV 61
Query: 95 RSVP--RVFVNGKFIG---GGTDVKALYEK 119
RS+P F NGK + G + L E
Sbjct: 62 RSIPTFLFFKNGKEVDRVVGADPKEELEEF 91
>gnl|CDD|182759 PRK10824, PRK10824, glutaredoxin-4; Provisional.
Length = 115
Score = 30.6 bits (69), Expect = 0.10
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 98 PRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
P+++V+G+ +GG V +Y++GEL L++
Sbjct: 72 PQLWVDGELVGGCDIVIEMYQRGELQQLIK 101
>gnl|CDD|224565 COG1651, DsbG, Protein-disulfide isomerase [Posttranslational
modification, protein turnover, chaperones].
Length = 244
Score = 30.6 bits (69), Expect = 0.14
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 21 LGASSKVMNPASKQFVQ--DLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHR 78
LG + + + V + A +V F CPYCK A +K + V L R
Sbjct: 62 LGVTIVLYLTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLR 121
Query: 79 D 79
+
Sbjct: 122 E 122
Score = 26.4 bits (58), Expect = 5.3
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 88 LLEITGARSVPRVFVNGKFIGGGTDVKAL 116
L + G P VNGK + G D+ L
Sbjct: 207 LAQQLGVNGTPTFIVNGKLVPGLPDLDEL 235
>gnl|CDD|225877 COG3340, PepE, Peptidase E [Amino acid transport and metabolism].
Length = 224
Score = 30.4 bits (69), Expect = 0.16
Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 22/119 (18%)
Query: 17 FLETLGASSKVMNPASKQFVQDLIASE-KIVIF------SKSYCPYCKMAKDVFQKLKVT 69
L + S + + F+ + + + K + F Y + ++ KL +
Sbjct: 5 LLSSSTFSFEDVLEHFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLE 64
Query: 70 PKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTD---VKALYEKGELHPL 125
+ L +I++ L++ + ++GGG ++ L E G +
Sbjct: 65 VSELHLSK-PPLAAIENKLMK-----------ADIIYVGGGNTFNLLQELKETGLDDII 111
>gnl|CDD|217248 pfam02837, Glyco_hydro_2_N, Glycosyl hydrolases family 2, sugar
binding domain. This family contains
beta-galactosidase, beta-mannosidase and
beta-glucuronidase activities and has a jelly-roll fold.
Length = 160
Score = 30.3 bits (69), Expect = 0.16
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 71 KTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTD 112
+T + G + V L G S V+VNG+F+G
Sbjct: 67 RTFTVPADWKG---KRVFLRFEGVDSAAYVWVNGEFVGYHKG 105
>gnl|CDD|216433 pfam01323, DSBA, DSBA-like thioredoxin domain. This family
contains a diverse set of proteins with a
thioredoxin-like structure pfam00085. This family also
includes 2-hydroxychromene-2-carboxylate (HCCA)
isomerase enzymes catalyze one step in prokaryotic
polyaromatic hydrocarbon (PAH) catabolic pathways. This
family also contains members with functions other than
HCCA isomerisation, such as Kappa family GSTs, whose
similarity to HCCA isomerases was not previously
recognised. Some member sequences have been annotated
as a dioxygenases, dehydrogenases, and putative
glycerol-3-phosphate transfer proteins, but are most
likely HCCA isomerase enzymes.
Length = 191
Score = 30.5 bits (69), Expect = 0.16
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHR 78
+ F CP+C +AK+ +KL V++ +R
Sbjct: 2 VDEFFDFLCPFCYLAKERLEKLAARYGDVKVVYR 35
>gnl|CDD|181629 PRK09057, PRK09057, coproporphyrinogen III oxidase; Provisional.
Length = 380
Score = 30.6 bits (70), Expect = 0.17
Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 17/67 (25%)
Query: 48 FSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLL-EI--TGARSVPRVFVNG 104
F + CPYC V H D L E+ AR+ PR +
Sbjct: 13 FCLAKCPYCDFNSHV-------------RHAIDQARFAAAFLRELATEAARTGPRT-LTS 58
Query: 105 KFIGGGT 111
F GGGT
Sbjct: 59 IFFGGGT 65
>gnl|CDD|153223 cd03129, GAT1_Peptidase_E_like, Type 1 glutamine amidotransferase
(GATase1)-like domain found in peptidase E_like
proteins. Type 1 glutamine amidotransferase
(GATase1)-like domain found in peptidase E_like
proteins. This group contains proteins similar to the
aspartyl dipeptidases Salmonella typhimurium peptidase E
and Xenopus laevis peptidase E and, extracellular
cyanophycinases from Pseudomonas anguilliseptica BI
(CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria
peptidase E is believed to play a role in degrading
peptides generated by intracellular protein breakdown or
imported into the cell as nutrient sources. Peptidase E
uniquely hydrolyses only Asp-X dipeptides (where X is
any amino acid), and one tripeptide Asp-Gly-Gly.
Cyanophycinases are intracellular exopeptidases which
hydrolyze the polymer cyanophycin (multi
L-arginyl-poly-L-aspartic acid) to the dipeptide
beta-Asp-Arg. Peptidase E and cyanophycinases are
thought to have a Ser-His-Glu catalytic triad which
differs from the Cys-His-Glu catalytic triad typical of
GATase1 domains by having a Ser in place of the reactive
Cys at the nucleophile elbow. Xenopus peptidase E is
developmentally regulated in response to thyroid hormone
and, it is thought to play a role in apoptosis during
tail reabsorption.
Length = 210
Score = 30.3 bits (69), Expect = 0.20
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 11/88 (12%)
Query: 22 GASSKVMNPAS-KQFVQDLIASEKIVIF----SKSYCPYCKMAKDVFQKLKVTPKTVELD 76
G K + F+ + V+F S Y + + F++L V + L
Sbjct: 7 GGLDKAHARPILQDFLARAGGAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLI 66
Query: 77 HRDDGDSIQDVLLEITGARSVPRVFVNG 104
+ + LLE G +FV G
Sbjct: 67 DTANDPDVVARLLEADG------IFVGG 88
>gnl|CDD|239335 cd03037, GST_N_GRX2, GST_N family, Glutaredoxin 2 (GRX2) subfamily;
composed of bacterial proteins similar to E. coli GRX2,
an atypical GRX with a molecular mass of about 24kD,
compared with other GRXs which are 9-12kD in size. GRX2
adopts a GST fold containing an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain. It contains a redox active CXXC motif located in
the N-terminal domain but is not able to reduce
ribonucleotide reductase like other GRXs. However, it
catalyzes GSH-dependent protein disulfide reduction of
other substrates efficiently. GRX2 is thought to
function primarily in catalyzing the reversible
glutathionylation of proteins in cellular redox
regulation including stress responses.
Length = 71
Score = 28.5 bits (64), Expect = 0.28
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
K+ I+ +CP+C A+ + + + + L + D+ I+ + GA+ VP + +
Sbjct: 2 KLYIYE--HCPFCVKARMIAGLKNIPVEQIILQNDDEATPIR-----MIGAKQVPILEKD 54
Query: 104 -GKFIGGGTDV 113
G F+ D+
Sbjct: 55 DGSFMAESLDI 65
>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain.
Length = 105
Score = 28.9 bits (65), Expect = 0.34
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 44 KIVIFSKSYCPYC-KMAKDVFQKLKVTPKT 72
+V+F+ CPYC K+ K++ + V
Sbjct: 8 VLVVFTDPDCPYCKKLHKELLKDPDVQEYL 37
>gnl|CDD|239249 cd02951, SoxW, SoxW family; SoxW is a bacterial periplasmic TRX,
containing a redox active CXXC motif, encoded by a
genetic locus (sox operon) involved in thiosulfate
oxidation. Sulfur bacteria oxidize sulfur compounds to
provide reducing equivalents for carbon dioxide
fixation during autotrophic growth and the respiratory
electron transport chain. It is unclear what the role
of SoxW is, since it has been found to be dispensable
in the oxidation of thiosulfate to sulfate. SoxW is
specifically kept in the reduced state by SoxV, which
is essential in thiosulfate oxidation.
Length = 125
Score = 28.8 bits (65), Expect = 0.37
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 45 IVIFSKSYCPYC-KMAKDVFQKLKVTP 70
+++FS+ CPYC K+ +D V
Sbjct: 18 LLLFSQPGCPYCDKLKRDYLNDPAVQA 44
>gnl|CDD|239270 cd02972, DsbA_family, DsbA family; consists of DsbA and DsbA-like
proteins, including DsbC, DsbG, glutathione (GSH)
S-transferase kappa (GSTK),
2-hydroxychromene-2-carboxylate (HCCA) isomerase, an
oxidoreductase (FrnE) presumed to be involved in
frenolicin biosynthesis, a 27-kDa outer membrane
protein, and similar proteins. Members of this family
contain a redox active CXXC motif (except GSTK and HCCA
isomerase) imbedded in a TRX fold, and an alpha helical
insert of about 75 residues (shorter in DsbC and DsbG)
relative to TRX. DsbA is involved in the oxidative
protein folding pathway in prokaryotes, catalyzing
disulfide bond formation of proteins secreted into the
bacterial periplasm. DsbC and DsbG function as protein
disulfide isomerases and chaperones to correct
non-native disulfide bonds formed by DsbA and prevent
aggregation of incorrectly folded proteins.
Length = 98
Score = 28.5 bits (64), Expect = 0.40
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 45 IVIFSKSYCPYCKMA-KDVFQKLKVTPKTVELDHRD 79
IV F CPYC + ++ + L V + +R
Sbjct: 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRP 36
>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins
[Posttranslational modification, protein turnover,
chaperones / Energy production and conversion].
Length = 127
Score = 29.1 bits (64), Expect = 0.41
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 14 KTSFLETLGASSKVMNPASKQFVQDLIASEKIVI--FSKSYCPYCKMAKDVFQKL-KVTP 70
SFL A++ + K V+ F +CP C+ + ++L +
Sbjct: 3 LLSFLLGELATAASFEELDGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYG 62
Query: 71 KTVELDHRDDGDSIQDVLLEI-TGARSVP--RVFVNGKFI 107
VE+ + D D+ E RS+P +F +GK +
Sbjct: 63 GDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV 102
>gnl|CDD|183262 PRK11657, dsbG, disulfide isomerase/thiol-disulfide oxidase;
Provisional.
Length = 251
Score = 28.4 bits (64), Expect = 0.84
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 41 ASEKIVIFSKSYCPYCKM 58
A + +F+ CPYCK
Sbjct: 117 APRIVYVFADPNCPYCKQ 134
>gnl|CDD|233769 TIGR02187, GlrX_arch, Glutaredoxin-like domain protein. This
family of archaeal proteins contains a C-terminal domain
with homology to bacterial and eukaryotic glutaredoxins,
including a CPYC motif. There is an N-terminal domain
which has even more distant homology to glutaredoxins.
The name "glutaredoxin" may be inappropriate in the
sense of working in tandem with glutathione and
glutathione reductase which may not be present in the
archaea. The overall domain structure appears to be
related to bacterial alkylhydroperoxide reductases, but
the homology may be distant enough that the function of
this family is wholly different.
Length = 215
Score = 28.2 bits (63), Expect = 0.90
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
Query: 31 ASKQFVQDLIASEKIVIFSKSYCPYC----KMAKDV-FQKLKVTPKTVELDHRDDGDSIQ 85
+ + +Q L +I +F CPYC MA K+ + +E + D
Sbjct: 123 KTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD----- 177
Query: 86 DVLLEITGARSVPRVFVNG---KFIG 108
L E G SVP++ +N +F+G
Sbjct: 178 --LAEKYGVMSVPKIVINKGVEEFVG 201
Score = 25.5 bits (56), Expect = 8.9
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 9/53 (16%)
Query: 28 MNPASKQFVQDLIASE-----KIVIFS---KSYCPYCKMAKDVFQKL-KVTPK 71
++ ++ +++L E +IV+F+ K C YCK + + ++L +V+PK
Sbjct: 1 LSEEDREILKELFLKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK 53
>gnl|CDD|218589 pfam05431, Toxin_10, Insecticidal Crystal Toxin, P42. Family of
Bacillus insecticidal crystal toxins. Strains of
Bacillus that have this insecticidal activity use a
binary toxin comprised of two proteins, P51 and P42
(this family). Members of this family are highly
conserved between strains of different serotypes and
phage groups.
Length = 199
Score = 28.2 bits (63), Expect = 1.1
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 65 KLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVK 114
L+ P+ +D D G S Q + G+ +P + VN I T +K
Sbjct: 8 TLEDYPELSNID--DTGTSPQQAPRALMGSTLIPCIMVNDPVISLNTRIK 55
>gnl|CDD|131249 TIGR02194, GlrX_NrdH, Glutaredoxin-like protein NrdH. NrdH-redoxin
is a representative of a class of small redox proteins
that contain a conserved CXXC motif and are
characterized by a glutaredoxin-like amino acid sequence
and thioredoxin-like activity profile. Unlike other the
glutaredoxins to which it is most closely related, NrdH
aparrently does not interact with
glutathione/glutathione reductase, but rather with
thioredoxin reductase to catalyze the reduction of
ribonucleotide reductase.
Length = 72
Score = 26.6 bits (59), Expect = 1.5
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNG 104
I ++SK+ C CKM K ++ + + + +D + ++I D + G R VP + +G
Sbjct: 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINID--EQPEAI-DYVKAQ-GFRQVPVIVADG 56
>gnl|CDD|224442 COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs
[DNA replication, recombination, and repair].
Length = 192
Score = 27.5 bits (61), Expect = 1.6
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 54 PYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIG 108
P + A++ + L + +TVE D D D R + V V+G +
Sbjct: 88 PCGEEAREFLRNLLLGRRTVECDLADRKDRYG---------RLLAYVTVDGTDVN 133
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 27.7 bits (62), Expect = 2.0
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 80 DGDSIQDVLLEITGARSVPRVFVNGKFIGGG-TDVKALYEK 119
DG QD + E G + VP VF+NG+ G D+ L EK
Sbjct: 155 DGALFQDEV-EALGIQGVPAVFLNGEEFHNGRMDLAELLEK 194
>gnl|CDD|179607 PRK03609, umuC, DNA polymerase V subunit UmuC; Reviewed.
Length = 422
Score = 27.4 bits (61), Expect = 2.0
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 36 VQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGAR 95
+DL +V FS +Y Y M+ V L+ EL R + SI + ++TG R
Sbjct: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLE------ELSPRVEIYSIDEAFCDLTGVR 111
Query: 96 S 96
+
Sbjct: 112 N 112
>gnl|CDD|177519 PHA03075, PHA03075, glutaredoxin-like protein; Provisional.
Length = 123
Score = 26.6 bits (59), Expect = 2.4
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKLK 67
+++F K C C+ + ++L+
Sbjct: 5 LILFGKPLCSVCESISEALKELE 27
>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like. Thioredoxins are
small enzymes that participate in redox reactions, via
the reversible oxidation of an active centre disulfide
bond.
Length = 81
Score = 26.1 bits (58), Expect = 2.5
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 34 QFVQDLIASEK--IVIFSKSYCPYCK-MAKDVFQ 64
+ + K +V F +CP C+ + +D
Sbjct: 8 EALAKAREEGKPLLVDFGADWCPTCQALDRDFLS 41
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain;
associated with DEXDc-, DEAD-, and DEAH-box proteins,
yeast initiation factor 4A, Ski2p, and Hepatitis C
virus NS3 helicases; this domain is found in a wide
variety of helicases and helicase related proteins; may
not be an autonomously folding unit, but an integral
part of the helicase; 4 helicase superfamilies at
present according to the organization of their
signature motifs; all helicases share the ability to
unwind nucleic acid duplexes with a distinct
directional polarity; they utilize the free energy from
nucleoside triphosphate hydrolysis to fuel their
translocation along DNA, unwinding the duplex in the
process.
Length = 131
Score = 26.8 bits (60), Expect = 2.5
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 34 QFVQDLIAS-EKIVIFSKSYCPYCKMAKDVFQKLK 67
+ +++ + K++IF CP KM ++ + L+
Sbjct: 19 ELLKEHLKKGGKVLIF----CPSKKMLDELAELLR 49
>gnl|CDD|239273 cd02975, PfPDO_like_N, Pyrococcus furiosus protein disulfide
oxidoreductase (PfPDO)-like family, N-terminal TRX-fold
subdomain; composed of proteins with similarity to
PfPDO, a redox active thermostable protein believed to
be the archaeal counterpart of bacterial DsbA and
eukaryotic protein disulfide isomerase (PDI), which are
both involved in oxidative protein folding. PfPDO
contains two redox active CXXC motifs in two contiguous
TRX-fold subdomains. The active site in the N-terminal
TRX-fold subdomain is required for isomerase but not
for reductase activity of PfPDO. The exclusive presence
of PfPDO-like proteins in extremophiles may suggest
that they have a special role in adaptation to extreme
conditions.
Length = 113
Score = 26.6 bits (59), Expect = 2.8
Identities = 11/51 (21%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 28 MNPASKQFVQDLIASE-----KIVIF-SKSYCPYCKMAKDVFQKL-KVTPK 71
++ ++ +++ E +V+F SK C YC++ K + ++L +++ K
Sbjct: 3 LSDEDRKALKEEFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDK 53
>gnl|CDD|236291 PRK08565, PRK08565, DNA-directed RNA polymerase subunit B;
Provisional.
Length = 1103
Score = 27.2 bits (61), Expect = 3.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 99 RVFVNGKFIGGGTDVKALYEK-------GELHPLV 126
RV++NG+ IG D + L EK G++ V
Sbjct: 502 RVYLNGRLIGYHPDGEELAEKIRELRRSGKISDEV 536
>gnl|CDD|239324 cd03026, AhpF_NTD_C, TRX-GRX-like family, Alkyl hydroperoxide
reductase F subunit (AhpF) N-terminal domain (NTD)
subfamily, C-terminal TRX-fold subdomain; AhpF is a
homodimeric flavoenzyme which catalyzes the
NADH-dependent reduction of the peroxiredoxin AhpC,
which then reduces hydrogen peroxide and organic
hydroperoxides. AhpF contains an NTD containing two
contiguous TRX-fold subdomains similar to Pyrococcus
furiosus protein disulfide oxidoreductase (PfPDO). It
also contains a catalytic core similar to TRX reductase
containing FAD and NADH binding domains with an active
site disulfide. The proposed mechanism of action of AhpF
is similar to a TRX/TRX reductase system. The flow of
reducing equivalents goes from NADH -> catalytic core of
AhpF -> NTD of AhpF -> AhpC -> peroxide substrates. The
catalytic CXXC motif of the NTD of AhpF is contained in
its C-terminal TRX subdomain.
Length = 89
Score = 25.7 bits (57), Expect = 3.3
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 80 DGDSIQDVLLEITGARSVPRVFVNGKFIGGG 110
DG QD +E G SVP +F+NG+ G G
Sbjct: 50 DGALFQD-EVEERGIMSVPAIFLNGELFGFG 79
>gnl|CDD|233767 TIGR02182, GRXB, Glutaredoxin, GrxB family. Glutaredoxins are
thioltransferases (disulfide reductases) which utilize
glutathione and NADPH as cofactors. Oxidized glutathione
is regenerated by glutathione reductase. Together these
components compose the glutathione system. Glutaredoxins
utilize the CXXC motif common to thioredoxins and are
involved in multiple cellular processes including
protection from redox stress, reduction of critical
enzymes such as ribonucleotide reductase and the
generation of reduced sulfur for iron sulfur cluster
formation. Glutaredoxins are capable of reduction of
mixed disulfides of glutathione as well as the formation
of glutathione mixed disulfides. This model includes the
highly abundant E. coli GrxB (Grx2) glutaredoxin which
is notably longer than either GrxA or GrxC. Unlike the
other two E. coli glutaredoxins, GrxB appears to be
unable to reduce ribonucleotide reductase , and may have
more to do with resistance to redox stress [Energy
metabolism, Electron transport].
Length = 209
Score = 26.7 bits (59), Expect = 3.4
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 52 YCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN-GKFIGGG 110
+CP+C A+ +F + + L + D+ I+ + GA+ VP + + G+ +
Sbjct: 7 HCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMI-----GAKQVPILQKDDGRAMPES 61
Query: 111 TDVKALYEKGELHPLVQ 127
D+ A ++K + PL+
Sbjct: 62 LDIVAYFDKLDGEPLLT 78
>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily;
composed of eukaryotic proteins similar to
Saccharomyces cerevisiae MPD1 protein, which contains a
single redox active TRX domain located at the
N-terminus, and an ER retention signal at the
C-terminus indicative of an ER-resident protein. MPD1
has been shown to suppress the maturation defect of
carboxypeptidase Y caused by deletion of the yeast PDI1
gene. Other characterized members of this subfamily
include the Aspergillus niger prpA protein and Giardia
PDI-1. PrpA is non-essential to strain viability,
however, its transcript level is induced by
heterologous protein expression suggesting a possible
role in oxidative protein folding during high protein
production. Giardia PDI-1 has the ability to refold
scrambled RNase and exhibits transglutaminase activity.
Length = 109
Score = 26.2 bits (58), Expect = 3.7
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 26 KVMNPASKQFVQDLIASEK--IVIFSKSYCPYCKMAKDVFQKL 66
V K F + + + +V F +C +CK K + K
Sbjct: 1 PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKA 43
>gnl|CDD|225054 COG2143, COG2143, Thioredoxin-related protein [Posttranslational
modification, protein turnover, chaperones].
Length = 182
Score = 26.4 bits (58), Expect = 3.9
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 45 IVIFSKSYCPYC-KMAKDVFQK 65
+++F + C YC + KD+
Sbjct: 46 LLMFESNGCSYCERFKKDLKNV 67
>gnl|CDD|222147 pfam13462, Thioredoxin_4, Thioredoxin.
Length = 170
Score = 26.2 bits (58), Expect = 4.1
Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 10/50 (20%)
Query: 41 ASEKIVIFSKSYCPYCK-MAKDVFQ---------KLKVTPKTVELDHRDD 80
A ++ ++ CP+C ++V + K++ + D
Sbjct: 13 APVTVIEYADFTCPHCARFHEEVKKLLAKYIDTGKVRFIYRDFPFDKEGP 62
>gnl|CDD|237484 PRK13728, PRK13728, conjugal transfer protein TrbB; Provisional.
Length = 181
Score = 25.8 bits (57), Expect = 5.5
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 44 KIVIFSKSYCPYC 56
K+V+F + +CPYC
Sbjct: 72 KVVLFMQGHCPYC 84
>gnl|CDD|235972 PRK07225, PRK07225, DNA-directed RNA polymerase subunit B';
Validated.
Length = 605
Score = 26.1 bits (58), Expect = 5.7
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 7/35 (20%)
Query: 99 RVFVNGKFIGGGTDVKALYE-------KGELHPLV 126
+V+VNGK IG D + L E GE+ V
Sbjct: 6 KVYVNGKLIGTHDDPEELVEEIREARRSGEISEEV 40
>gnl|CDD|235475 PRK05452, PRK05452, anaerobic nitric oxide reductase
flavorubredoxin; Provisional.
Length = 479
Score = 26.3 bits (58), Expect = 5.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 53 CPYCKMAKDVFQKLKVTPK 71
CP C + KDVF +L K
Sbjct: 461 CPECSLGKDVFDELASEAK 479
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 26.3 bits (59), Expect = 5.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 96 SVPRVFVNGKFIGGG 110
+VP VF+NG+ G G
Sbjct: 169 AVPTVFLNGEEFGQG 183
>gnl|CDD|225545 COG2999, GrxB, Glutaredoxin 2 [Posttranslational modification,
protein turnover, chaperones].
Length = 215
Score = 25.9 bits (57), Expect = 6.4
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 52 YCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVP 98
+CP+C A+ +F + + L + D+ I+ + G + VP
Sbjct: 8 HCPFCVRARMIFGLKNIPVELHVLLNDDEETPIR-----MIGQKQVP 49
>gnl|CDD|219195 pfam06832, BiPBP_C, Penicillin-Binding Protein C-terminus Family.
This conserved region of approximately 90 residues is
found in a sub-group of bacterial Penicillin-Binding
Proteins (PBPs). A variable length loop region separates
this region from the transpeptidase unit (pfam00905). It
is predicted by PROF to be an all beta fold.
Length = 90
Score = 25.0 bits (55), Expect = 6.4
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 80 DGDSIQDVLLEITGARSVPRVFVNGKFIGGGTD 112
D + Q ++L+ G F++GK +G
Sbjct: 28 DIPARQRLVLKAAGGEGPLYWFLDGKPLGETKR 60
>gnl|CDD|236404 PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase;
Validated.
Length = 1165
Score = 25.9 bits (58), Expect = 6.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 70 PKTVELDHRDDGDSIQDVLLEITG 93
V + HRD+ D++Q L EI G
Sbjct: 585 APGVTVHHRDELDAVQRELREIPG 608
>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin. Thioredoxins are small
enzymes that participate in redox reactions, via the
reversible oxidation of an active centre disulfide
bond. Some members with only the active site are not
separated from the noise.
Length = 104
Score = 25.3 bits (56), Expect = 7.2
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 35 FVQDLIASEKIVI--FSKSYCPYCKMAKDVFQKL 66
F +++ S+K V+ F +C CK ++KL
Sbjct: 10 FDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKL 43
>gnl|CDD|131785 TIGR02738, TrbB, type-F conjugative transfer system pilin
assembly thiol-disulfide isomerase TrbB. This protein
is part of a large group of proteins involved in
conjugative transfer of plasmid DNA, specifically the
F-type system. This protein has been predicted to
contain a thioredoxin fold, contains a conserved pair
of cysteines and has been shown to function as a thiol
disulfide isomerase by complementation of an Ecoli DsbA
defect. The protein is believed to be involved in pilin
assembly. The protein is closely related to TraF
(TIGR02739) which is somewhat longer, lacks the
cysteine motif and is apparently not functional as a
disulfide bond isomerase.
Length = 153
Score = 25.5 bits (56), Expect = 7.3
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 32 SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKL 66
+ Q +V F +S CPYC V ++
Sbjct: 41 APQGRHANQDDYALVFFYQSTCPYCHQFAPVLKRF 75
>gnl|CDD|99727 cd06406, PB1_P67, A PB1 domain is present in p67 proteins which
forms a signaling complex with p40, a crucial step for
activation of NADPH oxidase during phagocytosis. PB1
domain is a modular domain mediating specific
protein-protein interactions which play a role in many
critical cell processes . A canonical PB1-PB1
interaction, which involves heterodimerization of two
PB1 domains, is required for the formation of
macromolecular signaling complexes ensuring specificity
and fidelity during cellular signaling. The interaction
between two PB1 domain depends on the type of PB1.
There are three types of PB1 domains: type I which
contains an OPCA motif, acidic aminoacid cluster, type
II which contains a basic cluster, and type I/II which
contains both an OPCA motif and a basic cluster.
Interactions of PB1 domains with other protein domains
have been described as noncanonical PB1-interactions.
The PB1 domain module is conserved in amoebas, fungi,
animals, and plants. The p67 proteins contain a type II
PB1 domain.
Length = 80
Score = 24.7 bits (54), Expect = 8.6
Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 54 PYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEIT 92
Y + + + KL++ + + L ++ + S +DV+L T
Sbjct: 22 SYATLLQKISSKLELPAEHITLSYKSE-ASGEDVILSDT 59
>gnl|CDD|218901 pfam06110, DUF953, Eukaryotic protein of unknown function
(DUF953). This family consists of several hypothetical
eukaryotic proteins of unknown function.
Length = 119
Score = 25.1 bits (55), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 50 KSYCPYCKMAKDVFQK-LKVTPKTVELDHRDDGD 82
+S+CP C A+ V ++ LK P+ + D GD
Sbjct: 35 ESWCPDCVRAEPVIREALKHAPEDCHFIYVDVGD 68
>gnl|CDD|223202 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 25.6 bits (57), Expect = 9.4
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 34 QFVQ---DLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSI 84
QF Q ++I S+ ++ +A ++ + L + T+E++ R +
Sbjct: 123 QFYQFGVEVIGSDSPDADAEV----IALAVEILEALGIGGFTLEINSRGILEGR 172
>gnl|CDD|205373 pfam13192, Thioredoxin_3, Thioredoxin domain.
Length = 76
Score = 24.4 bits (54), Expect = 9.5
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPK-TVELDHRDDGDSIQDVLLEITGARSVPRVFV 102
+I + C C ++ ++ E++ D I G S P + +
Sbjct: 2 EIKVLGPG-CAKCPKLEEAVKEAVAELGIDAEVEKVTDFPEIAK-----YGVMSTPALVI 55
Query: 103 NGKFI 107
NGK +
Sbjct: 56 NGKVV 60
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.395
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,356,324
Number of extensions: 550233
Number of successful extensions: 701
Number of sequences better than 10.0: 1
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 96
Length of query: 127
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 42
Effective length of database: 7,167,512
Effective search space: 301035504
Effective search space used: 301035504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)