RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1889
(127 letters)
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics,
structural genomics CON SGC, developmental protein,
differentiation; 2.21A {Homo sapiens}
Length = 114
Score = 151 bits (383), Expect = 5e-49
Identities = 39/100 (39%), Positives = 56/100 (56%)
Query: 28 MNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDV 87
++ + LI ++VIFSKSYCP+ K++F L V +ELD DDG +Q+V
Sbjct: 2 AREELRRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEV 61
Query: 88 LLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
L EIT ++VP +FVN +GG Y+ G L L+Q
Sbjct: 62 LSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 101
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB:
2fls_A*
Length = 146
Score = 152 bits (385), Expect = 7e-49
Identities = 48/105 (45%), Positives = 68/105 (64%)
Query: 23 ASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGD 82
+S + + A +Q+ I+ +VIFSK+ C YC MAK +F + V K VELD + G+
Sbjct: 29 SSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGN 88
Query: 83 SIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
QD L ++TG R+VPR+FVNG FIGG TD L+++G+L PLV
Sbjct: 89 QFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 133
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 151 bits (384), Expect = 8e-49
Identities = 48/105 (45%), Positives = 67/105 (63%)
Query: 23 ASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGD 82
S + + A +Q+ I+ +VIFSK+ C YC MAK +F + V K VELD + G+
Sbjct: 7 GSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGN 66
Query: 83 SIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
QD L ++TG R+VPR+FVNG FIGG TD L+++G+L PLV
Sbjct: 67 QFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 111
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron
transport, redox-active center, transport; HET: MES;
2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Length = 118
Score = 146 bits (371), Expect = 4e-47
Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 4/109 (3%)
Query: 23 ASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDV-FQKLKVTPKTV---ELDHR 78
+++ + + V+DLIA +I + SK+YCPYC A + F+KLKV V +L+
Sbjct: 5 HHHHMVSQETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDM 64
Query: 79 DDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+G IQ L EI G R+VP +++NGK IGG D++ L E GEL L++
Sbjct: 65 KEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLE 113
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 145 bits (367), Expect = 2e-46
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 24 SSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDS 83
S + ++ A + ++L +S +V+FSK+YC YC K + ++ + K VELD DG
Sbjct: 2 SKQELDAA-LKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQ 60
Query: 84 IQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+Q L TG +VP VF+ GK IGG V +++ EL PL+Q
Sbjct: 61 LQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQ 104
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite.,
electron trans oxidoreductase; 1.80A {Ectromelia virus}
PDB: 2hzf_A 2hze_B
Length = 114
Score = 144 bits (366), Expect = 2e-46
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 29 NPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTP---KTVELDHRDDGDSIQ 85
+ +++FVQ +A+ K+ IF K CP+C+ A D+ K + V++ + ++
Sbjct: 5 HQMAEEFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELR 64
Query: 86 DVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
D +ITG ++VPR+F IGG +D+ + L ++
Sbjct: 65 DYFEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILS 106
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion,
redox-activ transit peptide, transport, oxidoreductase;
1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A
3d5j_A*
Length = 129
Score = 144 bits (366), Expect = 3e-46
Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 19 ETLGASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDV-FQKLKVT---PKTVE 74
+ S +++ + V+DLI +++ + +K+YCPYCK FQ+L V +E
Sbjct: 13 GLVPRGSHMVSQETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLE 72
Query: 75 LDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
LD +G IQD L EI+G ++VP V++NGK IGG +D++ L + G+L +++
Sbjct: 73 LDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 125
>1kte_A Thioltransferase; redox-active center, electron transport,
acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB:
1jhb_A 1b4q_A*
Length = 105
Score = 143 bits (363), Expect = 6e-46
Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
Query: 32 SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKT---VELDHRDDGDSIQDVL 88
++ FV I K+V+F K CP+C+ +++ +L V++ D + IQD L
Sbjct: 1 AQAFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYL 60
Query: 89 LEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
++TGAR+VPRVF+ + IGG TD+++++++GEL +Q
Sbjct: 61 QQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQ 99
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold,
thiol-disulfide oxidoreductase, glutaredox
oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana}
PDB: 3rhc_A* 3fz9_A* 3fza_A*
Length = 113
Score = 142 bits (360), Expect = 2e-45
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 28 MNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQD 86
++ ++ + +VI+SK++C YC K +F++L V P VELD G +Q
Sbjct: 4 FGSRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQK 63
Query: 87 VLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
VL +TG +VP VFV GK IGG TD L KG+L ++
Sbjct: 64 VLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLA 104
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6,
oxidoreductase; HET: GSH; 1.50A {Saccharomyces
cerevisiae}
Length = 127
Score = 134 bits (338), Expect = 6e-42
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 33 KQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQK---LKVTPKTVELDHRDDGDSIQDVLL 89
++ ++ I+IFSKS C Y K K++ + +ELD G+ +Q+ +
Sbjct: 4 QKEYSLILDLSPIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIK 63
Query: 90 EITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+TG +VP + VNG GG ++K L+ +G+L +Q
Sbjct: 64 LVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQ 101
>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron
transport, redox- active center, yeast, GRX1P,
transport; HET: PIA; 2.7A {Aequorea victoria}
Length = 362
Score = 119 bits (300), Expect = 8e-34
Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 25 SKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDV-FQKLKVTPKT---VELDHRDD 80
S +++ + + V+DLIA +I + SK+YCPY A + F+KLKV ++L+ +
Sbjct: 243 SGMVSQETIKHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKE 302
Query: 81 GDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
G IQ L EI G R+VP +++NGK IGG D++ L E GEL L++
Sbjct: 303 GADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLE 349
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A
{Synechocystis SP}
Length = 99
Score = 102 bits (257), Expect = 5e-30
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 28 MNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDV 87
M + S KI I++ S CP+C A + ++ V + +D D ++ + +
Sbjct: 1 MRGSHHHHHHGSAVSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDG--DNEAREAM 58
Query: 88 LLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
G RS+P++F++ + IGG D+ AL G+L PL+
Sbjct: 59 AARANGKRSLPQIFIDDQHIGGCDDIYALDGAGKLDPLLH 98
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Brucella melitensis}
Length = 92
Score = 97.6 bits (244), Expect = 5e-28
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
++I+++ CPYC AK + + ++ ++ + E +G + P++F+
Sbjct: 7 DVIIYTRPGCPYCARAKALLARKGAEFNEIDAS---ATPELRAEMQERSGRNTFPQIFIG 63
Query: 104 GKFIGGGTDVKALYEKGELHPLVQ 127
+GG D+ AL ++G+L L++
Sbjct: 64 SVHVGGCDDLYALEDEGKLDSLLK 87
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Bartonella henselae}
Length = 89
Score = 97.2 bits (243), Expect = 6e-28
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
+I+++++ CPYCK A+D+ K V ++ Q+++ G + P++F+
Sbjct: 7 EIILYTRPNCPYCKRARDLLDKKGVKYTDIDAS----TSLRQEMVQRANGRNTFPQIFIG 62
Query: 104 GKFIGGGTDVKALYEKGELHPLVQ 127
+GG D+ AL KG+L L+Q
Sbjct: 63 DYHVGGCDDLYALENKGKLDSLLQ 86
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron
transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB:
3grx_A*
Length = 82
Score = 93.7 bits (234), Expect = 1e-26
Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
+ I++K CPYC AK + V+ + + +D + ++ +++ +G +VP++F++
Sbjct: 2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPID---GNAAKREEMIKRSGRTTVPQIFID 58
Query: 104 GKFIGGGTDVKALYEKGELHPLVQ 127
+ IGG D+ AL +G L PL++
Sbjct: 59 AQHIGGYDDLYALDARGGLDPLLK 82
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 99.7 bits (249), Expect = 9e-26
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 28 MNPAS--KQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQ 85
M PA Q+++ + S +++FSK+ CPYCK KDV + K+ T+ELD +G +IQ
Sbjct: 1 MPPADGTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQ 60
Query: 86 DVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
L + +VP++FV GKFIG V Y EL +V
Sbjct: 61 KCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVN 102
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP:
c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Length = 85
Score = 81.1 bits (201), Expect = 1e-21
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTV---ELDHRDDGDSIQDVLLEITG--ARSVP 98
+ VIF +S CPYC AKD+ +KL +D R +G + +D L + G +VP
Sbjct: 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKED-LQQKAGKPVETVP 60
Query: 99 RVFVNGKFIGGGTDVKALYEKGEL 122
++FV+ + IGG TD A K L
Sbjct: 61 QIFVDQQHIGGYTDFAAW-VKENL 83
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics
of infec diseases, csgid, oxidoreductase; HET: GSH;
2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Length = 89
Score = 72.3 bits (178), Expect = 4e-18
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQD----VLLEITGARSVPR 99
K+ I++++ CPYC AK F++ + +D D I +VP+
Sbjct: 5 KVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQ 64
Query: 100 VFVNGKFIGGGTDVKALYEK 119
+F++ + IGG T++KA +K
Sbjct: 65 IFIDDEHIGGFTELKANADK 84
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein
structure initiative, midwest center for structural
genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Length = 92
Score = 68.8 bits (169), Expect = 9e-17
Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDS--IQDVLLEITGARSVPRVF 101
+++++ S CP+CK + ++ V + + +D + + + + + I+G+ SVP V
Sbjct: 13 EVLMYGLSTCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVV 72
Query: 102 VNGKFIGGGTDVKALYEKGELHPLVQ 127
K + G Y + +L L++
Sbjct: 73 KGDKHVLG-------YNEEKLKELIR 91
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 69.4 bits (170), Expect = 9e-17
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELD--HRDDGDSIQDVLLEITGARSVPRVF 101
K++++ S C +CK K + L V V +D + + + + + S P
Sbjct: 23 KVIMYGLSTCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTI 82
Query: 102 VNGKFIGGGTDVKALYEK 119
+N + G K + E
Sbjct: 83 INDEKAIVGFKEKEIRES 100
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 55.8 bits (135), Expect = 1e-11
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
+I I++++ C C K + + + +D ++ + + G R +P V
Sbjct: 2 RITIYTRNDCVQCHATKRAMENRGFDFEMINVD--RVPEAAEAL--RAQGFRQLPVVIAG 57
Query: 104 GKFIGG 109
G
Sbjct: 58 DLSWSG 63
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 53.8 bits (130), Expect = 5e-11
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
I +++K C C K + + TV++ D ++ + G P V V+
Sbjct: 2 SITLYTKPACVQCTATKKALDRAGLAYNTVDIS--LDDEARD--YVMALGYVQAPVVEVD 57
Query: 104 GKFIGG 109
G+ G
Sbjct: 58 GEHWSG 63
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1
c.47.1.10
Length = 241
Score = 54.7 bits (132), Expect = 3e-10
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 33 KQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEIT 92
K E I IF+K CP+C AK + ++ + + L H D+ + ++
Sbjct: 160 KYLAPQHQVQESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGH----DATIVSVRAVS 215
Query: 93 GARSVPRVFVNGKFIGGGTDVKA 115
G +VP+VF+ GK IGG D++
Sbjct: 216 GRTTVPQVFIGGKHIGGSDDLEK 238
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria
phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Length = 87
Score = 50.9 bits (122), Expect = 7e-10
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 49 SKSYCPYCKMAKDVFQKLKV--TPKTVELDHRDDGDSIQDVLLE-----ITGARSVPRVF 101
+ C C AK + K + + D LL ++P+VF
Sbjct: 10 NIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVF 69
Query: 102 V-NGKFIGGGTDVKALYE 118
+G IGG ++ ++
Sbjct: 70 APDGSHIGGFDQLREYFK 87
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK;
glutaredoxin, thioredoxin fold, protein 3D-structure,
X-RAY crystallography; 1.60A {Mus musculus} SCOP:
c.47.1.14 PDB: 1j0f_A 1sj6_A
Length = 93
Score = 50.9 bits (122), Expect = 1e-09
Identities = 9/92 (9%), Positives = 30/92 (32%), Gaps = 11/92 (11%)
Query: 44 KIVIFSKSYC------PYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG--AR 95
+ ++S S + ++ + V++ + ++D + + G
Sbjct: 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNA---LRDEMRTLAGNPKA 59
Query: 96 SVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+ P++ + G E+ L ++
Sbjct: 60 TPPQIVNGNHYCGDYELFVEAVEQDTLQEFLK 91
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 43.6 bits (102), Expect = 1e-06
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 29 NPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVL 88
+P + L ++ +CP+C+ K++F VE + + Q
Sbjct: 1 SPLAVGLAAHL-RQIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECS-PNGPGTPQAQE 58
Query: 89 LEITGARSVPRVFVNGKFIGGGTDVKALYE 118
G S P +NG+ G ++AL
Sbjct: 59 CTEAGITSYPTWIINGRTYTGVRSLEALAV 88
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL
redox-active center, transit peptide, transport,
oxidoreduc; 2.40A {Arabidopsis thaliana}
Length = 109
Score = 42.2 bits (100), Expect = 3e-06
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 28 MNPASKQFVQDLIASEKIVIFSK--SYCPYC---KMAKDVFQKLKVTPKTVELDHRDDGD 82
+ P K ++ L+ SEK+V+F K P C + + L V + V + ++ +
Sbjct: 3 LTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDV--NILEN-E 59
Query: 83 SIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
++ L E + + P++++ G+F GG ++ GEL V+
Sbjct: 60 MLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVE 104
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Length = 105
Score = 41.4 bits (98), Expect = 4e-06
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 28 MNPASKQFVQDLIASEKIVIFSK--SYCPYCKMAKDVFQKLKVTPKTVELDHRD--DGDS 83
M P ++ ++ L +++F K C +K + + L T VE + D + +
Sbjct: 2 MAPKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNST--GVEYETFDILEDEE 59
Query: 84 IQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
++ L + + P+++V G+ +GG VK L E GEL P+++
Sbjct: 60 VRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILR 103
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Length = 111
Score = 39.5 bits (93), Expect = 2e-05
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 28 MNPASKQFVQDLIASEKIVIFSK--SYCPYC---KMAKDVFQKLKVTPKTVELDHRDDGD 82
M ++ L + ++F K P C K ++ K + + D D +
Sbjct: 1 MKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSF--DIFSD-E 57
Query: 83 SIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
++ L + + P+++V+G+ IGG +K L EL +
Sbjct: 58 EVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICP 102
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron
transport, mitochondrion, redox-active center, transit
peptide, transport; 1.67A {Saccharomyces cerevisiae}
Length = 121
Score = 39.7 bits (93), Expect = 3e-05
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 28 MNPASKQFVQDLIASEKIVIFSK--SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQ 85
++ ++ ++D I S +V+F K P C ++ L + D
Sbjct: 1 LSTEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLG--------NQGVDPAKFA 52
Query: 86 DV-LLEITGARS----------VPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+LE R +P+++VN +FIGG + ++ GEL L++
Sbjct: 53 AYNVLEDPELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLE 105
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Length = 100
Score = 38.9 bits (91), Expect = 3e-05
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
+ +F+K+ CP C AK+V Q K E+D + E +P +N
Sbjct: 18 VLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPEN---STWYERYKFD-IPVFHLN 73
Query: 104 GKFIGGGT-DVKALYEK 119
G+F+ + L ++
Sbjct: 74 GQFLMMHRVNTSKLEKQ 90
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 40.0 bits (93), Expect = 4e-05
Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 17/115 (14%)
Query: 24 SSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELD--HRDDG 81
S + A + +Q + ++++ + +CP C++ + +EL +
Sbjct: 37 ESNGLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRA 96
Query: 82 DSIQDVLLEITGARSVPRVFV---NGKFIG-----------GGTDVKALYEKGEL 122
+ L + ++P V V +G GG A Y+ G+
Sbjct: 97 EDDLRQRLAL-ERIAIPLVLVLDEEFNLLGRFVERPQAVLDGGPQALAAYKAGDY 150
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: c.47.1.1
Length = 109
Score = 38.4 bits (90), Expect = 7e-05
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 33 KQFVQDLIASEKIVIFSK--SYCPYC---KMAKDVFQKLKVTPKTVELDHRDDGDSIQDV 87
++ L +++F K C K ++ V +T D +D + ++
Sbjct: 5 SSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETF--DILED-EEVRQG 61
Query: 88 LLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
L + + P+++V G +GG VK L + GEL P+++
Sbjct: 62 LKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILK 101
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 37.7 bits (88), Expect = 8e-05
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 21/76 (27%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEIT---------GA 94
I +F+ CPYC MA +V + K ++ GD I ++I G
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAK----------KEFGDKIDVEKIDIMVDREKAIEYGL 53
Query: 95 RSVPRVFVNGK--FIG 108
+VP + +NG F+G
Sbjct: 54 MAVPAIAINGVVRFVG 69
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame
87, Fe/S cluster, oxidoreductase, thioredoxin family,
GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens}
PDB: 2wul_A*
Length = 118
Score = 38.1 bits (89), Expect = 9e-05
Identities = 19/103 (18%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 31 ASKQFVQDLIASEKIVIFSKSY-----CPYCKMAKDVFQKLKVTP-KTVELDHRDDGDSI 84
S + + L+ +K+V+F K C + + + V + DD +
Sbjct: 8 GSAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAY--NVLDD-PEL 64
Query: 85 QDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
+ + + + ++P+V++NG+F+GG + +++ G+L ++
Sbjct: 65 RQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELK 107
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster
scaffolder, Fe2S2, homodimer, transport, glutathione,
thioredoxin fold; HET: GSH; 1.90A {Escherichia coli}
PDB: 1yka_A
Length = 135
Score = 38.6 bits (90), Expect = 1e-04
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 23 ASSKVMNPASKQFVQDLIASEKIVIFSK--SYCPYCKMAKDVFQKLKVTPKTVELDHRD- 79
M+ + +Q IA I+++ K P C + Q L + D
Sbjct: 16 PRGSHMSTT-IEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAAC--GERFAYVDI 72
Query: 80 -DGDSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
I+ L + + P+++V+G+ +GG V +Y++GEL L++
Sbjct: 73 LQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIK 121
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2;
SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 111
Score = 37.6 bits (87), Expect = 2e-04
Identities = 10/92 (10%), Positives = 26/92 (28%), Gaps = 11/92 (11%)
Query: 45 IVIFSKSYC------PYCKMAKDVFQKLKVTPKTVELDHRDDG-----DSIQDVLLEITG 93
I +F S + + K+ + V++ ++ ++ G
Sbjct: 10 IRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQG 69
Query: 94 ARSVPRVFVNGKFIGGGTDVKALYEKGELHPL 125
P++F ++ G E +
Sbjct: 70 NPLPPQIFNGDRYCGDYDSFFESKESNTVFSF 101
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 37.5 bits (86), Expect = 4e-04
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 17 FLETLGASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKV-----TPK 71
+ L + A+K+ ++ L I CPYC A +
Sbjct: 114 VIMRLSEDESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNP 173
Query: 72 TVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGG 110
+ + + ++ + G SVP + +NG + G
Sbjct: 174 VILSEAVEAYENPDIA--DKYGVMSVPSIAINGYLVFVG 210
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 36.5 bits (84), Expect = 4e-04
Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 12/111 (10%)
Query: 19 ETLGASSKVMNPASKQFVQDLIASEK--IVIFSKSYCPYCKMA----KDVFQKLKVTPKT 72
E + K + + Q+ + ++ + CPYC+ V + K
Sbjct: 5 EQFLDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYF 64
Query: 73 VELDHRDDGDSIQDVLLEITGARSVPRVFV--NGK---FIGGGTDVKALYE 118
+ + + +Q G +VP +G+ + + +
Sbjct: 65 INSEEPSQLNDLQAFRSRY-GIPTVPGFVHITDGQINVRCDSSMSAQEIKD 114
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase,
glycosidase, disease mutat glycoprotein, hydrolase,
lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN
GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*
Length = 613
Score = 37.8 bits (88), Expect = 4e-04
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 71 KTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIG 108
+ V L R D V+L I A S V+VNG
Sbjct: 83 REVILPERWTQDLRTRVVLRIGSAHSYAIVWVNGVDTL 120
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 36.5 bits (83), Expect = 9e-04
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 29 NPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVL 88
+P + L ++ +CP+C+ K++F VE + + Q
Sbjct: 186 SPLAVGLAAHL-RQIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECS-PNGPGTPQAQE 243
Query: 89 LEITGARSVPRVFVNGKFIGGGTDVKALYE 118
G S P +NG+ G ++AL
Sbjct: 244 CTEAGITSYPTWIINGRTYTGVRSLEALAV 273
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding,
glutaredoxin, thioredoxin fold, crystallography, protein
binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Length = 121
Score = 35.4 bits (81), Expect = 0.001
Identities = 9/92 (9%), Positives = 29/92 (31%), Gaps = 11/92 (11%)
Query: 45 IVIFSKSYC------PYCKMAKDVFQKLKVTPKTVELDHRDDG-----DSIQDVLLEITG 93
I ++ S + + K+ + ++ ++ +++ + TG
Sbjct: 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATG 61
Query: 94 ARSVPRVFVNGKFIGGGTDVKALYEKGELHPL 125
P++F ++ G E ++
Sbjct: 62 YPLPPQIFNESQYRGDYDAFFEARENNAVYAF 93
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 36.2 bits (83), Expect = 0.001
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 18 LETLGASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDH 77
+ + ++ + + +Q + +I +F + C YC A + + +
Sbjct: 113 IFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKV 172
Query: 78 RDDGDSIQDVLLEITGARSVPRVFVNGK---FIGGGT 111
D QD L E VP++ +N F+G
Sbjct: 173 -IDASENQD-LAEQFQVVGVPKIVINKGVAEFVGAQP 207
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 35.7 bits (83), Expect = 0.002
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 17/105 (16%)
Query: 15 TSFLETL----GASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVT- 69
TS + L G SK + + ++D+ + + C C DV Q L +
Sbjct: 88 TSLVLALLWTGGHPSKE-AQSLLEQIRDIDGDFEFETYYSLSCHNCP---DVVQALNLMA 143
Query: 70 ---PKTVELDHRD-DGDSIQDVLLEITGARSVPRVFVNGKFIGGG 110
P+ + H DG + Q+ + VP VFVNGK G G
Sbjct: 144 VLNPR---IKHTAIDGGTFQN-EITERNVMGVPAVFVNGKEFGQG 184
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 33.8 bits (78), Expect = 0.003
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 17 FLETLGASSKVMNPASKQFVQDLIASEKIVI--FSKSYCPYCKMAKDVFQKL 66
+ + + + ++LI ++ F ++C CKM + KL
Sbjct: 4 HHHHHSSYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKL 55
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural
genomics, glycosidase, PSI-2, protein initiative; 2.40A
{Bacteroides vulgatus}
Length = 801
Score = 34.7 bits (80), Expect = 0.005
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 71 KTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIG 108
KT + + + V + G V++NG ++G
Sbjct: 72 KTFTIPSKWKN---KKVQILFEGVYLNSEVWINGHWLG 106
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain,
beta-sandwich domai glycosyl hydrolase, glycosida
hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB:
3k46_A* 3k4d_A* 3lpg_A* 3k4a_A
Length = 605
Score = 34.3 bits (79), Expect = 0.007
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 11/64 (17%)
Query: 71 KTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIG---GG-----TDVKALYEKGEL 122
+ V + G Q ++L +V+VN + + GG DV G+
Sbjct: 73 REVFIPKGWAG---QRIVLRFDAVTHYGKVWVNNQEVMEHQGGYTPFEADVTPYVIAGKS 129
Query: 123 HPLV 126
+
Sbjct: 130 VRIT 133
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas
hydrolase, PSI-2, protein structure initiative; 2.70A
{Bacteroides fragilis}
Length = 692
Score = 33.6 bits (77), Expect = 0.012
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 71 KTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIG 108
KT H +G + V L G + V+VNGK G
Sbjct: 66 KTQFFPHDLEG---KRVFLRFEGVGACAEVYVNGKLAG 100
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 32.6 bits (74), Expect = 0.017
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 32 SKQFVQDLIASEK----IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDV 87
SK+ V I S ++ F + P C D+ K + + D D
Sbjct: 10 SKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAV- 68
Query: 88 LLEITGARSVPRV--FVNGKFI 107
+ +P F NG+ +
Sbjct: 69 YTQYFDISYIPSTVFFFNGQHM 90
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro
structure initiative, NEW YORK SGX research center for
STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis}
Length = 667
Score = 33.2 bits (76), Expect = 0.018
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 71 KTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIG 108
K + + G + + L G S+ VF+N K IG
Sbjct: 55 KALYIRPEWKG---KRLFLRFDGVNSIADVFINRKHIG 89
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 31.5 bits (71), Expect = 0.024
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 37 QDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVE 74
D A ++++F + C YC + P T E
Sbjct: 14 DDDKAELRLLMFEQPGCLYCARWDA--EIAPQYPLTDE 49
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de
novo NAD biosynthesis, PRPP, phosphoribos transferase;
2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1
d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Length = 284
Score = 32.1 bits (74), Expect = 0.028
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 30 PASKQFVQDLIASEKIVIFSKSYCPYC--KMAKDVFQKLKVTPKTVELDHRDDGDSIQ-- 85
PAS L+ E V+ +A ++ T LD +DG +
Sbjct: 35 PASATTTASLVTREAGVV--------AGLDVALLTLNEVLGTNGYRVLDRVEDGARVPPG 86
Query: 86 DVLLEITG-ARSV 97
+ L+ + R +
Sbjct: 87 EALMTLEAQTRGL 99
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel,
hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1
b.18.1.5 b.30.5.1 c.1.8.3
Length = 1024
Score = 32.2 bits (73), Expect = 0.030
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 71 KTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIG 108
+ ++ + + + L G S +V+VNG+ IG
Sbjct: 124 RRFDVPAQWFESTTAALTLRFDGVESRYKVWVNGQEIG 161
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase,
hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A
Length = 1032
Score = 31.8 bits (72), Expect = 0.043
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 71 KTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIG 108
+T ELD + + L G + ++VNG+++G
Sbjct: 118 RTFELDSKSIES--FEHRLRFEGVDNCYELYVNGQYVG 153
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain
700825 / FA 1090), DSBC, structural genomics, unknown
funct 2; 2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 31.2 bits (70), Expect = 0.054
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 41 ASEKIVIFSKSYCPYCKMAKDVFQKLK 67
K+ +FS CP+CK + F+K+
Sbjct: 14 GKLKVAVFSDPDCPFCKRLEHEFEKMT 40
>1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated
protein, indomethacin, isomerase; HET: IMN; 2.60A
{Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB:
2pbj_A*
Length = 290
Score = 31.4 bits (70), Expect = 0.057
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 37 QDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARS 96
L + ++ ++ CP+C + + + VE++ + ++ + R
Sbjct: 7 LSLSSRLQLTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLRAE------IKFSSYRK 60
Query: 97 VPRVFVNGKFIGGGTDVKALYE 118
VP + V G + L +
Sbjct: 61 VP-ILV----AQEGESSQQLND 77
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II
(PSI-II), glycosyl hydrolase family 2, jelly-roll fold;
2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB:
3dec_A
Length = 1010
Score = 31.3 bits (71), Expect = 0.078
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 71 KTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIG 108
+T ++ G + V+L G S V+VNGK +G
Sbjct: 132 RTFKVPADWKG---RRVVLCCEGVISFYYVWVNGKLLG 166
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 0.078
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 32/90 (35%)
Query: 23 ASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGD 82
+ + ++ + + +L + + CP CK PK VE +GD
Sbjct: 2 MTRESIDKRAGRRGPNL--NIVLT------CPECK---------VYPPKIVE-RF-SEGD 42
Query: 83 SI-QD---VLLE--I-TGARSVP--RVFVN 103
+ VL + + T R F N
Sbjct: 43 VVCALCGLVLSDKLVDTR----SEWRTFSN 68
>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for
structural genomics of infectious diseases, csgid,
oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica
subsp} PDB: 1g7o_A
Length = 218
Score = 30.7 bits (69), Expect = 0.100
Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 42 SEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVF 101
S + ++ +CP+C A+ +F + + L + D + + G + VP +
Sbjct: 1 SNAMKLYIYDHCPFCVKARMIFGLKNIPVELNVLQNDD-----EATPTRMIGQKMVP-IL 54
Query: 102 V--NGKFI 107
+ +++
Sbjct: 55 QKDDSRYL 62
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown
function, STRU genomics, PSI, MCSG, protein structure
initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Length = 208
Score = 30.4 bits (68), Expect = 0.11
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVT-PKTVELDHR 78
K+ C +C K +KLK P ++ ++
Sbjct: 4 KLYYVHDPMCSWCWGYKPTIEKLKQQLPGVIQFEYV 39
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel),
jelly-roll barrel, immunoglobulin, beta supersandwich,
hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP:
b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A
1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A*
1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A*
3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ...
Length = 1023
Score = 30.6 bits (69), Expect = 0.14
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 85 QDVLLEITGARSVPRVFVNGKFIG 108
+ G S ++ NG+++G
Sbjct: 137 GQTRIIFDGVNSAFHLWCNGRWVG 160
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 28.8 bits (65), Expect = 0.16
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 21/76 (27%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEIT---------GA 94
KI +F+ CP+C AK V +++ + D+++ + + G
Sbjct: 5 KIELFTSPMCPHCPAAKRVVEEVA----------NEMPDAVEVEYINVMENPQKAMEYGI 54
Query: 95 RSVPRVFVN--GKFIG 108
+VP + +N +FIG
Sbjct: 55 MAVPTIVINGDVEFIG 70
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 29.7 bits (66), Expect = 0.18
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 25/123 (20%)
Query: 15 TSFLETL---GASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKL----- 66
+FLE + + +KQ ++++ +I++F CPYC +A + K
Sbjct: 105 AAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENT 164
Query: 67 -----KVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNG-----KFIGGGTDVKAL 116
K+ VE + + +VP++ + G K
Sbjct: 165 KAGKGKILGDMVEAIEYPE-------WADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMF 217
Query: 117 YEK 119
EK
Sbjct: 218 LEK 220
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 29.6 bits (66), Expect = 0.18
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 93 GARSVPRVFVNGKFIGGGTDVKALYEK 119
P V G+++ Y
Sbjct: 148 HIDGTPAFAVGGRYMTSPVLAGNDYAG 174
Score = 26.9 bits (59), Expect = 1.9
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKLK 67
++ F CP+C + + +
Sbjct: 29 VLEFFAYTCPHCAAIEPMVEDWA 51
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 29.3 bits (66), Expect = 0.20
Identities = 7/42 (16%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 27 VMNPASKQFVQDLIASEKIVI--FSKSYCPYCKMAKDVFQKL 66
V++ S + +++++ + + + F+ +C CK + +K+
Sbjct: 21 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKI 62
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox
protein, protein folding, redox active centre; 1.81A
{Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Length = 186
Score = 29.3 bits (66), Expect = 0.21
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 44 KIVIFSKSY-CPYCK-MAKDVFQKLK---VTPKTVELDHRD 79
+V++ Y CPYCK + + V KL+ + VE +
Sbjct: 14 LVVVYG-DYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVN 53
Score = 25.5 bits (56), Expect = 4.5
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 93 GARSVPRVFVNGKFIGGGTDVKAL 116
++ P F+NG+ + D ++
Sbjct: 146 HIKTTPTAFINGEKVEDPYDYESY 169
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR
{Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Length = 70
Score = 28.0 bits (63), Expect = 0.22
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 53 CPYCKMAKDVFQKLKVTP 70
CP C+ K+ F+ +K
Sbjct: 43 CPACRSPKNQFKSIKKVI 60
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 28.8 bits (65), Expect = 0.22
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Query: 24 SSKVMNPASKQFVQDLI--ASEKIVI--FSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD 79
V SK Q+ + A +K+V+ FS ++C KM K F L V
Sbjct: 10 HGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIF-LEV 68
Query: 80 DGDSIQDVLLEITGARSVP--RVFVNGKFIGG--GTDVKALYEK 119
D D QDV E +S+P + F G+ +G G + + L
Sbjct: 69 DVDDCQDVASEC-EVKSMPTFQFFKKGQKVGEFSGANKEKLEAT 111
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like,
oxidoreductase, competence, redox-active center; 1.40A
{Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Length = 202
Score = 29.3 bits (66), Expect = 0.25
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 44 KIVIFSKSY-CPYCK-MAKDVFQKLK 67
+V F Y CP CK D+F K++
Sbjct: 32 TVVEFG-DYKCPSCKVFNSDIFPKIQ 56
Score = 25.8 bits (57), Expect = 4.5
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 93 GARSVPRVFVNGKFIGGGTDVKAL 116
++ P ++VN K I D +
Sbjct: 160 NIQATPTIYVNDKVIKNFADYDEI 183
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.29
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 21/78 (26%)
Query: 25 SKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSI 84
S ++ PAS +DL+ + V F+ AKD +++ P V DG +
Sbjct: 429 SHLLVPASDLINKDLVKNN--VSFN---------AKD----IQI-P--VY--DTFDGSDL 468
Query: 85 QDVLLEITGARSVPRVFV 102
+ + I+ R V +
Sbjct: 469 RVLSGSIS-ERIVDCIIR 485
>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A
{Vaccinia virus}
Length = 124
Score = 28.5 bits (63), Expect = 0.31
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 43 EKIVIFSKSYCPYCKMAKDVFQKLK 67
++IF K YC C+ D ++LK
Sbjct: 3 NVLIIFGKPYCSICENVSDAVEELK 27
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein,
redox-active center; HET: MES; 1.90A {Escherichia coli}
SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
2iyj_A
Length = 216
Score = 29.1 bits (64), Expect = 0.32
Identities = 7/73 (9%), Positives = 15/73 (20%)
Query: 5 DLEQFNFGLKTSFLETLGASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQ 64
+ + + + + I +F+ C YC +
Sbjct: 50 PMYDVSGTAPVNVTNKMLLKQLNALEKEMIVYKAPQEKHVITVFTDITCGYCHKLHEQMA 109
Query: 65 KLKVTPKTVELDH 77
TV
Sbjct: 110 DYNALGITVRYLA 122
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 28.9 bits (64), Expect = 0.33
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 45 IVIFSKSYCPYCK-MAKDVFQKLKV 68
+VI C Y + + K Q ++
Sbjct: 48 MVIHHLEDCQYSQALKKVFAQNEEI 72
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural
genomics, PSI, protein structure initiative; NMR
{Nitrosomonas europaea}
Length = 107
Score = 28.2 bits (63), Expect = 0.39
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQDVLLEITGARSVP--RV 100
K+V++ + C C+ + L+ EL+ + DG+ + L + R VP
Sbjct: 31 KLVVYGREGCHLCEEMIASLRVLQ-KKSWFELEVINIDGN---EHLTRLYNDR-VPVLFA 85
Query: 101 FVNGKFIG 108
K +
Sbjct: 86 VNEDKELC 93
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 28.9 bits (64), Expect = 0.41
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 93 GARSVPRVFVNGKFIGGGTDVKALYE 118
P + VNG+++ G D +
Sbjct: 152 RPVGTPTIVVNGRYMVTGHDFEDTLR 177
Score = 25.5 bits (55), Expect = 5.5
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 44 KIVIFSKSYCPYCK-MAKDVFQKLKVTPKTVELDHR 78
++V CP+C + K V
Sbjct: 28 EVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLV 63
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine,
glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis
orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5
c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A*
2vzu_A*
Length = 1032
Score = 28.9 bits (64), Expect = 0.56
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 82 DSIQDVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGEL 122
D+ L+ +G S V+VNG + V Y + +L
Sbjct: 131 DTSSRTYLDFSGVLSKADVWVNGTKVATKDQVNGAYTRHDL 171
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.60
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 13/42 (30%)
Query: 33 KQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVE 74
KQ ++ L AS K+ Y D L + T+E
Sbjct: 19 KQALKKLQASLKL------YAD------DSAPALAIK-ATME 47
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula}
SCOP: c.47.1.1
Length = 113
Score = 27.7 bits (62), Expect = 0.70
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 22 GASSKVMNPAS----KQFVQDLIASEKIVI--FSKSYCPYCKMAKDVFQKL 66
+V+ + K+ + S+K+++ F+ S+CP CKM +F +L
Sbjct: 1 AEEGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAEL 51
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 27.8 bits (62), Expect = 0.76
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 14/108 (12%)
Query: 23 ASSKVMNPASK----QFVQDLIASEKIVI--FSKSYCPYCKMAKDVFQKL-KVTPKTVEL 75
A V +K Q + + KIV+ FS +C + + +L + P + L
Sbjct: 22 AGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFL 81
Query: 76 DHRDDGDSIQDVLLEITGARSVP--RVFVNGKFIGG--GTDVKALYEK 119
D D + D ++ P +G+ + G + L++K
Sbjct: 82 --VIDVDELSDFSASW-EIKATPTFFFLRDGQQVDKLVGANKPELHKK 126
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur
protein, oxidoreductase, ELE transfer, electron
transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas
aeruginosa}
Length = 55
Score = 26.4 bits (59), Expect = 0.86
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 53 CPYCKMAKDVFQKLKV 68
CP C + K F+ +++
Sbjct: 39 CPDCGVGKIDFEMIEI 54
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 27.9 bits (62), Expect = 0.86
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 30 PASKQFVQDLI---ASEKI--VIFSKSYCPY----CKMAKDVFQKLK 67
K++VQD++ +E + + + Y MA DV + ++
Sbjct: 576 DRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQ 622
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP:
c.47.1.13
Length = 175
Score = 27.4 bits (61), Expect = 0.91
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 71 KTVELDHRDDGDSIQDVLLEIT--GARSVPRVFVNGKFIGGGTDVKAL 116
K + L + D + V+ E + VP + + + L
Sbjct: 122 KNLGLKEQKDATLVSAVIAEANAAHIQFVPTIIIGEYIFDESVTEEEL 169
Score = 26.3 bits (58), Expect = 2.3
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 44 KIVIFSKSY-CPYCKMA-KDVFQKLK--VTPKTVELDHRD 79
K++ F + CPYC+ ++ + L V VE +
Sbjct: 30 KMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIKL 68
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain,
FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus
norvegicus} SCOP: b.43.4.1 c.25.1.4
Length = 435
Score = 28.1 bits (63), Expect = 0.93
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 30 PASKQFVQDLI---ASEKI--VIFSKSYCPY----CKMAKDVFQKLK 67
K++VQD++ +E + + + Y MA DV + ++
Sbjct: 355 DRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQ 401
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB:
3dvw_A 3a3t_A
Length = 193
Score = 27.8 bits (61), Expect = 0.95
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 93 GARSVPRVFVNGKFIGGGTDVKALYE 118
VP V V GK+ D ++
Sbjct: 151 QIDGVPTVIVGGKYKVEFADWESGMN 176
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 27.4 bits (61), Expect = 0.97
Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 19 ETLGASSKVMNPASK----QFVQDLIASEKIVI--FSKSYCPYCKMAKDVFQKL 66
+++V++ S +++ ++K+V+ F+ S+C C++ VF L
Sbjct: 6 TAAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADL 59
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 27.3 bits (60), Expect = 1.00
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 45 IVIFSKSYCPYCK-MAKDVF---QKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPR- 99
+VI KS+C CK + + +++ V ++ D+ + + G +PR
Sbjct: 50 MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGY--IPRI 107
Query: 100 VFVN------GKFIGGGTDVKALYEKGELHPLVQ 127
+F++ + I + Y +VQ
Sbjct: 108 LFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQ 141
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold,
oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis}
PDB: 3f4r_A* 3f4t_A*
Length = 226
Score = 27.5 bits (61), Expect = 1.1
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 44 KIVIFSKSYCPYCK-MAKDVFQKLK---VTPKTVELDHRD 79
++ ++ C +C ++VF K+K + + R
Sbjct: 42 LMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRH 81
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle
structural genomics center for infectious electron
transport, iron; NMR {Mycobacterium tuberculosis}
Length = 81
Score = 26.6 bits (59), Expect = 1.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 53 CPYCKMAKDVFQKLKVT 69
CP C AK F+ ++V
Sbjct: 63 CPDCGAAKSDFEMVEVA 79
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 27.0 bits (60), Expect = 1.2
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 17 FLETLGASSKVMNPASK----QFVQDLIASEKIVI--FSKSYCPYCKMAKDVFQKL 66
LE +V+ + + +Q S+ +V+ F+ S+C C+ F L
Sbjct: 8 HLEMASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADL 63
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 26.9 bits (59), Expect = 1.6
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 41 ASEKIVIFSKSYCPYCKMAKDVFQKL 66
A + +F+ +CPYCK +
Sbjct: 97 APVIVYVFADPFCPYCKQFWQQARPW 122
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 26.6 bits (59), Expect = 1.6
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 45 IVIFSKSYCPYCK-MAKDVFQKLKV 68
+V F +CPYC+ M V V
Sbjct: 23 MVYFHSEHCPYCQQMNTFVLSDPGV 47
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein;
2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Length = 211
Score = 26.8 bits (58), Expect = 1.8
Identities = 6/41 (14%), Positives = 11/41 (26%)
Query: 41 ASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDG 81
+ +F C YC + ++ TV
Sbjct: 86 EKHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRA 126
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin
fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 26.9 bits (58), Expect = 1.9
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 33 KQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKL 66
+ + IV+F C C+ F K
Sbjct: 34 SRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKF 67
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 26.1 bits (58), Expect = 2.1
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 27 VMNPASKQFVQDLI--ASEKIVI--FSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGD 82
V SK Q+ + A +K+V+ FS ++C CKM K F L V D D
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIF-LEVDVD 60
Query: 83 SIQDVLLEITGARSVP--RVFVNGKFIGG--GTDVKALYEK 119
QDV E +S+P + F G+ +G G + + L
Sbjct: 61 DCQDVASES-EVKSMPTFQFFKKGQKVGEFSGANKEKLEAT 100
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi
DSS-3, thioredoxin-like, oxidoreductase, structural
genomics, PSI-2; HET: MSE; 1.76A {Silicibacter
pomeroyi}
Length = 175
Score = 26.5 bits (59), Expect = 2.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 45 IVIFSKSY-CPYCKMAKDVFQKLKVTPKTVELDHRD 79
+V F Y CPYC+ A Q L V L +R+
Sbjct: 26 VVEFF-DYNCPYCRRAMAEVQGLVDADPNVRLVYRE 60
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 26.6 bits (58), Expect = 2.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 93 GARSVPRVFVNGKFIGGGTDVK 114
G VP V VN +++ G VK
Sbjct: 144 GLTGVPAVVVNNRYLVQGQSVK 165
Score = 25.1 bits (54), Expect = 6.7
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKL-KVTPKTVEL 75
+ F YCP+C + + +L + P+ +
Sbjct: 22 VSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKF 53
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC,
structu genomics, protein structure initiative; 1.76A
{Novosphingobium aromaticivorans}
Length = 205
Score = 26.5 bits (58), Expect = 2.5
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 44 KIVIFSKSYCPYCK-MAKDVFQKLK 67
++V F CP+C + +LK
Sbjct: 18 RLVEFVSYTCPHCSHFEIESEGQLK 42
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A
{Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A
1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A
1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A
1smw_A 1be7_A 1t9o_A ...
Length = 54
Score = 24.8 bits (55), Expect = 3.0
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 53 CPYCKMAKDVFQKLK 67
CP C + KD F++++
Sbjct: 39 CPLCGVGKDEFEEVE 53
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP:
c.56.5.4 d.58.19.1
Length = 470
Score = 26.5 bits (58), Expect = 3.5
Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 11/65 (16%)
Query: 57 KMAKDVFQKLKVTPKTVELDHRDDGDS-----IQDVLLEITGARSVPRVFVNGKFIGGGT 111
++ L VT E H G + V + TG V IGGGT
Sbjct: 363 QVLDKFSGILDVTYNGFEEPHYVPGSDPMVQTLLKVYEKQTGKPGHEVV------IGGGT 416
Query: 112 DVKAL 116
+
Sbjct: 417 YGRLF 421
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide
isomerase, struc genomics, PSI-2, protein structure
initiative; 1.85A {Nitrosomonas europaea}
Length = 216
Score = 26.1 bits (57), Expect = 3.8
Identities = 3/36 (8%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVT-PKTVELDHR 78
+ + C +C V + ++ + +
Sbjct: 9 VLWYIADPMCSWCWGFAPVIENIRQEYSAFLTVKIM 44
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Length = 239
Score = 26.0 bits (56), Expect = 3.9
Identities = 6/47 (12%), Positives = 14/47 (29%), Gaps = 6/47 (12%)
Query: 78 RDDGDSIQDVLLEITGAR-----SVPRVFVNGKF-IGGGTDVKALYE 118
D +V + A VP ++ + + G + +
Sbjct: 160 ADPAAYADEVRADEREAAQLGATGVPFFVLDRAYGVSGAQPAEVFTQ 206
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella
enterica subsp}
Length = 189
Score = 25.7 bits (55), Expect = 4.0
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 93 GARSVPRVFVNGKFIGGGTDVKAL 116
G R P V+V G++ A
Sbjct: 142 GVRGTPSVYVRGRYHINNAAFGAF 165
>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu
initiative, PSI, midwest center for structural genomics;
1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24
Length = 332
Score = 25.9 bits (56), Expect = 4.1
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 11 FGLKTSFLETLGASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCK 57
G+K +E + S P +++ + L V+ S SY Y +
Sbjct: 87 AGVKNRDVERIAELSAKFVPDAEKAMATLQERWTPVVISTSYTQYLR 133
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 25.9 bits (56), Expect = 4.1
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 93 GARSVPRVFVNGKFIGGGTDVK 114
VP + VNGK+
Sbjct: 149 QVTGVPTMVVNGKYRFDIGSAG 170
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi}
PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A
3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A
1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Length = 52
Score = 24.1 bits (53), Expect = 4.7
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 53 CPYCKMAKDVFQKLK 67
CP C K F++++
Sbjct: 38 CPLCGAPKSEFERIE 52
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution,
thermostability; NMR {Desulfovibrio gigas} SCOP:
g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Length = 52
Score = 24.1 bits (53), Expect = 5.0
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 53 CPYCKMAKDVFQK 65
CP C +KD F+K
Sbjct: 39 CPVCGASKDAFEK 51
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 25.3 bits (56), Expect = 6.0
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 59 AKDVFQKLK---VTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVNGKFIGGGT---- 111
++V +K++ VE + D + +L G V R + KF G
Sbjct: 229 PEEVERKIRKAYCPAGVVEEN--PILDIAKYHILPRFGKIVVER---DAKFGGDVEYASF 283
Query: 112 -DVKALYEKGELHPL 125
++ ++ G+LHPL
Sbjct: 284 EELAEDFKSGQLHPL 298
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase,
FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB:
3lvb_A* 1jb9_A*
Length = 311
Score = 25.5 bits (56), Expect = 6.4
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 31 ASKQFVQDLIASEKIVIFS----KSY---CPYCKMAKDVFQKLK 67
K +VQD I IF ++ C M + LK
Sbjct: 240 GGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPGIQDTLK 283
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 24.7 bits (54), Expect = 7.5
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 22 GASSKVMNPASK----QFVQDLIASEKIVI--FSKSYCPYCKMAKDVFQKL 66
V+ +K + + K+VI F+ S+C C+ VF +
Sbjct: 11 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEY 61
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR,
reductase reductase, phycobilisome, thylakoid; HET: FAD;
1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A*
2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A*
1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A*
1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Length = 304
Score = 25.0 bits (55), Expect = 8.7
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 31 ASKQFVQDLIASEKIVIFS-----KSY---CPYCKMAKDVFQKLK 67
+ ++QD +A ++ K++ C M + + L
Sbjct: 232 GGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPPPMEEGIDAALS 276
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 25.0 bits (53), Expect = 9.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 93 GARSVPRVFVNGKFI 107
G SVP VNGK+
Sbjct: 149 GISSVPTFVVNGKYN 163
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA,
thiol-disulfide oxidoreductase, DISU bond, redox-active
center; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A*
3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Length = 191
Score = 24.9 bits (53), Expect = 9.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 93 GARSVPRVFVNGKFI 107
+ VP +FVNGK+
Sbjct: 148 QLQGVPAMFVNGKYQ 162
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine
dinucleotide, iron-sulfur, metal-binding,
molybdopterin; HET: MGD; 2.40A {Thermus thermophilus}
PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Length = 765
Score = 24.9 bits (55), Expect = 9.6
Identities = 10/44 (22%), Positives = 12/44 (27%), Gaps = 3/44 (6%)
Query: 13 LKTSFLETLGASSKVMNPASKQFVQDLIASEKIVIFSKSYCPYC 56
LK S L + + PA K V C C
Sbjct: 7 LKLSALGVGAMALRGSGPAKALKAPWYAQEVKSV---YQICEGC 47
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 24.8 bits (54), Expect = 9.7
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 18/98 (18%)
Query: 23 ASSKVMNPASKQFVQDLIASEK---IVIFSKSYCPYCKMAKDVFQKL------KVTPKTV 73
+ ++N Q L S + F +C + + L + +
Sbjct: 5 SVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKL 64
Query: 74 ELDHRDDGDSIQDVLLEITGARSVP--RVFVNGKFIGG 109
D D+ Q + + G R++P +F NG+ + G
Sbjct: 65 ------DCDAEQMIAAQF-GLRAIPTVYLFQNGQPVDG 95
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 24.2 bits (53), Expect = 9.7
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 26 KVMNPASKQFVQDLIASEKIVI--FSKSYCPYCKMAKDVFQKL 66
+ + + I F K+ CP+CK + V K
Sbjct: 2 SAIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKF 44
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 24.9 bits (53), Expect = 9.8
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 93 GARSVPRVFVNGKFIGGGTDVK 114
+ VP VNGK++ +K
Sbjct: 159 KIQGVPAYVVNGKYLIYTKSIK 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.395
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,893,702
Number of extensions: 103971
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 145
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)