RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1889
(127 letters)
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 105
Score = 97.1 bits (241), Expect = 5e-28
Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Query: 32 SKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD---DGDSIQDVL 88
++ FV I K+V+F K CP+C+ +++ +L +E D + IQD L
Sbjct: 1 AQAFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYL 60
Query: 89 LEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
++TGAR+VPRVF+ + IGG TD+++++++GEL +Q
Sbjct: 61 QQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQ 99
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli, Grx3 [TaxId: 562]}
Length = 82
Score = 82.7 bits (204), Expect = 1e-22
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
+ I++K CPYC AK + V+ + + D + ++ +++ +G +VP++F++
Sbjct: 2 NVEIYTKETCPYCHRAKALLSSKGVSFQEL---PIDGNAAKREEMIKRSGRTTVPQIFID 58
Query: 104 GKFIGGGTDVKALYEKGELHPLVQ 127
+ IGG D+ AL +G L PL++
Sbjct: 59 AQHIGGYDDLYALDARGGLDPLLK 82
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 109
Score = 80.8 bits (199), Expect = 1e-21
Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 31 ASKQFVQDLIASEKIVIFSK-----SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQ 85
+ ++ L +++F K + C + K ++ V +T ++ + ++
Sbjct: 3 SGSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE---DEEVR 59
Query: 86 DVLLEITGARSVPRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
L + + P+++V G +GG VK L + GEL P+++
Sbjct: 60 QGLKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILK 101
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli [TaxId: 562]}
Length = 85
Score = 77.4 bits (190), Expect = 1e-20
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTV---ELDHRDDGDSIQDVLLEI-TGARSVPR 99
+ VIF +S CPYC AKD+ +KL +D R +G + +D+ + +VP+
Sbjct: 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQ 61
Query: 100 VFVNGKFIGGGTDVKALYEK 119
+FV+ + IGG TD A ++
Sbjct: 62 IFVDQQHIGGYTDFAAWVKE 81
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5
{Haemophilus influenzae [TaxId: 727]}
Length = 74
Score = 74.2 bits (182), Expect = 2e-19
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 43 EKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFV 102
E I IF+K CP+C AK + ++ + + L H D+ + ++G +VP+VF+
Sbjct: 5 ESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGH----DATIVSVRAVSGRTTVPQVFI 60
Query: 103 NGKFIGGGTDVK 114
GK IGG D++
Sbjct: 61 GGKHIGGSDDLE 72
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 74
Score = 63.1 bits (153), Expect = 3e-15
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
I +++K C C K + + TV++ D+ + G P V V+
Sbjct: 2 SITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDEARD----YVMALGYVQAPVVEVD 57
Query: 104 GKFIGG 109
G+ G
Sbjct: 58 GEHWSG 63
>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Bacteriophage T4 [TaxId: 10665]}
Length = 87
Score = 60.5 bits (146), Expect = 5e-14
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 49 SKSYCPYCKMAKDVFQKLKVTPKTV---ELDHRDDGDSIQDVLLEI----TGARSVPRVF 101
+ C C AK + K + + D + I ++L ++ ++P+VF
Sbjct: 10 NIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVF 69
Query: 102 V-NGKFIGGGTDVKALYE 118
+G IGG ++ ++
Sbjct: 70 APDGSHIGGFDQLREYFK 87
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia
coli [TaxId: 562]}
Length = 76
Score = 60.1 bits (145), Expect = 6e-14
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
+I I++++ C C K + + + +D + L G R +P V
Sbjct: 2 RITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAE----ALRAQGFRQLPVVIAG 57
Query: 104 GKFIGG--GTDVKALYE 118
G + L+
Sbjct: 58 DLSWSGFRPDMINRLHP 74
>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 93
Score = 52.2 bits (125), Expect = 1e-10
Identities = 9/90 (10%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 44 KIVIFSKSYC------PYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSV 97
+ ++S S + ++ + V++ D+ + L +
Sbjct: 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQ-DNALRDEMRTLAGNPKATP 61
Query: 98 PRVFVNGKFIGGGTDVKALYEKGELHPLVQ 127
P++ + G E+ L ++
Sbjct: 62 PQIVNGNHYCGDYELFVEAVEQDTLQEFLK 91
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 85
Score = 37.0 bits (85), Expect = 5e-05
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
I +F+ CPYC MA +V + K + D ++ G +VP + +N
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE-KAIEYGLMAVPAIAIN 62
Query: 104 G--KFIG 108
G +F+G
Sbjct: 63 GVVRFVG 69
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit
F (AhpF), N-terminal domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 96
Score = 33.9 bits (77), Expect = 0.001
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVPRVFVN 103
+ + C C + V ++ D G ++ VP VFVN
Sbjct: 18 EFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEI--TERNVMGVPAVFVN 75
Query: 104 GKFIGGG 110
GK G G
Sbjct: 76 GKEFGQG 82
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein
C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}
Length = 100
Score = 33.6 bits (76), Expect = 0.001
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 7/87 (8%)
Query: 37 QDLIASEK----IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEIT 92
+L AS + + +F+K+ CP C AK+V Q K E+D + E
Sbjct: 7 GNLSASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPEN---STWYERY 63
Query: 93 GARSVPRVFVNGKFIGGGTDVKALYEK 119
+ + L ++
Sbjct: 64 KFDIPVFHLNGQFLMMHRVNTSKLEKQ 90
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 85
Score = 30.7 bits (68), Expect = 0.013
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSVP--RVF 101
KI +F+ CP+C AK V +++ + G +VP +
Sbjct: 5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQK-AMEYGIMAVPTIVIN 63
Query: 102 VNGKFIGG 109
+ +FIG
Sbjct: 64 GDVEFIGA 71
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 30.7 bits (68), Expect = 0.019
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 26 KVMNPASKQFVQDLIASEK--IVIFSKSYCPYCKMAKDVFQ 64
K + + Q+ + ++ + CPYC+
Sbjct: 9 KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLS 49
>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas
campestris [TaxId: 339]}
Length = 75
Score = 28.3 bits (63), Expect = 0.076
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 45 IVIFSKSYCPYCKMAKDVF-QKLKVTPKTVELDHRDD 80
+ ++ + C C A + Q +V +D
Sbjct: 2 LTLYQRDDCHLCDQAVEALAQARAGAFFSVFIDDDAA 38
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 29.3 bits (65), Expect = 0.083
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 14/109 (12%)
Query: 32 SKQFVQDLIASEK----IVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDV 87
+ V I SE+ ++ F + P C +V + K + + D + D
Sbjct: 9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDF 68
Query: 88 LLEITGARSVPRV--FVNGK----FIGGGTDVK---ALYEKGELHPLVQ 127
++ V F K +G G + K A+ +K E+ +++
Sbjct: 69 -NKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIE 116
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId:
55529]}
Length = 70
Score = 25.9 bits (57), Expect = 0.56
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 53 CPYCKMAKDVFQKLKVTP 70
CP C+ K+ F+ +K
Sbjct: 43 CPACRSPKNQFKSIKKVI 60
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli
[TaxId: 562]}
Length = 207
Score = 27.1 bits (59), Expect = 0.60
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 85 QDVLLEITGARSVPRVFVNGKFIGGGTD 112
+ G S ++ NG+++G G D
Sbjct: 125 GQTRIIFDGVNSAFHLWCNGRWVGYGQD 152
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator
(DsbA) {Vibrio cholerae [TaxId: 666]}
Length = 181
Score = 26.9 bits (58), Expect = 0.64
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 41 ASEKIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHR 78
+S + F YCP+C + + +LK +
Sbjct: 18 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQK 55
Score = 26.5 bits (57), Expect = 0.94
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 93 GARSVPRVFVNGKFIGGGTDVK 114
G VP V VN +++ G VK
Sbjct: 144 GLTGVPAVVVNNRYLVQGQSVK 165
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 53
Score = 25.0 bits (55), Expect = 0.84
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 53 CPYCKMAKDVFQKLK 67
CP C K F+KL+
Sbjct: 38 CPICGAPKSEFEKLE 52
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 107
Score = 25.6 bits (55), Expect = 1.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 29 NPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQK 65
+KQ ++++ +I++F CPYC +A + K
Sbjct: 3 MDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHK 39
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp.
c2-2 [TaxId: 192168]}
Length = 216
Score = 26.3 bits (57), Expect = 1.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 85 QDVLLEITGARSVPRVFVNGKFIG 108
+ L G S +V+VNG+ IG
Sbjct: 134 AALTLRFDGVESRYKVWVNGQEIG 157
>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770
{Enterococcus faecalis [TaxId: 1351]}
Length = 172
Score = 26.1 bits (56), Expect = 1.0
Identities = 3/24 (12%), Positives = 7/24 (29%)
Query: 93 GARSVPRVFVNGKFIGGGTDVKAL 116
+ VP + + + L
Sbjct: 143 HIQFVPTIIIGEYIFDESVTEEEL 166
Score = 25.3 bits (54), Expect = 2.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 41 ASEKIVIFSKSYCPYCKMA 59
A K++ F CPYC+
Sbjct: 24 APVKMIEFINVRCPYCRKW 42
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum
[TaxId: 1501]}
Length = 53
Score = 24.7 bits (54), Expect = 1.2
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 53 CPYCKMAKDVFQKLK 67
CP C + KD F++++
Sbjct: 39 CPLCGVGKDQFEEVE 53
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 156
Score = 25.9 bits (56), Expect = 1.2
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKLKVTPKTV 73
I +F+ C YC + TV
Sbjct: 30 ITVFTDITCGYCHKLHEQMADYNALGITV 58
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 166
Score = 26.1 bits (56), Expect = 1.3
Identities = 6/43 (13%), Positives = 18/43 (41%)
Query: 24 SSKVMNPASKQFVQDLIASEKIVIFSKSYCPYCKMAKDVFQKL 66
S + A + +Q + ++++ + +CP C++
Sbjct: 37 ESNGLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFA 79
>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC,
C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Length = 150
Score = 25.5 bits (55), Expect = 1.6
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 45 IVIFSKSYCPYCKMAKDVFQKL 66
+ +F C YC + ++
Sbjct: 30 VTVFMDITCHYCHLLHQQLKEY 51
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId:
879]}
Length = 52
Score = 23.9 bits (52), Expect = 2.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 53 CPYCKMAKDVFQK 65
CP C +KD F+K
Sbjct: 39 CPVCGASKDAFEK 51
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 25.3 bits (54), Expect = 2.6
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 47 IFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLE------ITGARSVPRV 100
+ +DVF + + E D + ++ ++ + R VP +
Sbjct: 96 VQKTQTIRSASDIRDVFINAGIKGE--EYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAM 153
Query: 101 FVNGKFI 107
FVNGK+
Sbjct: 154 FVNGKYQ 160
Score = 24.9 bits (53), Expect = 3.4
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHR 78
+++ F +CP+C ++V K + +
Sbjct: 21 QVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVK 55
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
{Escherichia coli [TaxId: 562]}
Length = 132
Score = 24.6 bits (53), Expect = 2.7
Identities = 5/41 (12%), Positives = 12/41 (29%), Gaps = 4/41 (9%)
Query: 30 PASKQFVQDLIASEK----IVIFSKSYCPYCKMAKDVFQKL 66
P S+ + D + ++ P + +L
Sbjct: 21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGEL 61
>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E
synthase-2 {Crab-eating macaque (Macaca fascicularis)
[TaxId: 9541]}
Length = 113
Score = 24.4 bits (52), Expect = 3.5
Identities = 5/39 (12%), Positives = 16/39 (41%)
Query: 44 KIVIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGD 82
++ ++ CP+C + + + VE++ +
Sbjct: 2 QLTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLRAE 40
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 37
Score = 23.1 bits (50), Expect = 3.5
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 53 CPYCKMAKDVFQKLK 67
CP C K+ F +
Sbjct: 23 CPVCGAPKEKFVVFE 37
>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein
DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 169
Score = 24.4 bits (52), Expect = 3.7
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 24 SSKVMNPASKQFVQDLIASE-----------KIVIFSKSYCPYCKMAKDVFQKLKVTPKT 72
++ PA ++ Q + S + +F+ +CPYCK + V
Sbjct: 8 EKEIYAPAGREMWQRMEQSHWLLDGKKDAPVIVYVFADPFCPYCKQFWQQARPW-VDSGK 66
Query: 73 VELDHRDDG 81
V+L G
Sbjct: 67 VQLRTLLVG 75
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans
[TaxId: 301]}
Length = 56
Score = 23.1 bits (50), Expect = 4.3
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 53 CPYCKMAKDVFQKL 66
CP C K+ +
Sbjct: 40 CPDCGATKEDYVLY 53
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 24.8 bits (52), Expect = 4.3
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 92 TGARSVPRVFVNGKFIGGGTDVKALYE 118
+++P +F G GG + KAL
Sbjct: 331 KMEKNLPGLFYAGNHRGGLSVGKALSS 357
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4
and 5 {Penicillium sp. [TaxId: 5081]}
Length = 182
Score = 24.3 bits (52), Expect = 5.5
Identities = 3/27 (11%), Positives = 9/27 (33%)
Query: 87 VLLEITGARSVPRVFVNGKFIGGGTDV 113
+ G +++N ++G
Sbjct: 81 FVQTKGGTAYGHSIWINETYVGSWAGT 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.395
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 457,468
Number of extensions: 19212
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 45
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.7 bits)