RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy189
         (171 letters)



>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD.  Members of
           this family are implicated in bringing cargo forward
           from the ER and binding to coat proteins by their
           cytoplasmic domains. This domain corresponds closely to
           the beta-strand rich GOLD domain described in. The GOLD
           domain is always found combined with lipid- or
           membrane-association domains.
          Length = 178

 Score = 81.2 bits (201), Expect = 9e-20
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 71  ELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPT---KEIIYRQVKSQ 127
            LTFEL    +ECF+E++ + T V   +QV++GG  D+D +I  P      I  ++ +  
Sbjct: 1   ALTFELPAGEKECFYEEVPKGTLVTGSYQVISGGNLDIDFTITDPDGNGNVIYSKEDRKS 60

Query: 128 FDTHQFVTLVEGTYVVCFSNEFSTYSS 154
                F     G Y  CFSN FST+SS
Sbjct: 61  GGKFSFTATESGEYKFCFSNSFSTFSS 87


>gnl|CDD|235594 PRK05761, PRK05761, DNA polymerase I; Reviewed.
          Length = 787

 Score = 30.0 bits (68), Expect = 0.62
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 69  AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF 128
           AV        +    +  DIK     I +  ++ G  YDV   +E+   EI+  ++K  F
Sbjct: 108 AVRRLRLSVRDIPRAWEADIKYEFRYIYDNGLIPGMPYDVKNGLESVEPEILVEEIKKAF 167

Query: 129 D 129
            
Sbjct: 168 K 168


>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
           membrane\ATP-binding components; Provisional.
          Length = 592

 Score = 28.1 bits (63), Expect = 2.4
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 11/80 (13%)

Query: 62  ILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDV-DVSIEAPTKEII 120
           +L Q V A E  FEL D  R+ +  D           + +  G+ D+ +VS       ++
Sbjct: 307 MLQQAVVAGERVFELMDGPRQQYGNDD----------RPLQSGRIDIDNVSFAYRDDNLV 356

Query: 121 YRQVKSQFDTHQFVTLVEGT 140
            + +     +  FV LV  T
Sbjct: 357 LQNINLSVPSRGFVALVGHT 376


>gnl|CDD|223121 COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and
           related decarboxylases [Coenzyme metabolism].
          Length = 477

 Score = 28.0 bits (63), Expect = 3.0
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 101 VTGGKYDVDVSIEAPTKEIIYRQVKSQF 128
           V G     D  +    +EI    +K Q 
Sbjct: 307 VPGKPPHEDALMGVALEEIFLPLLKKQV 334


>gnl|CDD|224951 COG2040, MHT1, Homocysteine/selenocysteine methylase
           (S-methylmethionine-dependent) [Amino acid transport and
           metabolism].
          Length = 300

 Score = 26.9 bits (60), Expect = 4.9
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 12/68 (17%)

Query: 27  YFTDYERHNSEIATFHLDRISMLLKK--QWIGFFFLLILHQ---IVQAVE-------LTF 74
           Y  DY      +  FH  RI  L +     +    L  + +   IVQ V+       ++F
Sbjct: 121 YRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEFSKPAWISF 180

Query: 75  ELADNARE 82
            L D+ R 
Sbjct: 181 TLNDDTRL 188


>gnl|CDD|223622 COG0548, ArgB, Acetylglutamate kinase [Amino acid transport and
           metabolism].
          Length = 265

 Score = 26.8 bits (60), Expect = 5.2
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 78  DNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVT 135
           +N  E F  DI    SV +   VV GG   +D  +           ++ +F     VT
Sbjct: 17  ENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAK-------LGIEPEFVKGLRVT 67


>gnl|CDD|202582 pfam03248, Rer1, Rer1 family.  RER1 family protein are involved
          in involved in the retrieval of some endoplasmic
          reticulum membrane proteins from the early golgi
          compartment. The C terminus of yeast Rer1p interacts
          with a coatomer complex.
          Length = 175

 Score = 26.4 bits (59), Expect = 6.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 43 LDRISMLLKKQWIGFFFLLIL 63
          LD+ +     +WI F FLL L
Sbjct: 18 LDKTTPHTAYRWIFFLFLLFL 38


>gnl|CDD|236775 PRK10852, PRK10852, thiosulfate transporter subunit; Provisional.
          Length = 338

 Score = 26.6 bits (59), Expect = 7.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 49 LLKKQWIGFFFLLILHQIVQAVELTFELADNARECF 84
          LLKK  +     L+L    QA EL     D +RE F
Sbjct: 5  LLKKNSLALAASLLLAGQAQATELLNSSYDVSRELF 40


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0788    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,598,004
Number of extensions: 783241
Number of successful extensions: 810
Number of sequences better than 10.0: 1
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 23
Length of query: 171
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 81
Effective length of database: 6,945,742
Effective search space: 562605102
Effective search space used: 562605102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.9 bits)