RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy189
         (171 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.8 bits (69), Expect = 0.25
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 54/198 (27%)

Query: 5   GSLEGSAF----AMFP-----RDQ--QTLPNHFYFTDYERHNSE-------IATFHLDRI 46
           GSLE        A F      ++Q  + LP     T+    + E       +  F L  +
Sbjct: 14  GSLEHV-LLVPTASFFIASQLQEQFNKILPEP---TEGFAADDEPTTPAELVGKF-LGYV 68

Query: 47  SMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDI--------KRNTSVILEF 98
           S L++   +G F   +L+  +   E  + L  N       DI        + N + +++ 
Sbjct: 69  SSLVEPSKVGQF-DQVLNLCLTEFENCY-LEGN-------DIHALAAKLLQENDTTLVKT 119

Query: 99  QVVTGGKYDVDVSIEAPTKE----IIYRQVKSQFDTHQFVTLV--EGTYVVCFSNE---- 148
           + +        +  + P  +     ++R V       Q V +   +G     F  E    
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGE--GNAQLVAIFGGQGNTDDYFE-ELRDL 176

Query: 149 FSTYSSALE-VISTHAAV 165
           + TY   +  +I   A  
Sbjct: 177 YQTYHVLVGDLIKFSAET 194



 Score = 27.7 bits (61), Expect = 2.1
 Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 76   LADNARECFFEDIKRNTSVILE---F-----QVVTGGKYDVDVSIEAPTKEIIYRQVKS 126
             +  A +   E + + T  ++E   +     Q V  G  D+  +++  T  + + +++ 
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG--DL-RALDTVTNVLNFIKLQK 1876


>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A
           {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB:
           1vix_A
          Length = 417

 Score = 27.9 bits (62), Expect = 2.0
 Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 55  IGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEA 114
            GF+ L  +   V   E+ + + D  R+ F    ++   +  +          +++ IE 
Sbjct: 258 EGFYHLASMKGTVDRAEMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIED 317

Query: 115 PTKEIIYRQVKSQFDTHQFV 134
                 Y  ++ +   H  +
Sbjct: 318 S-----YYNMREKVVEHPHI 332


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 2.5
 Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 9/60 (15%)

Query: 11  AFAMFPRD----QQTLPNHFYFTDYERHNSEIATFHLDRISMLLKKQWIGFFFLLILHQI 66
             ++FP         L     + D  + +  +    L + S L++KQ       + +  I
Sbjct: 377 RLSVFPPSAHIPTILLS--LIWFDVIKSDVMVVVNKLHKYS-LVEKQP--KESTISIPSI 431


>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
           biosynthesis, oxidized vitamin E, lipid-binding,
           transport, transcription regulation; HET: VTQ; 1.95A
           {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
           1o6u_A* 1olm_E*
          Length = 403

 Score = 26.8 bits (59), Expect = 3.5
 Identities = 6/23 (26%), Positives = 9/23 (39%)

Query: 132 QFVTLVEGTYVVCFSNEFSTYSS 154
                  G YV+ F N +S   +
Sbjct: 352 TLTCSDPGIYVLRFDNTYSFIHA 374


>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium,
           SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo
           sapiens}
          Length = 214

 Score = 26.5 bits (59), Expect = 3.7
 Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 118 EIIYRQVKSQFDTHQFVTLVEGTYVVCFSNE-FSTYSSALEVI 159
           E I   +K  F   +    ++  Y+V  S +    ++ A++ +
Sbjct: 170 ETIVSAIKENFQFKKDGHCLKEIYLVDVSEKTVEAFAEAVKTV 212


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 25.5 bits (55), Expect = 8.7
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 19/81 (23%)

Query: 63  LHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYR 122
           L +IV  +EL+       +                F V+    ++  ++IE P  EI++ 
Sbjct: 144 LIRIVSGLELSDTKQKGKK----------------FLVIAYEPFEN-IAIELPPNEILFS 186

Query: 123 QVKSQFDTHQFVTLVEG--TY 141
           +     + +  V  +    T+
Sbjct: 187 ENNDMDNNNDGVDELNKKCTF 207


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,557,786
Number of extensions: 142654
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 9
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.1 bits)