RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy189
         (171 letters)



>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF),
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 119

 Score = 32.2 bits (73), Expect = 0.010
 Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 8/88 (9%)

Query: 70  VELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEII-YRQVKSQF 128
           VE             F     +    +  +   G +            E++  ++  S  
Sbjct: 18  VEYEILFPGCVLRWQFMSDGADVGFGIFLKTKMGERQRAG-----EMTEVLPNQRYNSHL 72

Query: 129 D--THQFVTLVEGTYVVCFSNEFSTYSS 154
                       G YV+ F N +S   +
Sbjct: 73  VPEDGTLTCSDPGIYVLRFDNTYSFIHA 100


>d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis
           [TaxId: 1392]}
          Length = 297

 Score = 28.2 bits (62), Expect = 0.44
 Identities = 17/132 (12%), Positives = 42/132 (31%), Gaps = 12/132 (9%)

Query: 6   SLEGSAFAMFPRDQQTLPNHFYFTDYERHNSEIATFHLDRISMLLKKQWIGFFFLLILHQ 65
           S   + F ++    Q                 I   +++     +++  I    +   + 
Sbjct: 24  SYGATTFMIYTGAPQNT-----------RRKPIEELNIEAGRKHMEQNGIEEIIIHAPYI 72

Query: 66  IVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVK 125
           I        E      +    +I+R +++ +  Q+V      V    +A  ++II + + 
Sbjct: 73  INVGNTTKPETFQLGVDFLRMEIERTSALGVAKQIVLHPGAHVGAGADAGIQQII-KGLN 131

Query: 126 SQFDTHQFVTLV 137
                 Q V + 
Sbjct: 132 EVLTPDQTVNIA 143


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0508    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 615,519
Number of extensions: 26506
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 7
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.6 bits)