BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1890
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain In Complex With Partially Bound Dmso
Length = 201
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/198 (42%), Positives = 111/198 (56%), Gaps = 3/198 (1%)
Query: 21 PAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNG 80
P ++W DG+I + I NF+ ++ +A+ + +CV F RT ++ YIV+ P G
Sbjct: 6 PERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERT-DEDSYIVFTYRPCG 64
Query: 81 KSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIK 140
C S VG G +++GKNC G V HE H +GFWHE RPDRDR V I E I+
Sbjct: 65 --CCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQ 122
Query: 141 KGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQR 200
G E NF K +E +L YDF SIMHY+R FSR TI PK +N +GQR
Sbjct: 123 PGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQR 182
Query: 201 INISKMDIAKLNTLYKCP 218
+SK DIA+ LYKCP
Sbjct: 183 TRLSKGDIAQARKLYKCP 200
>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain
Length = 202
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/198 (42%), Positives = 111/198 (56%), Gaps = 3/198 (1%)
Query: 21 PAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNG 80
P ++W DG+I + I NF+ ++ +A+ + +CV F RT ++ YIV+ P G
Sbjct: 7 PERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERT-DEDSYIVFTYRPCG 65
Query: 81 KSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIK 140
C S VG G +++GKNC G V HE H +GFWHE RPDRDR V I E I+
Sbjct: 66 --CCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQ 123
Query: 141 KGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQR 200
G E NF K +E +L YDF SIMHY+R FSR TI PK +N +GQR
Sbjct: 124 PGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQR 183
Query: 201 INISKMDIAKLNTLYKCP 218
+SK DIA+ LYKCP
Sbjct: 184 TRLSKGDIAQARKLYKCP 201
>pdb|3EDI|A Chain A, Crystal Structure Of Tolloid-Like Protease 1 (Tll-1)
Protease Domain
Length = 201
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 106/196 (54%), Gaps = 3/196 (1%)
Query: 23 KLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNGKS 82
++W G+I Y I NF+ ++ +A+ + +CV F R+ ++ YIV+ P G
Sbjct: 8 RIWPGGVIPYVIGGNFTGSQRAMFKQAMRHWEKHTCVTFIERSDEES-YIVFTYRPCG-- 64
Query: 83 CSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKG 142
C S VG G +++GKNC G V HE H +GFWHE RPDRD V I E I+ G
Sbjct: 65 CCSYVGRRGNGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRDNHVTIIRENIQPG 124
Query: 143 SEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQRIN 202
E NF K E +L YDF SIMHY+R FSR TI P + N +GQR
Sbjct: 125 QEYNFLKMEPGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILPSRDDNGIRPAIGQRTR 184
Query: 203 ISKMDIAKLNTLYKCP 218
+SK DIA+ LY+CP
Sbjct: 185 LSKGDIAQARKLYRCP 200
>pdb|4GWM|A Chain A, Crystal Structure Of Human Promeprin Beta
pdb|4GWM|B Chain B, Crystal Structure Of Human Promeprin Beta
Length = 592
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 109/189 (57%), Gaps = 9/189 (4%)
Query: 30 IYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYI-VYKESPNGKSCSSNVG 88
I Y ++ + ++ K I+ A +C+ F+ +T YI V+K G C S+VG
Sbjct: 53 IPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPWA-GETNYISVFK----GSGCWSSVG 107
Query: 89 FTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKGSEINFK 148
+++G NC + TVQHE LHALGFWHEQ+R DRD +V I ++ I G E NF
Sbjct: 108 NRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFN 167
Query: 149 KRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQRINISKMDI 208
+ + +L++PYD+ S+MHYS+ AF ++ PTI + ++ D +GQR++ S D+
Sbjct: 168 TYSDDISDSLNVPYDYTSVMHYSKTAF-QNGTEPTIVTR--ISDFEDVIGQRMDFSDSDL 224
Query: 209 AKLNTLYKC 217
KLN LY C
Sbjct: 225 LKLNQLYNC 233
>pdb|4GWN|A Chain A, Crystal Structure Of Human Mature Meprin Beta
Length = 553
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 109/189 (57%), Gaps = 9/189 (4%)
Query: 30 IYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYI-VYKESPNGKSCSSNVG 88
I Y ++ + ++ K I+ A +C+ F+ +T YI V+K G C S+VG
Sbjct: 14 IPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPWA-GETNYISVFK----GSGCWSSVG 68
Query: 89 FTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKGSEINFK 148
+++G NC + TVQHE LHALGFWHEQ+R DRD +V I ++ I G E NF
Sbjct: 69 NRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFN 128
Query: 149 KRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQRINISKMDI 208
+ + +L++PYD+ S+MHYS+ AF ++ PTI + ++ D +GQR++ S D+
Sbjct: 129 TYSDDISDSLNVPYDYTSVMHYSKTAF-QNGTEPTIVTR--ISDFEDVIGQRMDFSDSDL 185
Query: 209 AKLNTLYKC 217
KLN LY C
Sbjct: 186 LKLNQLYNC 194
>pdb|3LQB|A Chain A, Crystal Structure Of The Hatching Enzyme Zhe1 From The
Zebrafish Danio Rerio
Length = 199
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 104/187 (55%), Gaps = 12/187 (6%)
Query: 32 YEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNGKSCSSNVGFTG 91
Y + FS++ K I A++ +C+RF R+ Q Y+ + N C S +G TG
Sbjct: 24 YVVSGEFSINDKSVIANAISIFHAQTCIRFVPRSI-QADYLSIE---NKDGCYSAIGRTG 79
Query: 92 -KKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKGSEINFKKR 150
K+V +N K C G QHE HALGF+HEQ+R DRD++V I++ I G NF K+
Sbjct: 80 GKQVVSLNR-KGCVYSGIAQHELNHALGFYHEQSRSDRDQYVRINWNNISPGMAYNFLKQ 138
Query: 151 NFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQRINISKMDIAK 210
T PYD+GS+MHY + AF+ TITP NVQ +GQR +SK+DI +
Sbjct: 139 KTNNQNT---PYDYGSLMHYGKTAFAIQPGLETITPIPDENVQ---IGQRQGLSKIDILR 192
Query: 211 LNTLYKC 217
+N LY C
Sbjct: 193 INKLYGC 199
>pdb|1AST|A Chain A, Structure Of Astacin And Implications For Activation Of
Astacins And Zinc-Ligation Of Collagenases
pdb|1IAA|A Chain A, Crystal Structures, Spectroscopic Features, And Catalytic
Properties Of Cobalt(Ii), Copper(Ii), Nickel(Ii), And
Mercury(Ii) Derivatives Of The Zinc Endopeptidase
Astacin. A Correlation Of Structure And Proteolytic
Activity
pdb|1IAB|A Chain A, Crystal Structures, Spectroscopic Features, And Catalytic
Properties Of Cobalt(Ii), Copper(Ii), Nickel(Ii), And
Mercury(Ii) Derivatives Of The Zinc Endopeptidase
Astacin. A Correlation Of Structure And Proteolytic
Activity
pdb|1IAC|A Chain A, Refined 1.8 Angstroms X-Ray Crystal Structure Of Astacin,
A Zinc-Endopeptidase From The Crayfish Astacus Astacus
L. Structure Determination, Refinement, Molecular
Structure And Comparison With Thermolysin
pdb|1IAD|A Chain A, Refined 1.8 Angstroms X-Ray Crystal Structure Of Astacin,
A Zinc-Endopeptidase From The Crayfish Astacus Astacus
L. Structure Determination, Refinement, Molecular
Structure And Comparison To Thermolysin
pdb|1IAE|A Chain A, Crystal Structures, Spectroscopic Features, And Catalytic
Properties Of Cobalt(Ii), Copper(Ii), Nickel(Ii), And
Mercury(Ii) Derivatives Of The Zinc Endopeptidase
Astacin. A Correlation Of Structure And Proteolytic
Activity
pdb|1QJI|A Chain A, Structure Of Astacin With A Transition-State Analogue
Inhibitor
pdb|1QJJ|A Chain A, Structure Of Astacin With A Hydroxamic Acid Inhibitor
Length = 200
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 12/195 (6%)
Query: 24 LWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNGKSC 83
LW G+I Y D+ I+ + + +C+RF RT ++ Y+ + +G C
Sbjct: 9 LWSGGVIPYTFAGVSGADQSA-ILSGMQELEEKTCIRFVPRT-TESDYV--EIFTSGSGC 64
Query: 84 SSNVG-FTGKKVSYVNLGKN-CFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKK 141
S VG +G + V+L N C GT+ HE +HA+GF+HE R DRD +V I+Y+ +
Sbjct: 65 WSYVGRISGAQQ--VSLQANGCVYHGTIIHELMHAIGFYHEHTRMDRDNYVTINYQNVDP 122
Query: 142 GSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFS-RDSKSPTITPKKTLNVQADKMGQR 200
NF + D Y + SIMHY +++FS + TI P + + +
Sbjct: 123 SMTSNFDIDTYSRYVGED--YQYYSIMHYGKYSFSIQWGVLETIVPLQN-GIDLTDPYDK 179
Query: 201 INISKMDIAKLNTLY 215
++ + D ++N LY
Sbjct: 180 AHMLQTDANQINNLY 194
>pdb|3LQ0|A Chain A, Zymogen Structure Of Crayfish Astacin Metallopeptidase
Length = 235
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 93/195 (47%), Gaps = 12/195 (6%)
Query: 24 LWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNGKSC 83
LW G+I Y D+ I+ + + +C+RF RT ++ Y+ S G C
Sbjct: 43 LWSGGVIPYTFAGVSGADQSA-ILSGMQELEEKTCIRFVPRT-TESDYVEIFTS--GSGC 98
Query: 84 SSNVG-FTGKKVSYVNLGKN-CFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKK 141
S VG +G + V+L N C GT+ H +HA+GF+HE R DRD +V I+Y+ +
Sbjct: 99 WSYVGRISGAQQ--VSLQANGCVYHGTILHALMHAIGFYHEHTRMDRDNYVTINYQNVDP 156
Query: 142 GSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFS-RDSKSPTITPKKTLNVQADKMGQR 200
NF + D Y + SIMHY +++FS + TI P + + +
Sbjct: 157 SMTSNFDIDTYSRYVGED--YQYYSIMHYGKYSFSIQWGVLETIVPLQN-GIDLTDPYDK 213
Query: 201 INISKMDIAKLNTLY 215
++ + D ++N LY
Sbjct: 214 AHMLQTDANQINNLY 228
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 61 FRRRTHNQTPYIVYKESPNGKSCSSNVG 88
+T TPY++YK+S N KS N+G
Sbjct: 394 IESQTETGTPYMLYKDSCNRKSNQQNLG 421
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 61 FRRRTHNQTPYIVYKESPNGKSCSSNVG 88
+T TPY++YK+S N KS N+G
Sbjct: 321 IESQTETGTPYMLYKDSCNRKSNQQNLG 348
>pdb|1WZC|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Mannosyl-3-
Phosphoglycerate Phosphatase Complexed With Mg2+ And
Phosphate
pdb|1WZC|B Chain B, Crystal Structure Of Pyrococcus Horikoshii Mannosyl-3-
Phosphoglycerate Phosphatase Complexed With Mg2+ And
Phosphate
Length = 249
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 118 GFWHEQARPDRDRFVDIHYELIKKGSEINFKKRNFKEATTLDLPY--DFGSIMHYSRFAF 175
G+ + A+P + D+ +E+I S+ ++ +++ ++ P+ + GS + + F
Sbjct: 16 GYEPDPAKPIIEELKDMGFEIIFNSSKTRAEQEYYRKELEVETPFISENGSAIFIPKGYF 75
Query: 176 SRDSKSPTITPKKTLNVQADKMGQRINISKMDIAKLNTLYKCPNKYYKGRDVRHVKAVQS 235
D K K+ N ++G R+ + ++ KL +Y KYY ++
Sbjct: 76 PFDVKG-----KEVGNYIVIELGIRVEKIREELKKLENIYGL--KYYGNSTKEEIEKFTG 128
Query: 236 RP 237
P
Sbjct: 129 MP 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,375,408
Number of Sequences: 62578
Number of extensions: 302918
Number of successful extensions: 586
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 16
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)