RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1890
(242 letters)
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative
splicing, calcium, chondrogenesis, cleavage on PAIR of
basic residues, cytokine; 1.25A {Homo sapiens} PDB:
3edg_A 3edi_A
Length = 201
Score = 249 bits (638), Expect = 1e-84
Identities = 85/198 (42%), Positives = 111/198 (56%), Gaps = 3/198 (1%)
Query: 21 PAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNG 80
P ++W DG+I + I NF+ ++ +A+ + +CV F RT ++ YIV+ P G
Sbjct: 6 PERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERT-DEDSYIVFTYRPCG 64
Query: 81 KSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIK 140
C S VG G +++GKNC G V HE H +GFWHE RPDRDR V I E I+
Sbjct: 65 --CCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQ 122
Query: 141 KGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQR 200
G E NF K +E +L YDF SIMHY+R FSR TI PK +N +GQR
Sbjct: 123 PGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQR 182
Query: 201 INISKMDIAKLNTLYKCP 218
+SK DIA+ LYKCP
Sbjct: 183 TRLSKGDIAQARKLYKCP 200
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease,
astacin, metal- protease; 1.10A {Danio rerio}
Length = 199
Score = 218 bits (557), Expect = 2e-72
Identities = 74/203 (36%), Positives = 108/203 (53%), Gaps = 17/203 (8%)
Query: 21 PAKLWKDGL-----IYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYK 75
+ WK + Y + FS++ K I A++ +C+RF R+ Q Y+ +
Sbjct: 8 KSCFWKKNANNIVEVPYVVSGEFSINDKSVIANAISIFHAQTCIRFVPRS-IQADYLSIE 66
Query: 76 ESPNGKSCSSNVGFTGKKVSYVNLGKN-CFVMGTVQHETLHALGFWHEQARPDRDRFVDI 134
N C S +G TG K V+L + C G QHE HALGF+HEQ+R DRD++V I
Sbjct: 67 ---NKDGCYSAIGRTGGK-QVVSLNRKGCVYSGIAQHELNHALGFYHEQSRSDRDQYVRI 122
Query: 135 HYELIKKGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQA 194
++ I G NF K+ + + PYD+GS+MHY + AF+ TITP NV
Sbjct: 123 NWNNISPGMAYNFLKQ---KTNNQNTPYDYGSLMHYGKTAFAIQPGLETITPIPDENV-- 177
Query: 195 DKMGQRINISKMDIAKLNTLYKC 217
++GQR +SK+DI ++N LY C
Sbjct: 178 -QIGQRQGLSKIDILRINKLYGC 199
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme,
protease, Z disulfide bond, hydrolase, metal-binding,
metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A
1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Length = 235
Score = 219 bits (560), Expect = 2e-72
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 10/215 (4%)
Query: 5 VDGFRDHDGVKNLAKTPAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRR 64
+ R V LW G+I Y S + I+ + + +C+RF R
Sbjct: 24 LRAGRQPARVGAAILGDEYLWSGGVIPYTFA-GVSGADQSAILSGMQELEEKTCIRFVPR 82
Query: 65 THNQTPYIVYKESPNGKSCSSNVGFTGKKVSYVNL-GKNCFVMGTVQHETLHALGFWHEQ 123
T ++ Y+ S +G C S VG V+L C GT+ H +HA+GF+HE
Sbjct: 83 T-TESDYVEIFTSGSG--CWSYVGRISGA-QQVSLQANGCVYHGTILHALMHAIGFYHEH 138
Query: 124 ARPDRDRFVDIHYELIKKGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRD-SKSP 182
R DRD +V I+Y+ + NF + + Y + SIMHY +++FS
Sbjct: 139 TRMDRDNYVTINYQNVDPSMTSNFDIDT--YSRYVGEDYQYYSIMHYGKYSFSIQWGVLE 196
Query: 183 TITPKKTLNVQADKMGQRINISKMDIAKLNTLYKC 217
TI P + + + ++ + D ++N LY
Sbjct: 197 TIVPLQN-GIDLTDPYDKAHMLQTDANQINNLYTN 230
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.007
Identities = 39/302 (12%), Positives = 85/302 (28%), Gaps = 96/302 (31%)
Query: 14 VKNLAKTPAKLWKDGLIYYEI-DKNFSVDRKRFIVKALN-----------------NIMT 55
+ ++ + + +++ + K + ++F+ + L ++MT
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 56 FSCVRFRRRTHNQ----TPYIVYKESP------------------------NGKSC---- 83
+ R R +N Y V + P +GK+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 84 -SSNVGFTGK---KVSYVNLGKNCFVMGTV--QHETLHALGFWHEQARPDRDRFVDIHYE 137
+ K K+ ++NL NC TV + L + +R D + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLK-NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 138 LIKKGSEINFKKRNFKEA------------------------TTLDLP-YDFGSIMHYSR 172
I+ K + ++ TT DF S +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 173 FAFSRDSKSPTITPKKTLNVQADKMGQRIN--------ISKMDIAKLNTLYK---CPNKY 221
S D S T+TP + ++ + R + ++ + +
Sbjct: 289 --ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 222 YK 223
+K
Sbjct: 347 WK 348
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A
{Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB:
1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
Length = 479
Score = 31.4 bits (70), Expect = 0.27
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 18/102 (17%)
Query: 38 FSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIV------------------YKESPN 79
F+ ++ +L + + + F T N++ I Y P
Sbjct: 97 FNAEQIEQAKLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPG 156
Query: 80 GKSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWH 121
+ + + + + N G + T HE HALG H
Sbjct: 157 NYQGAGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAH 198
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.52
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 23/101 (22%)
Query: 74 YKESPNGKS--------CSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQAR 125
YK S + GF+ + N T+H F E+ +
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVN----------LTIH---FGGEKGK 1682
Query: 126 PDRDRFVDIHYELIKKGSEINFKKRNFKEATTLDLPYDFGS 166
R+ + + +E I G ++ FKE Y F S
Sbjct: 1683 RIRENYSAMIFETIVDGKLKT--EKIFKEINEHSTSYTFRS 1721
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 1.3
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 120 WHEQARPDRDRFVDIHYELIKKGSEINFKKRNFKEA 155
W E+A+ D + + E ++K N R +A
Sbjct: 112 WREKAKKDLEEWNQRQSEQVEKNKINN---RIADKA 144
>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania
major} SCOP: d.92.1.3
Length = 478
Score = 28.9 bits (63), Expect = 1.8
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 95 SYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRD 129
+ + + V V HE HALGF R
Sbjct: 149 ANIASRYDQLVTRVVTHEMAHALGFSGPFFEDARI 183
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j
3u5e_f 3u5i_f
Length = 107
Score = 27.1 bits (60), Expect = 2.6
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 61 FRRRTHNQTPYIVYKESPNGKSCSSNVGFTGKKVSYVNLGKN 102
++R P + + + + GK+++YV
Sbjct: 16 YQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASK 57
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices,
hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
g.14.1.2 g.14.1.2 g.14.1.2
Length = 425
Score = 27.5 bits (60), Expect = 4.7
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 83 CSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWH 121
C++ F K + + HE HALG H
Sbjct: 354 CATTSNFDSDKKWGFCPDQGYSLFLVAAHEFGHALGLDH 392
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP:
b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A
1om8_A 1omj_A 1h71_P
Length = 463
Score = 27.1 bits (59), Expect = 5.2
Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 15/99 (15%)
Query: 38 FSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIV--------------YKESPNGKSC 83
FS +K +L + + V F + + PN
Sbjct: 81 FSALQKEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFANFSASNGGAAFAYLPNSSRK 140
Query: 84 SSNVGFTGKKVS-YVNLGKNCFVMGTVQHETLHALGFWH 121
+ K G+ + T+ HE H LG H
Sbjct: 141 GESWYLINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSH 179
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase;
HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A*
1ogy_A* 2nya_A*
Length = 802
Score = 27.0 bits (60), Expect = 6.6
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 15/70 (21%)
Query: 87 VGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKGSEIN 146
V G + VN G NC V G + ++ DR + L++ +
Sbjct: 38 VATQGDPQAEVNKGLNC-VKGYFLSKIMYG---------QDR-----LTRPLMRMKNGKY 82
Query: 147 FKKRNFKEAT 156
K +F T
Sbjct: 83 DKNGDFAPVT 92
>3iz5_J 60S ribosomal protein L12 (L11P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_J
Length = 166
Score = 25.6 bits (56), Expect = 7.5
Identities = 2/42 (4%), Positives = 7/42 (16%)
Query: 61 FRRRTHNQTPYIVYKESPNGKSCSSNVGFTGKKVSYVNLGKN 102
+ + + K ++ K
Sbjct: 20 GEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTV 61
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor
complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Length = 167
Score = 26.2 bits (57), Expect = 7.9
Identities = 8/59 (13%), Positives = 17/59 (28%)
Query: 63 RRTHNQTPYIVYKESPNGKSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWH 121
+ ++ G + F ++ + G + H HA+G H
Sbjct: 72 GYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGKGVGYSLFLVAAHAFGHAMGLEH 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.410
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,675,391
Number of extensions: 208750
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 21
Length of query: 242
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,160,982
Effective search space: 628308282
Effective search space used: 628308282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)