RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1890
(242 letters)
>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish
(Astacus astacus) [TaxId: 6715]}
Length = 200
Score = 160 bits (406), Expect = 4e-50
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 8/198 (4%)
Query: 21 PAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNG 80
LW G+I Y D+ I+ + + +C+RF RT ++ +G
Sbjct: 6 DEYLWSGGVIPYTFAGVSGADQSA-ILSGMQELEEKTCIRFVPRTTESDYVEIFT---SG 61
Query: 81 KSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIK 140
C S VG C GT+ HE +HA+GF+HE R DRD +V I+Y+ +
Sbjct: 62 SGCWSYVGRISGAQQVSLQANGCVYHGTIIHELMHAIGFYHEHTRMDRDNYVTINYQNVD 121
Query: 141 KGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKS-PTITPKKTLNVQADKMGQ 199
NF + + Y + SIMHY +++FS TI P + +
Sbjct: 122 PSMTSNFDIDTYSR--YVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQN-GIDLTDPYD 178
Query: 200 RINISKMDIAKLNTLYKC 217
+ ++ + D ++N LY
Sbjct: 179 KAHMLQTDANQINNLYTN 196
>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase
(CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 34.2 bits (77), Expect = 0.006
Identities = 24/196 (12%), Positives = 41/196 (20%), Gaps = 36/196 (18%)
Query: 25 WKDGLIYYEIDKNFSVDR-----KRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPN 79
W+ I + I N++ I KA + + +RFR + K++
Sbjct: 6 WQHNEITFCIQ-NYTPKVGEYATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADI 64
Query: 80 GKSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELI 139
+ + G D + E +
Sbjct: 65 MIFFAEG---------FHGDSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTVRNEDL 115
Query: 140 KKGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQ 199
A L+ D +IM T L
Sbjct: 116 NGNDIFLVAVHELGHALGLEHSSDPSAIMAPFY--------QWMDTENFVL--------- 158
Query: 200 RINISKMDIAKLNTLY 215
D + LY
Sbjct: 159 ----PDDDRRGIQQLY 170
>d1lsha3 f.7.1.1 (A:621-1073) Lipovitellin-phosvitin complex;
beta-sheet shell regions {Lamprey (Ichthyomyzon
unicuspis) [TaxId: 30308]}
Length = 452
Score = 29.7 bits (66), Expect = 0.36
Identities = 14/81 (17%), Positives = 21/81 (25%), Gaps = 3/81 (3%)
Query: 132 VDIHYELIKKGS-EINFKKRNFK-EATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKT 189
L G E+N ++ NFK + F RD I P
Sbjct: 267 YKTSAGLGVNGKIEMNARESNFKASLKPFQQKTVV-VLSTMESIVFVRDPSGSRILPVLP 325
Query: 190 LNVQADKMGQRINISKMDIAK 210
+ DK + +
Sbjct: 326 PKMTLDKGLISQQQQQPHHQQ 346
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens),
fibroblast [TaxId: 9606]}
Length = 168
Score = 28.7 bits (63), Expect = 0.45
Identities = 15/125 (12%), Positives = 27/125 (21%), Gaps = 23/125 (18%)
Query: 25 WKDGLIYYEIDKNFSV----DRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNG 80
W+ + Y I + KAL + + F R + ++
Sbjct: 10 WRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREH 69
Query: 81 KSCSSNVGFTG-------------------KKVSYVNLGKNCFVMGTVQHETLHALGFWH 121
G + + HE H+LG +H
Sbjct: 70 GDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFH 129
Query: 122 EQARP 126
Sbjct: 130 SANTE 134
>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId:
9606]}
Length = 161
Score = 28.0 bits (61), Expect = 0.80
Identities = 11/91 (12%), Positives = 21/91 (23%), Gaps = 3/91 (3%)
Query: 81 KSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIK 140
+++ + + + G + H G D
Sbjct: 49 HDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGG---DSHFDDDELWSLGKGV 105
Query: 141 KGSEINFKKRNFKEATTLDLPYDFGSIMHYS 171
S F A L+ D G++M
Sbjct: 106 GYSLFLVAAHEFGHAMGLEHSQDPGALMAPI 136
>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi
[TaxId: 556]}
Length = 241
Score = 26.7 bits (58), Expect = 2.5
Identities = 19/126 (15%), Positives = 33/126 (26%), Gaps = 21/126 (16%)
Query: 31 YYEIDKNFSVDR---KRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNGKSCSSNV 87
D F +L + + + F T N++ I + S + +
Sbjct: 70 IPSGDTGFVKFNAEQIEQAKLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY 129
Query: 88 GFTG------------------KKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRD 129
G + + N G + T HE HALG H +
Sbjct: 130 GTQAYAYYPGNYQGAGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEYNAGE 189
Query: 130 RFVDIH 135
+
Sbjct: 190 GDPSYN 195
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 26.8 bits (59), Expect = 3.2
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 4 GVDGFRDHDGVKNLAKTPAKLWKD 27
VDG+R D + L P K D
Sbjct: 221 DVDGYR-IDHIDGLYD-PEKYIND 242
>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 246
Score = 25.6 bits (55), Expect = 4.9
Identities = 11/78 (14%), Positives = 19/78 (24%)
Query: 59 VRFRRRTHNQTPYIVYKESPNGKSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALG 118
+ + + P+ S + VN + T+ HE H LG
Sbjct: 124 FGNFSSSVGGAAFAFLPDVPDALKGQSWYLINSSYSANVNPANGNYGRQTLTHEIGHTLG 183
Query: 119 FWHEQARPDRDRFVDIHY 136
H +
Sbjct: 184 LSHPGDYNAGEGDPTYAD 201
>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii
18 [TaxId: 306]}
Length = 242
Score = 25.6 bits (55), Expect = 6.3
Identities = 26/143 (18%), Positives = 43/143 (30%), Gaps = 17/143 (11%)
Query: 10 DHDGVKNLAKTPAKLWKDGLIYYEIDK--NFSVDRKRFIVKALNNIMTFSCVRFRRRTHN 67
++DGV NL T G + FS +K +L + + V F
Sbjct: 49 NNDGVINLTYTFLTAPPVGYASRGLGTFSQFSALQKEQAKLSLESWADVAKVTFTEGPAA 108
Query: 68 QTPYIV-----YKESPNGKSCSSNVGFTGKKVSYVNLGKNCFVMG----------TVQHE 112
+ + S G + + + K S+ + K+ V T+ HE
Sbjct: 109 RGDDGHMTFANFSASNGGAAFAYLPNSSRKGESWYLINKDYQVNKTPGEGNYGRQTLTHE 168
Query: 113 TLHALGFWHEQARPDRDRFVDIH 135
H LG H +
Sbjct: 169 IGHTLGLSHPGDYNAGNGNPTYR 191
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.410
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 919,753
Number of extensions: 41862
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 15
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)