BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1891
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V6A|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 474
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 40 VGRSIPDDYLDKINAELESDVMIRAIYDVKGIQM 73
+GR +PD K+NAE D IR Y +G+Q+
Sbjct: 373 LGRKLPDFLTAKLNAEKLKDFKIRLQYFARGLQV 406
>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 507
Score = 29.6 bits (65), Expect = 0.79, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 40 VGRSIPDDYLDKINAELESDVMIRAIYDVKGIQM 73
+GR +PD K+NAE D IR Y +G+Q+
Sbjct: 356 LGRKLPDFLTAKLNAEKLKDFKIRLQYFARGLQV 389
>pdb|4DNT|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, Mutant
Length = 1054
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 72 QMGNSLIRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDM 131
Q G SL K+ +D +E S ++ + M+ ++T+D+ +LK SEN V +
Sbjct: 205 QYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASGYLQTLDDFNHIVLKASENGVPV 264
Query: 132 VGGEIDRIEM 141
++ ++++
Sbjct: 265 YLRDVAKVQI 274
>pdb|4DNR|A Chain A, Crystal Structure Of The Cusba Heavy-metal Efflux Complex
From Escherichia Coli, E716f Mutant
Length = 1054
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 72 QMGNSLIRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDM 131
Q G SL K+ +D +E S ++ + M+ ++T+D+ +LK SEN V +
Sbjct: 205 QYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASGYLQTLDDFNHIVLKASENGVPV 264
Query: 132 VGGEIDRIEM 141
++ ++++
Sbjct: 265 YLRDVAKVQI 274
>pdb|3K07|A Chain A, Crystal Structure Of Cusa
pdb|3KSO|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3KSS|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3K0I|A Chain A, Crystal Structure Of Cu(I)cusa
Length = 1055
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 72 QMGNSLIRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDM 131
Q G SL K+ +D +E S ++ + M+ ++T+D+ +LK SEN V +
Sbjct: 206 QYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASGYLQTLDDFNHIVLKASENGVPV 265
Query: 132 VGGEIDRIEM 141
++ ++++
Sbjct: 266 YLRDVAKVQI 275
>pdb|4DOP|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, R Mutant
Length = 1054
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 72 QMGNSLIRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDM 131
Q G SL K+ +D +E S ++ + M+ ++T+D+ +LK SEN V +
Sbjct: 205 QYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASGYLQTLDDFNHIVLKASENGVPV 264
Query: 132 VGGEIDRIEM 141
++ ++++
Sbjct: 265 YLRDVAKVQI 274
>pdb|3T51|A Chain A, Crystal Structures Of The Pre-Extrusion And Extrusion
States Of The Cusba Adaptor-Transporter Complex
pdb|3T53|A Chain A, Crystal Structures Of The Extrusion State Of The Cusba
Adaptor- Transporter Complex
pdb|3T56|A Chain A, Crystal Structure Of The Pre-Extrusion State Of The Cusba
Adaptor- Transporter Complex
Length = 1054
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 72 QMGNSLIRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDM 131
Q G SL K+ +D +E S ++ + M+ ++T+D+ +LK SEN V +
Sbjct: 205 QYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASGYLQTLDDFNHIVLKASENGVPV 264
Query: 132 VGGEIDRIEM 141
++ ++++
Sbjct: 265 YLRDVAKVQI 274
>pdb|3NE5|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli
Length = 1054
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 72 QMGNSLIRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDM 131
Q G SL K+ +D +E S ++ + M+ ++T+D+ +LK SEN V +
Sbjct: 205 QYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASGYLQTLDDFNHIVLKASENGVPV 264
Query: 132 VGGEIDRIEM 141
++ ++++
Sbjct: 265 YLRDVAKVQI 274
>pdb|3EEZ|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Silicibacter Pomeroyi
Length = 378
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 51 KINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQN 110
KI ++E D I I DV+ I+ ++ Y + ++ R +DL+ M E Q
Sbjct: 167 KIGGDVERD--IARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHVMFE--QP 222
Query: 111 MKTIDEMEAFLLKHSENI 128
+T+D++ A HS +
Sbjct: 223 GETLDDIAAIRPLHSAPV 240
>pdb|1KZL|A Chain A, Riboflavin Synthase From S.Pombe Bound To
Carboxyethyllumazine
Length = 208
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 78 IRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEID 137
I YK + DG LT +++D + M+ I ++ ++ +N+ D+V E+D
Sbjct: 134 IVYKGYIALDGTSLTITHVDDSTFSIMM--------ISYTQSKVIMAKKNVGDLVNVEVD 185
Query: 138 RI 139
+I
Sbjct: 186 QI 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,576,191
Number of Sequences: 62578
Number of extensions: 178883
Number of successful extensions: 564
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 13
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)