Query psy1891
Match_columns 158
No_of_seqs 161 out of 1375
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:54:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0053 MMT1 Predicted Co/Zn/C 99.9 3.4E-26 7.3E-31 190.1 14.3 117 4-158 172-290 (304)
2 PRK09509 fieF ferrous iron eff 99.9 1.4E-24 3.1E-29 179.4 14.4 115 6-158 172-287 (299)
3 TIGR01297 CDF cation diffusion 99.9 6.1E-23 1.3E-27 166.0 12.7 113 8-157 153-267 (268)
4 PRK03557 zinc transporter ZitB 99.9 8.8E-22 1.9E-26 163.9 13.5 113 4-157 177-291 (312)
5 PF01545 Cation_efflux: Cation 99.8 3.3E-20 7.1E-25 150.8 13.7 117 4-157 161-280 (284)
6 KOG2802|consensus 99.8 2.6E-19 5.6E-24 150.3 8.3 124 1-158 380-503 (503)
7 COG1230 CzcD Co/Zn/Cd efflux s 99.7 5E-16 1.1E-20 128.4 10.6 113 4-157 179-291 (296)
8 KOG1485|consensus 99.5 1.4E-13 3.1E-18 117.4 9.8 107 7-152 285-392 (412)
9 KOG1483|consensus 99.1 1.2E-09 2.7E-14 92.7 12.7 85 3-87 252-339 (404)
10 KOG1482|consensus 99.0 2.2E-08 4.8E-13 84.8 14.0 112 3-155 249-361 (379)
11 KOG1484|consensus 98.7 3.3E-07 7.1E-12 76.9 11.6 86 4-90 231-319 (354)
12 COG3965 Predicted Co/Zn/Cd cat 93.1 0.13 2.9E-06 42.4 4.0 80 10-92 194-276 (314)
13 PF09580 Spore_YhcN_YlaJ: Spor 92.4 1.4 3.1E-05 33.4 8.7 68 43-155 71-138 (177)
14 TIGR01297 CDF cation diffusion 91.0 0.42 9.2E-06 38.3 4.7 37 7-43 52-88 (268)
15 PF14535 AMP-binding_C_2: AMP- 88.7 5.9 0.00013 27.1 10.4 41 50-91 7-47 (96)
16 COG0053 MMT1 Predicted Co/Zn/C 85.6 1.7 3.8E-05 36.3 5.1 36 7-42 75-110 (304)
17 PRK03557 zinc transporter ZitB 85.2 1.6 3.4E-05 36.4 4.6 37 7-43 81-117 (312)
18 PRK09509 fieF ferrous iron eff 83.1 2.4 5.1E-05 35.0 4.8 38 7-44 73-110 (299)
19 PF10934 DUF2634: Protein of u 78.8 15 0.00032 26.2 7.1 50 35-85 52-106 (112)
20 PF03780 Asp23: Asp23 family; 77.9 19 0.0004 24.7 7.3 48 44-92 7-74 (108)
21 PF01545 Cation_efflux: Cation 70.8 6.6 0.00014 31.5 4.0 36 7-42 61-96 (284)
22 PF04972 BON: BON domain; Int 65.7 3.7 7.9E-05 25.6 1.2 30 38-67 29-58 (64)
23 cd04870 ACT_PSP_1 CT domains f 63.5 37 0.00079 21.7 6.3 43 45-90 9-51 (75)
24 PF11654 DUF2665: Protein of u 62.0 8.8 0.00019 23.4 2.3 14 10-23 5-18 (47)
25 COG3105 Uncharacterized protei 60.3 10 0.00022 28.1 2.9 30 9-38 6-35 (138)
26 COG5547 Small integral membran 56.3 18 0.00038 23.1 3.1 23 7-29 7-29 (62)
27 TIGR00439 ftsX putative protei 54.7 81 0.0017 26.3 7.8 53 14-67 34-99 (309)
28 TIGR02898 spore_YhcN_YlaJ spor 54.6 93 0.002 23.6 8.7 66 47-155 54-119 (158)
29 cd00643 HMG-CoA_reductase_clas 52.9 1.5E+02 0.0032 26.1 9.2 42 48-90 150-191 (403)
30 PF00368 HMG-CoA_red: Hydroxym 52.3 1.3E+02 0.0029 26.0 8.8 71 48-156 124-194 (373)
31 PF06295 DUF1043: Protein of u 51.7 16 0.00034 26.7 2.7 23 14-36 2-24 (128)
32 PRK11677 hypothetical protein; 51.2 19 0.00041 26.7 3.1 27 10-36 2-28 (134)
33 KOG1485|consensus 48.4 25 0.00055 30.9 3.8 34 8-41 178-211 (412)
34 PRK11026 ftsX cell division AB 48.1 1.2E+02 0.0026 25.3 7.8 53 14-67 34-99 (309)
35 PRK10614 multidrug efflux syst 47.2 1.8E+02 0.0039 28.4 9.8 82 7-89 4-100 (1025)
36 PRK00523 hypothetical protein; 46.4 34 0.00073 22.8 3.3 47 8-58 5-51 (72)
37 PRK14740 kdbF potassium-transp 45.7 47 0.001 18.1 3.2 25 10-34 2-26 (29)
38 PRK12704 phosphodiesterase; Pr 44.9 43 0.00093 30.2 4.9 65 49-155 445-509 (520)
39 PRK10597 DNA damage-inducible 42.4 43 0.00094 22.7 3.5 23 134-156 20-43 (81)
40 PRK01844 hypothetical protein; 42.4 42 0.0009 22.3 3.3 44 11-58 7-50 (72)
41 PRK11023 outer membrane lipopr 42.1 20 0.00044 27.8 2.1 30 38-67 80-109 (191)
42 TIGR03319 YmdA_YtgF conserved 39.6 94 0.002 28.0 6.2 65 49-155 439-503 (514)
43 PF05371 Phage_Coat_Gp8: Phage 39.6 88 0.0019 19.4 4.2 26 12-37 25-50 (52)
44 PRK02047 hypothetical protein; 39.6 1.2E+02 0.0026 20.6 7.1 46 40-86 22-68 (91)
45 PRK10568 periplasmic protein; 39.2 25 0.00053 27.6 2.2 32 36-67 88-119 (203)
46 PF03672 UPF0154: Uncharacteri 38.7 78 0.0017 20.5 4.1 40 15-58 4-43 (64)
47 PRK00106 hypothetical protein; 38.6 53 0.0011 29.9 4.5 64 49-154 460-523 (535)
48 PF06183 DinI: DinI-like famil 36.3 79 0.0017 20.3 3.9 18 134-151 8-25 (65)
49 PRK00907 hypothetical protein; 36.1 1.5E+02 0.0031 20.5 7.2 46 40-86 23-69 (92)
50 COG2177 FtsX Cell division pro 34.4 2E+02 0.0043 24.1 7.0 27 40-66 65-91 (297)
51 PF13490 zf-HC2: Putative zinc 33.2 53 0.0012 17.9 2.4 29 32-60 4-32 (36)
52 PF00558 Vpu: Vpu protein; In 33.1 1E+02 0.0022 21.0 4.1 41 14-54 8-48 (81)
53 smart00344 HTH_ASNC helix_turn 33.0 92 0.002 21.0 4.2 33 46-82 74-106 (108)
54 cd04877 ACT_TyrR N-terminal AC 32.9 74 0.0016 20.2 3.4 27 44-70 46-72 (74)
55 COG1230 CzcD Co/Zn/Cd efflux s 32.4 1.2E+02 0.0025 25.5 5.3 38 6-43 83-120 (296)
56 PRK14475 F0F1 ATP synthase sub 32.3 76 0.0017 23.8 3.9 37 6-42 2-41 (167)
57 PF13740 ACT_6: ACT domain; PD 31.9 1.4E+02 0.003 19.1 6.6 41 45-88 12-52 (76)
58 TIGR00920 2A060605 3-hydroxy-3 31.9 4.3E+02 0.0093 25.8 9.4 44 46-90 609-652 (886)
59 PF06738 DUF1212: Protein of u 31.0 32 0.0007 26.1 1.7 36 4-39 118-153 (193)
60 PF05105 Phage_holin_4: Holin 30.7 1.9E+02 0.0042 20.3 5.9 38 14-53 75-112 (118)
61 COG4956 Integral membrane prot 30.7 73 0.0016 27.2 3.8 120 6-148 104-228 (356)
62 cd02136 Nitroreductase Nitrore 30.4 83 0.0018 23.2 3.8 41 31-71 6-46 (178)
63 PRK11023 outer membrane lipopr 29.5 52 0.0011 25.5 2.6 32 37-69 156-187 (191)
64 PRK10557 hypothetical protein; 29.4 99 0.0021 24.0 4.2 28 6-33 6-33 (192)
65 COG3763 Uncharacterized protei 27.9 1.7E+02 0.0037 19.4 4.4 30 28-58 21-50 (71)
66 cd00534 DHNA_DHNTPE Dihydroneo 27.5 2.2E+02 0.0047 19.8 7.4 23 134-156 74-96 (118)
67 TIGR00526 folB_dom FolB domain 27.0 2.2E+02 0.0048 19.8 7.2 23 134-156 74-96 (118)
68 PF07315 DUF1462: Protein of u 26.8 85 0.0018 21.8 2.9 18 134-151 20-37 (93)
69 cd00365 HMG-CoA_reductase Hydr 26.7 4.3E+02 0.0093 23.0 9.1 42 48-90 128-174 (376)
70 PRK10568 periplasmic protein; 26.6 50 0.0011 25.8 2.1 31 37-67 168-198 (203)
71 TIGR01711 gspJ general secreti 26.6 1.2E+02 0.0027 23.3 4.3 30 8-37 2-31 (192)
72 PRK00341 hypothetical protein; 26.4 2.2E+02 0.0047 19.4 6.9 45 40-86 23-68 (91)
73 PRK09579 multidrug efflux prot 25.8 6.4E+02 0.014 24.7 10.6 71 13-84 10-95 (1017)
74 PF01883 DUF59: Domain of unkn 25.5 1.8E+02 0.0039 18.2 5.5 21 134-155 52-72 (72)
75 PF01037 AsnC_trans_reg: AsnC 25.2 1.7E+02 0.0037 17.9 7.3 34 47-86 10-43 (74)
76 PF12321 DUF3634: Protein of u 24.3 2.4E+02 0.0052 20.2 5.0 56 17-76 4-71 (108)
77 PF13131 DUF3951: Protein of u 24.2 1.1E+02 0.0023 19.0 2.7 20 15-34 10-29 (53)
78 cd02151 NADPH_oxidoreductase_2 23.8 95 0.0021 22.6 3.1 36 31-66 6-41 (162)
79 cd04869 ACT_GcvR_2 ACT domains 23.7 2E+02 0.0043 18.1 7.0 44 45-90 9-57 (81)
80 PF10389 CoatB: Bacteriophage 23.6 1.8E+02 0.0039 17.6 3.6 22 14-35 24-45 (46)
81 smart00749 BON bacterial OsmY 23.6 1.4E+02 0.003 17.3 3.4 32 37-68 28-59 (62)
82 cd02150 NADPH_oxidoreductase_1 23.4 1E+02 0.0022 22.6 3.2 38 32-69 6-43 (166)
83 KOG1484|consensus 23.3 1.4E+02 0.003 25.7 4.2 35 7-41 97-131 (354)
84 PF00403 HMA: Heavy-metal-asso 23.1 1E+02 0.0022 18.6 2.6 20 46-65 10-29 (62)
85 PF12669 P12: Virus attachment 23.0 1.2E+02 0.0025 19.1 2.9 23 15-37 3-26 (58)
86 TIGR00489 aEF-1_beta translati 23.0 2.6E+02 0.0055 19.1 7.2 20 136-156 64-83 (88)
87 PF04917 Shufflon_N: Bacterial 22.8 1.4E+02 0.003 25.7 4.2 35 8-42 7-41 (356)
88 PF06898 YqfD: Putative stage 22.5 1E+02 0.0022 26.6 3.3 21 136-156 145-165 (385)
89 PF10407 Cytokin_check_N: Cdc1 22.5 2E+02 0.0043 19.0 4.0 22 134-155 17-38 (73)
90 cd02062 Nitro_FMN_reductase Pr 22.0 95 0.0021 21.0 2.6 41 33-73 4-44 (122)
91 TIGR00525 folB dihydroneopteri 22.0 2.8E+02 0.0061 19.2 7.8 23 134-156 73-95 (116)
92 PF04865 Baseplate_J: Baseplat 21.8 3.9E+02 0.0084 20.8 7.0 34 49-85 121-155 (243)
93 TIGR00334 5S_RNA_mat_M5 ribonu 21.6 1E+02 0.0022 23.9 2.8 20 137-156 61-80 (174)
94 PRK11179 DNA-binding transcrip 21.4 3.3E+02 0.0072 19.8 7.1 33 46-82 80-112 (153)
95 PF02038 ATP1G1_PLM_MAT8: ATP1 21.1 1.6E+02 0.0035 18.1 3.1 19 14-32 15-33 (50)
96 cd02135 Arsenite_oxidase Nitro 20.9 1.3E+02 0.0029 21.5 3.3 33 32-64 6-38 (160)
97 PF09047 MEF2_binding: MEF2 bi 20.8 1E+02 0.0022 17.2 2.0 25 42-66 7-31 (35)
98 COG3945 Uncharacterized conser 20.5 1.2E+02 0.0026 23.8 3.1 43 25-69 20-62 (189)
99 PRK11589 gcvR glycine cleavage 20.4 4.1E+02 0.009 20.6 6.3 45 46-92 106-155 (190)
100 cd04910 ACT_AK-Ectoine_1 ACT d 20.1 1E+02 0.0022 20.2 2.3 18 134-151 51-68 (71)
101 PRK10555 aminoglycoside/multid 20.1 8.4E+02 0.018 24.0 10.7 60 14-73 9-83 (1037)
No 1
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.4e-26 Score=190.07 Aligned_cols=117 Identities=16% Similarity=0.276 Sum_probs=108.5
Q ss_pred eeecCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEE
Q psy1891 4 TLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAE 83 (158)
Q Consensus 4 ~~~~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~ 83 (158)
+.++||+|+||++|++||++|+++|++++|++.+.|||+++||+..++|++++.+.|||.++|++|+|+.|+. +++++|
T Consensus 172 ~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~~~~V~~v~~lr~R~~G~~-~~id~~ 250 (304)
T COG0053 172 GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVPGVKGVHDLRTRKSGSR-IFIDVH 250 (304)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHhcCCcceeeecceeeeeCCe-EEEEEE
Confidence 3467999999999999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred EEeCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhCCCee--EEEEeeC
Q psy1891 84 VDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIR--HVDLEVL 158 (158)
Q Consensus 84 v~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~i~~~iE~~I~~~~p~~~--~v~iE~~ 158 (158)
+++||+||+ .++|++++++|++|++.+|+.. .||+||.
T Consensus 251 i~v~~~ls~-------------------------------------~eah~I~~~ie~~i~~~~~~~~~v~IhveP~ 290 (304)
T COG0053 251 IEVDPDLSL-------------------------------------EEAHEIADEVEKRIKKEFPKVADVTIHVEPL 290 (304)
T ss_pred EEECCCCCh-------------------------------------HHHHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 999999987 3568999999999999999543 4788884
No 2
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=99.92 E-value=1.4e-24 Score=179.44 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=107.6
Q ss_pred ecCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEE
Q psy1891 6 YTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVD 85 (158)
Q Consensus 6 ~~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~ 85 (158)
++||+|+||++|++||+++++.|++++++|...|||+++|++..++|++.+++.|||.++|++|+|++|++ ..+++|+.
T Consensus 172 ~~g~~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~~~~~v~~v~~l~~~~~G~~-~~v~v~i~ 250 (299)
T PRK09509 172 WYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPT-RFIQLHLE 250 (299)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCcCceeeeeEeeCCe-EEEEEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999 58999999
Q ss_pred eCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhCCCeeE-EEEeeC
Q psy1891 86 FDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIRH-VDLEVL 158 (158)
Q Consensus 86 vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~i~~~iE~~I~~~~p~~~~-v~iE~~ 158 (158)
+|+++++ +++|++++++|++|+++||+.+. ||+||.
T Consensus 251 v~~~~~~-------------------------------------~e~h~i~~~ie~~l~~~~~~~~v~ihveP~ 287 (299)
T PRK09509 251 MEDNLPL-------------------------------------VQAHMIADQVEQALLRRFPGSDVIIHQDPC 287 (299)
T ss_pred ECCCCCH-------------------------------------HHHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 9999976 35679999999999999998764 899993
No 3
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=99.90 E-value=6.1e-23 Score=165.96 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=104.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeC
Q psy1891 8 GSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFD 87 (158)
Q Consensus 8 G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd 87 (158)
||+|+||++|+++++++++.|+++++++...|+|.+++++..++|++.+++.|||.++|++|+|++|++.+.+++|+++|
T Consensus 153 ~~~~~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~ 232 (268)
T TIGR01297 153 GWHWADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVD 232 (268)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999447899999999
Q ss_pred CCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhCCCeeE--EEEee
Q psy1891 88 GRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIRH--VDLEV 157 (158)
Q Consensus 88 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~i~~~iE~~I~~~~p~~~~--v~iE~ 157 (158)
+++|+ +++|++++++|+++++++|++.+ ||+||
T Consensus 233 ~~~~~-------------------------------------~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep 267 (268)
T TIGR01297 233 PDLDL-------------------------------------KQAHDIALEIEREILKRHPGIEHVTIQVEP 267 (268)
T ss_pred CCCCh-------------------------------------hHHHHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 99987 35689999999999999999865 67777
No 4
>PRK03557 zinc transporter ZitB; Provisional
Probab=99.88 E-value=8.8e-22 Score=163.94 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=99.0
Q ss_pred eeecCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHH-hcCCceeeeeeEEEEEecCceEEEEE
Q psy1891 4 TLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAEL-ESDVMIRAIYDVKGIQMGNSLIRYKA 82 (158)
Q Consensus 4 ~~~~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i-~~~~gV~~vh~lrtr~~G~~~i~v~l 82 (158)
+.+|||+|+||++|++||++|+++|++++|+|...|||.+|++...++|++.+ ++.|||.++|++|+|++|+. +.+++
T Consensus 177 ~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~vh~l~~~~~G~~-~~v~~ 255 (312)
T PRK03557 177 IIWTGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMVGEK-PVMTL 255 (312)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhcCCCceeEEEEEEEEeCCe-EEEEE
Confidence 34689999999999999999999999999999999999998888889998876 57999999999999999987 68999
Q ss_pred EEEeCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhCCCee-EEEEee
Q psy1891 83 EVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIR-HVDLEV 157 (158)
Q Consensus 83 ~v~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~i~~~iE~~I~~~~p~~~-~v~iE~ 157 (158)
|+.+++++. +|++.+++|++|+++|+..+ .|++||
T Consensus 256 hv~v~~~~~----------------------------------------~~~i~~~i~~~l~~~~~i~~vtIh~e~ 291 (312)
T PRK03557 256 HVQVIPPHD----------------------------------------HDALLDRIQDYLMHHYQIEHATIQMEY 291 (312)
T ss_pred EEEECCCCC----------------------------------------HHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 999988762 24789999999999986333 367776
No 5
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=99.84 E-value=3.3e-20 Score=150.84 Aligned_cols=117 Identities=22% Similarity=0.286 Sum_probs=103.1
Q ss_pred eeecCCcc-hHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEE
Q psy1891 4 TLYTGSHI-PDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKA 82 (158)
Q Consensus 4 ~~~~G~~~-~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l 82 (158)
+.+++|+| +||++|+++++++++.+++++|++...|||++++++..+++++.+++.|+|.++|++|+|+.|++...+++
T Consensus 161 ~~~~~~~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i 240 (284)
T PF01545_consen 161 AYLGPWFWYADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEI 240 (284)
T ss_dssp SSTT-STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEE
T ss_pred HHHHhcccccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHhhccCCceEeccceEEEEecCCcEEEEE
Confidence 34556777 99999999999999999999999999999999899999999999999999999999999999995578999
Q ss_pred EEEeCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhCCCeeE--EEEee
Q psy1891 83 EVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIRH--VDLEV 157 (158)
Q Consensus 83 ~v~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~i~~~iE~~I~~~~p~~~~--v~iE~ 157 (158)
|+.+|+++++ +++|++.+++++.+++++|++.+ |++||
T Consensus 241 ~v~v~~~~~v-------------------------------------~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p 280 (284)
T PF01545_consen 241 HVQVDPDMSV-------------------------------------EEAHEIRERIEKRLREKFPGIYDVTIHIEP 280 (284)
T ss_dssp EEEETTTSBH-------------------------------------HHHHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred EEEeCCCCCH-------------------------------------HHHHHHHHHHHHHHHHhCCCcEEEEEEEEe
Confidence 9999999977 34568999999999999999986 56666
No 6
>KOG2802|consensus
Probab=99.79 E-value=2.6e-19 Score=150.30 Aligned_cols=124 Identities=57% Similarity=0.953 Sum_probs=117.3
Q ss_pred CEEeeecCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEE
Q psy1891 1 MGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRY 80 (158)
Q Consensus 1 ~~l~~~~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v 80 (158)
|+++++||.|++|+++|++||.+++.. +.+++|++....|+..+.+
T Consensus 380 m~lss~tgnPIyD~~GSivvGaLLGmV----------------------------------e~diyDvK~~diG~g~vRf 425 (503)
T KOG2802|consen 380 MGLSSITGNPIYDSLGSIVVGALLGMV----------------------------------ENDIYDVKATDIGLGKVRF 425 (503)
T ss_pred HHHHHhcCCCCccccchHHHHHHHHHH----------------------------------HHhhhhccceeeccceeEE
Confidence 467889999999999999999998876 2348999999999999999
Q ss_pred EEEEEeCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhCCCeeEEEEeeC
Q psy1891 81 KAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIRHVDLEVL 158 (158)
Q Consensus 81 ~l~v~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~i~~~iE~~I~~~~p~~~~v~iE~~ 158 (158)
.++++||+.+.++.|+++++...++.++|+.++.++++.||.+++|++++..+.++||+|++|++++|+++||++|.+
T Consensus 426 KAE~DFdGr~vtrsYL~kqd~akml~e~~~~~~~e~le~fml~~GEnivd~lG~EvDRlEkel~~~~PeirHVDlEil 503 (503)
T KOG2802|consen 426 KAEVDFDGRVVTRSYLEKQDFAKMLQEIQEVKTPEELETFMLKHGENIVDTLGAEVDRLEKELKKRNPEIRHVDLEIL 503 (503)
T ss_pred EEEeccCchhhHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHcchHHHHHhhhHHHHHHHHHHHhCCCceeeeeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999974
No 7
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=5e-16 Score=128.38 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=99.2
Q ss_pred eeecCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEE
Q psy1891 4 TLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAE 83 (158)
Q Consensus 4 ~~~~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~ 83 (158)
..+|||+|+||++|++|+++++..+|.++|++.+.||+..|+..+.+++++.+.+.|||.++|+++.|..++......+|
T Consensus 179 i~~~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~~~~~v~~vhdlHvWsi~~~~~~~t~H 258 (296)
T COG1230 179 IRFTGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALLRIPGVASVHDLHVWSITGGEHALTLH 258 (296)
T ss_pred HHHhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHhcCCCccceeecccCCCCCCceeEEEE
Confidence 45789999999999999999999999999999999999998888899999999999999999999999998888789999
Q ss_pred EEeCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhCCCeeEEEEee
Q psy1891 84 VDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIRHVDLEV 157 (158)
Q Consensus 84 v~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~i~~~iE~~I~~~~p~~~~v~iE~ 157 (158)
+.+++..+ .+ ...+++++.+.++| ++.|+++|+
T Consensus 259 v~v~~~~~----------------------~~------------------~~~~~~~~~l~~~~-~I~hvTiQ~ 291 (296)
T COG1230 259 VVVDEVAD----------------------AD------------------AALDQIVRRLLEKY-GIEHVTIQL 291 (296)
T ss_pred EEecCccc----------------------hH------------------HHHHHHHHHHhhhc-CcceEEEEe
Confidence 99983331 11 35788888888887 888888875
No 8
>KOG1485|consensus
Probab=99.49 E-value=1.4e-13 Score=117.40 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=96.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhcC-CceeeeeeEEEEEecCceEEEEEEEE
Q psy1891 7 TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELESD-VMIRAIYDVKGIQMGNSLIRYKAEVD 85 (158)
Q Consensus 7 ~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~~-~gV~~vh~lrtr~~G~~~i~v~l~v~ 85 (158)
+.|+|+||++|++||.||+++++.-..+++..|+|++.||+.++++.....++ +.+..++.+|...+|.. +++++|+.
T Consensus 285 ~~~~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y~~g~~-~~Vev~iv 363 (412)
T KOG1485|consen 285 YYNYWLDPIGAILVSTYIIYTGGRTGLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAYTFGSH-YFVEVHIV 363 (412)
T ss_pred hhhhcccchhhhhhheehhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccccceeeeeecccce-EEEEEeee
Confidence 45899999999999999999999999999999999999999999999888885 48999999999999998 68999999
Q ss_pred eCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhCCCeeE
Q psy1891 86 FDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIRH 152 (158)
Q Consensus 86 vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~i~~~iE~~I~~~~p~~~~ 152 (158)
+|++|++ ..+|++.+-+++.|.. .|.+..
T Consensus 364 l~~~~~l-------------------------------------~~ah~i~E~lq~~ie~-l~ever 392 (412)
T KOG1485|consen 364 LDEDLSL-------------------------------------SVAHDIGETLQKKIEL-LPEVER 392 (412)
T ss_pred cCCCCcc-------------------------------------HHHHHHHHHHHHHHhh-cchhee
Confidence 9999987 3567888888888876 788764
No 9
>KOG1483|consensus
Probab=99.12 E-value=1.2e-09 Score=92.70 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=77.4
Q ss_pred EeeecCCcc---hHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEE
Q psy1891 3 LTLYTGSHI---PDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIR 79 (158)
Q Consensus 3 l~~~~G~~~---~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~ 79 (158)
+.++|+|.| +||+.++++.++|++++|-+.|+|...|+-..|..-..+.+.+.+..+|||..||++++|+.-..++.
T Consensus 252 ~v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~~~gv~~vh~lhvWqL~~~r~I 331 (404)
T KOG1483|consen 252 FVYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLTVPGVISVHDLHVWQLAGSRII 331 (404)
T ss_pred EEEecceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhcCcceeeeeeeeeeeeccceEE
Confidence 456778877 79999999999999999999999999999998888899999999999999999999999999777667
Q ss_pred EEEEEEeC
Q psy1891 80 YKAEVDFD 87 (158)
Q Consensus 80 v~l~v~vd 87 (158)
-.+||.++
T Consensus 332 At~Hi~~~ 339 (404)
T KOG1483|consen 332 ATIHIQIQ 339 (404)
T ss_pred EEEEEEec
Confidence 88888775
No 10
>KOG1482|consensus
Probab=98.96 E-value=2.2e-08 Score=84.76 Aligned_cols=112 Identities=16% Similarity=0.241 Sum_probs=97.4
Q ss_pred Eeeec-CCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEE
Q psy1891 3 LTLYT-GSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYK 81 (158)
Q Consensus 3 l~~~~-G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~ 81 (158)
+.+|. +|...||+..++-+++.+.+-..++|+....||+..|..-....+++.+.+.+||..+|++++|...-++..+.
T Consensus 249 Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l~~iegV~~VHdLhIWsiTv~k~~ls 328 (379)
T KOG1482|consen 249 IIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGLLSIEGVKAVHDLHIWSITVGKVALS 328 (379)
T ss_pred eEEecccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHhhhcceeEEEEEEEEEEecCceEEE
Confidence 34555 79999999999999999999999999999999999999999999999999999999999999999998887899
Q ss_pred EEEEeCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhCCCeeEEEE
Q psy1891 82 AEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIRHVDL 155 (158)
Q Consensus 82 l~v~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~i~~~iE~~I~~~~p~~~~v~i 155 (158)
+|+..+++-. .+ ++.+++-+.|+++| ++.++.+
T Consensus 329 ~Hv~i~~~ad----------------------~~------------------~vL~~~~~~i~~~~-~~~~vTi 361 (379)
T KOG1482|consen 329 VHLAIDSEAD----------------------AE------------------EVLDEARSLIKRRY-GISHVTI 361 (379)
T ss_pred EEEeecCCCC----------------------HH------------------HHHHHHHHHHHhhc-ceEEEEE
Confidence 9998876541 11 56788889999998 5555544
No 11
>KOG1484|consensus
Probab=98.67 E-value=3.3e-07 Score=76.89 Aligned_cols=86 Identities=10% Similarity=0.085 Sum_probs=74.0
Q ss_pred eeecCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhc---CCceeeeeeEEEEEecCceEEE
Q psy1891 4 TLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELES---DVMIRAIYDVKGIQMGNSLIRY 80 (158)
Q Consensus 4 ~~~~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~---~~gV~~vh~lrtr~~G~~~i~v 80 (158)
..++||.++||+.+++||++|+-+.+.|+|++...||-+. ||+....+.+.+++ .+||.++.+-|-|..++..+.-
T Consensus 231 i~~~gw~~aDpicsllIailIf~sv~PL~k~s~~iLLq~t-Pp~~~~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vG 309 (354)
T KOG1484|consen 231 IKLFGWMIADPICSLLIAILIFLSVLPLLKYSGKILLQRT-PPHLENSLKQCLRQISTLDGVTSVQNPHFWTLESGSVVG 309 (354)
T ss_pred HHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChhhhhHHHHHHHHhhccccceeeccCceeeccCCceEE
Confidence 3467999999999999999999999999999999999876 66677777766655 6899999999999999987667
Q ss_pred EEEEEeCCCc
Q psy1891 81 KAEVDFDGRE 90 (158)
Q Consensus 81 ~l~v~vd~~l 90 (158)
.+|+.|..|-
T Consensus 310 tlhl~V~~da 319 (354)
T KOG1484|consen 310 TLHLQVSSDA 319 (354)
T ss_pred EEEEEEecCc
Confidence 7888887665
No 12
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=93.09 E-value=0.13 Score=42.44 Aligned_cols=80 Identities=11% Similarity=0.008 Sum_probs=62.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhcCC---ceeeeeeEEEEEecCceEEEEEEEEe
Q psy1891 10 HIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELESDV---MIRAIYDVKGIQMGNSLIRYKAEVDF 86 (158)
Q Consensus 10 ~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~---gV~~vh~lrtr~~G~~~i~v~l~v~v 86 (158)
++.||..=.+++++++..-++..+.|.++.+--+|+ +..+.|...+.+.. +..+. +.+.-+.|.. .++++|+.+
T Consensus 194 ~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmtP~-el~q~ies~~~~~v~k~~f~~~-~~yvArVGr~-l~IEi~fii 270 (314)
T COG3965 194 VYADPMVLALVCLVFIPLPLGTVKSALREILLMTPN-ELQQSIESHAHEIVEKYGFPSY-HVYVARVGRG-LFIEIHFII 270 (314)
T ss_pred cccCHHHHHHHHHheeeccHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhcCchH-HHHHHHhccc-eEEEEEEEe
Confidence 457999999999999999999999999999987744 77777776655421 23333 3456778988 589999999
Q ss_pred CCCccc
Q psy1891 87 DGRELT 92 (158)
Q Consensus 87 d~~l~v 92 (158)
|+++..
T Consensus 271 p~~~~a 276 (314)
T COG3965 271 PRESDA 276 (314)
T ss_pred CCccCC
Confidence 999865
No 13
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=92.36 E-value=1.4 Score=33.37 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=48.0
Q ss_pred CCChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHh
Q psy1891 43 SIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLL 122 (158)
Q Consensus 43 ~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (158)
....+.-++|.+.+.+.|||.+.. +--.|.+ +++-+.+..++..+ .
T Consensus 71 ~~~~~~a~~i~~~v~~~~~V~~A~---vvv~~~~-a~Vav~~~~~~~~~-----------------------~------- 116 (177)
T PF09580_consen 71 NDRQQLADRIANRVKKVPGVEDAT---VVVTDDN-AYVAVDLDFNRFNT-----------------------K------- 116 (177)
T ss_pred chHHHHHHHHHHHHhcCCCceEEE---EEEECCE-EEEEEEecccccch-----------------------h-------
Confidence 345567788888888888766655 5556877 66777764222221 1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhCCCeeEEEE
Q psy1891 123 KHSENIVDMVGGEIDRIEMKLRKKYPDIRHVDL 155 (158)
Q Consensus 123 ~~~~~~~~~~h~i~~~iE~~I~~~~p~~~~v~i 155 (158)
++-++|++++++.+|.+..|+|
T Consensus 117 -----------~i~~~V~~~v~~~~p~~~~V~V 138 (177)
T PF09580_consen 117 -----------KIKKKVEKAVKSADPRIYNVYV 138 (177)
T ss_pred -----------HHHHHHHHHHHHhCCCccEEEE
Confidence 5678999999999999888876
No 14
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=91.02 E-value=0.42 Score=38.32 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=34.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCC
Q psy1891 7 TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRS 43 (158)
Q Consensus 7 ~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~ 43 (158)
+|+..+++++++++|++++..|+.++++++..|++..
T Consensus 52 yG~~r~E~l~~l~~~~~l~~~~~~~~~~si~~l~~~~ 88 (268)
T TIGR01297 52 FGHGRAEILAALLNGLFLVVVALFILYEAIERLINPE 88 (268)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5888899999999999999999999999999999754
No 15
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=88.65 E-value=5.9 Score=27.06 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCCCcc
Q psy1891 50 DKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGREL 91 (158)
Q Consensus 50 ~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l~ 91 (158)
..|.+++.+.|++.+-..+...+-|... .+.+.|+..++.+
T Consensus 7 ~~Ie~vl~~~~~~~~~y~i~v~~~~~~D-~l~v~vE~~~~~~ 47 (96)
T PF14535_consen 7 SQIEEVLREFPEVSPEYQIVVTREGGLD-ELTVRVELRPGFS 47 (96)
T ss_dssp HHHHHHHCTSTTEEEEEEEEEEEETTEE-EEEEEEEESTTCC
T ss_pred HHHHHHHHhCcCCCCcEEEEEEcCCCCc-EEEEEEEECCccC
Confidence 4788899999999988888888888764 6788888887663
No 16
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=85.61 E-value=1.7 Score=36.27 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=33.7
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCC
Q psy1891 7 TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGR 42 (158)
Q Consensus 7 ~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~ 42 (158)
+|..-+..++|+++|++|+.+|+.+++++...++..
T Consensus 75 yGh~k~E~l~sl~~~~~i~~~g~~i~~~a~~~~~~~ 110 (304)
T COG0053 75 YGHGKAETLASLIVSILIFAAGFEILLEAIKRLISP 110 (304)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 577889999999999999999999999999999984
No 17
>PRK03557 zinc transporter ZitB; Provisional
Probab=85.19 E-value=1.6 Score=36.43 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=34.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCC
Q psy1891 7 TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRS 43 (158)
Q Consensus 7 ~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~ 43 (158)
+|+.-+.+++++++|++|+..|+.++++++..|.+..
T Consensus 81 yG~~r~E~l~al~~~~~l~~~~~~i~~eai~~l~~~~ 117 (312)
T PRK03557 81 FGWLRLTTLAAFVNAIALVVITILIVWEAIERFRTPR 117 (312)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5888899999999999999999999999999998754
No 18
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=83.09 E-value=2.4 Score=35.01 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=34.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCC
Q psy1891 7 TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSI 44 (158)
Q Consensus 7 ~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~ 44 (158)
+|+.-+.+++++++|++++..|+.++.+++..|+....
T Consensus 73 yG~~r~E~l~~l~~~~~l~~~~~~~~~esi~~l~~~~~ 110 (299)
T PRK09509 73 FGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTP 110 (299)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 58888999999999999999999999999999987543
No 19
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=78.79 E-value=15 Score=26.16 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=38.4
Q ss_pred hHHhhhCCCCCh-----HHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEE
Q psy1891 35 NIEALVGRSIPD-----DYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVD 85 (158)
Q Consensus 35 s~~~Lld~~~~~-----~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~ 85 (158)
.+..|+|...|+ +....|++.++..|.|.+|.++-..+-|+. ..+.+.|.
T Consensus 52 ele~lig~~~~~~~~~sEi~r~I~EaL~~d~rI~~V~~f~f~~~~~~-l~v~f~V~ 106 (112)
T PF10934_consen 52 ELEDLIGKNYPREYVESEIEREIEEALLQDPRITSVENFSFEWEGDS-LYVSFTVT 106 (112)
T ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEECCE-EEEEEEEE
Confidence 356788884443 345778999999999999999999999987 45666553
No 20
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=77.90 E-value=19 Score=24.72 Aligned_cols=48 Identities=17% Similarity=0.020 Sum_probs=27.9
Q ss_pred CChHHHHHHH-HHHhcCCceeeeee------------------EEEEEe-cCceEEEEEEEEeCCCccc
Q psy1891 44 IPDDYLDKIN-AELESDVMIRAIYD------------------VKGIQM-GNSLIRYKAEVDFDGRELT 92 (158)
Q Consensus 44 ~~~~~~~~I~-~~i~~~~gV~~vh~------------------lrtr~~-G~~~i~v~l~v~vd~~l~v 92 (158)
.+++.+++|. ..+.++|||.++.. ++++.- +.. +.+++++.+...-++
T Consensus 7 Is~~Vi~~Ia~~a~~~v~GV~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~-i~v~l~v~v~~g~~i 74 (108)
T PF03780_consen 7 ISDRVIAKIAAKAAAEVEGVVGVSGRFADGISDRLGRKRPSKGVKVEVDEDGG-ITVDLHVVVEYGVNI 74 (108)
T ss_pred ECHHHHHHHHHHHHHhcCCcccccccccccchhccCccCCCCCeEEEEccCcc-eEEEEEEEEECCccH
Confidence 4556666665 33444677665544 455544 444 677788777766544
No 21
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=70.82 E-value=6.6 Score=31.52 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=34.1
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCC
Q psy1891 7 TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGR 42 (158)
Q Consensus 7 ~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~ 42 (158)
+|+.-+.++++++.|++++..++.++.+++..+++.
T Consensus 61 fG~~r~e~l~~~~~~~~l~~~~~~~~~~si~~~~~~ 96 (284)
T PF01545_consen 61 FGYGRLEPLAALIVSILLIFLGLFLIVESIQRLISP 96 (284)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSS
T ss_pred cchhhhhhHhhhhhhhhHhhhHHHHHHHHhhccccc
Confidence 588899999999999999999999999999999976
No 22
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=65.74 E-value=3.7 Score=25.56 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=25.6
Q ss_pred hhhCCCCChHHHHHHHHHHhcCCceeeeee
Q psy1891 38 ALVGRSIPDDYLDKINAELESDVMIRAIYD 67 (158)
Q Consensus 38 ~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~ 67 (158)
.|.|..++++..+++.+.+.+.+||.++++
T Consensus 29 ~L~G~v~s~~~~~~a~~~a~~v~gv~~V~n 58 (64)
T PF04972_consen 29 TLSGEVPSQEQRDAAERLARSVAGVREVVN 58 (64)
T ss_dssp EEEEEESSCHHHHHHHHHHHCC-STSEEEE
T ss_pred EEEeeCcHHHHHHhHHhhhccCCCcCEEEE
Confidence 477888899999999999999999988874
No 23
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.47 E-value=37 Score=21.75 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCCCc
Q psy1891 45 PDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGRE 90 (158)
Q Consensus 45 ~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l 90 (158)
.|..++++.+.+.+.. .++-+++.+..++. +.+.+.+.++++.
T Consensus 9 rpGiv~~vt~~la~~~--~nI~dl~~~~~~~~-f~~~~~v~~p~~~ 51 (75)
T cd04870 9 RPGLTSALTEVLAAHG--VRILDVGQAVIHGR-LSLGILVQIPDSA 51 (75)
T ss_pred CCCHHHHHHHHHHHCC--CCEEecccEEEcCe-eEEEEEEEcCCCC
Confidence 4567888888887764 58888888888876 6677777777664
No 24
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=62.02 E-value=8.8 Score=23.42 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=11.4
Q ss_pred cchHHHHHHHHHHH
Q psy1891 10 HIPDAVGSFLVGGI 23 (158)
Q Consensus 10 ~~~D~i~ai~Ia~~ 23 (158)
-++||+.|++||+.
T Consensus 5 r~lDP~~av~iG~~ 18 (47)
T PF11654_consen 5 RFLDPLFAVFIGTS 18 (47)
T ss_pred hhhhhHHHHHHHHH
Confidence 35999999998875
No 25
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.34 E-value=10 Score=28.12 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=25.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy1891 9 SHIPDAVGSFLVGGILGCVAYFIVSSNIEA 38 (158)
Q Consensus 9 ~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~ 38 (158)
.+|.=+++|++||++|++...++...+.+.
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 467889999999999999999998877665
No 26
>COG5547 Small integral membrane protein [Function unknown]
Probab=56.25 E-value=18 Score=23.12 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=20.0
Q ss_pred cCCcchHHHHHHHHHHHHHHHHH
Q psy1891 7 TGSHIPDAVGSFLVGGILGCVAY 29 (158)
Q Consensus 7 ~G~~~~D~i~ai~Ia~~I~~~a~ 29 (158)
+-||++-++++++||++++..|+
T Consensus 7 fkypIIgglvglliAili~t~Gf 29 (62)
T COG5547 7 FKYPIIGGLVGLLIAILILTFGF 29 (62)
T ss_pred hccchHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999987774
No 27
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=54.73 E-value=81 Score=26.33 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhh-------------hCCCCChHHHHHHHHHHhcCCceeeeee
Q psy1891 14 AVGSFLVGGILGCVAYFIVSSNIEAL-------------VGRSIPDDYLDKINAELESDVMIRAIYD 67 (158)
Q Consensus 14 ~i~ai~Ia~~I~~~a~~l~~~s~~~L-------------ld~~~~~~~~~~I~~~i~~~~gV~~vh~ 67 (158)
.++++.++++++-..+-+.. |.+.+ ++...+++..+++.+.+++.|+|.++.-
T Consensus 34 si~ti~i~L~l~g~~~l~~~-n~~~~~~~~~~~~~i~vyl~~~~~~~~~~~l~~~l~~~~~V~~v~~ 99 (309)
T TIGR00439 34 TLIVIAVSLTLPLVMYLGIK-NGQSALTQLYPSPQITVYLEKALAQSDADTVVSLLTRDKGVENINY 99 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCceEEEEeCCCCCHHHHHHHHHHHhCCCCccEEEE
Confidence 45566677766655554443 33222 2456788889999999999999998764
No 28
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=54.58 E-value=93 Score=23.63 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhh
Q psy1891 47 DYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSE 126 (158)
Q Consensus 47 ~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (158)
+.-++|.+.+.+.|+ |.+-.+--+|++ .++-+.+ +.+.- . .
T Consensus 54 ~~A~~Ia~~v~~v~~---V~dA~vvVtg~~-A~Vgv~~--~~~~~---------------------~-~----------- 94 (158)
T TIGR02898 54 DVADEIASEAAKVKG---VKDATVVITGNY-AYVGVDL--TNGLE---------------------G-S----------- 94 (158)
T ss_pred HHHHHHHHHHhcCCC---CceEEEEEECCE-EEEEEEc--CCCcc---------------------h-h-----------
Confidence 556677777766665 555667788988 5565544 43330 0 0
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCeeEEEE
Q psy1891 127 NIVDMVGGEIDRIEMKLRKKYPDIRHVDL 155 (158)
Q Consensus 127 ~~~~~~h~i~~~iE~~I~~~~p~~~~v~i 155 (158)
...++=.++++++++..|....|++
T Consensus 95 ----~~~~iK~~Va~~Vk~~dp~~~~VyV 119 (158)
T TIGR02898 95 ----VTDELKEKVAETVKSTDNRIANVYV 119 (158)
T ss_pred ----hHHHHHHHHHHHHHhhCCCcceEEE
Confidence 1124557888888888999888776
No 29
>cd00643 HMG-CoA_reductase_classI Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class I enzyme, homotetramer. Catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals this is the rate limiting committed step in cholesterol biosynthesis. Class I enzymes are found predominantly in eukaryotes and contain N-terminal membrane regions. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR are divergent in their N-terminal regions, but are conserved in their active site. In contrast, human and bacterial HMGR differ in their active site architecture.
Probab=52.88 E-value=1.5e+02 Score=26.10 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCCCc
Q psy1891 48 YLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGRE 90 (158)
Q Consensus 48 ~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l 90 (158)
..++|++..++....-++.++.++..|+. +++++.++..+-|
T Consensus 150 ~~~~i~~~a~stsr~g~l~~i~~~~~g~~-v~lrf~~~TgDAM 191 (403)
T cd00643 150 NFEAIKEVAESTSRHARLQSIKPYIAGRS-VYLRFEYTTGDAM 191 (403)
T ss_pred HHHHHHHHHHhcCCCcccceEEEEecCCE-EEEEEEEEcCcch
Confidence 45677778877766678999999988975 6777777655444
No 30
>PF00368 HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A reductase; InterPro: IPR002202 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase. There are two distinct classes of hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase enzymes: class I consists of eukaryotic and most archaeal enzymes (1.1.1.34 from EC), while class II consists of prokaryotic enzymes (1.1.1.88 from EC) [, ]. Class I HMG-CoA reductases catalyse the NADP-dependent synthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). In vertebrates, membrane-bound HMG-CoA reductase is the rate-limiting enzyme in the biosynthesis of cholesterol and other isoprenoids. In plants, mevalonate is the precursor of all isoprenoid compounds []. The reduction of HMG-CoA to mevalonate is regulated by feedback inhibition by sterols and non-sterol metabolites derived from mevalonate, including cholesterol. In archaea, HMG-CoA reductase is a cytoplasmic enzyme involved in the biosynthesis of the isoprenoids side chains of lipids []. Class I HMG-CoA reductases consist of an N-terminal membrane domain (lacking in archaeal enzymes), and a C-terminal catalytic region. The catalytic region can be subdivided into three domains: an N-domain (N-terminal), a large L-domain, and a small S-domain (inserted within the L-domain). The L-domain binds the substrate, while the S-domain binds NADP. Class II HMG-CoA reductases catalyse the reverse reaction of class I enzymes, namely the NAD-dependent synthesis of HMG-CoA from mevalonate and CoA []. Some bacteria, such as Pseudomonas mevalonii, can use mevalonate as the sole carbon source. Class II enzymes lack a membrane domain. Their catalytic region is structurally related to that of class I enzymes, but it consists of only two domains: a large L-domain and a small S-domain (inserted within the L-domain). As with class I enzymes, the L-domain binds substrate, but the S-domain binds NAD (instead of NADP in class I).; GO: 0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity, 0050662 coenzyme binding, 0015936 coenzyme A metabolic process, 0055114 oxidation-reduction process; PDB: 2Q6B_C 2Q6C_D 1HWI_C 1HWJ_C 3CD5_B 2R4F_C 1HWL_B 1HWK_C 1DQA_B 3CCT_D ....
Probab=52.29 E-value=1.3e+02 Score=26.01 Aligned_cols=71 Identities=8% Similarity=0.099 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhhh
Q psy1891 48 YLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSEN 127 (158)
Q Consensus 48 ~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (158)
..+.|++..+....--++.++.++..|+. +.++++++..+-|= .
T Consensus 124 ~~~~l~~~a~~~sr~ggl~~i~~~~~g~~-v~l~~~~dtgDAMG---------a-------------------------- 167 (373)
T PF00368_consen 124 NFEELKEIANSTSRGGGLRDIEVRIVGRF-VHLRFHYDTGDAMG---------A-------------------------- 167 (373)
T ss_dssp THHHHHHHHHHHCCTEEEEEEEEEECSTE-EEEEEEEEETTC-----------H--------------------------
T ss_pred HHHHHHHhhhhcCCceeeeEEEEEecCCE-EEEEEEEEccccch---------h--------------------------
Confidence 34455555555554568888889888887 67888887765551 0
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCeeEEEEe
Q psy1891 128 IVDMVGGEIDRIEMKLRKKYPDIRHVDLE 156 (158)
Q Consensus 128 ~~~~~h~i~~~iE~~I~~~~p~~~~v~iE 156 (158)
.++-..++.+-..|++.+|....+.|+
T Consensus 168 --Nmvn~~~e~v~~~i~~~~~~~~~~~I~ 194 (373)
T PF00368_consen 168 --NMVNTATEAVCPWIEEQFGGMVLMSIL 194 (373)
T ss_dssp --HHHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred --hHHHHHHHHHHHHHHHhcccceEEeee
Confidence 122355677777777777776555554
No 31
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=51.74 E-value=16 Score=26.67 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy1891 14 AVGSFLVGGILGCVAYFIVSSNI 36 (158)
Q Consensus 14 ~i~ai~Ia~~I~~~a~~l~~~s~ 36 (158)
+++|++||++|++.+.+++..+.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~ 24 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQ 24 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccch
Confidence 47888999999888888887775
No 32
>PRK11677 hypothetical protein; Provisional
Probab=51.18 E-value=19 Score=26.72 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=22.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1891 10 HIPDAVGSFLVGGILGCVAYFIVSSNI 36 (158)
Q Consensus 10 ~~~D~i~ai~Ia~~I~~~a~~l~~~s~ 36 (158)
.|+=+++|++||++|++.+.++...+.
T Consensus 2 ~W~~a~i~livG~iiG~~~~R~~~~~~ 28 (134)
T PRK11677 2 TWEYALIGLVVGIIIGAVAMRFGNRKL 28 (134)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 367789999999999999988876664
No 33
>KOG1485|consensus
Probab=48.44 E-value=25 Score=30.86 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=32.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhC
Q psy1891 8 GSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVG 41 (158)
Q Consensus 8 G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld 41 (158)
|..-+.|++.++++.++..+|..+++.+.+.|.|
T Consensus 178 G~~r~EtvG~i~~S~iMa~agv~ii~sSl~~i~~ 211 (412)
T KOG1485|consen 178 GRGRVETVGLIAVSVIMAMAGVQIIWSSLRLIVG 211 (412)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhc
Confidence 6677999999999999999999999999999999
No 34
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=48.13 E-value=1.2e+02 Score=25.31 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHh-------------hhCCCCChHHHHHHHHHHhcCCceeeeee
Q psy1891 14 AVGSFLVGGILGCVAYFIVSSNIEA-------------LVGRSIPDDYLDKINAELESDVMIRAIYD 67 (158)
Q Consensus 14 ~i~ai~Ia~~I~~~a~~l~~~s~~~-------------Lld~~~~~~~~~~I~~~i~~~~gV~~vh~ 67 (158)
.+.++.++++++-..+-+.. |.+. -++...+++..+++.+.+.+.|+|.++.-
T Consensus 34 si~~i~i~L~l~g~~~l~~~-n~~~~~~~~~~~~ei~vyl~~~~~~~~~~~l~~~L~~~~~V~~v~~ 99 (309)
T PRK11026 34 TVMVIAISLTLPSVCYLVWK-NVNQAATQWYPSPQLTVYLDKTLDDDAANAVVEQLKAEDGVEKVNY 99 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCceEEEEECCCCCHHHHHHHHHHHhCCCCcceEEE
Confidence 45566677776665554443 2222 23456788889999999999999988764
No 35
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=47.20 E-value=1.8e+02 Score=28.44 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=46.1
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhh--------------CCCCChHHHHHHHHHHhc-CCceeeeeeEEEE
Q psy1891 7 TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALV--------------GRSIPDDYLDKINAELES-DVMIRAIYDVKGI 71 (158)
Q Consensus 7 ~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Ll--------------d~~~~~~~~~~I~~~i~~-~~gV~~vh~lrtr 71 (158)
+.|.+=-|+..+++.+.++..|+..+..--..++ ..+.|++..+.|.+-+++ ..++.++.++++.
T Consensus 4 ~~~~i~~~~~~~~l~~~l~~~G~~~~~~lp~~~~P~~~~p~v~V~~~~pGas~~~ve~~vt~piE~~l~~i~gv~~i~S~ 83 (1025)
T PRK10614 4 FALFIYRPVATILLSLAITLCGILGFRLLPVAPLPQVDFPVIMVSASLPGASPETMASSVATPLERSLGRIAGVNEMTSS 83 (1025)
T ss_pred cHHHhcCCHHHHHHHHHHHHHHHHHHhcCCHhhCCCCCCceEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 3444555788888888888888888776655554 223355555555444433 3455555566654
Q ss_pred EecCceEEEEEEEEeCCC
Q psy1891 72 QMGNSLIRYKAEVDFDGR 89 (158)
Q Consensus 72 ~~G~~~i~v~l~v~vd~~ 89 (158)
..... ..+.++...+.|
T Consensus 84 s~~G~-s~i~l~f~~~~d 100 (1025)
T PRK10614 84 SSLGS-TRIILQFDFDRD 100 (1025)
T ss_pred ecCCe-EEEEEEEECCCC
Confidence 43322 345555444333
No 36
>PRK00523 hypothetical protein; Provisional
Probab=46.36 E-value=34 Score=22.75 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=25.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhc
Q psy1891 8 GSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELES 58 (158)
Q Consensus 8 G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~ 58 (158)
|..++=.+.++++|++ .|+.+.|.-..--+.+. ||-..+.||....+
T Consensus 5 ~l~I~l~i~~li~G~~---~Gffiark~~~k~l~~N-Ppine~mir~M~~Q 51 (72)
T PRK00523 5 GLALGLGIPLLIVGGI---IGYFVSKKMFKKQIREN-PPITENMIRAMYMQ 51 (72)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHC-cCCCHHHHHHHHHH
Confidence 4444445566666654 45566666655555544 44444566655443
No 37
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=45.74 E-value=47 Score=18.12 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Q psy1891 10 HIPDAVGSFLVGGILGCVAYFIVSS 34 (158)
Q Consensus 10 ~~~D~i~ai~Ia~~I~~~a~~l~~~ 34 (158)
.|+|.+.+..-.++.+|.-+-++|.
T Consensus 2 ~~~~wls~a~a~~Lf~YLv~ALlRa 26 (29)
T PRK14740 2 TVLDWLSLALATGLFVYLLVALLRA 26 (29)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5788888888888888888877763
No 38
>PRK12704 phosphodiesterase; Provisional
Probab=44.87 E-value=43 Score=30.22 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhhhh
Q psy1891 49 LDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENI 128 (158)
Q Consensus 49 ~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (158)
.+++.++..+.+||....-+ +.|.. + .|-|+|+..- + .++
T Consensus 445 l~~le~i~~~~~gv~~~yai---qaGre-i----rv~v~~~~v~--------------------d-~~~----------- 484 (520)
T PRK12704 445 LEKLEEIANSFEGVEKAYAI---QAGRE-I----RVIVKPDKVD--------------------D-LQA----------- 484 (520)
T ss_pred HHHHHHHHHhCCcHHHHHHH---hcCce-E----EEEeCCCcCC--------------------h-HHH-----------
Confidence 45667788888888777654 78887 3 4455777532 1 111
Q ss_pred hhhhHHHHHHHHHHHHHhCCCeeEEEE
Q psy1891 129 VDMVGGEIDRIEMKLRKKYPDIRHVDL 155 (158)
Q Consensus 129 ~~~~h~i~~~iE~~I~~~~p~~~~v~i 155 (158)
..-+++++.+||..+ .||+--.|++
T Consensus 485 ~~la~~i~~~ie~~~--~ypg~ikvtv 509 (520)
T PRK12704 485 VRLARDIAKKIEEEL--QYPGQIKVTV 509 (520)
T ss_pred HHHHHHHHHHHHHhC--cCCCceEEEE
Confidence 123457888888887 5998544443
No 39
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=42.42 E-value=43 Score=22.68 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhCCCee-EEEEe
Q psy1891 134 GEIDRIEMKLRKKYPDIR-HVDLE 156 (158)
Q Consensus 134 ~i~~~iE~~I~~~~p~~~-~v~iE 156 (158)
.+..+++++|...||++. +|.|-
T Consensus 20 AL~~EL~kRl~~~fPd~~~~v~Vr 43 (81)
T PRK10597 20 ALAGELSRRIQYAFPDNEGHVSVR 43 (81)
T ss_pred HHHHHHHHHHHhhCCCCCccEEEe
Confidence 577899999999999985 45553
No 40
>PRK01844 hypothetical protein; Provisional
Probab=42.40 E-value=42 Score=22.31 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhc
Q psy1891 11 IPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELES 58 (158)
Q Consensus 11 ~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~ 58 (158)
++=+++++++|+++ |+.+.|.-..--+.+. ||-..+.||....+
T Consensus 7 I~l~I~~li~G~~~---Gff~ark~~~k~lk~N-Ppine~mir~Mm~Q 50 (72)
T PRK01844 7 ILVGVVALVAGVAL---GFFIARKYMMNYLQKN-PPINEQMLKMMMMQ 50 (72)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHC-CCCCHHHHHHHHHH
Confidence 34456666666643 4555666555555544 34444555554443
No 41
>PRK11023 outer membrane lipoprotein; Provisional
Probab=42.06 E-value=20 Score=27.79 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=26.5
Q ss_pred hhhCCCCChHHHHHHHHHHhcCCceeeeee
Q psy1891 38 ALVGRSIPDDYLDKINAELESDVMIRAIYD 67 (158)
Q Consensus 38 ~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~ 67 (158)
.|.|+.++++...+..+++.+.+||.++++
T Consensus 80 ~L~G~V~~~~~k~~A~~ia~~v~GV~~V~N 109 (191)
T PRK11023 80 LLTGQSPNAELSERAKQIAMGVEGVNEVYN 109 (191)
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCceeecc
Confidence 477888888999999999999999999884
No 42
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=39.60 E-value=94 Score=28.03 Aligned_cols=65 Identities=26% Similarity=0.367 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhhhh
Q psy1891 49 LDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENI 128 (158)
Q Consensus 49 ~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (158)
+..+.++.++.+||....- .+.|.. + .|-|+|+..- + .++
T Consensus 439 l~~le~i~~~~~gv~~~~a---iqaGre-i----rv~v~~~~v~--------------------d-~~~----------- 478 (514)
T TIGR03319 439 LEKLEEIANSFEGVEKSYA---IQAGRE-I----RVMVKPEKIS--------------------D-DQA----------- 478 (514)
T ss_pred HHHHHHHHHhCCCchhhhh---hhcCcE-E----EEEecCCcCC--------------------h-HHH-----------
Confidence 3457788888888777665 478887 3 4445676532 1 111
Q ss_pred hhhhHHHHHHHHHHHHHhCCCeeEEEE
Q psy1891 129 VDMVGGEIDRIEMKLRKKYPDIRHVDL 155 (158)
Q Consensus 129 ~~~~h~i~~~iE~~I~~~~p~~~~v~i 155 (158)
..-+++++.+||..+ .||+--.|++
T Consensus 479 ~~la~~i~~~ie~~~--~ypg~ikvtv 503 (514)
T TIGR03319 479 VVLARDIAKKIEEEL--EYPGQIKVTV 503 (514)
T ss_pred HHHHHHHHHHHHHhC--cCCCceEEEE
Confidence 123467888888887 5998544443
No 43
>PF05371 Phage_Coat_Gp8: Phage major coat protein, Gp8; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1IFK_A 2C0W_A 2HI5_A 1FDM_A 1IFJ_A 2C0X_A 1IFI_A 1IFD_A 1MZT_A 1IFL_A ....
Probab=39.58 E-value=88 Score=19.44 Aligned_cols=26 Identities=4% Similarity=-0.212 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy1891 12 PDAVGSFLVGGILGCVAYFIVSSNIE 37 (158)
Q Consensus 12 ~D~i~ai~Ia~~I~~~a~~l~~~s~~ 37 (158)
++..-.+++.+.....+++||++..+
T Consensus 25 i~~aw~vvv~v~gafigirlFKKf~s 50 (52)
T PF05371_consen 25 IGYAWPVVVLVTGAFIGIRLFKKFAS 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 45556677888888889999998765
No 44
>PRK02047 hypothetical protein; Provisional
Probab=39.57 E-value=1.2e+02 Score=20.64 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=28.2
Q ss_pred hCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCce-EEEEEEEEe
Q psy1891 40 VGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSL-IRYKAEVDF 86 (158)
Q Consensus 40 ld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~-i~v~l~v~v 86 (158)
||.+ .++..+.|.+++..+..-.+...+.+|.+.... ..+.+.+.+
T Consensus 22 IG~~-~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v 68 (91)
T PRK02047 22 MGKA-HPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRA 68 (91)
T ss_pred EEeC-cHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEE
Confidence 3433 567788899999876443334557777775553 455555544
No 45
>PRK10568 periplasmic protein; Provisional
Probab=39.23 E-value=25 Score=27.57 Aligned_cols=32 Identities=9% Similarity=0.036 Sum_probs=28.1
Q ss_pred HHhhhCCCCChHHHHHHHHHHhcCCceeeeee
Q psy1891 36 IEALVGRSIPDDYLDKINAELESDVMIRAIYD 67 (158)
Q Consensus 36 ~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~ 67 (158)
.-.|+|...+++..+++.+++.+.+||.++++
T Consensus 88 ~V~L~G~V~s~~~~~~a~~ia~~v~GV~~V~n 119 (203)
T PRK10568 88 VVTLSGFVESQAQAEEAVKVAKGVEGVTSVSD 119 (203)
T ss_pred EEEEEEEeCCHHHHHHHHHHHHhCCCceEEEe
Confidence 34688988889999999999999999999885
No 46
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=38.67 E-value=78 Score=20.52 Aligned_cols=40 Identities=20% Similarity=0.387 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhc
Q psy1891 15 VGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELES 58 (158)
Q Consensus 15 i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~ 58 (158)
++++++|++ .||.+.|.-..--+.+. ||-..+.||....+
T Consensus 4 ilali~G~~---~Gff~ar~~~~k~l~~N-Ppine~mir~M~~Q 43 (64)
T PF03672_consen 4 ILALIVGAV---IGFFIARKYMEKQLKEN-PPINEKMIRAMMMQ 43 (64)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHH
Confidence 344555543 35555665555545444 33344455554443
No 47
>PRK00106 hypothetical protein; Provisional
Probab=38.62 E-value=53 Score=29.87 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhhhh
Q psy1891 49 LDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENI 128 (158)
Q Consensus 49 ~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (158)
++++.++..++|||.... +.+.|.. +.|-|+|+..- + .++
T Consensus 460 l~~lE~ia~~~~gV~~~y---aiqaGRE-----iRviV~p~~v~--------------------D-~~~----------- 499 (535)
T PRK00106 460 LRDLEEIANSFDGVQNSF---ALQAGRE-----IRIMVQPEKIS--------------------D-DQV----------- 499 (535)
T ss_pred HHHHHHHHhcCCcHHHHH---HHhcCCe-----EEEEecCCcCC--------------------h-HHH-----------
Confidence 455667888899876655 5567877 34445777632 1 111
Q ss_pred hhhhHHHHHHHHHHHHHhCCCeeEEE
Q psy1891 129 VDMVGGEIDRIEMKLRKKYPDIRHVD 154 (158)
Q Consensus 129 ~~~~h~i~~~iE~~I~~~~p~~~~v~ 154 (158)
..-+++++.+||..+ .||+--.|+
T Consensus 500 ~~la~~ia~~Ie~~~--~yPG~ikvt 523 (535)
T PRK00106 500 TILAHKVREKIENNL--DYPGNIKVT 523 (535)
T ss_pred HHHHHHHHHHHHHhC--cCCCceEEE
Confidence 123457888888887 599854444
No 48
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=36.34 E-value=79 Score=20.34 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhCCCee
Q psy1891 134 GEIDRIEMKLRKKYPDIR 151 (158)
Q Consensus 134 ~i~~~iE~~I~~~~p~~~ 151 (158)
.+..+++++|.+.||++.
T Consensus 8 AL~~EL~kRl~~~yPd~~ 25 (65)
T PF06183_consen 8 ALESELTKRLHRQYPDAE 25 (65)
T ss_dssp HHHHHHHHHHHHH-SS-E
T ss_pred HHHHHHHHHHHHHCCCce
Confidence 567899999999999964
No 49
>PRK00907 hypothetical protein; Provisional
Probab=36.08 E-value=1.5e+02 Score=20.50 Aligned_cols=46 Identities=4% Similarity=-0.036 Sum_probs=29.2
Q ss_pred hCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCce-EEEEEEEEe
Q psy1891 40 VGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSL-IRYKAEVDF 86 (158)
Q Consensus 40 ld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~-i~v~l~v~v 86 (158)
||.+ .++..+.|.+++..+..-.+-..+..|.+.... ..+.+.|.+
T Consensus 23 mG~a-~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a 69 (92)
T PRK00907 23 MGTA-ERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA 69 (92)
T ss_pred EEcC-chhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE
Confidence 5654 778889999999875322345567667765543 455555544
No 50
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=34.39 E-value=2e+02 Score=24.07 Aligned_cols=27 Identities=7% Similarity=0.090 Sum_probs=23.0
Q ss_pred hCCCCChHHHHHHHHHHhcCCceeeee
Q psy1891 40 VGRSIPDDYLDKINAELESDVMIRAIY 66 (158)
Q Consensus 40 ld~~~~~~~~~~I~~~i~~~~gV~~vh 66 (158)
++..++++..+.+++.++..|||.++.
T Consensus 65 L~~~~~~~~~~~v~~~i~~~~gV~~v~ 91 (297)
T COG2177 65 LQIDADQDDAALVREKIEGIPGVKSVR 91 (297)
T ss_pred EecCCChHHHHHHHHHHhcCCCcceEE
Confidence 456678888899999999999998876
No 51
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=33.18 E-value=53 Score=17.87 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=20.9
Q ss_pred HHHhHHhhhCCCCChHHHHHHHHHHhcCC
Q psy1891 32 VSSNIEALVGRSIPDDYLDKINAELESDV 60 (158)
Q Consensus 32 ~~~s~~~Lld~~~~~~~~~~I~~~i~~~~ 60 (158)
+++.+...+|..++++...++.+-+...|
T Consensus 4 ~~~~l~~y~dg~L~~~~~~~~~~HL~~C~ 32 (36)
T PF13490_consen 4 VRELLSAYLDGELSPEERARLEAHLASCP 32 (36)
T ss_dssp -HHHHHHHHCT-S-HHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCH
Confidence 45677788899999999999999887654
No 52
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=33.06 E-value=1e+02 Score=20.96 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHH
Q psy1891 14 AVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINA 54 (158)
Q Consensus 14 ~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~ 54 (158)
++++++|+++|....|.+...-.+.+.-+.-=+..+++|++
T Consensus 8 ~iialiv~~iiaIvvW~iv~ieYrk~~rqrkId~li~RIre 48 (81)
T PF00558_consen 8 AIIALIVALIIAIVVWTIVYIEYRKIKRQRKIDRLIERIRE 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------CHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 67888888888888888866666665544333444455544
No 53
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=33.02 E-value=92 Score=21.05 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEE
Q psy1891 46 DDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKA 82 (158)
Q Consensus 46 ~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l 82 (158)
++..+++.+.+.+.|+|..++ +.+|...+.+.+
T Consensus 74 ~~~~~~v~~~l~~~p~v~~~~----~~~G~~d~~~~~ 106 (108)
T smart00344 74 PDKLEEFLEKLEKLPEVVEVY----LVTGDYDYLLKV 106 (108)
T ss_pred hhHHHHHHHHHhCCcceEEee----EecCCCCEEEEE
Confidence 567899999999999999888 445765443433
No 54
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=32.86 E-value=74 Score=20.16 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHhcCCceeeeeeEEE
Q psy1891 44 IPDDYLDKINAELESDVMIRAIYDVKG 70 (158)
Q Consensus 44 ~~~~~~~~I~~~i~~~~gV~~vh~lrt 70 (158)
.+-+.+.++.+.+++.|||.++..+++
T Consensus 46 ~~~~~L~~li~~L~~i~gV~~V~R~~~ 72 (74)
T cd04877 46 IEFEKLQTLMPEIRRIDGVEDVKTVPY 72 (74)
T ss_pred cCHHHHHHHHHHHhCCCCceEEEEeec
Confidence 355678899999999999999987764
No 55
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=32.38 E-value=1.2e+02 Score=25.54 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=34.9
Q ss_pred ecCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCC
Q psy1891 6 YTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRS 43 (158)
Q Consensus 6 ~~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~ 43 (158)
.+||..+.-++|++=|++++..+..+++|++.-|....
T Consensus 83 TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~ 120 (296)
T COG1230 83 TFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPP 120 (296)
T ss_pred CccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 36999999999999999999999999999999998654
No 56
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=32.31 E-value=76 Score=23.84 Aligned_cols=37 Identities=3% Similarity=-0.114 Sum_probs=24.9
Q ss_pred ecCCcchHHHHHHHHHHHHHHHHH---HHHHHhHHhhhCC
Q psy1891 6 YTGSHIPDAVGSFLVGGILGCVAY---FIVSSNIEALVGR 42 (158)
Q Consensus 6 ~~G~~~~D~i~ai~Ia~~I~~~a~---~l~~~s~~~Lld~ 42 (158)
.+||+..|+..-.+|.++|++..+ ..++.-+...|++
T Consensus 2 ~~~~~~~~~~~w~~i~f~il~~iL~~~k~l~~pi~~~le~ 41 (167)
T PRK14475 2 QSFFNLSNPEFWVGAGLLIFFGILIALKVLPKALAGALDA 41 (167)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 367888888777777777777654 3345555666664
No 57
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=31.93 E-value=1.4e+02 Score=19.07 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCC
Q psy1891 45 PDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDG 88 (158)
Q Consensus 45 ~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~ 88 (158)
.|..+..+.+.+.+..+ ++-+++....|.. +.+.+.+++++
T Consensus 12 rpGiv~~v~~~l~~~g~--ni~d~~~~~~~~~-f~~~~~v~~~~ 52 (76)
T PF13740_consen 12 RPGIVAAVTGVLAEHGC--NIEDSRQAVLGGR-FTLIMLVSIPE 52 (76)
T ss_dssp -TTHHHHHHHHHHCTT---EEEEEEEEEETTE-EEEEEEEEESH
T ss_pred CCcHHHHHHHHHHHCCC--cEEEEEEEEEcCe-EEEEEEEEeCc
Confidence 45678889898888764 8999999999998 67788887763
No 58
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=31.86 E-value=4.3e+02 Score=25.77 Aligned_cols=44 Identities=7% Similarity=0.102 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCCCc
Q psy1891 46 DDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGRE 90 (158)
Q Consensus 46 ~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l 90 (158)
++..+.+++...+....-+..++.++..|+. +++++.++..+-|
T Consensus 609 ~e~~~~ik~~~~StsR~g~L~~I~~~i~g~~-v~lrf~~~TGDAM 652 (886)
T TIGR00920 609 PENFAVIKDAFDSTSRFARLKKIHIAMAGRN-LYIRFQAKTGDAM 652 (886)
T ss_pred hHhHHHHHHhhhccCcccceeeEEEEeeCCE-EEEEEEEEcCchh
Confidence 5677888888877766678889999888875 6777776554444
No 59
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=31.00 E-value=32 Score=26.13 Aligned_cols=36 Identities=17% Similarity=0.401 Sum_probs=28.4
Q ss_pred eeecCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q psy1891 4 TLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEAL 39 (158)
Q Consensus 4 ~~~~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~L 39 (158)
+.++|-.|.|.+.+.++|+++......+.|......
T Consensus 118 a~lfgg~~~~~~~a~i~g~~~~~~~~~~~r~~~~~~ 153 (193)
T PF06738_consen 118 ALLFGGSWIDMIVAFILGLLVGLLRQLLSRRRLNSF 153 (193)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 345788899999999999999988888776654443
No 60
>PF05105 Phage_holin_4: Holin family ; InterPro: IPR006480 This group of sequences describe one of the many mutually dissimilar families of holins, phage proteins that act together with lytic enzymes in bacterial lysis. This family includes, besides phage holins, the protein TcdE/UtxA involved in toxin secretion in Clostridium difficile and related species []. This entry is represented by the Bacteriophage phi-29, Gp14 (holin). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.71 E-value=1.9e+02 Score=20.27 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHH
Q psy1891 14 AVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKIN 53 (158)
Q Consensus 14 ~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~ 53 (158)
++...++..+++..+++++ ||...+ |-..|+...+.++
T Consensus 75 ~~~~~~~~~~i~~E~~SI~-EN~~~~-G~~iP~~l~~~l~ 112 (118)
T PF05105_consen 75 PFRTLVIIFYILNELISIL-ENLAEM-GVPIPKWLKKFLK 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHh-CCCchHHHHHHHH
Confidence 5666788888889988888 888774 7665644433333
No 61
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=30.70 E-value=73 Score=27.25 Aligned_cols=120 Identities=10% Similarity=0.115 Sum_probs=69.0
Q ss_pred ecCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEE
Q psy1891 6 YTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVD 85 (158)
Q Consensus 6 ~~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~ 85 (158)
.+++|++-++.++++++++.|.|+.++-+....++-- .++...+..++ ..++ +....++. .+|-.+-
T Consensus 104 ~~~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~l-~~~~~~~~m~~---~~~~-------~~k~~~~K--ILDTSvI 170 (356)
T COG4956 104 LLPIPFISTIIPVILTIILAYFGFQLADKKRDEFLRL-LNPNRREAMKK---EEEG-------EVKPKKPK--ILDTSVI 170 (356)
T ss_pred hCCccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHHh-cchhhHHHhhh---hhhh-------cccCCCCe--EeeeceE
Confidence 4589999999999999999999999999998888754 34433333222 0000 11112233 3555555
Q ss_pred eCCCcccc---chhhhhh--hHHHHHHHhhhcchHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhCC
Q psy1891 86 FDGRELTR---SYLDKQD--LNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYP 148 (158)
Q Consensus 86 vd~~l~v~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~i~~~iE~~I~~~~p 148 (158)
.|+..--- .++++.. +...+.|.|-..+.. ..+-+.-++|.+ ++. ++|++.+|
T Consensus 171 IDGRI~di~~TGFleG~iiiP~FVL~ELQ~iADss--D~lKR~RGRRGL----dIL----n~iqk~~~ 228 (356)
T COG4956 171 IDGRIADILQTGFLEGTIIIPQFVLLELQHIADSS--DDLKRNRGRRGL----DIL----NEIQKEDP 228 (356)
T ss_pred EcchHHHHHHhCCccceEeeeHHHHHHHHHHhhcc--chhhhhcccchh----HHH----HHHHhhCC
Confidence 56654210 3344432 677788877553321 122344466665 444 45556665
No 62
>cd02136 Nitroreductase Nitroreductase family. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=30.45 E-value=83 Score=23.16 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=32.0
Q ss_pred HHHHhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEEEE
Q psy1891 31 IVSSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVKGI 71 (158)
Q Consensus 31 l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr 71 (158)
.-|.|.+..-++.+|++.+++|.+.+...|.-.+.+..|..
T Consensus 6 ~~RrSvR~f~~~~v~~e~l~~il~~a~~aPs~~n~q~~~f~ 46 (178)
T cd02136 6 KSRHSVRAFLPDPVPRETIEEILAAAQRAPSGCNTQPWQVY 46 (178)
T ss_pred hhchhhhcCCCCCCCHHHHHHHHHHHHhCccccCCCCEEEE
Confidence 45788889899999999999999999888865554444443
No 63
>PRK11023 outer membrane lipoprotein; Provisional
Probab=29.50 E-value=52 Score=25.48 Aligned_cols=32 Identities=6% Similarity=-0.076 Sum_probs=25.8
Q ss_pred HhhhCCCCChHHHHHHHHHHhcCCceeeeeeEE
Q psy1891 37 EALVGRSIPDDYLDKINAELESDVMIRAIYDVK 69 (158)
Q Consensus 37 ~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lr 69 (158)
-.|+|.. ++++.++..+++.+.+||++|.++-
T Consensus 156 V~L~G~v-~~~e~~~a~~iA~~v~GVk~Vv~~~ 187 (191)
T PRK11023 156 VFLLGLV-TQREAKAAADIASRVSGVKRVTTAF 187 (191)
T ss_pred EEEEEEe-CHHHHHHHHHHHhcCCCeeEEeeee
Confidence 3578876 5677789999999999999988753
No 64
>PRK10557 hypothetical protein; Provisional
Probab=29.38 E-value=99 Score=24.03 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=24.1
Q ss_pred ecCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy1891 6 YTGSHIPDAVGSFLVGGILGCVAYFIVS 33 (158)
Q Consensus 6 ~~G~~~~D~i~ai~Ia~~I~~~a~~l~~ 33 (158)
.-|+..+.-++|++||.+++..+..++-
T Consensus 6 q~GfSLiElmIAm~Ig~illl~~~~~~~ 33 (192)
T PRK10557 6 QRGFSLLEVLLAMAIGSVLLLGAARFLP 33 (192)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999988877763
No 65
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.85 E-value=1.7e+02 Score=19.37 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=17.4
Q ss_pred HHHHHHHhHHhhhCCCCChHHHHHHHHHHhc
Q psy1891 28 AYFIVSSNIEALVGRSIPDDYLDKINAELES 58 (158)
Q Consensus 28 a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~ 58 (158)
|+.+.|+-..-.+... ||-..+.||....+
T Consensus 21 G~fiark~~~k~lk~N-Ppine~~iR~M~~q 50 (71)
T COG3763 21 GFFIARKQMKKQLKDN-PPINEEMIRMMMAQ 50 (71)
T ss_pred HHHHHHHHHHHHHhhC-CCCCHHHHHHHHHH
Confidence 4777777666555554 44445566655543
No 66
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=27.45 E-value=2.2e+02 Score=19.84 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEe
Q psy1891 134 GEIDRIEMKLRKKYPDIRHVDLE 156 (158)
Q Consensus 134 ~i~~~iE~~I~~~~p~~~~v~iE 156 (158)
..+++|-+.+.+.||++.++.+.
T Consensus 74 ~La~~ia~~i~~~~~~v~~v~v~ 96 (118)
T cd00534 74 TLAEEIADILLEDYPKVSAIKVK 96 (118)
T ss_pred HHHHHHHHHHHHhCCCceEEEEE
Confidence 56777777888889998877664
No 67
>TIGR00526 folB_dom FolB domain. Two paralogous genes of E. coli, folB (dihydroneopterin aldolase) and folX (d-erythro-7,8-dihydroneopterin triphosphate epimerase) are homologous to each other and homo-octameric. In Pneumocystis carinii, a multifunctional enzyme of folate synthesis has an N-terminal region active as dihydroneopterin aldolase. This region consists of two tandem sequences each homologous to folB and forms tetramers.
Probab=26.97 E-value=2.2e+02 Score=19.81 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEe
Q psy1891 134 GEIDRIEMKLRKKYPDIRHVDLE 156 (158)
Q Consensus 134 ~i~~~iE~~I~~~~p~~~~v~iE 156 (158)
..+++|-+.+.+.||.+..|.+.
T Consensus 74 ~la~~ia~~i~~~~~~v~~v~v~ 96 (118)
T TIGR00526 74 TLAKSVSEVVLDDYQKVTEVELE 96 (118)
T ss_pred HHHHHHHHHHHHhCCCceEEEEE
Confidence 66788888899999988877664
No 68
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=26.76 E-value=85 Score=21.85 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhCCCee
Q psy1891 134 GEIDRIEMKLRKKYPDIR 151 (158)
Q Consensus 134 ~i~~~iE~~I~~~~p~~~ 151 (158)
+.-+.+|.+|+++||+..
T Consensus 20 eTyeWL~aal~RKyp~~~ 37 (93)
T PF07315_consen 20 ETYEWLEAALKRKYPDQP 37 (93)
T ss_dssp HHHHHHHHHHHHH-TTS-
T ss_pred hHHHHHHHHHhCcCCCCc
Confidence 667899999999999853
No 69
>cd00365 HMG-CoA_reductase Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR) is a tightly regulated enzyme, which catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals, this is the rate limiting committed step in cholesterol biosynthesis. Bacteria, such as Pseudomonas mevalonii, which rely solely on mevalonate for their carbon source, catalyze the reverse reaction, using an NAD-dependent HMGR to deacetylate mevalonate into 3-hydroxy-3-methylglutaryl-CoA. There are two classes of HMGR: class I enzymes which are found predominantly in eukaryotes and contain N-terminal membrane regions and class II enzymes which are found primarily in prokaryotes and are soluble as they lack the membrane region. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR
Probab=26.74 E-value=4.3e+02 Score=22.99 Aligned_cols=42 Identities=14% Similarity=0.036 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCce-----eeeeeEEEEEecCceEEEEEEEEeCCCc
Q psy1891 48 YLDKINAELESDVMI-----RAIYDVKGIQMGNSLIRYKAEVDFDGRE 90 (158)
Q Consensus 48 ~~~~I~~~i~~~~gV-----~~vh~lrtr~~G~~~i~v~l~v~vd~~l 90 (158)
..++|++..++.... -++.++..|..|+. +.+++.++..+-|
T Consensus 128 ~~~~i~~~a~~~~~~~~~rgggl~~i~~~~~~~~-v~l~~~~dtgDAM 174 (376)
T cd00365 128 GKDEIIELANRKDQLLNSLGGGCRDIEVHTFGPM-LVAHLIVDVGDAM 174 (376)
T ss_pred hHHHHHHHHhhhCcchhccCccceEEEEEeeCCE-EEEEEEEEccchh
Confidence 346677777665444 68889999988875 6677777655444
No 70
>PRK10568 periplasmic protein; Provisional
Probab=26.60 E-value=50 Score=25.80 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=26.7
Q ss_pred HhhhCCCCChHHHHHHHHHHhcCCceeeeee
Q psy1891 37 EALVGRSIPDDYLDKINAELESDVMIRAIYD 67 (158)
Q Consensus 37 ~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~ 67 (158)
-.|+|...++...+...+++.+.|||.+|.+
T Consensus 168 V~L~G~V~s~~e~~~A~~~A~~v~GV~~V~n 198 (203)
T PRK10568 168 VQLSGTVDSQAQSDRAESIAKAVDGVKSVKN 198 (203)
T ss_pred EEEEEEECCHHHHHHHHHHHhcCCCccEEEE
Confidence 3578877788999999999999999999875
No 71
>TIGR01711 gspJ general secretion pathway protein J. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=26.55 E-value=1.2e+02 Score=23.35 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=25.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy1891 8 GSHIPDAVGSFLVGGILGCVAYFIVSSNIE 37 (158)
Q Consensus 8 G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~ 37 (158)
|+..+.-+++++|+.++...++..+....+
T Consensus 2 GFTLiEllval~I~ail~~~~~~~~~~~~~ 31 (192)
T TIGR01711 2 GFTLLELLVAIAIFASLSLGAYQVLDSVMQ 31 (192)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999998876443
No 72
>PRK00341 hypothetical protein; Provisional
Probab=26.36 E-value=2.2e+02 Score=19.45 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=28.4
Q ss_pred hCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCce-EEEEEEEEe
Q psy1891 40 VGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSL-IRYKAEVDF 86 (158)
Q Consensus 40 ld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~-i~v~l~v~v 86 (158)
||.+ .++..+.|.+++..+... +...+.+|.+.... ..+.+.+.+
T Consensus 23 iG~~-~~~~~~~V~~iv~~~~~~-~~~~~~~k~Ss~GkY~S~tv~i~~ 68 (91)
T PRK00341 23 IGDT-GVGFKDLVIEILQKHADV-DLSTLAERQSSNGKYTTVQLHIVA 68 (91)
T ss_pred EEcC-chhHHHHHHHHHHHhCCC-cccceeeccCCCCEEEEEEEEEEE
Confidence 4544 677888999999876432 35666777775553 445555544
No 73
>PRK09579 multidrug efflux protein; Reviewed
Probab=25.81 E-value=6.4e+02 Score=24.71 Aligned_cols=71 Identities=10% Similarity=-0.068 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhh--------------CCCCChHHHHHHHHHHhc-CCceeeeeeEEEEEecCce
Q psy1891 13 DAVGSFLVGGILGCVAYFIVSSNIEALV--------------GRSIPDDYLDKINAELES-DVMIRAIYDVKGIQMGNSL 77 (158)
Q Consensus 13 D~i~ai~Ia~~I~~~a~~l~~~s~~~Ll--------------d~~~~~~~~~~I~~~i~~-~~gV~~vh~lrtr~~G~~~ 77 (158)
=|+..+++.+.++..|+..+.+--..+. -.+-|++..+.|.+-++. ..+|.++.++++...-..
T Consensus 10 ~~~~~~~l~~~l~i~G~~~~~~lp~~~~P~~~~p~v~V~t~~pGaspe~vE~~Vt~plE~~L~~v~gi~~i~S~S~~G~- 88 (1017)
T PRK09579 10 RPVLASVVSLLIVLLGFQAWSKLQIRQYPQMENALITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYMTSVSRQNF- 88 (1017)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCHhhCCCCCCcEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCe-
Confidence 3566777777777777666655444332 123355555666655554 456777788887765443
Q ss_pred EEEEEEE
Q psy1891 78 IRYKAEV 84 (158)
Q Consensus 78 i~v~l~v 84 (158)
..+.++.
T Consensus 89 s~I~v~f 95 (1017)
T PRK09579 89 SIISIYA 95 (1017)
T ss_pred EEEEEEE
Confidence 2344443
No 74
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=25.51 E-value=1.8e+02 Score=18.22 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhCCCeeEEEE
Q psy1891 134 GEIDRIEMKLRKKYPDIRHVDL 155 (158)
Q Consensus 134 ~i~~~iE~~I~~~~p~~~~v~i 155 (158)
.+.++++.+++ ..|++..|.|
T Consensus 52 ~l~~~i~~~l~-~l~gv~~V~V 72 (72)
T PF01883_consen 52 PLREEIREALK-ALPGVKSVKV 72 (72)
T ss_dssp HHHHHHHHHHH-TSTT-SEEEE
T ss_pred HHHHHHHHHHH-hCCCCceEeC
Confidence 57889999998 8888776654
No 75
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=25.15 E-value=1.7e+02 Score=17.88 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEe
Q psy1891 47 DYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDF 86 (158)
Q Consensus 47 ~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~v 86 (158)
+..+++.+.+.+.|+|..++. -+|+.. +-+++.+
T Consensus 10 ~~~~~~~~~l~~~p~V~~~~~----vtG~~d--~~~~v~~ 43 (74)
T PF01037_consen 10 DAYDEFAEALAEIPEVVECYS----VTGEYD--LILKVRA 43 (74)
T ss_dssp THHHHHHHHHHTSTTEEEEEE----ESSSSS--EEEEEEE
T ss_pred chHHHHHHHHHcCCCEEEEEE----EeCCCC--EEEEEEE
Confidence 357899999999999999985 478775 4455444
No 76
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=24.29 E-value=2.4e+02 Score=20.18 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhH------------HhhhCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCc
Q psy1891 17 SFLVGGILGCVAYFIVSSNI------------EALVGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNS 76 (158)
Q Consensus 17 ai~Ia~~I~~~a~~l~~~s~------------~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~ 76 (158)
.++|++++++--..+.|.+. ...=| .+|+.-....++++...|= .+ .++..+-+..
T Consensus 4 ~ilia~~li~~Lv~~~r~~~~vf~i~f~dG~l~~~KG-~iP~~F~~~c~dIa~~~~~-~G--~ik~~r~~~g 71 (108)
T PF12321_consen 4 VILIAAALIFWLVFVDRRGLPVFEIHFKDGRLRVHKG-HIPPGFLHNCRDIARRYPF-RG--TIKVYRQRGG 71 (108)
T ss_pred HHHHHHHHHHHHHHccccCceEEEEEEECCcEEEEcC-CCChHHHHHHHHHHHhCCC-cE--EEEEEEeCCc
Confidence 45666666655555555221 11123 4789999999999988763 22 2444444443
No 77
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=24.15 E-value=1.1e+02 Score=19.04 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1891 15 VGSFLVGGILGCVAYFIVSS 34 (158)
Q Consensus 15 i~ai~Ia~~I~~~a~~l~~~ 34 (158)
+++++|.++|+..+|.++-+
T Consensus 10 ~~~~~I~~lIgfity~mfV~ 29 (53)
T PF13131_consen 10 LFTIFIFFLIGFITYKMFVK 29 (53)
T ss_pred HHHHHHHHHHHHHHHHhhee
Confidence 45677778888888877643
No 78
>cd02151 NADPH_oxidoreductase_2 NAD(P)H:flavin oxidoreductase-like family 2. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=23.77 E-value=95 Score=22.64 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=28.8
Q ss_pred HHHHhHHhhhCCCCChHHHHHHHHHHhcCCceeeee
Q psy1891 31 IVSSNIEALVGRSIPDDYLDKINAELESDVMIRAIY 66 (158)
Q Consensus 31 l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh 66 (158)
.-|.|.+...++.+|++.+++|.+.....|.-.+.+
T Consensus 6 ~~RrSvR~f~~~~v~~e~l~~il~aa~~aPs~~n~Q 41 (162)
T cd02151 6 KKRRSIRKFTDEPVEKEKVDALLKAALRAPSSRNRR 41 (162)
T ss_pred HhhchhhcCCCCCCCHHHHHHHHHHHHhCcCCCCCC
Confidence 357788888899999999999999998877644433
No 79
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=23.69 E-value=2e+02 Score=18.09 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHhcCCceeeeeeEEEEEecC-----ceEEEEEEEEeCCCc
Q psy1891 45 PDDYLDKINAELESDVMIRAIYDVKGIQMGN-----SLIRYKAEVDFDGRE 90 (158)
Q Consensus 45 ~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~-----~~i~v~l~v~vd~~l 90 (158)
.|..+.+|.+.+.+.. .++.+++....+. ..+.+.+.+.++++.
T Consensus 9 ~~Giv~~it~~l~~~~--~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~ 57 (81)
T cd04869 9 RPGIVHEVTQFLAQRN--INIEDLSTETYSAPMSGTPLFKAQATLALPAGT 57 (81)
T ss_pred CCCHHHHHHHHHHHcC--CCeEEeEeeeecCCCCCcceEEEEEEEecCCCC
Confidence 4567888999887764 3677777766651 236677777777544
No 80
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=23.59 E-value=1.8e+02 Score=17.59 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy1891 14 AVGSFLVGGILGCVAYFIVSSN 35 (158)
Q Consensus 14 ~i~ai~Ia~~I~~~a~~l~~~s 35 (158)
.+++.++++.+..-.|+..|++
T Consensus 24 ~ig~avL~v~V~i~v~kwiRra 45 (46)
T PF10389_consen 24 TIGGAVLGVIVGIAVYKWIRRA 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4666777777777777777765
No 81
>smart00749 BON bacterial OsmY and nodulation domain.
Probab=23.58 E-value=1.4e+02 Score=17.31 Aligned_cols=32 Identities=9% Similarity=0.008 Sum_probs=24.9
Q ss_pred HhhhCCCCChHHHHHHHHHHhcCCceeeeeeE
Q psy1891 37 EALVGRSIPDDYLDKINAELESDVMIRAIYDV 68 (158)
Q Consensus 37 ~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~l 68 (158)
..||+...|.+..+.........+++..+.+.
T Consensus 28 vvL~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 59 (62)
T smart00749 28 VVLLGGVVDNAEAAAAAAAAAVVGGVKVVVVN 59 (62)
T ss_pred EEEeeecCCHHHHHHHHHHhhcCCCeEEEEEE
Confidence 35788877888888888888888888777643
No 82
>cd02150 NADPH_oxidoreductase_1 NAD(P)H:flavin oxidoreductase-like family 1. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=23.37 E-value=1e+02 Score=22.59 Aligned_cols=38 Identities=8% Similarity=0.113 Sum_probs=30.1
Q ss_pred HHHhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEE
Q psy1891 32 VSSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVK 69 (158)
Q Consensus 32 ~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lr 69 (158)
-|.|.+..-++.+|++.+++|.+.....|...+.+..|
T Consensus 6 ~RrS~R~f~~~~i~~e~l~~il~~a~~aPs~~n~qp~~ 43 (166)
T cd02150 6 TRRSVRKYTDEPVSDELIEKILRAAMAAPSAGNQQPWR 43 (166)
T ss_pred hcchhhcCCCCCCCHHHHHHHHHHHhhCCCCCCCCCeE
Confidence 47788888888999999999999999888655544433
No 83
>KOG1484|consensus
Probab=23.28 E-value=1.4e+02 Score=25.75 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=32.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhC
Q psy1891 7 TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVG 41 (158)
Q Consensus 7 ~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld 41 (158)
+|+..+..++|+.=+++....++.++.|++.-|++
T Consensus 97 yG~~r~evLagF~n~vflvl~a~fi~~Es~eRl~~ 131 (354)
T KOG1484|consen 97 YGYGRIEVLAGFVNGVFLVLIAFFIFSESVERLFD 131 (354)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC
Confidence 47778999999999999999999999999999997
No 84
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=23.10 E-value=1e+02 Score=18.59 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHhcCCceeee
Q psy1891 46 DDYLDKINAELESDVMIRAI 65 (158)
Q Consensus 46 ~~~~~~I~~~i~~~~gV~~v 65 (158)
+.-.++|.+.+.+.|||.++
T Consensus 10 ~~C~~~v~~~l~~~~GV~~v 29 (62)
T PF00403_consen 10 EGCAKKVEKALSKLPGVKSV 29 (62)
T ss_dssp HHHHHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHHHhcCCCCcEE
Confidence 44567899999999998665
No 85
>PF12669 P12: Virus attachment protein p12 family
Probab=22.98 E-value=1.2e+02 Score=19.05 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhHH
Q psy1891 15 VGSFLVGGILGCVA-YFIVSSNIE 37 (158)
Q Consensus 15 i~ai~Ia~~I~~~a-~~l~~~s~~ 37 (158)
|.+++|.++++|.+ ..++|+..+
T Consensus 3 II~~Ii~~~~~~v~~r~~~k~~K~ 26 (58)
T PF12669_consen 3 IIGIIILAAVAYVAIRKFIKDKKK 26 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555555566654 555555443
No 86
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=22.98 E-value=2.6e+02 Score=19.11 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhCCCeeEEEEe
Q psy1891 136 IDRIEMKLRKKYPDIRHVDLE 156 (158)
Q Consensus 136 ~~~iE~~I~~~~p~~~~v~iE 156 (158)
.+.+|..|+ .++++..+.+|
T Consensus 64 td~lee~i~-~ve~V~svev~ 83 (88)
T TIGR00489 64 TEAAEESLS-GIEGVESVEVT 83 (88)
T ss_pred hHHHHHHHh-cCCCccEEEEE
Confidence 477888887 46787777765
No 87
>PF04917 Shufflon_N: Bacterial shufflon protein, N-terminal constant region; InterPro: IPR007001 This domain represents the high-similarity N-terminal constant region shared by shufflon proteins. Shufflon proteins are created as a result of a clustered inversion region. The proteins retain a constant N-terminal domain, with different C-terminal domains.
Probab=22.79 E-value=1.4e+02 Score=25.74 Aligned_cols=35 Identities=9% Similarity=0.023 Sum_probs=29.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCC
Q psy1891 8 GSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGR 42 (158)
Q Consensus 8 G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~ 42 (158)
||..++.+++++|..+++..++....+........
T Consensus 7 Gf~llE~~~aL~I~~~~~~~~~~~~~~~~~~~~~~ 41 (356)
T PF04917_consen 7 GFTLLELIIALAILALMAPGGAQWMSDYLEDQQWQ 41 (356)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999998888877766554
No 88
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=22.54 E-value=1e+02 Score=26.59 Aligned_cols=21 Identities=52% Similarity=0.874 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCCeeEEEEe
Q psy1891 136 IDRIEMKLRKKYPDIRHVDLE 156 (158)
Q Consensus 136 ~~~iE~~I~~~~p~~~~v~iE 156 (158)
+++||+.|++++|++.+|.++
T Consensus 145 ~~~ie~~l~~~~~~i~WV~i~ 165 (385)
T PF06898_consen 145 CEEIEKKLRKQFPDISWVGIE 165 (385)
T ss_pred HHHHHHHHHhhCCCeEEEEEE
Confidence 689999999999999998775
No 89
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=22.48 E-value=2e+02 Score=19.01 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhCCCeeEEEE
Q psy1891 134 GEIDRIEMKLRKKYPDIRHVDL 155 (158)
Q Consensus 134 ~i~~~iE~~I~~~~p~~~~v~i 155 (158)
+++++|+.+-++-||+...+.|
T Consensus 17 ~L~~eI~~~f~kLYP~~~~~~I 38 (73)
T PF10407_consen 17 QLKEEIEERFKKLYPNEPELEI 38 (73)
T ss_pred HHHHHHHHHHHHHCCCCCCceE
Confidence 6789999999999998764433
No 90
>cd02062 Nitro_FMN_reductase Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.
Probab=22.05 E-value=95 Score=21.01 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=32.8
Q ss_pred HHhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEe
Q psy1891 33 SSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVKGIQM 73 (158)
Q Consensus 33 ~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~ 73 (158)
|.|.+...++.++++.++++.+.....|.-.+....+..-.
T Consensus 4 RrS~R~f~~~~i~~~~l~~l~~~~~~aPs~~n~qp~~~~~v 44 (122)
T cd02062 4 RRSVRKFTDEPVPEEVLEKILEAARYAPSGGNLQPWRFVVV 44 (122)
T ss_pred ceecccCCCCCCCHHHHHHHHHHHHhCCCcCCCCCEEEEEE
Confidence 56677777889999999999999999887666676666554
No 91
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=21.97 E-value=2.8e+02 Score=19.22 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEe
Q psy1891 134 GEIDRIEMKLRKKYPDIRHVDLE 156 (158)
Q Consensus 134 ~i~~~iE~~I~~~~p~~~~v~iE 156 (158)
..+++|-+.+...||.+.++.+.
T Consensus 73 ~la~~Ia~~i~~~~~~v~~v~v~ 95 (116)
T TIGR00525 73 TVAYRIADRLFADFPQVQRVKVR 95 (116)
T ss_pred HHHHHHHHHHHHHCCCceEEEEE
Confidence 67888888999999988877664
No 92
>PF04865 Baseplate_J: Baseplate J-like protein; InterPro: IPR006949 The temperate bacteriophage P2 has four defined tail genes: V, J, W and I. Their order is the late gene promoter, VWJI, followed by the tail fibre genes H and G and then a transcription terminator. BAP V protein is the small spike at the tip of the tail and basal plate assembly protein J lies at the edge of the baseplate []. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred.
Probab=21.83 E-value=3.9e+02 Score=20.80 Aligned_cols=34 Identities=12% Similarity=-0.128 Sum_probs=22.0
Q ss_pred HHHHHHHHhcC-CceeeeeeEEEEEecCceEEEEEEEE
Q psy1891 49 LDKINAELESD-VMIRAIYDVKGIQMGNSLIRYKAEVD 85 (158)
Q Consensus 49 ~~~I~~~i~~~-~gV~~vh~lrtr~~G~~~i~v~l~v~ 85 (158)
...++..+++. |||.++.=+..+. |+.. +++-|.
T Consensus 121 ~~dy~~~a~~~~~gV~~v~v~~~~~-~~G~--V~v~v~ 155 (243)
T PF04865_consen 121 ADDYEYWALSVSPGVADVKVYPNWN-GPGT--VDVYVL 155 (243)
T ss_pred HHHHHHHHHHhCCCceEEEEecCCC-CCCE--EEEEEc
Confidence 34677778787 8888777555554 7763 555543
No 93
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=21.61 E-value=1e+02 Score=23.95 Aligned_cols=20 Identities=15% Similarity=0.389 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCeeEEEEe
Q psy1891 137 DRIEMKLRKKYPDIRHVDLE 156 (158)
Q Consensus 137 ~~iE~~I~~~~p~~~~v~iE 156 (158)
++|.+.|.+.+|++.|.++.
T Consensus 61 ekIRk~i~~~vp~~khafi~ 80 (174)
T TIGR00334 61 EKIRKKIEQHLPGYENCFIP 80 (174)
T ss_pred HHHHHHHHHHCCCCeEEeee
Confidence 68889999999999998874
No 94
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=21.39 E-value=3.3e+02 Score=19.83 Aligned_cols=33 Identities=24% Similarity=0.097 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEE
Q psy1891 46 DDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKA 82 (158)
Q Consensus 46 ~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l 82 (158)
+...+++.+.+.+.|+|..++.+ .|++.+.+.+
T Consensus 80 ~~~~~~~~~~l~~~p~V~~~~~~----tG~~dl~~~v 112 (153)
T PRK11179 80 AKDYPSALAKLESLDEVVEAYYT----TGHYSIFIKV 112 (153)
T ss_pred cccHHHHHHHHhCCCCEEEEEEc----ccCCCEEEEE
Confidence 44567888889999999999865 4776443443
No 95
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=21.11 E-value=1.6e+02 Score=18.13 Aligned_cols=19 Identities=21% Similarity=0.579 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1891 14 AVGSFLVGGILGCVAYFIV 32 (158)
Q Consensus 14 ~i~ai~Ia~~I~~~a~~l~ 32 (158)
-++|+++|.+++..|+-++
T Consensus 15 rigGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 15 RIGGLIFAGVLFILGILII 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHH
Confidence 4688888888888888664
No 96
>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.
Probab=20.88 E-value=1.3e+02 Score=21.46 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=27.3
Q ss_pred HHHhHHhhhCCCCChHHHHHHHHHHhcCCceee
Q psy1891 32 VSSNIEALVGRSIPDDYLDKINAELESDVMIRA 64 (158)
Q Consensus 32 ~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~ 64 (158)
-|.|++..-++.+|++.+++|.+....-|...+
T Consensus 6 ~RrSvR~f~~~~v~~e~l~~il~aA~~APs~~n 38 (160)
T cd02135 6 TRRSIKKLTLPAPDREQLEQILEAAARAPDHGK 38 (160)
T ss_pred hcccchhcCCCCCCHHHHHHHHHHHHhCCCcCC
Confidence 467788888999999999999999988886444
No 97
>PF09047 MEF2_binding: MEF2 binding; InterPro: IPR015134 The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription []. ; PDB: 1N6J_G.
Probab=20.80 E-value=1e+02 Score=17.20 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=15.2
Q ss_pred CCCChHHHHHHHHHHhcCCceeeee
Q psy1891 42 RSIPDDYLDKINAELESDVMIRAIY 66 (158)
Q Consensus 42 ~~~~~~~~~~I~~~i~~~~gV~~vh 66 (158)
.++++|.-++++..+.+...-.+|+
T Consensus 7 gsiseetkqklk~~ils~qsaanv~ 31 (35)
T PF09047_consen 7 GSISEETKQKLKSAILSAQSAANVK 31 (35)
T ss_dssp S---HHHHHHHHHHHHTT-STT---
T ss_pred CcccHHHHHHHHHHHhhhHhhhhhh
Confidence 3689999999999999876655655
No 98
>COG3945 Uncharacterized conserved protein [Function unknown]
Probab=20.45 E-value=1.2e+02 Score=23.77 Aligned_cols=43 Identities=12% Similarity=-0.021 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEE
Q psy1891 25 GCVAYFIVSSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVK 69 (158)
Q Consensus 25 ~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lr 69 (158)
+.-++.+++.+....+...++++.+..|.+.+.+.. .+||+-+
T Consensus 20 IlraL~iLr~~~~~~~~g~i~y~~v~~iidFi~nfa--DkcHH~K 62 (189)
T COG3945 20 ILRALSILRKALDLIKNGPIDYSDVKEIIDFIRNFA--DKCHHGK 62 (189)
T ss_pred HHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH--HhccchH
Confidence 456788999999888888899999999999998864 4788765
No 99
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=20.45 E-value=4.1e+02 Score=20.57 Aligned_cols=45 Identities=7% Similarity=0.079 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhcCCceeeeeeEEEEEecC-----ceEEEEEEEEeCCCccc
Q psy1891 46 DDYLDKINAELESDVMIRAIYDVKGIQMGN-----SLIRYKAEVDFDGRELT 92 (158)
Q Consensus 46 ~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~-----~~i~v~l~v~vd~~l~v 92 (158)
|..+.++.+.+.+.. .++-+++|+..+. ..+.+.+.+.+|++..+
T Consensus 106 PGIV~~vT~~la~~~--iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~ 155 (190)
T PRK11589 106 PHLIERFTALFDSHH--MNIAELVSRTQPAEGERPAQLHIQITAHSPASQDA 155 (190)
T ss_pred CCHHHHHHHHHHHcC--CChhheEEeeecCCCCCcccEEEEEEEEcCCCCCH
Confidence 557778888776653 5888999997763 23677888888888643
No 100
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=20.09 E-value=1e+02 Score=20.16 Aligned_cols=18 Identities=22% Similarity=0.586 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhCCCee
Q psy1891 134 GEIDRIEMKLRKKYPDIR 151 (158)
Q Consensus 134 ~i~~~iE~~I~~~~p~~~ 151 (158)
+..+|+..+++++||+..
T Consensus 51 k~~~r~~~~Le~~~p~a~ 68 (71)
T cd04910 51 KTIKRLTEDLENRFPNAE 68 (71)
T ss_pred HHHHHHHHHHHHhCccCc
Confidence 457899999999999864
No 101
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=20.08 E-value=8.4e+02 Score=23.96 Aligned_cols=60 Identities=5% Similarity=-0.009 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhh--------------CCCCChHHHHHHHHHHhc-CCceeeeeeEEEEEe
Q psy1891 14 AVGSFLVGGILGCVAYFIVSSNIEALV--------------GRSIPDDYLDKINAELES-DVMIRAIYDVKGIQM 73 (158)
Q Consensus 14 ~i~ai~Ia~~I~~~a~~l~~~s~~~Ll--------------d~~~~~~~~~~I~~~i~~-~~gV~~vh~lrtr~~ 73 (158)
|+..++..++++..|+--+..--..++ ..+-|++..+.|.+-++. ..++.++.++++..+
T Consensus 9 p~~~~ll~~~l~~~G~~s~~~lp~~~~P~i~~p~v~V~t~ypGasp~~vE~~Vt~plE~~l~~v~gv~~i~S~S~ 83 (1037)
T PRK10555 9 PIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSS 83 (1037)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCHhhCCCCCCcEEEEEEecCCCCHHHHHHHHhHHHHHHhcCCCCceEEEEEec
Confidence 455666666666666555544333332 223355666666665555 567778888888764
Done!