Query psy1891
Match_columns 158
No_of_seqs 161 out of 1375
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 18:55:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 99.9 9.8E-27 3.4E-31 191.7 12.1 116 5-158 173-289 (306)
2 3h90_A Ferrous-iron efflux pum 99.9 1.6E-25 5.6E-30 182.0 15.4 116 5-158 164-280 (283)
3 3byp_A CZRB protein; membrane 99.7 2.6E-17 8.9E-22 113.1 11.0 82 38-157 1-85 (94)
4 2zzt_A Putative uncharacterize 99.7 3.7E-16 1.3E-20 110.4 9.7 80 40-157 1-84 (107)
5 3h90_A Ferrous-iron efflux pum 85.8 1 3.6E-05 35.5 5.0 37 7-43 66-102 (283)
6 3j1z_P YIIP, cation efflux fam 85.5 1.2 4.2E-05 35.7 5.3 38 7-44 75-112 (306)
7 3ce8_A Putative PII-like nitro 76.9 16 0.00056 25.5 8.0 38 40-77 26-63 (120)
8 2dbb_A Putative HTH-type trans 56.9 45 0.0015 23.0 9.1 42 43-90 76-117 (151)
9 2r4f_A 3-hydroxy-3-methylgluta 52.8 97 0.0033 26.3 9.4 44 46-90 178-221 (441)
10 2cvi_A 75AA long hypothetical 50.9 42 0.0014 20.8 5.6 32 48-83 14-45 (83)
11 2djw_A Probable transcriptiona 48.9 30 0.001 21.9 4.6 35 45-83 11-45 (92)
12 2zbc_A 83AA long hypothetical 46.6 47 0.0016 20.2 6.0 34 47-86 13-46 (83)
13 1n6j_G Calcineurin-binding pro 43.5 21 0.00072 19.1 2.5 26 42-67 7-32 (35)
14 1ghh_A DINI, DNA-damage-induci 42.4 35 0.0012 22.1 4.0 23 134-156 20-43 (81)
15 1sql_A Dihydroneopterin aldola 40.6 50 0.0017 23.4 5.1 23 134-156 94-116 (146)
16 2z5i_A TM, general control pro 40.3 31 0.001 20.4 3.2 22 124-145 9-30 (52)
17 2cg4_A Regulatory protein ASNC 39.7 51 0.0017 22.7 5.0 33 47-83 80-112 (152)
18 1z9w_A DHNA, dihydroneopterin 36.4 1E+02 0.0036 21.2 8.6 22 134-156 75-96 (133)
19 2z51_A NIFU-like protein 2, ch 34.2 57 0.0019 23.6 4.5 20 135-154 133-152 (154)
20 2l16_A SEC-independent protein 31.9 44 0.0015 21.4 3.2 59 6-64 2-72 (78)
21 2cfx_A HTH-type transcriptiona 30.5 69 0.0024 21.9 4.4 35 45-83 74-108 (144)
22 3lax_A Phenylacetate-coenzyme 27.1 1.3E+02 0.0043 19.3 10.3 39 51-90 18-56 (109)
23 3i4p_A Transcriptional regulat 27.0 1.6E+02 0.0055 20.5 8.3 33 46-82 76-108 (162)
24 2cyy_A Putative HTH-type trans 25.0 1.7E+02 0.0057 19.9 7.2 36 44-83 75-110 (151)
25 3zzp_A TS9, ribosomal protein 24.6 84 0.0029 19.8 3.6 54 34-91 4-57 (77)
26 1xg8_A Hypothetical protein SA 24.1 67 0.0023 22.0 3.1 22 134-155 30-55 (111)
27 1ifk_A Inovirus; helical virus 23.6 1.1E+02 0.0037 18.1 3.5 21 17-37 28-48 (51)
28 3o1k_A Dihydroneopterin aldola 22.9 1.4E+02 0.0049 20.5 4.9 22 134-156 89-110 (132)
29 1ifl_A Inovirus; helical virus 22.3 1.2E+02 0.004 18.0 3.5 21 17-37 30-50 (53)
30 2pn6_A ST1022, 150AA long hypo 21.8 1.2E+02 0.004 20.6 4.3 34 46-83 75-108 (150)
31 1th5_A NIFU1; iron-sulfur clus 21.1 64 0.0022 20.4 2.4 18 136-153 53-70 (74)
32 2e1c_A Putative HTH-type trans 21.0 2.3E+02 0.0077 20.0 7.2 36 44-83 95-130 (171)
33 3arc_H Photosystem II reaction 20.9 83 0.0028 19.5 2.8 34 8-42 23-56 (65)
34 2ko1_A CTR148A, GTP pyrophosph 20.2 1.2E+02 0.004 18.3 3.6 25 44-68 54-78 (88)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=99.94 E-value=9.8e-27 Score=191.70 Aligned_cols=116 Identities=16% Similarity=0.258 Sum_probs=108.3
Q ss_pred eecCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEE
Q psy1891 5 LYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEV 84 (158)
Q Consensus 5 ~~~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v 84 (158)
.++||+|+||++|++||++|++.||+++|++.+.|||+++|++..++|++.+++.|||.++|++|+|++|++ +++++|+
T Consensus 173 ~~~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~i~~~~~V~~vh~l~~~~~G~~-~~v~~hi 251 (306)
T 3j1z_P 173 SQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQAGKT-VFIQFHL 251 (306)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSTTBCCCCCBCCEEETTE-EEEEECC
T ss_pred HHhCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhcCCCcceeeeEEEEEECCc-EEEEEEE
Confidence 357999999999999999999999999999999999999999999999999999999999999999999998 6899999
Q ss_pred EeCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhCCCee-EEEEeeC
Q psy1891 85 DFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIR-HVDLEVL 158 (158)
Q Consensus 85 ~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~i~~~iE~~I~~~~p~~~-~v~iE~~ 158 (158)
++|+++|+ +++|++++++|++|+++||..+ .||+||.
T Consensus 252 ~v~~~~sl-------------------------------------~eah~i~~~ie~~l~~~~~~~~v~IhveP~ 289 (306)
T 3j1z_P 252 ELDGNLSL-------------------------------------NEAHSITDTTGLRVKAAFEDAEVIIHQDPV 289 (306)
T ss_dssp EECTTSBH-------------------------------------HHHHHHHHHHHHHHHHHSTTCEEEECCEET
T ss_pred EECCCCCH-------------------------------------HHHHHHHHHHHHHHHhhCCCCeEEEEeCCC
Confidence 99999987 3568999999999999999876 4788984
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=99.93 E-value=1.6e-25 Score=182.05 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=107.9
Q ss_pred eecCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEE
Q psy1891 5 LYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEV 84 (158)
Q Consensus 5 ~~~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v 84 (158)
.++||+|+||++|++||++|+++||+++|++.+.|||+++|++..++|++.+++.|||.++|++|+|++|++ ..+++|+
T Consensus 164 ~~~g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~l~~~~~G~~-~~v~~hv 242 (283)
T 3h90_A 164 SWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPT-RFIQIHL 242 (283)
T ss_dssp CSTTSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSSSCSEEEEEEEEEETTE-EEEEEEE
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCcccceeeEEEEECCc-EEEEEEE
Confidence 467999999999999999999999999999999999999999999999999999999999999999999998 6899999
Q ss_pred EeCCCccccchhhhhhhHHHHHHHhhhcchHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhCCCee-EEEEeeC
Q psy1891 85 DFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIR-HVDLEVL 158 (158)
Q Consensus 85 ~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~i~~~iE~~I~~~~p~~~-~v~iE~~ 158 (158)
.+|+++|+ +++|++.+++|++++++||+.+ .||+||.
T Consensus 243 ~v~~~~~~-------------------------------------~~~~~i~~~i~~~l~~~~~~~~v~ih~ep~ 280 (283)
T 3h90_A 243 EMEDSLPL-------------------------------------VQAHMVADQVEQAILRRFPGSDVIIHQDPC 280 (283)
T ss_dssp ECCTTCBH-------------------------------------HHHHHHHHHHHHHHHHHSTTCEEEEEEECS
T ss_pred EeCCCCCH-------------------------------------HHHHHHHHHHHHHHHHHCCCCeEEEEeccC
Confidence 99999976 3567999999999999999865 3788983
No 3
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.73 E-value=2.6e-17 Score=113.06 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=69.7
Q ss_pred hhhCCCCChHHHHHHHHHHhcC--CceeeeeeEEEEEecCceEEEEEEEEeCCCccccchhhhhhhHHHHHHHhhhcchH
Q psy1891 38 ALVGRSIPDDYLDKINAELESD--VMIRAIYDVKGIQMGNSLIRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTID 115 (158)
Q Consensus 38 ~Lld~~~~~~~~~~I~~~i~~~--~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 115 (158)
.|||++++++..++|++.+.+. |||.++|++|+|++|+. +++++|+.+++++|+
T Consensus 1 ~Lld~~~~~~~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~-~~v~~hi~v~~~~~~----------------------- 56 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPR-SFLEFHLVVRGDTPV----------------------- 56 (94)
T ss_dssp -----CCCHHHHHHHHHHHHHHHTTTCSEEEEEEEEEETTE-EEEEEEEEECTTCBH-----------------------
T ss_pred CCcCCCCCHHHHHHHHHHHHhcCCCCceeeeeEEEEEECCc-EEEEEEEEECCCCcH-----------------------
Confidence 4899999999999999999999 99999999999999998 789999999999976
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhCCCee-EEEEee
Q psy1891 116 EMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIR-HVDLEV 157 (158)
Q Consensus 116 ~~~~~~~~~~~~~~~~~h~i~~~iE~~I~~~~p~~~-~v~iE~ 157 (158)
.++|++++++|+.|+++||... .|++||
T Consensus 57 --------------~~~h~i~~~ie~~l~~~~~~~~vtIh~ep 85 (94)
T 3byp_A 57 --------------EEAHRLCDELERALAQAFPGLQATIHVEP 85 (94)
T ss_dssp --------------HHHHHHHHHHHHHHHHHSTTEEEEEEEEE
T ss_pred --------------HHHHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 2457899999999999999874 367776
No 4
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.67 E-value=3.7e-16 Score=110.41 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=68.7
Q ss_pred hCCCCChH--HHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCCCccccchhhhhhhHHHHHHHhhhcchHHH
Q psy1891 40 VGRSIPDD--YLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEM 117 (158)
Q Consensus 40 ld~~~~~~--~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (158)
||++++++ ..++|++.+++.|||.++|++|+|++|+. +++++||.++++||+
T Consensus 1 md~~~~~~~~~~~~I~~~l~~~~gV~~vh~lr~r~~G~~-~~v~~hI~v~~~~sv------------------------- 54 (107)
T 2zzt_A 1 MDGMKRTELDMYDDIFAVLERFPNVHNPHRVRIRRVGTK-YFIEMDIEVDGKMSV------------------------- 54 (107)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSSCEEEEEEEEECSCC--CEEEEEEEECTTSCH-------------------------
T ss_pred CCCCCCccHHHHHHHHHHHHcCCCccccEEEEEEEECCc-EEEEEEEEECCCCCH-------------------------
Confidence 68888999 99999999999999999999999999987 689999999999986
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHhCCCeeE--EEEee
Q psy1891 118 EAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIRH--VDLEV 157 (158)
Q Consensus 118 ~~~~~~~~~~~~~~~h~i~~~iE~~I~~~~p~~~~--v~iE~ 157 (158)
.++|+++++||++|+++||++.+ |++||
T Consensus 55 ------------~eah~i~~~ie~~L~~~~~~i~~vtIhvEp 84 (107)
T 2zzt_A 55 ------------KDAHELTVKIRKEMLKRRDDIEDVTIHVEP 84 (107)
T ss_dssp ------------HHHHHHHHHHHHHHHHHCTTCCEEEEEEEE
T ss_pred ------------HHHHHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence 24578999999999999997654 67777
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=85.85 E-value=1 Score=35.45 Aligned_cols=37 Identities=14% Similarity=0.278 Sum_probs=34.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCC
Q psy1891 7 TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRS 43 (158)
Q Consensus 7 ~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~ 43 (158)
+|+..+.++++++.|++++..|+.++++++..|++..
T Consensus 66 yG~~r~E~l~~l~~~~~l~~~~~~i~~eai~~l~~~~ 102 (283)
T 3h90_A 66 FGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPT 102 (283)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSC
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5899999999999999999999999999999998754
No 6
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=85.53 E-value=1.2 Score=35.65 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=35.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCCCC
Q psy1891 7 TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSI 44 (158)
Q Consensus 7 ~G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~~~ 44 (158)
+|+..+.++++++.|++++..|+.++.+++..|+...+
T Consensus 75 yG~~R~E~l~al~~~~~l~~~~~~i~~eai~~l~~p~~ 112 (306)
T 3j1z_P 75 YGHGKAEPLAALAQSAFIMGSAFLLLFYGGERLLNPSP 112 (306)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCC
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCC
Confidence 58999999999999999999999999999999998653
No 7
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=76.86 E-value=16 Score=25.45 Aligned_cols=38 Identities=11% Similarity=-0.075 Sum_probs=31.1
Q ss_pred hCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCce
Q psy1891 40 VGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSL 77 (158)
Q Consensus 40 ld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~ 77 (158)
+..-.+|+..+.+++.+.+.||+.++---.++.+|...
T Consensus 26 I~aIIrP~kld~V~daL~~~~gi~G~TvseV~G~Grqk 63 (120)
T 3ce8_A 26 LVLIAQNDIKDDIVDTLIELEFLSGFSLGNICGFSREH 63 (120)
T ss_dssp EEEEEEGGGHHHHHHHHTTCTTCCCCEEEEEEEEECC-
T ss_pred EEEEeCHHHHHHHHHHHHhCCCCCcEEEEeeEEeCCCC
Confidence 33346788999999999999999988888888888775
No 8
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=56.94 E-value=45 Score=22.95 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=30.0
Q ss_pred CCChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCCCc
Q psy1891 43 SIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGRE 90 (158)
Q Consensus 43 ~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l 90 (158)
.+++...+++.+.+.+.|+|..+|.+ .|++.+. +++.+++++
T Consensus 76 ~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~d~~--~~v~~~~d~ 117 (151)
T 2dbb_A 76 SKVPSDADKVISEISDIEYVKSVEKG----VGRYNII--VRLLLPKDI 117 (151)
T ss_dssp ESSHHHHHHHHHHHTTCTTEEEEEEE----ESSCSEE--EEEEEESSH
T ss_pred EeCCCCHHHHHHHHHcCCCeEEEeEe----cCCCCEE--EEEEEcCCH
Confidence 35667778999999999999999964 7887544 444442343
No 9
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ...
Probab=52.84 E-value=97 Score=26.32 Aligned_cols=44 Identities=7% Similarity=0.080 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCCCc
Q psy1891 46 DDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGRE 90 (158)
Q Consensus 46 ~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l 90 (158)
|+..+++++...+...--++.+++++..|+. +++++.++.-+-|
T Consensus 178 ~~~~~~l~~~~~stsr~g~l~~i~~~~~g~~-l~lrf~~~TgDAM 221 (441)
T 2r4f_A 178 SEGFAVIKEAFDSTSRFARLQKLHTSIAGRN-LYIRFQSRSGDAM 221 (441)
T ss_dssp HHHHHHHHHHHHTTCSSCEECCCEEEEETTE-EEEEEEEECTTBC
T ss_pred hhhHHHHHHHhhhcccccccceEEEEeeCCE-EEEEEEEecchhh
Confidence 4566777777777766679999999999986 6788877665555
No 10
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=50.89 E-value=42 Score=20.78 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEE
Q psy1891 48 YLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAE 83 (158)
Q Consensus 48 ~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~ 83 (158)
..+++.+.+.+.|+|..++. -+|+..+.+.+.
T Consensus 14 ~~~~~~~~l~~~peV~e~~~----vtG~~D~ll~v~ 45 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAYV----VYGEYDLIVKVE 45 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEEE----CBSSCSEEEEEE
T ss_pred CHHHHHHHHhCCCCeeEEEE----EcccCCEEEEEE
Confidence 35788999999999999985 478875444443
No 11
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=48.87 E-value=30 Score=21.91 Aligned_cols=35 Identities=6% Similarity=0.097 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEE
Q psy1891 45 PDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAE 83 (158)
Q Consensus 45 ~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~ 83 (158)
++...+++.+.+.+.|+|..+|. -+|+..+.+.+.
T Consensus 11 ~~~~~~~~~~~l~~~peV~~~~~----vtG~~D~ll~v~ 45 (92)
T 2djw_A 11 RGNRVQALGEAIAELPQVAEVYS----VTGPYDLVALVR 45 (92)
T ss_dssp CGGGHHHHHHHHTTSTTEEEEEE----ESSSSSEEEEEE
T ss_pred cCCCHHHHHHHHhcCCCeEEEEE----eecCCCEEEEEE
Confidence 34457889999999999999984 578875444443
No 12
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=46.62 E-value=47 Score=20.18 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEe
Q psy1891 47 DYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDF 86 (158)
Q Consensus 47 ~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~v 86 (158)
...+++.+.+.+.|+|..+|. -+|+..+ -+++.+
T Consensus 13 ~~~~~~~~~l~~~peV~~~~~----vtG~~d~--l~~v~~ 46 (83)
T 2zbc_A 13 GGEDEVFERLKSMSEVTEVHV----VYGVYDI--VVKVEA 46 (83)
T ss_dssp TCHHHHHHHHTTCTTEEEEEE----CSSSCSE--EEEEEC
T ss_pred CCHHHHHHHHhCCCCeEEEEE----EeccCCE--EEEEEE
Confidence 345788999999999999984 4788754 445444
No 13
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=43.47 E-value=21 Score=19.08 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=19.7
Q ss_pred CCCChHHHHHHHHHHhcCCceeeeee
Q psy1891 42 RSIPDDYLDKINAELESDVMIRAIYD 67 (158)
Q Consensus 42 ~~~~~~~~~~I~~~i~~~~gV~~vh~ 67 (158)
.+.++|.-+++++.|.+...-.+||+
T Consensus 7 gsiseetkqklk~~ils~qsaanv~~ 32 (35)
T 1n6j_G 7 GSISEETKQKLKSAILSAQSAANVRK 32 (35)
T ss_dssp SCCCHHHHHHHHHHHHTTCSTTC---
T ss_pred CcccHHHHHHHHHHHHhhHhhhcccc
Confidence 36899999999999999877666664
No 14
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=42.40 E-value=35 Score=22.14 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhCCCee-EEEEe
Q psy1891 134 GEIDRIEMKLRKKYPDIR-HVDLE 156 (158)
Q Consensus 134 ~i~~~iE~~I~~~~p~~~-~v~iE 156 (158)
.+..+++++|.+.||++. .|.|-
T Consensus 20 aL~~EL~kRl~~~fpd~~~~V~Vr 43 (81)
T 1ghh_A 20 ALAGELSRRIQYAFPDNEGHVSVR 43 (81)
T ss_dssp HHHHHHHHHHHHHCSSSCCEEEEE
T ss_pred HHHHHHHHHHHhhCCCCCceEEEe
Confidence 577899999999999973 55553
No 15
>1sql_A Dihydroneopterin aldolase; tetrahydrofolate biosynthesis, aldolase classes, retroaldol reaction, purin binding, schiff base, lyase; HET: GUN; 2.20A {Arabidopsis thaliana} SCOP: d.96.1.3
Probab=40.61 E-value=50 Score=23.43 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEe
Q psy1891 134 GEIDRIEMKLRKKYPDIRHVDLE 156 (158)
Q Consensus 134 ~i~~~iE~~I~~~~p~~~~v~iE 156 (158)
..+++|-+.+.+.||.+..|.+.
T Consensus 94 ~lA~~Ia~~il~~fp~v~~v~V~ 116 (146)
T 1sql_A 94 TVAELIASKTLEKFHQINAVRVK 116 (146)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEEEE
Confidence 66888888899999998877664
No 16
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=40.26 E-value=31 Score=20.41 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=17.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH
Q psy1891 124 HSENIVDMVGGEIDRIEMKLRK 145 (158)
Q Consensus 124 ~~~~~~~~~h~i~~~iE~~I~~ 145 (158)
||+|.|....+.+|++|+.+..
T Consensus 9 fAERsV~KLek~ID~LEdeL~~ 30 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888899999988754
No 17
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=39.71 E-value=51 Score=22.74 Aligned_cols=33 Identities=24% Similarity=0.098 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEE
Q psy1891 47 DYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAE 83 (158)
Q Consensus 47 ~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~ 83 (158)
...+++.+.+.+.|+|..|+.+ .|++.+.+.++
T Consensus 80 ~~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~ 112 (152)
T 2cg4_A 80 KDYPSALAKLESLDEVTEAYYT----TGHYSIFIKVM 112 (152)
T ss_dssp GGHHHHHHHHHTCTTEEEEEEE----SSSCSEEEEEE
T ss_pred CCHHHHHHHHhCCcCeEEEEEE----ecccCEEEEEE
Confidence 3578899999999999999965 78875445444
No 18
>1z9w_A DHNA, dihydroneopterin aldolase; FOLB, structural genomics, TB ST genomics; 2.50A {Mycobacterium tuberculosis H37RV} SCOP: d.96.1.3
Probab=36.42 E-value=1e+02 Score=21.24 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEe
Q psy1891 134 GEIDRIEMKLRKKYPDIRHVDLE 156 (158)
Q Consensus 134 ~i~~~iE~~I~~~~p~~~~v~iE 156 (158)
..+++|-+.+.+ ||.+.++.+.
T Consensus 75 ~lA~~Ia~~il~-~~~v~~v~V~ 96 (133)
T 1z9w_A 75 TVGAEIADHVMD-DQRVHAVEVA 96 (133)
T ss_dssp HHHHHHHHHHHH-STTEEEEEEE
T ss_pred HHHHHHHHHHhc-CCCccEEEEE
Confidence 668888888888 9998877664
No 19
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=34.18 E-value=57 Score=23.57 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhCCCeeEEE
Q psy1891 135 EIDRIEMKLRKKYPDIRHVD 154 (158)
Q Consensus 135 i~~~iE~~I~~~~p~~~~v~ 154 (158)
.-..||.+|++++|++..|.
T Consensus 133 lk~~Ie~~l~e~vP~i~~V~ 152 (154)
T 2z51_A 133 VRVAVTQKLREKIPSIAAVQ 152 (154)
T ss_dssp HHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHHCCCccEEE
Confidence 34689999999999987663
No 20
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=31.95 E-value=44 Score=21.43 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=26.1
Q ss_pred ecCCcchHHHHHHHHHHHHH------------HHHHHHHHHhHHhhhCCCCChHHHHHHHHHHhcCCceee
Q psy1891 6 YTGSHIPDAVGSFLVGGILG------------CVAYFIVSSNIEALVGRSIPDDYLDKINAELESDVMIRA 64 (158)
Q Consensus 6 ~~G~~~~D~i~ai~Ia~~I~------------~~a~~l~~~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~ 64 (158)
++|..|.+-+.=++|+++++ --+++-||++.+..-++.-++...+++++.-...+....
T Consensus 2 Mf~ig~~ElliIlvVaLlvfGpkkLP~l~r~lGk~ir~fK~~~~~~~~e~~~~~~~~el~~~~~~~~~~~~ 72 (78)
T 2l16_A 2 FSNIGIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSATKSLVSGDEKEEKSAELTAVKQDKNAGLE 72 (78)
T ss_dssp CSSSCHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------------
T ss_pred CCCCCHHHHHHHHHHHhheeCccHhHHHHHHHHHHHHHHHHHHHHhHhhhhHHhhHHHHHHHHHHHHHHHH
Confidence 35667777777777777664 346777888887776554333344444444444444433
No 21
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=30.53 E-value=69 Score=21.87 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEE
Q psy1891 45 PDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAE 83 (158)
Q Consensus 45 ~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~ 83 (158)
++...+++.+.+.+.|+|..++.+ .|+..+.+.++
T Consensus 74 ~~~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~ 108 (144)
T 2cfx_A 74 KNADYERFKSYIQTLPNIEFCYRI----AGAACYMLKIN 108 (144)
T ss_dssp GGGCHHHHHHHHHTCTTEEEEEEE----ESSSSEEEEEE
T ss_pred CcccHHHHHHHHhcChhhheeeee----eCCCCEEEEEE
Confidence 455578899999999999999865 48765545554
No 22
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=27.08 E-value=1.3e+02 Score=19.27 Aligned_cols=39 Identities=13% Similarity=-0.012 Sum_probs=25.1
Q ss_pred HHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCCCc
Q psy1891 51 KINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGRE 90 (158)
Q Consensus 51 ~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l 90 (158)
.|.+++.++|+|...--+-...-+... .+.+.+...+..
T Consensus 18 eIE~vl~~~p~v~~~~vv~v~~~~~~~-~~~~~V~~~~~~ 56 (109)
T 3lax_A 18 QIETILLQFKELGSDYLITLETAESND-EMTVEVELSQLF 56 (109)
T ss_dssp HHHHHHHTCTTEEEEEEEEEEEETTEE-EEEEEEEECTTC
T ss_pred HHHHHHHhCCCcccceEEEEeccccce-eEEEEEEEeecc
Confidence 455778899999877666655555443 355566666554
No 23
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=27.03 E-value=1.6e+02 Score=20.47 Aligned_cols=33 Identities=9% Similarity=0.154 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEE
Q psy1891 46 DDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKA 82 (158)
Q Consensus 46 ~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l 82 (158)
++..+++.+.+.+.|+|..|+. .+|+..+.+.+
T Consensus 76 ~~~~~~~~~~l~~~peV~~~~~----vtG~~D~~l~v 108 (162)
T 3i4p_A 76 IEWLKRFSEVVSEFPEVVEFYR----MSGDVDYLLRV 108 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEE----CCSSCSEEEEE
T ss_pred hHHHHHHHHHHhcCCCEEEeee----cCCCCCEEEEE
Confidence 3567899999999999999996 36876444444
No 24
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=24.98 E-value=1.7e+02 Score=19.95 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=27.0
Q ss_pred CChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEE
Q psy1891 44 IPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAE 83 (158)
Q Consensus 44 ~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~ 83 (158)
++++..+++.+.+.+.|+|..++.+ .|+..+.+.++
T Consensus 75 ~~~~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~ 110 (151)
T 2cyy_A 75 VKAGKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIR 110 (151)
T ss_dssp ECTTCHHHHHHHHHTCTTEEEEEEC----SSSSSEEEEEE
T ss_pred ECcccHHHHHHHHhcCCCeeEeeEe----cCCCCEEEEEE
Confidence 3466778999999999999999863 58765444444
No 25
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=24.65 E-value=84 Score=19.83 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=36.8
Q ss_pred HhHHhhhCCCCChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEEEEeCCCcc
Q psy1891 34 SNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGREL 91 (158)
Q Consensus 34 ~s~~~Lld~~~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~v~vd~~l~ 91 (158)
++.-.|+.-..+++.++++.....=.+.|.+.--+| .-.++ ..++-+-++|+++
T Consensus 4 ~G~Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr--~d~~r--~YE~m~Il~P~l~ 57 (77)
T 3zzp_A 4 QGYTTWYQVEMPEDRVNDLARELRIRDNVRRVMVVA--STTPG--RYEVNIVLNPNLD 57 (77)
T ss_dssp CTTEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEE--CSSTT--EEEEEEEECTTCC
T ss_pred eEEEEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHh--ccCCC--ceEEEEEECCCCC
Confidence 344456666678999999999998888888765444 33444 2445556799984
No 26
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=24.14 E-value=67 Score=22.04 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhCCCe----eEEEE
Q psy1891 134 GEIDRIEMKLRKKYPDI----RHVDL 155 (158)
Q Consensus 134 ~i~~~iE~~I~~~~p~~----~~v~i 155 (158)
+.-+.+|.+|+++||+. .+|+|
T Consensus 30 eTyEWLqAal~RKyp~~~f~~~YIDI 55 (111)
T 1xg8_A 30 DIYDWLQPLLKRKYPNISFKYTYIDI 55 (111)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEEEET
T ss_pred hHHHHHHHHHhCcCCCCceEEEEEec
Confidence 56789999999999973 34665
No 27
>1ifk_A Inovirus; helical virus; 5.00A {Enterobacteria phage IF1} SCOP: h.1.4.1 PDB: 1nh4_A 2c0w_A 2c0x_A
Probab=23.61 E-value=1.1e+02 Score=18.05 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q psy1891 17 SFLVGGILGCVAYFIVSSNIE 37 (158)
Q Consensus 17 ai~Ia~~I~~~a~~l~~~s~~ 37 (158)
++++++.....|++||++-.+
T Consensus 28 ~vvv~vv~a~~gIKlFKKf~s 48 (51)
T 1ifk_A 28 ALVVLVVGATVGIKLFKKFVS 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhheeeehhhhhHHHhhhcc
Confidence 566777777889999988665
No 28
>3o1k_A Dihydroneopterin aldolase FOLB, putative; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Vibrio cholerae o1 biovar el tor}
Probab=22.90 E-value=1.4e+02 Score=20.49 Aligned_cols=22 Identities=0% Similarity=0.211 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEe
Q psy1891 134 GEIDRIEMKLRKKYPDIRHVDLE 156 (158)
Q Consensus 134 ~i~~~iE~~I~~~~p~~~~v~iE 156 (158)
..+++|-+.+.+.|| +..+.+.
T Consensus 89 ~lA~~Ia~~ll~~~~-v~~v~V~ 110 (132)
T 3o1k_A 89 RVAEEVAELIMTRFA-VPWLRIR 110 (132)
T ss_dssp HHHHHHHHHHHHHHC-CSEEEEE
T ss_pred HHHHHHHHHHHHhCC-ccEEEEE
Confidence 567788888888887 7776654
No 29
>1ifl_A Inovirus; helical virus; 5.00A {Enterobacteria phage ike} SCOP: h.1.4.1
Probab=22.30 E-value=1.2e+02 Score=18.02 Aligned_cols=21 Identities=0% Similarity=-0.034 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q psy1891 17 SFLVGGILGCVAYFIVSSNIE 37 (158)
Q Consensus 17 ai~Ia~~I~~~a~~l~~~s~~ 37 (158)
++++++.....|++||++-.+
T Consensus 30 ~vvv~vv~a~~gIklFKKf~s 50 (53)
T 1ifl_A 30 PVVTTVVVAGLVIRLFKKFSS 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhheeeechhhhhhhhhccc
Confidence 566777777889999988654
No 30
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=21.81 E-value=1.2e+02 Score=20.60 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEE
Q psy1891 46 DDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAE 83 (158)
Q Consensus 46 ~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~ 83 (158)
++..+++.+.+.+.|+|..++. ..|+..+.+.++
T Consensus 75 ~~~~~~~~~~l~~~p~V~~~~~----~tG~~d~~~~v~ 108 (150)
T 2pn6_A 75 KNYHVELGNKLAQIPGVWGVYF----VLGDNDFIVMAR 108 (150)
T ss_dssp TTHHHHHHHHHHTSTTEEEEEE----CSSSCSEEEEEE
T ss_pred hhHHHHHHHHHhcCchhhhhhh----hcCcCCEEEEEE
Confidence 6678899999999999999985 458765444443
No 31
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=21.08 E-value=64 Score=20.35 Aligned_cols=18 Identities=39% Similarity=0.473 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhCCCeeEE
Q psy1891 136 IDRIEMKLRKKYPDIRHV 153 (158)
Q Consensus 136 ~~~iE~~I~~~~p~~~~v 153 (158)
-..||+.|++.+|++..|
T Consensus 53 k~gIe~~L~~~vpei~~V 70 (74)
T 1th5_A 53 RIAVSKKLREKIPSIQIV 70 (74)
T ss_dssp HHHHHHHHHHHCTTCSEE
T ss_pred HHHHHHHHHHHCCCCcEE
Confidence 468999999999998655
No 32
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=21.03 E-value=2.3e+02 Score=20.04 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=26.8
Q ss_pred CChHHHHHHHHHHhcCCceeeeeeEEEEEecCceEEEEEE
Q psy1891 44 IPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAE 83 (158)
Q Consensus 44 ~~~~~~~~I~~~i~~~~gV~~vh~lrtr~~G~~~i~v~l~ 83 (158)
++++..+++.+.+.+.|+|..|+.+ .|+..+.+.++
T Consensus 95 ~~~~~~~~v~~~l~~~peV~~~~~v----tG~~d~l~~v~ 130 (171)
T 2e1c_A 95 VKAGKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIR 130 (171)
T ss_dssp ECTTCHHHHHHHHHTSTTEEEEEEC----SSSSSEEEEEE
T ss_pred ECcchHHHHHHHHhcCcCeEEEEEe----eCCCCEEEEEE
Confidence 3466678999999999999999863 58765444444
No 33
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=20.89 E-value=83 Score=19.51 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=27.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhHHhhhCC
Q psy1891 8 GSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGR 42 (158)
Q Consensus 8 G~~~~D~i~ai~Ia~~I~~~a~~l~~~s~~~Lld~ 42 (158)
||. --|+.|+++++|.++..+-+---|.+.|+|.
T Consensus 23 GWG-TtplMgv~m~Lf~vFl~iiLeIYNsSvlLdg 56 (65)
T 3arc_H 23 GWG-TTPLMAVFMGLFLVFLLIILEIYNSTLILDG 56 (65)
T ss_dssp TTT-THHHHHHHHHHHHHHHHHHHHHHTTSSCCTT
T ss_pred Ccc-ChhHHHHHHHHHHHHHHHHHHHhCcceeecC
Confidence 454 4589999999999998888888888888885
No 34
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=20.23 E-value=1.2e+02 Score=18.27 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=19.9
Q ss_pred CChHHHHHHHHHHhcCCceeeeeeE
Q psy1891 44 IPDDYLDKINAELESDVMIRAIYDV 68 (158)
Q Consensus 44 ~~~~~~~~I~~~i~~~~gV~~vh~l 68 (158)
.+++..+++.+.+.+.|+|.++..+
T Consensus 54 ~~~~~l~~l~~~L~~~~~V~~v~~~ 78 (88)
T 2ko1_A 54 KNTDKLTTLMDKLRKVQGVFTVERL 78 (88)
T ss_dssp SSHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCceEEEEe
Confidence 3567788999999999999887544
Done!