RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1891
(158 letters)
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 39.5 bits (93), Expect = 2e-04
Identities = 17/81 (20%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 6 YTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELESDVMIRAI 65
+ G H DA+ + +G + A + +++L+ R++PD+ +I + S +
Sbjct: 165 WYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGA 224
Query: 66 YDVKGIQMGNS-LIRYKAEVD 85
+D++ Q G + I+ E++
Sbjct: 225 HDLRTRQSGPTRFIQIHLEME 245
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.004
Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 34/162 (20%)
Query: 8 GSHIPDAVGSFL-VGGILGCVAYFIVSSNIEALVGR-------SIPDDYLDKINAELESD 59
+HIP + S + I V + + +LV + SIP YL+ + +LE++
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-LKVKLENE 442
Query: 60 VMIRAIYDVKGIQMGNSLI-RYKAEVDFDGRELTRSYLDK---QDLNTMLEEVQNMKTID 115
+ S++ Y FD +L YLD+ + L+ +++ + +
Sbjct: 443 Y-----------ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 116 EME------AFL---LKHSENIVDMVGGEIDRI-EMKLRKKY 147
FL ++H + G ++ + ++K K Y
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Score = 34.4 bits (78), Expect = 0.011
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 66 YDVKGIQMGNSLI------RYKAEVDF-DGRELTRSYLDKQDLNTMLEEVQNMKTIDEME 118
++ Q I + D D +++ +S L K++++ ++ + +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 119 AFLLKHSENIVDMVGGEIDRIEMKLRKKYP 148
LL E +V +E LR Y
Sbjct: 69 WTLLSKQEEMVQKF------VEEVLRINYK 92
Score = 32.1 bits (72), Expect = 0.073
Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 37/125 (29%)
Query: 46 DDY--------LDKINAELESDVMIRAIY-DVKGIQMGNSLIRYKAEVDFDGRELTRSYL 96
D Y L I E + R ++ D + + K D + S L
Sbjct: 470 DQYFYSHIGHHLKNIEHP-ERMTLFRMVFLDFR-------FLEQKIRHDSTAWNASGSIL 521
Query: 97 DK-QDLNTMLE-----EVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDI 150
+ Q L + + + ++ + FL K EN++ KY D+
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI--------------CSKYTDL 567
Query: 151 RHVDL 155
+ L
Sbjct: 568 LRIAL 572
Score = 29.4 bits (65), Expect = 0.57
Identities = 29/172 (16%), Positives = 52/172 (30%), Gaps = 53/172 (30%)
Query: 29 YFIVSSNIEALVGRSIPDDY-LDKINAELESDVMIRAIYDVKGIQMGNSLI-----RYKA 82
+ + N + S + I AEL ++ Y+ N L+ +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAEL-RRLLKSKPYE-------NCLLVLLNVQNAK 257
Query: 83 EVD-FDG--REL--TRSYLDKQDLNTM---------LEEVQNMKTIDEMEAFLLK----- 123
+ F+ + L TR KQ + + L+ T DE+++ LLK
Sbjct: 258 AWNAFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 124 ----------HSENIVDMVGGEI-------DRIEMKLRKKYPDIRHVDLEVL 158
+ + ++ I D + K I L VL
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.012
Identities = 38/170 (22%), Positives = 56/170 (32%), Gaps = 69/170 (40%)
Query: 1 MGLTLYTGS------------HIPDAVGSFLVGGILGCVAYFIVSSNIEALV-------G 41
MG+ LY S H D G F IL IV +N L G
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYG-F---SILD-----IVINNPVNLTIHFGGEKG 1681
Query: 42 RSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSLIRYKAEVDFDGRELTRSYL---DK 98
+ I ++Y S ++ I D G ++ + E + SY +K
Sbjct: 1682 KRIRENY---------SAMIFETIVD------GKLKTE---KIFKEINEHSTSYTFRSEK 1723
Query: 99 QDLN-TMLEEVQN----MKTIDEMEAF-LLKHSENIVD----MVG---GE 135
L+ T Q + + E AF LK S+ ++ G GE
Sbjct: 1724 GLLSAT-----QFTQPALTLM-EKAAFEDLK-SKGLIPADATFAGHSLGE 1766
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.00
Identities = 3/16 (18%), Positives = 8/16 (50%), Gaps = 2/16 (12%)
Query: 135 EIDRIEMKLRKKY-PD 149
+ +++ L+ Y D
Sbjct: 21 ALKKLQASLK-LYADD 35
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic
protein; HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 27.4 bits (60), Expect = 2.0
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 37 EALVGRSIPDDYLDKINAELESDVMI 62
E+ V R++ Y ++A E+D++I
Sbjct: 59 ESTVSRAMTRRYFADLDAHAETDIVI 84
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 27.6 bits (61), Expect = 2.0
Identities = 11/70 (15%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 88 GRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIV-DMVGGEIDRIEMKLRKK 146
+ L ++Y+ ++++ ++ + I + + HS + D EI ++ +
Sbjct: 236 DKTLEKAYVPEEEVLKLIADTPFPANI----SIAISHSIFVKGDQTNFEIGPAGVEASQL 291
Query: 147 YPDIRHVDLE 156
YPD+++ ++
Sbjct: 292 YPDVKYTTVD 301
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 2.3
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 17 SFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELESDVMIRAIYDVKGIQMGNS 76
SF G G + + + ++Y+ K++A +S + + G+ + N
Sbjct: 1444 SFGFGQKGGQAI-VVHPDYLYGAITEDRYNEYVAKVSAREKS--AYK--FFHNGM-IYNK 1497
Query: 77 LIRYKAEVDFDGRELTRSYLD 97
L K + YLD
Sbjct: 1498 LFVSKEHAPYTDELEEDVYLD 1518
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane
channel protein, transport PROT; HET: BOG; 2.10A
{Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A*
1ldi_A*
Length = 281
Score = 27.2 bits (61), Expect = 2.6
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 19 LVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAELES 58
+VG I+G AY L+GR +P D E +
Sbjct: 241 IVGAIVGAFAY-------RKLIGRHLPCDICVVEEKETTT 273
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor,
pyrolloquinoline quinone (PQQ), quinoprotein, sugar
binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Length = 353
Score = 27.3 bits (61), Expect = 2.6
Identities = 4/21 (19%), Positives = 6/21 (28%)
Query: 2 GLTLYTGSHIPDAVGSFLVGG 22
G+ Y P +G
Sbjct: 275 GMAFYNSDKFPQWQQKLFIGA 295
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase,
aldose sugar dehydrogenase, BET propeller fold,
oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum}
PDB: 3a9h_A*
Length = 354
Score = 26.9 bits (60), Expect = 2.8
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 2 GLTLYTGSHIPDAVGSFLVGG 22
G + G P G L+
Sbjct: 263 GASFVHGDMFPGLRGWLLIAC 283
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A,
confirmed by transcript...; lipid transport; HET: CSX;
1.80A {Caenorhabditis elegans}
Length = 140
Score = 26.2 bits (57), Expect = 4.0
Identities = 7/55 (12%), Positives = 19/55 (34%)
Query: 97 DKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIR 151
+K L+ + ++ EM + K + + ++ + +L P
Sbjct: 31 EKPVLHEVFQKHSCFSQCGEMIDEVSKKHPELGKRLATVLEGNKKRLDGLSPAAV 85
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase,
serine/threonine kinase, cyclin clathrine, membrane
trafficking, structural genomics; 2.10A {Homo sapiens}
Length = 337
Score = 26.3 bits (58), Expect = 4.6
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 8/51 (15%)
Query: 97 DKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKY 147
+++ +++EV MK L NIV E +
Sbjct: 65 EEEKNRAIIQEVCFMKK--------LSGHPNIVQFCSAASIGKEESDTGQA 107
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione
reductase type II family, thiazole synthase,
mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces
cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 26.3 bits (57), Expect = 5.1
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 37 EALVGRSIPDDYLDKINAELESDVMI 62
E+ V R++ Y ++ SDV+I
Sbjct: 45 ESTVSRAMTSRYFKDLDKFAVSDVII 70
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 25.7 bits (56), Expect = 8.9
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 88 GRELTRSYLDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIV-DMVGGEIDRIEMKLRKK 146
+ L + Y+ QD +++ K+ +E + D+ EI ++ K
Sbjct: 241 EQNLDKIYISSQDFLADMKD----KSYEEKIVRCHLYQIFFRGDLYNFEIGPNAIEATKL 296
Query: 147 YPDIRHVDLE 156
YP++++V ++
Sbjct: 297 YPEVKYVTMD 306
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 25.4 bits (55), Expect = 9.7
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 37 EALVGRSIPDDYLDKINAELESDVMI 62
E++V R + Y+ + E+DV++
Sbjct: 19 ESIVSREMTRRYMTDMITYAETDVVV 44
>2ife_A Protein (translation initiation factor IF3); gene regulation; NMR
{Escherichia coli} SCOP: d.68.1.1
Length = 100
Score = 24.4 bits (54), Expect = 9.9
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 81 KAEVDFDGRELTRSYLDKQDLNTMLEEVQNMKTIDEM 117
K + F GRE+ + + LN + +++Q + ++
Sbjct: 45 KITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVESF 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.390
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,565,791
Number of extensions: 156515
Number of successful extensions: 396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 42
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)