RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1891
         (158 letters)



>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
           {Escherichia coli [TaxId: 562]}
          Length = 204

 Score = 32.4 bits (73), Expect = 0.013
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 1   MGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGR 42
                + G H  DA+ +  +G  +   A  +    +++L+ R
Sbjct: 163 ALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDR 204


>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId:
           562]}
          Length = 174

 Score = 27.0 bits (60), Expect = 0.77
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)

Query: 17  SFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKIN 53
           S L G  LG + Y +    + A+ G  I +  ++K N
Sbjct: 139 SILTGSALGIIGYGL----LMAVTGALIDESLVEKAN 171


>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP)
          {Escherichia coli [TaxId: 562]}
          Length = 82

 Score = 24.7 bits (54), Expect = 2.4
 Identities = 7/35 (20%), Positives = 17/35 (48%)

Query: 43 SIPDDYLDKINAELESDVMIRAIYDVKGIQMGNSL 77
          ++PD+   +I   + S   +   +D++  Q G + 
Sbjct: 1  ALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTR 35


>d1yrxa1 d.58.10.2 (A:17-130) Sensor of blue light AppA {Rhodobacter
           sphaeroides [TaxId: 1063]}
          Length = 114

 Score = 24.5 bits (53), Expect = 5.0
 Identities = 12/63 (19%), Positives = 23/63 (36%)

Query: 96  LDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIRHVDL 155
           L  +DL  ++E  Q      ++   L          + G    +   +     D RH ++
Sbjct: 13  LTLRDLLDIVETSQAHNARAQLTGALFYSQGVFFQWLEGRPAAVAEVMTHIQRDRRHSNV 72

Query: 156 EVL 158
           E+L
Sbjct: 73  EIL 75


>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI,
           PsaL {Synechococcus elongatus [TaxId: 32046]}
          Length = 151

 Score = 24.3 bits (53), Expect = 6.2
 Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 1/20 (5%)

Query: 16  GSFLVGGILGCV-AYFIVSS 34
             F VG +     A+F++ +
Sbjct: 119 AGFFVGAMGSAFVAFFLLEN 138


>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 311

 Score = 24.5 bits (52), Expect = 8.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 37 EALVGRSIPDDYLDKINAELESDVMI 62
          E+ V R++   Y   ++    SDV+I
Sbjct: 30 ESTVSRAMTSRYFKDLDKFAVSDVII 55


>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
          Length = 197

 Score = 24.0 bits (52), Expect = 8.2
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 14  AVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLDKINAEL 56
            +G++ +   +  +A  I    + A+VG  I D + D +N E+
Sbjct: 153 TLGAYALSLGVPAIAVGIAGILLAAVVGALIDDKFADALNNEI 195


>d2byca1 d.58.10.2 (A:1-136) Blue light receptor BlrB {Rhodobacter
           sphaeroides [TaxId: 1063]}
          Length = 136

 Score = 23.8 bits (51), Expect = 8.7
 Identities = 9/63 (14%), Positives = 20/63 (31%)

Query: 96  LDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIRHVDL 155
               D+  ++   +       +   LL +  + V  + G     +   R    D RH ++
Sbjct: 17  DPVADIVQIMRASRVRNLRLGITGILLYNGVHFVQTIEGPRSACDELFRLISADPRHQEI 76

Query: 156 EVL 158
              
Sbjct: 77  LAF 79


>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
           factor DnaA {Aquifex aeolicus [TaxId: 63363]}
          Length = 213

 Score = 24.0 bits (51), Expect = 9.0
 Identities = 8/28 (28%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 115 DEMEAFLLKHSENIVDMVGGEIDRIEMK 142
            E+  +LL++++N+ ++ G  I  I++K
Sbjct: 187 KEVIDYLLENTKNVREIEGK-IKLIKLK 213


>d1x0pa1 d.58.10.2 (A:102-243) Hypothetical protein Tll0078
           {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 142

 Score = 23.8 bits (51), Expect = 9.5
 Identities = 10/63 (15%), Positives = 24/63 (38%)

Query: 96  LDKQDLNTMLEEVQNMKTIDEMEAFLLKHSENIVDMVGGEIDRIEMKLRKKYPDIRHVDL 155
           L   DL  ++ + +     D +   L   +   +  + G+  ++     +   D RH   
Sbjct: 15  LSYPDLRDIMAKSEVNNLRDGITGMLCYGNGMFLQTLEGDRQKVSETYARILKDPRHHSA 74

Query: 156 EVL 158
           E++
Sbjct: 75  EIV 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.140    0.390 

Gapped
Lambda     K      H
   0.267   0.0502    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 606,627
Number of extensions: 27825
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 21
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)