BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1892
(64 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49415|SDC_DROME Syndecan OS=Drosophila melanogaster GN=Sdc PE=2 SV=2
Length = 399
Score = 108 bits (269), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/62 (83%), Positives = 56/62 (90%), Gaps = 1/62 (1%)
Query: 4 PLATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNS-NREF 62
P + VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYAL+EPKRSPA+NSY KN+ NREF
Sbjct: 338 PGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDEPKRSPANNSYAKNANNREF 397
Query: 63 YA 64
YA
Sbjct: 398 YA 399
>sp|P50605|SDC_CAEEL Probable syndecan OS=Caenorhabditis elegans GN=sdn-1 PE=2 SV=1
Length = 288
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 44/57 (77%), Gaps = 2/57 (3%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPK--RSPASNSYMKNSNREFYA 64
+ GG +V ++ AIL+V+F+V+R+RKKDEGSYAL+EPK R AS Y K S +EFYA
Sbjct: 232 IAGGVLVAVITAILLVLFVVFRIRKKDEGSYALDEPKQARPYASYGYTKASTKEFYA 288
>sp|P26260|SDC1_RAT Syndecan-1 OS=Rattus norvegicus GN=Sdc1 PE=2 SV=2
Length = 313
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
VI G +VGL+ A+ +V F++YRM+KKDEGSY+LEEPK++ EFYA
Sbjct: 259 VIAGGLVGLIFAVCLVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 313
>sp|Q6GR51|SDC2B_XENLA Syndecan-2-B OS=Xenopus laevis GN=sdc2-b PE=2 SV=1
Length = 190
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
VI G +G L A+ +++ +VYRMRKKDEGSY L E R P+S Y K +EFYA
Sbjct: 138 VIAGGGIGFLFAVFLILLLVYRMRKKDEGSYDLGE--RKPSSAVYQKAPTKEFYA 190
>sp|P49414|SDC2A_XENLA Syndecan-2-A OS=Xenopus laevis GN=sdc2-a PE=2 SV=2
Length = 191
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
VI G +G L A+ +++ +VYRMRKKDEGSY L E R P+S Y K +EFYA
Sbjct: 139 VIAGGGIGFLFAVFLILLLVYRMRKKDEGSYDLGE--RKPSSAVYQKAPTKEFYA 191
>sp|P18828|SDC1_MOUSE Syndecan-1 OS=Mus musculus GN=Sdc1 PE=1 SV=1
Length = 311
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
VI G +VGL+ A+ +V F++YRM+KKDEGSY+LEEPK++ EFYA
Sbjct: 257 VIAGGLVGLIFAVCLVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 311
>sp|P18827|SDC1_HUMAN Syndecan-1 OS=Homo sapiens GN=SDC1 PE=1 SV=3
Length = 310
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
VI G +VGL+ A+ +V F++YRM+KKDEGSY+LEEPK++ EFYA
Sbjct: 256 VIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 310
>sp|P47951|SDC1_CRIGR Syndecan-1 OS=Cricetulus griseus GN=SDC1 PE=2 SV=1
Length = 309
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
VI G +VGL+ A+ +V F++YRM+KKDEGSY+LEEPK++ EFYA
Sbjct: 255 VIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 309
>sp|P34740|SDC1_MESAU Syndecan-1 OS=Mesocricetus auratus GN=SDC1 PE=2 SV=1
Length = 309
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
VI G +VGL+ A+ +V F++YRM+KKDEGSY+LEEPK++ EFYA
Sbjct: 255 VIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 309
>sp|Q08DZ5|SDC1_BOVIN Syndecan-1 OS=Bos taurus GN=SDC1 PE=2 SV=1
Length = 311
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
VI G +VGL+ A+ +V F++YRM+KKDEGSY+LEEPK++ EFYA
Sbjct: 257 VIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 311
>sp|P26261|SDC3_CHICK Syndecan-3 OS=Gallus gallus GN=SDC3 PE=2 SV=2
Length = 405
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/56 (57%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
VI G VVG L A +VM ++YRM+KKDEGSY LEEPK+ A+ +Y K + EFYA
Sbjct: 352 VIVGGVVGALFAAFLVMLLIYRMKKKDEGSYTLEEPKQ--ANVTYQKPDKQEEFYA 405
>sp|P43407|SDC2_MOUSE Syndecan-2 OS=Mus musculus GN=Sdc2 PE=1 SV=1
Length = 202
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+S +Y K +EFYA
Sbjct: 150 VIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSSAAYQKAPTKEFYA 202
>sp|Q58DD4|SDC2_BOVIN Syndecan-2 OS=Bos taurus GN=SDC2 PE=2 SV=1
Length = 202
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+S +Y K +EFYA
Sbjct: 150 VIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSSAAYQKAPTKEFYA 202
>sp|P34741|SDC2_HUMAN Syndecan-2 OS=Homo sapiens GN=SDC2 PE=1 SV=2
Length = 201
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+S +Y K +EFYA
Sbjct: 149 VIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSSAAYQKAPTKEFYA 201
>sp|P49416|SDC4_CHICK Syndecan-4 OS=Gallus gallus GN=SDC4 PE=1 SV=1
Length = 197
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ +I G VGLL A+ +++ +VYRM+KKDEGSY L + P Y K EFYA
Sbjct: 147 TALIAGGAVGLLFAVFLILLLVYRMKKKDEGSYDL---GKKPI---YKKAPTNEFYA 197
>sp|P34900|SDC2_RAT Syndecan-2 OS=Rattus norvegicus GN=Sdc2 PE=2 SV=2
Length = 201
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+S +Y K +EFYA
Sbjct: 147 AAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSSAAYQKAPTKEFYA 201
>sp|O35988|SDC4_MOUSE Syndecan-4 OS=Mus musculus GN=Sdc4 PE=1 SV=1
Length = 198
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ +I G VVG+L A+ +++ +VYRM+KKDEGSY L + P Y K EFYA
Sbjct: 148 AALIVGGVVGILFAVFLILLLVYRMKKKDEGSYDL---GKKPI---YKKAPTNEFYA 198
>sp|P34901|SDC4_RAT Syndecan-4 OS=Rattus norvegicus GN=Sdc4 PE=1 SV=1
Length = 202
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ +I G VVG+L A+ +++ +VYRM+KKDEGSY L + P Y K EFYA
Sbjct: 152 AALIVGGVVGILFAVFLILLLVYRMKKKDEGSYDL---GKKPI---YKKAPTNEFYA 202
>sp|P33671|SDC3_RAT Syndecan-3 OS=Rattus norvegicus GN=Sdc3 PE=2 SV=3
Length = 442
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 21 AILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
A +V ++YRM+KKDEGSY LEEPK+ AS +Y K + EFYA
Sbjct: 400 AAFLVTLLIYRMKKKDEGSYTLEEPKQ--ASVTYQKPDKQEEFYA 442
>sp|Q64519|SDC3_MOUSE Syndecan-3 OS=Mus musculus GN=Sdc3 PE=2 SV=2
Length = 442
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 21 AILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
A +V ++YRM+KKDEGSY LEEPK+ AS +Y K + EFYA
Sbjct: 400 AAFLVTLLIYRMKKKDEGSYTLEEPKQ--ASVTYQKPDKQEEFYA 442
>sp|O75056|SDC3_HUMAN Syndecan-3 OS=Homo sapiens GN=SDC3 PE=1 SV=2
Length = 442
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 21 AILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
A +V ++YRM+KKDEGSY LEEPK+ AS +Y K + EFYA
Sbjct: 400 AAFLVTLLIYRMKKKDEGSYTLEEPKQ--ASVTYQKPDKQEEFYA 442
>sp|Q5RAT9|SDC4_PONAB Syndecan-4 OS=Pongo abelii GN=SDC4 PE=2 SV=1
Length = 198
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ +I G +VG+L A+ +++ ++YRM+KKDEGSY L + P Y K EFYA
Sbjct: 148 AALIVGGIVGILFAVFLILLLMYRMKKKDEGSYDL---GKKPI---YKKAPTNEFYA 198
>sp|P31431|SDC4_HUMAN Syndecan-4 OS=Homo sapiens GN=SDC4 PE=1 SV=2
Length = 198
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ +I G +VG+L A+ +++ ++YRM+KKDEGSY L + P Y K EFYA
Sbjct: 148 AALIVGGIVGILFAVFLILLLMYRMKKKDEGSYDL---GKKPI---YKKAPTNEFYA 198
>sp|A1XQX2|NR1BA_DANRE Neurexin-1b OS=Danio rerio GN=nrxn1b PE=2 SV=1
Length = 1470
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 6 ATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSN 59
T+ ++ G V G IL++++ +Y+ R +DEGSY ++E S +Y+ NSN
Sbjct: 1395 GTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDE------SRNYICNSN 1442
>sp|A1XQX3|NR1BB_DANRE Neurexin-1b-beta OS=Danio rerio GN=nrxn1b PE=2 SV=1
Length = 448
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 6 ATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSN 59
T+ ++ G V G IL++++ +Y+ R +DEGSY ++E S +Y+ NSN
Sbjct: 373 GTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDE------SRNYICNSN 420
>sp|A1XQY1|NR3BA_DANRE Neurexin-3b OS=Danio rerio GN=nrxn3b PE=2 SV=1
Length = 1686
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 24/80 (30%)
Query: 8 STVIGGAVVGLLCA----ILVVMFIVYRMRKKDEGSYALEE------------------- 44
S+ G VVG++ A IL++++ +Y+ R +DEGSY ++E
Sbjct: 1606 SSSTTGMVVGIVSAAALCILILLYAMYKYRNRDEGSYQVDETRNYISNSAQNNGTVVKDK 1665
Query: 45 -PKRSPASNSYMKNSNREFY 63
P ASN K+ ++E+Y
Sbjct: 1666 QPSTKGASNKRPKDKDKEYY 1685
>sp|Q6P9K9|NRX3A_MOUSE Neurexin-3 OS=Mus musculus GN=Nrxn3 PE=1 SV=2
Length = 1571
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 1496 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYQVDE-TRNYISNSAQSN 1544
>sp|Q9Y4C0|NRX3A_HUMAN Neurexin-3 OS=Homo sapiens GN=NRXN3 PE=1 SV=4
Length = 1643
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 1568 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYQVDE-TRNYISNSAQSN 1616
>sp|D0PRN3|NRX3A_CHICK Neurexin-3 OS=Gallus gallus PE=1 SV=1
Length = 1693
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 1618 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYQVDE-TRNYISNSAQSN 1666
>sp|Q63372|NRX1A_RAT Neurexin-1 OS=Rattus norvegicus GN=Nrxn1 PE=1 SV=3
Length = 1530
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 1454 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYHVDE-SRNYISNSAQSN 1502
>sp|Q9CS84|NRX1A_MOUSE Neurexin-1 OS=Mus musculus GN=Nrxn1 PE=1 SV=3
Length = 1514
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 1438 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYHVDE-SRNYISNSAQSN 1486
>sp|Q9ULB1|NRX1A_HUMAN Neurexin-1 OS=Homo sapiens GN=NRXN1 PE=2 SV=1
Length = 1477
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 1401 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYHVDE-SRNYISNSAQSN 1449
>sp|Q9DDD0|NRX1A_CHICK Neurexin-1 (Fragment) OS=Gallus gallus GN=NRXN1 PE=2 SV=1
Length = 1363
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 1287 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYHVDE-SRNYISNSAQSN 1335
>sp|Q28146|NRX1A_BOVIN Neurexin-1 OS=Bos taurus GN=NRXN1 PE=1 SV=1
Length = 1530
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 1454 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYHVDE-SRNYISNSAQSN 1502
>sp|Q07310|NRX3A_RAT Neurexin-3 OS=Rattus norvegicus GN=Nrxn3 PE=1 SV=1
Length = 1578
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 1503 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYQVDE-TRNYISNSAQSN 1551
>sp|Q28143|NRX3B_BOVIN Neurexin-3-beta OS=Bos taurus GN=NRXN3 PE=1 SV=2
Length = 456
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 381 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYQVDE-TRNYISNSAQSN 429
>sp|Q8C985|NRX3B_MOUSE Neurexin-3-beta OS=Mus musculus GN=Nrxn3 PE=2 SV=2
Length = 567
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 492 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYQVDE-TRNYISNSAQSN 540
>sp|D0PRN4|NRX3B_CHICK Neurexin-3-beta OS=Gallus gallus GN=NRXN3 PE=1 SV=2
Length = 668
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 593 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYQVDE-TRNYISNSAQSN 641
>sp|Q9HDB5|NRX3B_HUMAN Neurexin-3-beta OS=Homo sapiens GN=NRXN3 PE=1 SV=4
Length = 637
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 562 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYQVDE-TRNYISNSAQSN 610
>sp|A1XQX0|NR1AA_DANRE Neurexin-1a OS=Danio rerio GN=nrxn1a PE=2 SV=1
Length = 1491
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNS 58
T V+G LC IL++++ +Y+ R +DEGSY ++E S +Y+ NS
Sbjct: 1415 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYHVDE------SRNYISNS 1459
>sp|D0PRN2|NRX1B_CHICK Neurexin-1-beta OS=Gallus gallus GN=NRXN1 PE=1 SV=1
Length = 466
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 390 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYHVDE-SRNYISNSAQSN 438
>sp|A1XQX8|NR3AA_DANRE Neurexin-3a OS=Danio rerio GN=nrxn3a PE=2 SV=1
Length = 1697
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 20/76 (26%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKR------------------- 47
T V+G LC IL++++ +Y+ R +DEGSY ++E +
Sbjct: 1622 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYQVDETRNYITNSAQSNGAVMKDKQQS 1680
Query: 48 SPASNSYMKNSNREFY 63
+ + N KN ++E+Y
Sbjct: 1681 TKSGNKKQKNKDKEYY 1696
>sp|P0DI97|NRX1B_MOUSE Neurexin-1-beta OS=Mus musculus GN=Nrxn1 PE=1 SV=1
Length = 468
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 392 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYHVDE-SRNYISNSAQSN 440
>sp|Q63373|NRX1B_RAT Neurexin-1-beta OS=Rattus norvegicus GN=Nrxn1 PE=1 SV=1
Length = 468
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 392 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYHVDE-SRNYISNSAQSN 440
>sp|Q28142|NRX1B_BOVIN Neurexin-1-beta OS=Bos taurus GN=NRXN1 PE=1 SV=2
Length = 467
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 391 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYHVDE-SRNYISNSAQSN 439
>sp|Q9P2S2|NRX2A_HUMAN Neurexin-2 OS=Homo sapiens GN=NRXN2 PE=2 SV=1
Length = 1712
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY +++ R+ SNS N
Sbjct: 1636 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYQVDQ-SRNYISNSAQSN 1684
>sp|A1XQY3|NR3BB_DANRE Neurexin-3b-beta OS=Danio rerio GN=nrxn3b PE=2 SV=1
Length = 675
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 24/80 (30%)
Query: 8 STVIGGAVVGLLCA----ILVVMFIVYRMRKKDEGSYALEE------------------- 44
S+ G VVG++ A IL++++ +Y+ R +DEGSY ++E
Sbjct: 595 SSSTTGMVVGIVSAAALCILILLYAMYKYRNRDEGSYQVDETRNYISNSAQNNGTVVKDK 654
Query: 45 -PKRSPASNSYMKNSNREFY 63
P ASN K+ ++E+Y
Sbjct: 655 QPSTKGASNKRPKDKDKEYY 674
>sp|Q63374|NRX2A_RAT Neurexin-2 OS=Rattus norvegicus GN=Nrxn2 PE=1 SV=3
Length = 1715
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY +++ R+ SNS N
Sbjct: 1639 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYQVDQ-SRNYISNSAQSN 1687
>sp|P58400|NRX1B_HUMAN Neurexin-1-beta OS=Homo sapiens GN=NRXN1 PE=1 SV=2
Length = 442
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 366 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYHVDE-SRNYISNSAQSN 414
>sp|A1XQX1|NR1AB_DANRE Neurexin-1a-beta OS=Danio rerio GN=nrxn1a PE=2 SV=1
Length = 449
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNS 58
T V+G LC IL++++ +Y+ R +DEGSY ++E S +Y+ NS
Sbjct: 373 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYHVDE------SRNYISNS 417
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,341,794
Number of Sequences: 539616
Number of extensions: 676664
Number of successful extensions: 2699
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2614
Number of HSP's gapped (non-prelim): 81
length of query: 64
length of database: 191,569,459
effective HSP length: 36
effective length of query: 28
effective length of database: 172,143,283
effective search space: 4820011924
effective search space used: 4820011924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)