Query psy1892
Match_columns 64
No_of_seqs 74 out of 76
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 18:55:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01034 Syndecan: Syndecan do 100.0 4.6E-32 1E-36 165.9 0.4 60 1-62 5-64 (64)
2 PF01102 Glycophorin_A: Glycop 98.5 2.1E-07 4.5E-12 62.2 4.0 32 5-36 64-95 (122)
3 PF01102 Glycophorin_A: Glycop 97.9 8.2E-06 1.8E-10 54.6 2.8 36 4-39 59-95 (122)
4 smart00294 4.1m putative band 97.9 1.5E-06 3.2E-11 45.7 -0.9 20 29-48 1-20 (26)
5 KOG3514|consensus 97.7 2.3E-05 5E-10 68.2 2.4 43 4-46 1511-1553(1591)
6 PTZ00382 Variant-specific surf 96.8 6.7E-05 1.5E-09 47.8 -3.2 28 4-31 61-89 (96)
7 PF02439 Adeno_E3_CR2: Adenovi 96.7 0.0043 9.3E-08 34.9 4.0 31 4-34 2-32 (38)
8 PF03302 VSP: Giardia variant- 96.1 0.0012 2.6E-08 50.1 -0.4 29 3-31 361-390 (397)
9 PF02009 Rifin_STEVOR: Rifin/s 96.0 0.011 2.5E-07 44.3 4.2 27 10-36 258-285 (299)
10 PF02480 Herpes_gE: Alphaherpe 95.9 0.0022 4.8E-08 49.8 0.0 53 6-63 353-405 (439)
11 PF01299 Lamp: Lysosome-associ 95.6 0.0077 1.7E-07 43.7 1.9 32 5-36 270-301 (306)
12 PF08693 SKG6: Transmembrane a 95.3 0.0058 1.3E-07 34.6 0.3 20 16-35 21-40 (40)
13 PF08374 Protocadherin: Protoc 95.2 0.0086 1.9E-07 44.1 1.1 12 5-16 38-49 (221)
14 PF05808 Podoplanin: Podoplani 94.8 0.0077 1.7E-07 42.5 0.0 29 4-32 124-156 (162)
15 PF05808 Podoplanin: Podoplani 94.3 0.013 2.7E-07 41.4 0.0 16 9-24 125-140 (162)
16 PF14575 EphA2_TM: Ephrin type 94.2 0.021 4.5E-07 34.9 0.9 6 26-31 20-25 (75)
17 PTZ00046 rifin; Provisional 93.8 0.12 2.5E-06 40.2 4.5 30 7-36 314-344 (358)
18 TIGR01477 RIFIN variant surfac 93.7 0.13 2.7E-06 40.0 4.4 29 8-36 310-339 (353)
19 PF10873 DUF2668: Protein of u 93.6 0.039 8.6E-07 38.9 1.4 18 4-21 56-73 (155)
20 PF04478 Mid2: Mid2 like cell 93.5 0.0026 5.7E-08 44.5 -4.5 24 6-29 50-73 (154)
21 PF15179 Myc_target_1: Myc tar 93.0 0.49 1.1E-05 34.5 6.3 33 4-36 19-51 (197)
22 PF12732 YtxH: YtxH-like prote 92.9 0.085 1.8E-06 31.3 2.0 15 8-22 3-17 (74)
23 PF09472 MtrF: Tetrahydrometha 92.3 0.3 6.5E-06 29.9 3.8 26 5-30 36-61 (64)
24 TIGR01478 STEVOR variant surfa 92.2 0.22 4.9E-06 38.0 3.9 21 15-35 266-286 (295)
25 PF12732 YtxH: YtxH-like prote 92.0 0.2 4.3E-06 29.7 2.8 17 5-21 4-20 (74)
26 PTZ00370 STEVOR; Provisional 91.9 0.25 5.4E-06 37.8 3.9 28 15-43 262-289 (296)
27 PF06295 DUF1043: Protein of u 91.8 0.034 7.3E-07 36.6 -0.8 18 10-27 2-19 (128)
28 PF10031 DUF2273: Small integr 90.9 0.49 1.1E-05 27.4 3.6 23 9-31 9-31 (51)
29 PF07213 DAP10: DAP10 membrane 90.7 0.52 1.1E-05 30.0 3.9 26 6-31 31-56 (79)
30 KOG3817|consensus 90.5 0.2 4.4E-06 40.1 2.3 25 12-36 166-191 (452)
31 PRK14748 kdpF potassium-transp 90.4 0.51 1.1E-05 25.3 3.1 20 12-31 3-22 (29)
32 PF04478 Mid2: Mid2 like cell 90.0 0.012 2.7E-07 41.2 -4.3 30 9-38 49-79 (154)
33 PF13908 Shisa: Wnt and FGF in 89.6 0.11 2.4E-06 34.9 0.1 21 6-26 76-96 (179)
34 PRK09459 pspG phage shock prot 89.4 1.8 3.9E-05 27.5 5.5 32 5-36 23-65 (76)
35 PF05283 MGC-24: Multi-glycosy 89.0 0.49 1.1E-05 33.7 3.1 24 9-34 162-185 (186)
36 PF15069 FAM163: FAM163 family 88.4 0.47 1E-05 33.0 2.6 22 10-31 7-28 (143)
37 PF05356 Phage_Coat_B: Phage C 88.2 1.1 2.4E-05 28.9 4.0 25 10-34 58-82 (83)
38 PRK06287 cobalt transport prot 88.2 1.4 2.9E-05 28.6 4.5 29 7-36 77-105 (107)
39 PF12191 stn_TNFRSF12A: Tumour 88.1 0.11 2.5E-06 35.6 -0.5 38 9-46 79-118 (129)
40 PF06295 DUF1043: Protein of u 88.1 0.51 1.1E-05 31.0 2.5 10 15-24 3-12 (128)
41 PF05545 FixQ: Cbb3-type cytoc 87.9 0.88 1.9E-05 25.2 3.1 29 13-41 11-39 (49)
42 COG4218 MtrF Tetrahydromethano 87.8 0.88 1.9E-05 28.8 3.3 22 5-26 45-66 (73)
43 PF12669 P12: Virus attachment 87.7 0.63 1.4E-05 27.3 2.5 6 33-38 22-27 (58)
44 PF12877 DUF3827: Domain of un 87.5 0.47 1E-05 39.8 2.5 35 10-44 271-305 (684)
45 PF01034 Syndecan: Syndecan do 87.3 0.18 3.9E-06 31.0 0.0 27 8-34 8-35 (64)
46 PF06305 DUF1049: Protein of u 87.3 1.5 3.3E-05 24.8 3.9 22 10-31 24-45 (68)
47 TIGR02205 septum_zipA cell div 86.9 0.36 7.8E-06 36.1 1.4 21 14-34 7-27 (284)
48 KOG0196|consensus 86.5 0.83 1.8E-05 39.7 3.5 56 6-61 549-613 (996)
49 PTZ00382 Variant-specific surf 86.3 0.037 8E-07 35.2 -3.5 29 3-31 64-93 (96)
50 PF12768 Rax2: Cortical protei 86.0 1.1 2.3E-05 33.1 3.5 27 12-38 234-260 (281)
51 PF05393 Hum_adeno_E3A: Human 85.8 1.2 2.6E-05 29.3 3.3 34 2-35 27-60 (94)
52 PRK11677 hypothetical protein; 85.6 0.17 3.7E-06 34.3 -0.8 18 10-27 6-23 (134)
53 PF07213 DAP10: DAP10 membrane 85.6 1.1 2.5E-05 28.5 3.0 33 3-36 32-64 (79)
54 PF01299 Lamp: Lysosome-associ 85.6 0.62 1.3E-05 33.8 2.0 31 9-39 270-301 (306)
55 PF13908 Shisa: Wnt and FGF in 85.4 0.21 4.5E-06 33.6 -0.5 23 8-30 74-96 (179)
56 COG5547 Small integral membran 85.4 1.7 3.6E-05 26.8 3.6 20 11-30 11-30 (62)
57 PF15102 TMEM154: TMEM154 prot 85.2 0.28 6.1E-06 34.1 0.1 27 12-38 63-89 (146)
58 PF15330 SIT: SHP2-interacting 84.8 3.9 8.4E-05 26.7 5.3 12 26-37 18-29 (107)
59 COG4980 GvpP Gas vesicle prote 84.7 0.77 1.7E-05 30.8 2.0 19 5-23 6-24 (115)
60 PRK12659 putative monovalent c 84.2 2.4 5.2E-05 27.8 4.1 37 9-47 76-112 (117)
61 PF05454 DAG1: Dystroglycan (D 84.1 0.32 6.9E-06 36.6 0.0 34 9-44 148-182 (290)
62 PRK13275 mtrF tetrahydromethan 84.0 2.6 5.7E-05 26.0 4.0 21 5-25 36-56 (67)
63 PF04971 Lysis_S: Lysis protei 83.7 2 4.4E-05 26.7 3.5 18 13-30 37-54 (68)
64 PRK11677 hypothetical protein; 83.7 1.1 2.5E-05 30.3 2.6 16 14-29 6-21 (134)
65 PF12301 CD99L2: CD99 antigen 83.4 1.4 3E-05 30.9 3.0 29 6-34 112-142 (169)
66 PF13937 DUF4212: Domain of un 82.9 1.1 2.3E-05 28.2 2.0 22 22-44 60-81 (81)
67 COG4980 GvpP Gas vesicle prote 82.9 1.9 4.1E-05 28.9 3.3 17 5-21 10-26 (115)
68 PF10225 DUF2215: Uncharacteri 82.6 1.4 3.1E-05 31.9 2.9 24 12-35 40-64 (249)
69 TIGR01167 LPXTG_anchor LPXTG-m 82.5 1.8 4E-05 21.7 2.5 6 13-18 13-18 (34)
70 PF11021 DUF2613: Protein of u 82.3 2.1 4.5E-05 25.6 3.0 27 4-30 2-28 (56)
71 PRK12660 putative monovalent c 81.7 4.1 8.8E-05 26.5 4.5 38 8-47 72-109 (114)
72 PF04277 OAD_gamma: Oxaloaceta 81.5 6.9 0.00015 22.9 5.1 7 16-22 12-18 (79)
73 PRK14750 kdpF potassium-transp 81.0 3.2 7E-05 22.2 3.2 19 13-31 4-22 (29)
74 KOG3637|consensus 80.9 2.1 4.5E-05 36.9 3.6 20 11-31 982-1001(1030)
75 PF09835 DUF2062: Uncharacteri 80.9 4.2 9.1E-05 26.4 4.4 30 6-36 121-150 (154)
76 COG3944 Capsular polysaccharid 80.8 2.1 4.6E-05 31.8 3.2 45 3-49 169-214 (226)
77 PF13807 GNVR: G-rich domain o 80.5 3.9 8.5E-05 24.3 3.8 24 4-27 56-79 (82)
78 PRK15083 PTS system mannitol-s 80.5 2.8 6.1E-05 33.7 4.1 31 7-37 313-343 (639)
79 COG5336 Uncharacterized protei 80.4 2.2 4.8E-05 29.0 3.0 16 6-21 48-63 (116)
80 PHA03265 envelope glycoprotein 80.3 0.57 1.2E-05 37.2 0.2 31 7-38 350-380 (402)
81 COG3190 FliO Flagellar biogene 80.0 4.1 9E-05 28.1 4.3 29 6-34 19-47 (137)
82 TIGR02507 MtrF tetrahydrometha 79.7 2.7 5.9E-05 25.9 3.0 21 5-25 36-56 (65)
83 PF09972 DUF2207: Predicted me 78.8 5.6 0.00012 29.0 4.9 27 10-36 229-255 (511)
84 PTZ00045 apical membrane antig 78.6 3.5 7.5E-05 34.3 4.1 27 11-37 518-544 (595)
85 PF09583 Phageshock_PspG: Phag 78.3 7.8 0.00017 24.0 4.7 31 5-35 23-64 (65)
86 PF11990 DUF3487: Protein of u 78.2 4.7 0.0001 26.7 4.0 9 11-19 35-43 (121)
87 PF10661 EssA: WXG100 protein 77.4 4.9 0.00011 27.3 4.0 23 9-31 119-141 (145)
88 PRK13823 conjugal transfer pro 77.1 4.3 9.4E-05 26.1 3.5 26 16-42 48-73 (94)
89 PF14851 FAM176: FAM176 family 76.8 4 8.6E-05 28.4 3.5 21 10-30 26-46 (153)
90 PF06365 CD34_antigen: CD34/Po 76.2 2.1 4.5E-05 31.0 2.0 44 14-59 106-153 (202)
91 PF08374 Protocadherin: Protoc 76.1 1.4 3E-05 32.7 1.1 22 9-30 38-59 (221)
92 PF04971 Lysis_S: Lysis protei 76.0 3.8 8.3E-05 25.5 2.9 28 8-35 36-63 (68)
93 PF02009 Rifin_STEVOR: Rifin/s 76.0 4.2 9.2E-05 30.6 3.7 34 3-36 255-288 (299)
94 PF10661 EssA: WXG100 protein 75.8 4.6 9.9E-05 27.4 3.5 25 6-30 120-144 (145)
95 PRK13415 flagella biosynthesis 75.2 6.6 0.00014 28.9 4.4 31 3-33 60-91 (219)
96 PF06024 DUF912: Nucleopolyhed 75.1 1.7 3.7E-05 27.6 1.2 32 13-44 66-97 (101)
97 PF07178 TraL: TraL protein; 75.0 11 0.00024 23.3 4.9 12 10-21 26-37 (95)
98 COG3105 Uncharacterized protei 74.9 0.95 2.1E-05 31.5 0.0 35 10-44 11-45 (138)
99 KOG3653|consensus 74.8 11 0.00023 31.2 5.9 30 9-38 157-186 (534)
100 PF06103 DUF948: Bacterial pro 74.5 5.3 0.00011 24.0 3.2 19 11-29 1-19 (90)
101 PF14316 DUF4381: Domain of un 74.5 3.5 7.7E-05 27.0 2.6 8 23-30 33-40 (146)
102 TIGR03647 Na_symport_sm probab 74.4 3 6.4E-05 25.9 2.1 22 22-44 56-77 (77)
103 PRK13707 conjugal transfer pil 74.2 9.3 0.0002 24.5 4.5 13 27-39 56-68 (101)
104 PF10577 UPF0560: Uncharacteri 74.1 4.1 8.9E-05 34.9 3.5 28 4-31 272-299 (807)
105 COG3105 Uncharacterized protei 73.9 3.5 7.6E-05 28.7 2.6 16 6-21 11-26 (138)
106 PRK08600 putative monovalent c 73.9 7.9 0.00017 25.5 4.2 40 4-45 67-106 (113)
107 PRK10132 hypothetical protein; 73.7 4.3 9.4E-05 26.5 2.9 19 3-23 85-103 (108)
108 PF11808 DUF3329: Domain of un 73.7 8.4 0.00018 23.7 4.1 14 8-21 22-35 (90)
109 TIGR03546 conserved hypothetic 73.3 5.4 0.00012 27.4 3.4 26 10-35 110-138 (154)
110 TIGR01195 oadG_fam sodium pump 72.6 15 0.00032 22.7 4.9 18 17-34 16-34 (82)
111 TIGR00771 DcuC c4-dicarboxylat 72.6 6.7 0.00015 29.8 4.1 19 6-24 139-157 (388)
112 TIGR00351 narI respiratory nit 72.1 7.2 0.00016 27.8 3.9 29 8-36 88-116 (224)
113 TIGR01111 mtrA N5-methyltetrah 72.0 4 8.6E-05 30.6 2.6 25 4-28 213-237 (238)
114 COG3763 Uncharacterized protei 71.8 9 0.00019 24.1 3.8 25 10-34 6-31 (71)
115 TIGR02975 phageshock_pspG phag 71.3 14 0.00031 22.7 4.6 31 5-35 22-63 (64)
116 PRK00269 zipA cell division pr 71.2 5.8 0.00013 30.3 3.4 21 14-34 10-30 (293)
117 PF11014 DUF2852: Protein of u 71.0 12 0.00027 25.1 4.6 29 3-31 8-36 (115)
118 PRK09094 putative monovalent c 71.0 13 0.00028 24.6 4.7 35 8-44 75-109 (114)
119 TIGR00297 conserved hypothetic 70.8 7.6 0.00016 28.5 3.9 13 4-16 27-39 (237)
120 PRK10483 tryptophan permease; 70.8 7.1 0.00015 30.4 3.9 24 11-35 350-373 (414)
121 PF00558 Vpu: Vpu protein; In 70.4 6.7 0.00015 24.9 3.1 20 4-24 3-22 (81)
122 PF03381 CDC50: LEM3 (ligand-e 70.4 7.3 0.00016 28.5 3.7 28 11-38 247-275 (278)
123 PRK07375 putative monovalent c 70.3 14 0.00029 23.8 4.6 40 6-47 71-110 (112)
124 PF11712 Vma12: Endoplasmic re 69.8 9.6 0.00021 25.0 3.9 31 7-37 110-140 (142)
125 PRK10381 LPS O-antigen length 69.7 8.4 0.00018 29.4 4.0 18 10-27 342-359 (377)
126 PF11808 DUF3329: Domain of un 69.7 14 0.0003 22.7 4.4 25 6-30 16-40 (90)
127 TIGR02866 CoxB cytochrome c ox 69.6 7.9 0.00017 26.6 3.6 9 28-36 34-42 (201)
128 COG2181 NarI Nitrate reductase 69.5 3.5 7.7E-05 30.4 1.9 27 8-34 88-114 (228)
129 PF15468 DUF4636: Domain of un 69.1 9.7 0.00021 28.7 4.2 33 7-39 34-71 (243)
130 PF03616 Glt_symporter: Sodium 69.0 11 0.00024 28.6 4.5 25 8-32 162-186 (368)
131 TIGR03521 GldG gliding-associa 68.8 5.9 0.00013 31.2 3.1 21 15-35 529-549 (552)
132 PF10717 ODV-E18: Occlusion-de 68.8 5.5 0.00012 25.8 2.5 18 13-30 29-46 (85)
133 KOG4818|consensus 68.7 3.9 8.5E-05 32.2 2.1 22 10-31 331-352 (362)
134 PF09472 MtrF: Tetrahydrometha 68.6 9.3 0.0002 23.3 3.3 26 4-29 31-56 (64)
135 PF06667 PspB: Phage shock pro 68.6 11 0.00024 23.4 3.7 32 13-44 9-40 (75)
136 PF11157 DUF2937: Protein of u 68.4 11 0.00024 25.9 4.1 9 7-15 137-145 (167)
137 PF05440 MtrB: Tetrahydrometha 67.7 7.5 0.00016 25.5 3.0 19 7-25 72-90 (97)
138 PRK11486 flagellar biosynthesi 67.6 9.7 0.00021 25.7 3.6 24 11-34 18-41 (124)
139 PF05568 ASFV_J13L: African sw 67.5 11 0.00025 27.2 4.1 26 6-31 26-52 (189)
140 PHA03281 envelope glycoprotein 67.1 6.1 0.00013 33.2 3.0 22 7-28 556-577 (642)
141 PF06679 DUF1180: Protein of u 67.0 7.7 0.00017 27.1 3.1 32 15-46 100-135 (163)
142 PF03597 CcoS: Cytochrome oxid 66.9 14 0.00031 20.8 3.7 27 15-44 8-34 (45)
143 PLN02731 Putative lipid phosph 66.8 8.1 0.00018 29.6 3.4 49 10-58 244-297 (333)
144 PF02529 PetG: Cytochrome B6-F 66.7 13 0.00028 20.9 3.4 24 7-30 6-29 (37)
145 PF04284 DUF441: Protein of un 66.5 6 0.00013 27.3 2.4 19 2-20 103-121 (140)
146 PF15122 TMEM206: TMEM206 prot 66.4 4.7 0.0001 31.0 2.1 24 16-39 255-289 (298)
147 TIGR01006 polys_exp_MPA1 polys 66.3 14 0.0003 25.2 4.2 25 4-28 172-196 (226)
148 PRK10404 hypothetical protein; 66.1 8 0.00017 24.9 2.8 19 3-23 79-97 (101)
149 TIGR03017 EpsF chain length de 66.1 10 0.00022 28.0 3.8 27 4-30 394-420 (444)
150 PF15050 SCIMP: SCIMP protein 66.1 16 0.00036 25.3 4.5 28 11-40 14-41 (133)
151 TIGR03510 XapX XapX domain. Th 66.0 8.4 0.00018 22.4 2.7 16 6-21 2-17 (49)
152 PF15176 LRR19-TM: Leucine-ric 65.6 12 0.00027 24.8 3.7 21 9-29 18-38 (102)
153 PRK12658 putative monovalent c 65.3 17 0.00037 24.4 4.4 35 8-44 75-109 (125)
154 PF05795 Plasmodium_Vir: Plasm 65.1 5.2 0.00011 27.8 2.0 16 16-31 288-303 (354)
155 PF06697 DUF1191: Protein of u 65.1 3.6 7.9E-05 31.1 1.3 28 8-35 217-244 (278)
156 COG4064 MtrG Tetrahydromethano 64.6 13 0.00028 23.6 3.5 19 8-26 50-68 (75)
157 PF14927 Neurensin: Neurensin 64.4 9.8 0.00021 26.1 3.2 25 6-30 99-123 (140)
158 PTZ00046 rifin; Provisional 64.3 11 0.00024 29.5 3.8 33 3-35 314-349 (358)
159 PRK10983 putative inner membra 64.2 17 0.00037 27.3 4.7 27 5-31 314-342 (368)
160 PF13940 Ldr_toxin: Toxin Ldr, 63.9 6.8 0.00015 21.7 1.9 13 8-20 16-28 (35)
161 PF13268 DUF4059: Protein of u 63.1 10 0.00022 23.9 2.8 14 25-38 25-39 (72)
162 PF12597 DUF3767: Protein of u 62.8 5.2 0.00011 26.4 1.5 19 3-21 41-59 (118)
163 TIGR01010 BexC_CtrB_KpsE polys 62.7 22 0.00047 26.0 4.9 27 4-30 330-356 (362)
164 PHA03231 glycoprotein BALF4; P 62.4 12 0.00025 32.3 3.9 17 18-34 712-728 (829)
165 PF01940 DUF92: Integral membr 62.3 9.8 0.00021 27.6 3.0 11 8-18 21-31 (226)
166 TIGR00941 2a6301s03 Multicompo 62.0 18 0.00038 23.6 3.9 27 8-34 71-97 (104)
167 PF02480 Herpes_gE: Alphaherpe 62.0 2.6 5.6E-05 33.0 0.0 31 5-36 356-386 (439)
168 KOG1226|consensus 61.8 3.4 7.4E-05 35.3 0.7 21 11-31 716-736 (783)
169 TIGR01006 polys_exp_MPA1 polys 61.8 14 0.00031 25.1 3.6 22 6-27 178-199 (226)
170 TIGR01477 RIFIN variant surfac 61.8 13 0.00029 29.0 3.8 30 3-32 309-338 (353)
171 PF07172 GRP: Glycine rich pro 61.7 21 0.00046 22.7 4.2 15 14-28 7-21 (95)
172 PF13584 BatD: Oxygen toleranc 61.4 21 0.00045 26.9 4.7 20 11-30 428-447 (484)
173 PF12911 OppC_N: N-terminal TM 61.4 7.5 0.00016 21.2 1.8 21 9-29 18-38 (56)
174 COG5336 Uncharacterized protei 61.1 18 0.00038 24.6 3.9 17 5-21 51-67 (116)
175 COG1006 MnhC Multisubunit Na+/ 61.0 25 0.00053 23.4 4.5 38 8-47 74-111 (115)
176 cd06582 TM_PBP1_LivH_like Tran 60.8 23 0.0005 24.8 4.6 26 8-33 53-78 (272)
177 PF03988 DUF347: Repeat of Unk 60.8 20 0.00044 20.4 3.6 17 20-36 37-53 (55)
178 PF10731 Anophelin: Thrombin i 60.6 20 0.00043 22.2 3.8 29 14-44 6-37 (65)
179 PRK13108 prolipoprotein diacyl 60.4 12 0.00026 29.8 3.5 35 13-47 257-297 (460)
180 PF02687 FtsX: FtsX-like perme 60.3 27 0.00059 20.0 4.2 25 12-36 96-120 (121)
181 PRK08389 putative monovalent c 60.1 22 0.00048 23.0 4.1 36 7-44 73-108 (114)
182 PLN03150 hypothetical protein; 60.0 2.3 5E-05 33.8 -0.6 25 8-33 547-571 (623)
183 KOG3514|consensus 60.0 8.7 0.00019 35.0 2.8 26 9-34 1512-1538(1591)
184 PF12679 ABC2_membrane_2: ABC- 59.8 17 0.00037 24.2 3.6 23 14-36 254-276 (277)
185 PF13373 DUF2407_C: DUF2407 C- 59.5 17 0.00036 24.6 3.6 27 4-30 86-112 (140)
186 PF07019 Rab5ip: Rab5-interact 59.2 22 0.00047 21.2 3.7 11 8-18 10-20 (81)
187 PRK01026 tetrahydromethanopter 59.1 23 0.0005 22.5 3.9 13 9-21 51-63 (77)
188 PF04286 DUF445: Protein of un 58.9 9.6 0.00021 26.7 2.4 15 9-23 349-363 (367)
189 PF05659 RPW8: Arabidopsis bro 58.9 13 0.00028 25.1 3.0 21 7-27 2-22 (147)
190 PF05957 DUF883: Bacterial pro 58.9 12 0.00026 22.7 2.6 8 16-23 83-90 (94)
191 COG4575 ElaB Uncharacterized c 58.8 11 0.00025 25.0 2.6 13 12-24 89-101 (104)
192 TIGR00847 ccoS cytochrome oxid 58.8 24 0.00051 20.6 3.7 27 15-44 9-35 (51)
193 TIGR00837 araaP aromatic amino 58.3 22 0.00048 25.5 4.2 20 17-36 341-360 (381)
194 TIGR01432 QOXA cytochrome aa3 58.1 23 0.0005 24.8 4.2 12 24-35 40-51 (217)
195 TIGR02595 PEP_exosort PEP-CTER 58.1 17 0.00037 18.1 2.7 10 26-35 15-24 (26)
196 PRK10720 uracil transporter; P 58.1 8.3 0.00018 29.6 2.1 33 12-45 389-421 (428)
197 PF04210 MtrG: Tetrahydrometha 57.7 15 0.00033 23.0 2.9 9 13-21 48-56 (70)
198 KOG1094|consensus 57.6 18 0.00038 31.2 4.1 33 14-46 397-431 (807)
199 PRK10740 branched-chain amino 57.4 25 0.00054 25.6 4.4 28 7-34 74-101 (308)
200 PF03672 UPF0154: Uncharacteri 57.3 21 0.00046 21.8 3.5 20 15-34 4-24 (64)
201 PF10032 Pho88: Phosphate tran 57.2 53 0.0011 23.4 6.0 46 1-46 23-69 (192)
202 PF00974 Rhabdo_glycop: Rhabdo 57.1 3.5 7.6E-05 32.7 0.0 42 7-48 454-496 (501)
203 PF09802 Sec66: Preprotein tra 56.8 14 0.00031 26.4 3.1 23 15-37 12-34 (190)
204 PRK14766 lipoprotein signal pe 56.8 12 0.00025 26.9 2.6 21 14-34 164-184 (201)
205 PF02665 Nitrate_red_gam: Nitr 56.5 26 0.00055 24.7 4.3 28 8-35 87-114 (222)
206 TIGR02976 phageshock_pspB phag 56.2 25 0.00053 21.8 3.7 24 12-35 8-31 (75)
207 cd07912 Tweety_N N-terminal do 56.2 21 0.00045 28.1 4.1 22 9-31 43-64 (418)
208 PRK09664 tryptophan permease T 56.0 19 0.00042 28.1 3.9 24 12-36 352-375 (415)
209 PRK07946 putative monovalent c 56.0 45 0.00098 23.5 5.4 28 8-35 75-102 (163)
210 PF04306 DUF456: Protein of un 55.8 32 0.00069 22.9 4.4 21 17-37 83-103 (140)
211 KOG4056|consensus 55.5 15 0.00033 25.7 2.9 19 13-31 11-29 (143)
212 PF10066 DUF2304: Uncharacteri 55.5 19 0.00041 22.9 3.2 20 16-35 7-26 (115)
213 PRK01026 tetrahydromethanopter 55.3 22 0.00047 22.6 3.4 17 9-25 47-63 (77)
214 TIGR02762 TraL_TIGR type IV co 55.2 21 0.00044 22.4 3.3 7 11-17 31-37 (95)
215 COG3115 ZipA Cell division pro 55.1 14 0.00031 28.8 3.0 32 14-46 9-40 (324)
216 PLN03112 cytochrome P450 famil 54.7 17 0.00037 27.2 3.2 25 14-38 4-29 (514)
217 PRK09497 potB spermidine/putre 54.6 30 0.00065 24.2 4.3 19 25-43 267-285 (285)
218 PHA03283 envelope glycoprotein 54.6 23 0.0005 29.4 4.2 41 17-61 407-450 (542)
219 PF11511 RhodobacterPufX: Intr 54.6 43 0.00093 20.8 4.5 12 43-54 54-65 (67)
220 PF03229 Alpha_GJ: Alphavirus 54.3 27 0.00058 24.1 3.9 14 18-31 96-109 (126)
221 TIGR03750 conj_TIGR03750 conju 54.2 26 0.00056 23.2 3.7 7 32-38 74-80 (111)
222 KOG3540|consensus 54.2 20 0.00044 30.0 3.9 28 4-31 543-572 (615)
223 PF06040 Adeno_E3: Adenovirus 54.2 7.5 0.00016 26.8 1.2 24 7-30 91-120 (127)
224 TIGR03750 conj_TIGR03750 conju 54.0 33 0.00071 22.7 4.2 10 10-19 31-40 (111)
225 COG4327 Predicted membrane pro 53.8 28 0.00062 23.2 3.9 23 22-45 66-88 (101)
226 PF13858 DUF4199: Protein of u 53.7 25 0.00054 22.5 3.5 17 20-36 40-56 (163)
227 TIGR03007 pepcterm_ChnLen poly 53.5 23 0.00049 26.8 3.8 27 4-30 411-437 (498)
228 PRK00965 tetrahydromethanopter 53.5 18 0.00039 23.6 2.9 23 6-28 72-94 (96)
229 PRK10644 arginine:agmatin anti 53.4 28 0.00061 25.8 4.2 15 31-45 427-441 (445)
230 PF06809 NPDC1: Neural prolife 53.4 7.3 0.00016 30.5 1.2 25 10-34 202-226 (341)
231 PF10779 XhlA: Haemolysin XhlA 53.4 21 0.00044 21.1 2.9 16 7-22 53-68 (71)
232 KOG3030|consensus 53.0 25 0.00054 26.8 3.9 24 10-33 243-266 (317)
233 TIGR03024 arch_pef_cterm PEF-C 52.9 18 0.0004 18.7 2.3 7 24-30 15-21 (26)
234 PF01618 MotA_ExbB: MotA/TolQ/ 52.7 13 0.00029 23.8 2.2 19 13-31 105-123 (139)
235 PF05440 MtrB: Tetrahydrometha 52.7 23 0.00049 23.2 3.3 24 4-27 73-96 (97)
236 PF14219 DUF4328: Domain of un 52.7 23 0.00049 23.4 3.3 28 9-36 23-50 (171)
237 TIGR01149 mtrG N5-methyltetrah 52.6 26 0.00056 22.0 3.3 11 12-22 47-57 (70)
238 PF07214 DUF1418: Protein of u 52.4 39 0.00085 22.2 4.3 24 9-32 44-67 (96)
239 PRK10525 cytochrome o ubiquino 52.2 4.4 9.6E-05 30.8 -0.2 15 22-36 59-73 (315)
240 PRK11486 flagellar biosynthesi 51.6 25 0.00055 23.7 3.4 24 10-33 20-43 (124)
241 PRK06007 fliF flagellar MS-rin 51.5 26 0.00057 28.0 4.0 19 17-35 446-464 (542)
242 KOG3208|consensus 51.4 19 0.00041 26.9 3.1 17 15-31 213-229 (231)
243 TIGR03017 EpsF chain length de 51.1 24 0.00053 26.1 3.6 21 6-26 400-420 (444)
244 TIGR01495 ETRAMP Plasmodium ri 51.0 22 0.00047 22.4 2.9 12 27-38 71-82 (85)
245 COG1622 CyoA Heme/copper-type 51.0 32 0.00069 25.2 4.1 25 11-35 40-64 (247)
246 PRK08388 putative monovalent c 50.6 26 0.00056 22.9 3.3 34 9-44 80-113 (119)
247 PF07695 7TMR-DISM_7TM: 7TM di 50.1 38 0.00082 21.3 3.9 24 10-33 3-26 (205)
248 TIGR03546 conserved hypothetic 50.1 33 0.00071 23.6 3.9 22 6-27 110-135 (154)
249 PF05473 Herpes_UL45: UL45 pro 50.1 31 0.00066 24.3 3.8 18 8-25 50-67 (200)
250 PRK10473 multidrug efflux syst 50.0 49 0.0011 23.1 4.8 9 41-49 381-389 (392)
251 PF09972 DUF2207: Predicted me 49.9 30 0.00064 25.3 3.8 41 7-47 229-271 (511)
252 PRK13876 conjugal transfer cou 49.7 28 0.00062 28.7 4.1 24 9-33 76-99 (663)
253 KOG3054|consensus 49.7 26 0.00056 27.1 3.6 13 19-31 13-25 (299)
254 PF04286 DUF445: Protein of un 49.7 21 0.00046 25.0 3.0 20 11-30 347-366 (367)
255 PRK12661 putative monovalent c 49.5 34 0.00074 23.3 3.9 35 8-44 100-134 (140)
256 PF07010 Endomucin: Endomucin; 49.4 47 0.001 25.3 4.9 39 10-49 189-230 (259)
257 CHL00008 petG cytochrome b6/f 49.3 45 0.00098 18.7 3.7 23 8-30 7-29 (37)
258 PRK13022 secF preprotein trans 49.2 50 0.0011 24.2 4.9 31 6-36 256-286 (289)
259 PF12676 DUF3796: Protein of u 49.1 34 0.00073 22.5 3.7 16 18-33 96-111 (118)
260 PF04210 MtrG: Tetrahydrometha 48.9 35 0.00075 21.4 3.5 20 8-27 47-66 (70)
261 TIGR00910 2A0307_GadC glutamat 48.8 48 0.0011 25.5 5.0 10 24-33 451-460 (507)
262 PF04892 VanZ: VanZ like famil 48.6 24 0.00052 21.7 2.8 19 16-34 114-132 (133)
263 PF08114 PMP1_2: ATPase proteo 48.6 12 0.00026 21.6 1.3 13 19-31 19-31 (43)
264 PF12729 4HB_MCP_1: Four helix 48.6 48 0.001 19.9 4.1 24 11-34 9-32 (181)
265 cd03384 PAP2_wunen PAP2, wunen 48.5 16 0.00035 24.0 2.1 14 10-23 135-148 (150)
266 PF12072 DUF3552: Domain of un 48.1 42 0.00091 23.2 4.2 16 9-24 5-20 (201)
267 PRK13855 type IV secretion sys 48.1 14 0.0003 29.2 2.0 26 3-34 27-52 (376)
268 PRK14780 lipoprotein signal pe 47.9 29 0.00062 26.3 3.6 13 14-26 207-219 (263)
269 COG3197 FixS Uncharacterized p 47.9 30 0.00065 20.9 3.0 24 15-41 9-32 (58)
270 PF04246 RseC_MucC: Positive r 47.7 47 0.001 21.2 4.1 8 28-35 113-120 (135)
271 cd03383 PAP2_diacylglycerolkin 47.5 27 0.00059 22.2 3.0 14 10-23 91-104 (109)
272 PF11694 DUF3290: Protein of u 47.5 40 0.00086 23.0 3.9 20 21-40 27-46 (149)
273 PF13994 PgaD: PgaD-like prote 47.5 38 0.00082 22.2 3.7 26 6-31 60-85 (138)
274 PF03222 Trp_Tyr_perm: Tryptop 47.3 27 0.00059 26.3 3.4 26 11-37 342-367 (394)
275 COG3630 OadG Na+-transporting 47.2 30 0.00064 22.3 3.1 32 16-49 18-50 (84)
276 PRK15060 L-dehydroascorbate tr 47.1 22 0.00047 27.8 2.9 29 7-35 168-196 (425)
277 PF07314 DUF1461: Protein of u 46.9 41 0.00089 22.9 4.0 26 12-37 95-120 (181)
278 PF02936 COX4: Cytochrome c ox 46.8 31 0.00066 23.3 3.3 20 8-27 75-94 (142)
279 TIGR03007 pepcterm_ChnLen poly 46.8 30 0.00064 26.2 3.5 21 6-26 417-437 (498)
280 PF04906 Tweety: Tweety; Inte 46.7 29 0.00062 26.7 3.5 21 10-31 24-44 (406)
281 PF03908 Sec20: Sec20; InterP 46.6 26 0.00056 21.3 2.7 16 16-31 75-90 (92)
282 COG4736 CcoQ Cbb3-type cytochr 46.5 19 0.00041 21.7 2.0 8 32-39 30-37 (60)
283 PF09490 CbtA: Probable cobalt 46.5 27 0.00059 25.2 3.2 24 4-27 4-27 (227)
284 PRK13275 mtrF tetrahydromethan 46.2 39 0.00084 20.8 3.4 24 5-28 32-55 (67)
285 PF06808 DctM: DctM-like trans 46.1 17 0.00037 27.6 2.2 27 10-36 171-197 (416)
286 TIGR01433 CyoA cytochrome o ub 45.8 7.5 0.00016 27.8 0.2 10 26-35 51-60 (226)
287 KOG4433|consensus 45.8 35 0.00076 28.3 4.0 31 5-35 43-73 (526)
288 PRK01844 hypothetical protein; 45.7 56 0.0012 20.5 4.1 21 14-34 10-31 (72)
289 PRK10847 hypothetical protein; 45.6 61 0.0013 22.5 4.7 8 28-35 206-213 (219)
290 PF10954 DUF2755: Protein of u 45.4 25 0.00054 23.4 2.6 33 3-35 62-99 (100)
291 KOG4608|consensus 45.2 6.8 0.00015 29.9 -0.1 34 5-38 183-216 (270)
292 TIGR02507 MtrF tetrahydrometha 44.9 39 0.00084 20.8 3.2 26 4-29 31-56 (65)
293 PRK00665 petG cytochrome b6-f 44.8 56 0.0012 18.3 3.6 10 12-21 7-16 (37)
294 PRK04125 murein hydrolase regu 44.6 60 0.0013 22.2 4.5 14 9-22 97-110 (141)
295 PRK00573 lspA signal peptidase 44.6 42 0.00092 24.0 3.9 23 13-35 159-181 (184)
296 PRK14789 lipoprotein signal pe 44.6 39 0.00085 24.0 3.7 21 18-38 135-155 (191)
297 TIGR02115 potass_kdpF K+-trans 44.5 34 0.00073 17.7 2.5 14 17-30 3-16 (26)
298 PF11755 DUF3311: Protein of u 44.4 43 0.00093 19.8 3.3 16 19-34 39-54 (66)
299 KOG1025|consensus 44.4 35 0.00075 30.7 3.9 27 6-32 630-656 (1177)
300 PF02355 SecD_SecF: Protein ex 44.0 71 0.0015 22.1 4.8 31 5-35 159-189 (189)
301 PF06081 DUF939: Bacterial pro 43.7 70 0.0015 20.9 4.6 14 8-21 56-69 (141)
302 KOG2493|consensus 43.4 93 0.002 25.8 6.0 41 7-47 232-272 (512)
303 PRK07118 ferredoxin; Validated 43.4 35 0.00077 25.0 3.4 23 5-27 3-25 (280)
304 cd03390 PAP2_containing_1_like 43.3 43 0.00094 22.4 3.6 23 7-29 14-36 (193)
305 PF15345 TMEM51: Transmembrane 43.3 30 0.00065 25.8 3.0 22 17-38 68-89 (233)
306 PRK00523 hypothetical protein; 43.2 62 0.0013 20.2 4.0 22 13-34 10-32 (72)
307 COG4063 MtrA Tetrahydromethano 43.0 21 0.00046 26.7 2.2 27 3-29 211-237 (238)
308 PF04639 Baculo_E56: Baculovir 43.0 10 0.00022 29.3 0.6 19 13-31 281-299 (305)
309 PF09835 DUF2062: Uncharacteri 42.9 68 0.0015 20.7 4.4 29 9-37 120-148 (154)
310 PF14828 Amnionless: Amnionles 42.9 8.4 0.00018 30.2 0.1 24 6-29 335-358 (437)
311 PF11980 DUF3481: Domain of un 42.8 29 0.00062 22.6 2.5 16 8-23 17-32 (87)
312 PRK14780 lipoprotein signal pe 42.7 72 0.0016 24.2 5.0 13 18-30 207-219 (263)
313 KOG4491|consensus 42.7 21 0.00045 27.7 2.2 15 8-22 65-79 (323)
314 COG1288 Predicted membrane pro 42.6 23 0.00049 29.0 2.4 28 15-42 224-251 (481)
315 PF05478 Prominin: Prominin; 42.5 36 0.00077 28.2 3.6 24 8-31 91-118 (806)
316 PF13886 DUF4203: Domain of un 42.5 61 0.0013 22.1 4.3 11 11-21 59-69 (210)
317 PF03967 PRCH: Photosynthetic 42.4 59 0.0013 22.5 4.2 26 19-45 19-45 (136)
318 PF01098 FTSW_RODA_SPOVE: Cell 42.4 50 0.0011 24.2 4.0 17 9-25 266-282 (358)
319 TIGR00844 c_cpa1 na(+)/h(+) an 42.3 51 0.0011 28.4 4.5 26 7-32 209-234 (810)
320 PRK15471 chain length determin 42.3 50 0.0011 24.9 4.1 17 10-26 298-314 (325)
321 TIGR01149 mtrG N5-methyltetrah 42.1 35 0.00076 21.4 2.8 21 7-27 46-66 (70)
322 cd03395 PAP2_like_4 PAP2_like_ 42.1 45 0.00097 21.9 3.5 16 9-24 155-170 (177)
323 PF01864 DUF46: Putative integ 42.0 25 0.00053 24.7 2.3 19 5-23 52-70 (175)
324 PF04279 IspA: Intracellular s 41.8 42 0.00091 23.1 3.4 28 7-34 19-46 (176)
325 PF07798 DUF1640: Protein of u 41.7 36 0.00077 23.0 3.0 17 15-31 158-174 (177)
326 TIGR00851 mtlA PTS system, man 41.7 49 0.0011 25.0 4.0 21 8-28 306-326 (338)
327 TIGR00815 sulP high affinity s 41.6 38 0.00082 26.6 3.5 19 8-26 403-421 (563)
328 COG2456 Uncharacterized conser 41.4 42 0.00092 23.0 3.3 21 15-35 13-33 (121)
329 PRK13747 putative mercury resi 41.3 49 0.0011 21.2 3.4 16 6-21 34-49 (78)
330 PF01569 PAP2: PAP2 superfamil 41.1 17 0.00038 21.5 1.3 11 10-20 106-116 (129)
331 PRK01741 cell division protein 41.1 22 0.00049 27.6 2.2 18 14-31 8-25 (332)
332 PF04906 Tweety: Tweety; Inte 41.1 67 0.0015 24.7 4.7 34 12-45 368-403 (406)
333 PRK10478 putative PTS system f 41.1 31 0.00066 26.8 2.9 19 10-28 316-334 (359)
334 PHA03099 epidermal growth fact 41.1 21 0.00046 24.9 1.8 20 10-31 105-124 (139)
335 PF11286 DUF3087: Protein of u 41.0 33 0.00072 24.3 2.8 15 17-31 55-69 (165)
336 TIGR01005 eps_transp_fam exopo 40.9 54 0.0012 26.4 4.3 27 4-30 428-454 (754)
337 PF05399 EVI2A: Ectropic viral 40.9 42 0.00092 25.1 3.5 20 9-28 130-149 (227)
338 COG4603 ABC-type uncharacteriz 40.5 76 0.0017 24.5 4.9 19 33-51 166-184 (356)
339 COG4214 XylH ABC-type xylose t 40.5 45 0.00098 26.7 3.8 33 10-42 180-212 (394)
340 PRK15238 inner membrane transp 40.3 39 0.00086 25.6 3.3 17 22-38 479-495 (496)
341 COG5416 Uncharacterized integr 40.1 87 0.0019 20.7 4.5 28 7-34 62-89 (98)
342 PF11174 DUF2970: Protein of u 40.0 42 0.00091 19.7 2.7 16 10-25 34-49 (56)
343 PF12297 EVC2_like: Ellis van 39.9 48 0.001 26.8 3.8 22 7-28 67-88 (429)
344 PHA03286 envelope glycoprotein 39.8 66 0.0014 26.5 4.7 8 32-39 419-426 (492)
345 PF03825 Nuc_H_symport: Nucleo 39.8 52 0.0011 24.7 3.9 6 32-37 395-400 (400)
346 cd01324 cbb3_Oxidase_CcoQ Cyto 39.7 53 0.0011 18.5 3.1 22 21-42 20-41 (48)
347 PHA03049 IMV membrane protein; 39.6 69 0.0015 20.0 3.8 11 24-36 17-27 (68)
348 PF06072 Herpes_US9: Alphaherp 39.6 46 0.001 20.3 2.9 25 6-30 34-58 (60)
349 PF02430 AMA-1: Apical membran 39.5 9.8 0.00021 31.0 0.0 23 9-31 431-453 (471)
350 COG0671 PgpB Membrane-associat 39.4 43 0.00094 20.6 2.9 14 10-23 193-206 (232)
351 PF03302 VSP: Giardia variant- 39.2 9.5 0.00021 29.2 -0.1 27 3-29 365-393 (397)
352 PF02038 ATP1G1_PLM_MAT8: ATP1 39.2 33 0.00072 20.1 2.2 11 11-21 16-26 (50)
353 PF06084 Cytomega_TRL10: Cytom 39.1 13 0.00029 25.9 0.6 27 5-31 55-81 (150)
354 PF03239 FTR1: Iron permease F 39.0 57 0.0012 23.9 3.9 17 5-21 167-183 (306)
355 PRK14726 bifunctional preprote 39.0 89 0.0019 26.9 5.5 20 6-25 801-820 (855)
356 PRK05113 electron transport co 39.0 49 0.0011 22.9 3.4 22 6-27 4-25 (191)
357 PF06363 Picorna_P3A: Picornav 38.9 48 0.001 22.0 3.2 23 15-37 74-96 (100)
358 PRK09546 zntB zinc transporter 38.9 37 0.00081 24.5 2.9 12 18-29 306-317 (324)
359 COG4854 Predicted membrane pro 38.8 38 0.00081 23.4 2.7 17 2-18 8-24 (126)
360 PF11980 DUF3481: Domain of un 38.7 41 0.00089 21.9 2.8 31 6-36 19-51 (87)
361 PF01292 Ni_hydr_CYTB: Prokary 38.5 56 0.0012 20.8 3.4 18 14-31 47-64 (182)
362 PRK09510 tolA cell envelope in 38.5 35 0.00076 26.8 2.9 19 12-30 13-31 (387)
363 PF09604 Potass_KdpF: F subuni 38.4 50 0.0011 16.7 2.6 14 17-30 4-17 (25)
364 PF02674 Colicin_V: Colicin V 38.3 56 0.0012 20.3 3.4 14 9-22 101-114 (146)
365 PRK09430 djlA Dna-J like membr 38.3 39 0.00085 24.5 3.0 8 15-22 19-26 (267)
366 PF05084 GRA6: Granule antigen 38.2 50 0.0011 24.3 3.5 22 10-31 153-174 (215)
367 PF02117 7TM_GPCR_Sra: Serpent 38.2 57 0.0012 24.1 3.8 34 12-45 192-225 (328)
368 TIGR02711 symport_actP cation/ 38.1 38 0.00082 26.6 3.0 19 8-26 459-477 (549)
369 cd03391 PAP2_containing_2_like 38.1 26 0.00057 23.2 1.9 14 10-23 144-157 (159)
370 PF09594 DUF2029: Protein of u 38.0 66 0.0014 21.0 3.8 19 16-34 201-219 (241)
371 PLN03150 hypothetical protein; 38.0 5.8 0.00012 31.6 -1.5 33 6-38 541-573 (623)
372 PF03083 MtN3_slv: Sugar efflu 37.8 7.1 0.00015 23.0 -0.8 19 15-33 66-85 (87)
373 PF03229 Alpha_GJ: Alphavirus 37.7 91 0.002 21.5 4.5 17 15-31 97-113 (126)
374 PHA03296 envelope glycoprotein 37.7 62 0.0014 28.1 4.4 36 6-41 769-807 (814)
375 PF13515 FUSC_2: Fusaric acid 37.7 44 0.00096 20.0 2.7 13 9-21 42-54 (128)
376 PF00033 Cytochrom_B_N: Cytoch 37.6 58 0.0013 20.5 3.4 21 14-34 51-71 (188)
377 PRK02919 oxaloacetate decarbox 37.5 1E+02 0.0022 19.2 4.4 6 11-16 15-20 (82)
378 KOG3516|consensus 37.5 33 0.00072 31.2 2.8 43 8-50 1239-1281(1306)
379 PF15330 SIT: SHP2-interacting 37.3 1.1E+02 0.0023 19.9 4.6 29 11-39 6-34 (107)
380 COG4059 MtrE Tetrahydromethano 37.3 41 0.00089 25.9 3.0 7 14-20 266-272 (304)
381 PF14991 MLANA: Protein melan- 37.2 5.2 0.00011 27.2 -1.6 14 18-31 34-47 (118)
382 PRK10440 iron-enterobactin tra 37.0 40 0.00087 25.5 2.9 13 13-25 308-320 (330)
383 TIGR00544 lgt prolipoprotein d 37.0 64 0.0014 23.5 3.9 25 13-37 249-273 (278)
384 COG1291 MotA Flagellar motor c 37.0 82 0.0018 23.8 4.5 29 2-30 174-202 (266)
385 PF10361 DUF2434: Protein of u 37.0 59 0.0013 25.1 3.8 21 11-31 48-68 (296)
386 COG2213 MtlA Phosphotransferas 37.0 43 0.00093 27.4 3.2 36 3-38 309-344 (472)
387 PF06697 DUF1191: Protein of u 36.8 4.6 0.0001 30.5 -2.1 29 10-38 215-243 (278)
388 KOG1219|consensus 36.7 32 0.0007 34.3 2.7 35 12-46 3996-4030(4289)
389 PF06422 PDR_CDR: CDR ABC tran 36.7 76 0.0017 19.9 3.8 14 9-22 53-66 (103)
390 TIGR01944 rnfB electron transp 36.6 57 0.0012 21.8 3.4 20 7-26 3-22 (165)
391 COG3086 RseC Positive regulato 36.5 51 0.0011 23.2 3.2 23 17-39 109-131 (150)
392 PRK04125 murein hydrolase regu 36.4 81 0.0018 21.5 4.1 27 10-36 94-121 (141)
393 KOG4580|consensus 36.4 78 0.0017 21.4 3.9 16 26-41 65-83 (112)
394 TIGR02978 phageshock_pspC phag 36.2 98 0.0021 20.5 4.4 12 3-14 9-20 (121)
395 PRK11086 sensory histidine kin 36.1 75 0.0016 23.1 4.1 24 11-34 183-206 (542)
396 COG2268 Uncharacterized protei 36.0 26 0.00057 28.9 1.9 18 10-27 13-30 (548)
397 PF14986 DUF4514: Domain of un 36.0 50 0.0011 20.2 2.7 33 11-43 24-58 (61)
398 PF12072 DUF3552: Domain of un 35.9 71 0.0015 22.0 3.8 21 11-31 3-23 (201)
399 PRK09543 znuB high-affinity zi 35.4 69 0.0015 22.9 3.8 24 8-31 7-30 (261)
400 PRK14781 lipoprotein signal pe 35.4 41 0.00089 22.7 2.5 14 18-31 131-144 (153)
401 COG1108 ZnuB ABC-type Mn2+/Zn2 35.4 68 0.0015 23.8 3.8 26 7-32 15-40 (274)
402 PTZ00229 variable surface prot 35.3 14 0.00031 28.3 0.3 21 11-31 244-264 (317)
403 PF13829 DUF4191: Domain of un 35.2 69 0.0015 23.6 3.8 17 15-31 57-73 (224)
404 PRK12430 putative bifunctional 35.2 57 0.0012 26.0 3.6 26 9-34 21-46 (379)
405 PRK15348 type III secretion sy 35.1 70 0.0015 23.6 3.9 17 18-34 232-248 (249)
406 TIGR01726 HEQRo_perm_3TM amine 35.0 57 0.0012 19.6 2.9 14 8-21 18-31 (99)
407 COG4395 Uncharacterized protei 34.9 67 0.0015 24.5 3.8 13 5-17 31-43 (281)
408 PF02116 STE2: Fungal pheromon 34.8 33 0.00071 25.6 2.1 31 5-35 32-62 (284)
409 PF05473 Herpes_UL45: UL45 pro 34.7 72 0.0016 22.5 3.8 26 5-30 51-76 (200)
410 PF09527 ATPase_gene1: Putativ 34.7 82 0.0018 17.3 3.3 14 18-31 39-52 (55)
411 PRK11660 putative transporter; 34.6 72 0.0016 25.2 4.1 32 6-37 422-453 (568)
412 PF10247 Romo1: Reactive mitoc 34.6 58 0.0013 19.9 2.9 32 6-37 7-38 (67)
413 COG0730 Predicted permeases [G 34.6 1.2E+02 0.0026 20.9 4.8 11 8-18 81-91 (258)
414 PRK15132 tyrosine transporter 34.5 1E+02 0.0023 23.7 4.9 26 10-36 338-363 (403)
415 COG4794 EscS Type III secretor 34.5 53 0.0012 21.4 2.8 19 3-21 22-40 (89)
416 PF04226 Transgly_assoc: Trans 34.5 80 0.0017 17.6 3.2 12 22-33 36-47 (48)
417 PF03189 Otopetrin: Otopetrin; 34.4 32 0.00069 26.8 2.1 26 5-30 237-262 (441)
418 PF11057 Cortexin: Cortexin of 34.3 49 0.0011 21.3 2.6 16 19-34 36-51 (81)
419 PF01313 Bac_export_3: Bacteri 34.2 53 0.0012 20.3 2.7 18 4-21 20-37 (76)
420 TIGR01005 eps_transp_fam exopo 34.0 60 0.0013 26.1 3.6 25 6-31 434-458 (754)
421 PF01788 PsbJ: PsbJ; InterPro 33.9 93 0.002 17.6 3.5 18 4-21 9-26 (40)
422 PRK13021 secF preprotein trans 33.8 1E+02 0.0022 23.0 4.6 21 5-25 254-274 (297)
423 PF14241 DUF4341: Domain of un 33.8 68 0.0015 18.7 3.0 19 8-26 4-22 (62)
424 PF00737 PsbH: Photosystem II 33.7 97 0.0021 18.4 3.6 27 4-30 20-46 (52)
425 PF02937 COX6C: Cytochrome c o 33.7 84 0.0018 19.2 3.5 26 9-34 20-45 (73)
426 PRK05326 potassium/proton anti 33.7 60 0.0013 25.4 3.5 15 9-23 194-208 (562)
427 TIGR02865 spore_II_E stage II 33.6 36 0.00078 28.3 2.4 18 4-21 193-210 (764)
428 TIGR01113 mtrE N5-methyltetrah 33.6 73 0.0016 24.5 3.8 14 15-28 256-269 (283)
429 TIGR00210 gltS sodium--glutama 33.5 79 0.0017 24.5 4.1 27 7-33 161-187 (398)
430 PRK13661 hypothetical protein; 33.5 1.2E+02 0.0026 21.2 4.7 34 9-42 147-181 (182)
431 PF07235 DUF1427: Protein of u 33.3 31 0.00068 22.5 1.6 12 10-21 7-18 (90)
432 PLN02250 lipid phosphate phosp 33.3 54 0.0012 24.8 3.1 13 10-22 226-238 (314)
433 PF03817 MadL: Malonate transp 33.2 81 0.0018 21.7 3.7 15 7-21 14-28 (125)
434 PRK09412 anaerobic C4-dicarbox 33.2 78 0.0017 24.4 4.0 32 9-41 168-201 (433)
435 cd06574 TM_PBP1_branched-chain 33.2 81 0.0017 22.1 3.8 12 8-19 52-63 (266)
436 COG0659 SUL1 Sulfate permease 33.2 70 0.0015 25.8 3.8 21 7-27 392-412 (554)
437 TIGR00807 malonate_madL malona 33.2 82 0.0018 21.7 3.7 15 7-21 14-28 (125)
438 PRK10884 SH3 domain-containing 33.0 27 0.00059 24.9 1.4 12 16-27 183-194 (206)
439 PF13955 Fst_toxin: Toxin Fst, 32.9 67 0.0014 16.0 2.4 12 10-21 4-15 (21)
440 TIGR02459 CbtB cobalt transpor 32.9 1E+02 0.0022 18.7 3.7 21 8-28 16-36 (60)
441 cd00925 Cyt_c_Oxidase_VIa Cyto 32.9 1.2E+02 0.0026 19.3 4.2 38 21-63 27-64 (86)
442 KOG2052|consensus 32.8 42 0.00091 27.7 2.6 28 4-31 130-157 (513)
443 TIGR00894 2A0114euk Na(+)-depe 32.8 81 0.0018 22.8 3.8 11 7-17 407-417 (465)
444 TIGR00145 FTR1 family protein. 32.7 80 0.0017 23.5 3.9 14 8-21 155-168 (283)
445 PF10883 DUF2681: Protein of u 32.7 77 0.0017 20.2 3.3 8 24-31 17-24 (87)
446 PF08496 Peptidase_S49_N: Pept 32.7 1.2E+02 0.0026 20.8 4.5 14 18-31 17-30 (155)
447 PF11752 DUF3309: Protein of u 32.7 35 0.00076 20.0 1.6 19 13-31 30-48 (49)
448 cd03388 PAP2_SPPase1 PAP2_like 32.6 45 0.00099 21.5 2.3 12 10-21 136-147 (151)
449 PF10326 7TM_GPCR_Str: Serpent 32.6 64 0.0014 22.5 3.2 29 12-41 7-35 (307)
450 PF04515 Choline_transpo: Plas 32.6 50 0.0011 23.4 2.7 20 12-31 2-21 (334)
451 cd03385 PAP2_BcrC_like PAP2_li 32.3 51 0.0011 21.0 2.5 13 10-22 128-140 (144)
452 PRK00052 prolipoprotein diacyl 32.3 75 0.0016 22.9 3.6 24 13-36 240-263 (269)
453 COG4147 DhlC Predicted symport 32.3 53 0.0011 27.3 3.1 20 8-27 446-465 (529)
454 KOG3884|consensus 32.2 1.3E+02 0.0027 24.5 5.1 49 10-58 298-348 (437)
455 PRK14793 lipoprotein signal pe 32.1 61 0.0013 21.8 2.9 13 18-30 128-140 (150)
456 PF15202 Adipogenin: Adipogeni 32.1 1.1E+02 0.0024 19.5 3.9 16 16-31 21-36 (81)
457 PRK14792 lipoprotein signal pe 32.1 46 0.00099 22.7 2.3 13 19-31 139-151 (159)
458 PF04191 PEMT: Phospholipid me 32.0 76 0.0017 18.7 3.1 19 20-38 78-96 (106)
459 PF01925 TauE: Sulfite exporte 31.9 1.3E+02 0.0027 20.0 4.4 10 22-31 98-107 (240)
460 PRK09765 PTS system 2-O-a-mann 31.8 63 0.0014 26.3 3.4 32 4-35 366-401 (631)
461 PF13441 Gly-zipper_YMGG: YMGG 31.8 45 0.00098 19.0 1.9 19 3-21 4-22 (45)
462 PLN03074 auxin influx permease 31.5 76 0.0016 24.7 3.7 20 2-21 72-91 (473)
463 KOG3762|consensus 31.5 1.1E+02 0.0023 26.0 4.7 25 7-31 511-547 (618)
464 TIGR03226 PhnU 2-aminoethylpho 31.4 1.3E+02 0.0029 21.6 4.7 7 32-38 305-311 (312)
465 COG3765 WzzB Chain length dete 31.3 95 0.0021 24.4 4.2 18 10-27 320-337 (347)
466 PF06596 PsbX: Photosystem II 31.2 1E+02 0.0022 17.3 3.7 9 6-14 8-16 (39)
467 PF10507 DUF2453: Protein of u 31.1 67 0.0015 21.4 2.9 22 7-28 88-109 (111)
468 PF11353 DUF3153: Protein of u 31.1 76 0.0016 21.9 3.3 6 25-30 198-203 (209)
469 PF12606 RELT: Tumour necrosis 31.0 92 0.002 18.0 3.2 22 14-35 5-27 (50)
470 KOG4026|consensus 31.0 51 0.0011 24.3 2.5 34 10-43 165-198 (207)
471 PF13172 PepSY_TM_1: PepSY-ass 31.0 72 0.0016 16.2 2.5 12 16-27 12-23 (34)
472 COG3559 TnrB3 Putative exporte 31.0 77 0.0017 26.4 3.8 31 8-39 82-112 (536)
473 cd00922 Cyt_c_Oxidase_IV Cytoc 30.9 75 0.0016 21.3 3.2 9 10-18 77-85 (136)
474 PRK01658 holin-like protein; V 30.9 1.4E+02 0.0031 19.6 4.4 32 6-37 91-122 (122)
475 TIGR02833 spore_III_AB stage I 30.9 35 0.00077 23.2 1.6 14 16-29 157-170 (170)
476 COG4267 Predicted membrane pro 30.7 78 0.0017 25.9 3.8 33 9-41 188-221 (467)
477 PF06143 Baculo_11_kDa: Baculo 30.6 1.2E+02 0.0026 19.4 3.9 27 10-36 38-64 (84)
478 PHA02680 ORF090 IMV phosphoryl 30.6 77 0.0017 20.8 3.1 27 11-37 50-76 (91)
479 KOG1024|consensus 30.5 42 0.00092 27.9 2.3 29 10-38 189-218 (563)
480 PF07271 Cytadhesin_P30: Cytad 30.5 26 0.00057 26.8 1.0 27 13-39 74-101 (279)
481 cd01610 PAP2_like PAP2_like pr 30.5 63 0.0014 18.4 2.5 15 10-24 107-121 (122)
482 PF07694 5TM-5TMR_LYT: 5TMR of 30.4 80 0.0017 20.1 3.2 27 4-30 50-76 (169)
483 PF10260 SAYSvFN: Uncharacteri 30.4 1.2E+02 0.0026 18.7 3.8 34 6-39 8-43 (71)
484 PRK11837 undecaprenyl pyrophos 30.4 86 0.0019 21.8 3.5 21 10-30 154-174 (202)
485 PF04632 FUSC: Fusaric acid re 30.4 59 0.0013 25.1 2.9 18 11-28 53-70 (650)
486 PF09548 Spore_III_AB: Stage I 30.3 38 0.00083 22.7 1.7 14 16-29 157-170 (170)
487 PF00950 ABC-3: ABC 3 transpor 30.3 87 0.0019 22.5 3.6 24 9-32 8-31 (257)
488 PRK14797 lipoprotein signal pe 30.2 62 0.0013 21.7 2.7 22 16-37 129-150 (150)
489 KOG4550|consensus 30.1 54 0.0012 27.4 2.8 37 4-41 557-593 (606)
490 PF01494 FAD_binding_3: FAD bi 29.9 15 0.00033 24.7 -0.3 15 10-24 6-20 (356)
491 TIGR01667 YCCS_YHJK integral m 29.9 51 0.0011 27.3 2.7 18 11-28 434-451 (701)
492 PHA03295 envelope glycoprotein 29.9 70 0.0015 27.2 3.5 23 12-34 690-712 (714)
493 PF09402 MSC: Man1-Src1p-C-ter 29.8 9.2 0.0002 27.6 -1.4 32 13-44 220-251 (334)
494 PRK10457 hypothetical protein; 29.8 1.4E+02 0.0031 18.5 4.5 29 5-33 36-81 (82)
495 cd03389 PAP2_lipid_A_1_phospha 29.7 58 0.0013 21.9 2.5 15 10-24 168-182 (186)
496 COG1593 DctQ TRAP-type C4-dica 29.7 1.8E+02 0.004 22.9 5.5 43 2-48 117-159 (379)
497 PF14960 ATP_synth_reg: ATP sy 29.6 61 0.0013 18.9 2.3 22 14-35 28-49 (49)
498 TIGR03770 anch_rpt_perm anchor 29.4 1E+02 0.0022 22.3 3.8 24 9-32 20-43 (270)
499 COG0586 DedA Uncharacterized m 29.4 1.1E+02 0.0025 21.1 4.0 30 10-39 178-207 (208)
500 TIGR01386 cztS_silS_copS heavy 29.4 1.4E+02 0.0031 21.0 4.5 29 6-34 162-190 (457)
No 1
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=99.97 E-value=4.6e-32 Score=165.89 Aligned_cols=60 Identities=53% Similarity=0.896 Sum_probs=7.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCccccCCcccc
Q psy1892 1 MTIPLATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREF 62 (64)
Q Consensus 1 ~~~~~~~ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE~K~~~~~~~y~k~~~~ef 62 (64)
|.||++++|+|||+|+|++|+++||+|++|||||||||||++||+|+++ ++|||+||+||
T Consensus 5 ~~~~~vlaavIaG~Vvgll~ailLIlf~iyR~rkkdEGSY~l~e~K~s~--~~Y~k~~~~ef 64 (64)
T PF01034_consen 5 FERSEVLAAVIAGGVVGLLFAILLILFLIYRMRKKDEGSYDLDEPKPSN--YAYQKAPTKEF 64 (64)
T ss_dssp --------------------------------S------SS--S-------------SSS-E
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCccc--cccccCCcCCC
Confidence 6899999999999999999999999999999999999999999999885 56999999998
No 2
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=98.46 E-value=2.1e-07 Score=62.24 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
++++|+|.|+++|++..||||.|+++|+|||.
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 46788888888888888999999999888874
No 3
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=97.92 E-value=8.2e-06 Score=54.59 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCc
Q psy1892 4 PLATSTVIGGAVVGLLCA-ILVVMFIVYRMRKKDEGS 39 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~a-ilLIlfli~r~rKKdegs 39 (64)
-++..++|+|+++|+++| |++|+|+.|+.|++.+.+
T Consensus 59 h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 59 HRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp SSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred cCccccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 367789999999999999 566677788899988874
No 4
>smart00294 4.1m putative band 4.1 homologues' binding motif.
Probab=97.89 E-value=1.5e-06 Score=45.65 Aligned_cols=20 Identities=50% Similarity=0.951 Sum_probs=17.5
Q ss_pred HHHHHhcCCCcccccCCCCC
Q psy1892 29 VYRMRKKDEGSYALEEPKRS 48 (64)
Q Consensus 29 i~r~rKKdegsY~leE~K~~ 48 (64)
++|+++||||||.++|+|..
T Consensus 1 myry~~R~kGSY~t~E~kg~ 20 (26)
T smart00294 1 MYRYKHRDEGSYHTHEPKGX 20 (26)
T ss_pred CcEEEecccCceEcCCCCCc
Confidence 46899999999999999854
No 5
>KOG3514|consensus
Probab=97.68 E-value=2.3e-05 Score=68.22 Aligned_cols=43 Identities=30% Similarity=0.663 Sum_probs=38.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCC
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPK 46 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE~K 46 (64)
+.-..|+++|+|+.+.++||++++.+|.+|+||||||..+|+.
T Consensus 1511 sssttGmVvGIvaAaaLcILilL~am~kyRnrdEGSYhvd~sr 1553 (1591)
T KOG3514|consen 1511 SSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYHVDESR 1553 (1591)
T ss_pred CCCccchhhHHHHHHHHHHHHHHhhcccccccccCccccccch
Confidence 3446788889999888999999999999999999999999965
No 6
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=96.77 E-value=6.7e-05 Score=47.80 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAI-LVVMFIVYR 31 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ai-lLIlfli~r 31 (64)
.++..|+|+|++||++..+ .|+.|++|.
T Consensus 61 ~~ls~gaiagi~vg~~~~v~~lv~~l~w~ 89 (96)
T PTZ00382 61 SGLSTGAIAGISVAVVAVVGGLVGFLCWW 89 (96)
T ss_pred CCcccccEEEEEeehhhHHHHHHHHHhhe
Confidence 4677899999999877554 333344443
No 7
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=96.66 E-value=0.0043 Score=34.94 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
|+-..|+|+|+++|++.-++.++...-++||
T Consensus 2 p~s~IaIIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 2 PSSTIAIIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5667899999999998887777776655554
No 8
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=96.11 E-value=0.0012 Score=50.13 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=21.8
Q ss_pred cchhHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy1892 3 IPLATSTVIGGAVVGLLCAIL-VVMFIVYR 31 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ail-LIlfli~r 31 (64)
+.+++.|+||||.|++|+.|- ||-||.|+
T Consensus 361 ~s~LstgaIaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 361 KSGLSTGAIAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred cccccccceeeeeehhHHHHHHHHHHHhhh
Confidence 458899999999998776643 56666665
No 9
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=95.97 E-value=0.011 Score=44.28 Aligned_cols=27 Identities=26% Similarity=0.652 Sum_probs=16.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhcC
Q psy1892 10 VIGGAVVGLLC-AILVVMFIVYRMRKKD 36 (64)
Q Consensus 10 ~IaG~VvGlv~-ailLIlfli~r~rKKd 36 (64)
+|+.+|+-|+. .|.+|+++|||+|||.
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444433333 3778888999966643
No 10
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=95.85 E-value=0.0022 Score=49.78 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCccccCCccccc
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFY 63 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE~K~~~~~~~y~k~~~~efy 63 (64)
++.++++|++++++++++++++++.|+||| ..|+ +...+.++.|..-|++|+|
T Consensus 353 ~~l~vVlgvavlivVv~viv~vc~~~rrrR--~~~~---~~~~~~~~~YtsLPtNE~~ 405 (439)
T PF02480_consen 353 ALLGVVLGVAVLIVVVGVIVWVCLRCRRRR--RQRD---KILNPFSPVYTSLPTNEPY 405 (439)
T ss_dssp ----------------------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHhheeeeehhcc--cccc---cccCcCCCccccCCCCCcc
Confidence 445555555555555555555555443332 2333 3333344568777777753
No 11
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=95.57 E-value=0.0077 Score=43.65 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
..+..+|.|++++.|+.|.||.++|+|+|.+.
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEeccccc
Confidence 45667777777777777777788888655544
No 12
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=95.26 E-value=0.0058 Score=34.56 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy1892 16 VGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 16 vGlv~ailLIlfli~r~rKK 35 (64)
||++.++|+++|++||+|+|
T Consensus 21 V~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred hHHHHHHHHHHhheEEeccC
Confidence 45566666666665544443
No 13
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=95.18 E-value=0.0086 Score=44.07 Aligned_cols=12 Identities=8% Similarity=0.263 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVV 16 (64)
Q Consensus 5 ~~~ag~IaG~Vv 16 (64)
.++.|+|||+++
T Consensus 38 ~I~iaiVAG~~t 49 (221)
T PF08374_consen 38 KIMIAIVAGIMT 49 (221)
T ss_pred eeeeeeecchhh
Confidence 355666666544
No 14
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=94.82 E-value=0.0077 Score=42.49 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILV----VMFIVYRM 32 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailL----Ilfli~r~ 32 (64)
.|+..+.++|++||+|+||-+ |+++++||
T Consensus 124 ~GL~T~tLVGIIVGVLlaIG~igGIIivvvRKm 156 (162)
T PF05808_consen 124 DGLSTVTLVGIIVGVLLAIGFIGGIIIVVVRKM 156 (162)
T ss_dssp ---------------------------------
T ss_pred CCcceeeeeeehhhHHHHHHHHhheeeEEeehh
Confidence 466667777777777777544 44555444
No 15
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=94.25 E-value=0.013 Score=41.43 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILV 24 (64)
Q Consensus 9 g~IaG~VvGlv~ailL 24 (64)
|+-.+.+||+++++|+
T Consensus 125 GL~T~tLVGIIVGVLl 140 (162)
T PF05808_consen 125 GLSTVTLVGIIVGVLL 140 (162)
T ss_dssp ----------------
T ss_pred CcceeeeeeehhhHHH
Confidence 3344445555555444
No 16
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=94.21 E-value=0.021 Score=34.92 Aligned_cols=6 Identities=17% Similarity=0.861 Sum_probs=2.5
Q ss_pred HHHHHH
Q psy1892 26 MFIVYR 31 (64)
Q Consensus 26 lfli~r 31 (64)
+++++|
T Consensus 20 ~~~~~r 25 (75)
T PF14575_consen 20 VIVCFR 25 (75)
T ss_dssp HHCCCT
T ss_pred EEEEEe
Confidence 334444
No 17
>PTZ00046 rifin; Provisional
Probab=93.78 E-value=0.12 Score=40.22 Aligned_cols=30 Identities=23% Similarity=0.593 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC
Q psy1892 7 TSTVIGGAVVGLLCA-ILVVMFIVYRMRKKD 36 (64)
Q Consensus 7 ~ag~IaG~VvGlv~a-ilLIlfli~r~rKKd 36 (64)
..++||.+|+-|+.. |.+|+++|.|+|||.
T Consensus 314 ~taIiaSiiAIvVIVLIMvIIYLILRYRRKK 344 (358)
T PTZ00046 314 QTAIIASIVAIVVIVLIMVIIYLILRYRRKK 344 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 345566655544443 567778888865553
No 18
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=93.66 E-value=0.13 Score=40.02 Aligned_cols=29 Identities=24% Similarity=0.641 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhcC
Q psy1892 8 STVIGGAVVGLLCA-ILVVMFIVYRMRKKD 36 (64)
Q Consensus 8 ag~IaG~VvGlv~a-ilLIlfli~r~rKKd 36 (64)
.++||.+|+-|+.. |.+|+++|.|+|||.
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYLILRYRRKK 339 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYLILRYRRKK 339 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45555555544443 667788888866553
No 19
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=93.55 E-value=0.039 Score=38.90 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=14.0
Q ss_pred chhHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCA 21 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~a 21 (64)
..+.+++|+|+|+|+||-
T Consensus 56 ~~lsgtAIaGIVfgiVfi 73 (155)
T PF10873_consen 56 DVLSGTAIAGIVFGIVFI 73 (155)
T ss_pred cccccceeeeeehhhHHH
Confidence 345678889999888876
No 20
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=93.48 E-value=0.0026 Score=44.53 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIV 29 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli 29 (64)
++.|++.|+-+.+++++++|+|++
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~ 73 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIF 73 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeE
Confidence 334444444444454444444433
No 21
>PF15179 Myc_target_1: Myc target protein 1
Probab=92.98 E-value=0.49 Score=34.54 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=28.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
..++.+.-..++||+|+|+++-+++.|..|+|-
T Consensus 19 ~~lIlaF~vSm~iGLviG~li~~LltwlSRRRA 51 (197)
T PF15179_consen 19 EDLILAFCVSMAIGLVIGALIWALLTWLSRRRA 51 (197)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 356777888999999999999999999987774
No 22
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=92.94 E-value=0.085 Score=31.30 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAI 22 (64)
Q Consensus 8 ag~IaG~VvGlv~ai 22 (64)
.|+++|+++|.+.++
T Consensus 3 ~g~l~Ga~~Ga~~gl 17 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGL 17 (74)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 23
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=92.26 E-value=0.3 Score=29.85 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
|+.+.-+.|.++|+++|++|+...++
T Consensus 36 Gv~~~~~~GfaiG~~~AlvLv~ip~~ 61 (64)
T PF09472_consen 36 GVMATGIKGFAIGFLFALVLVGIPIL 61 (64)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 56667778888888888766665444
No 24
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=92.16 E-value=0.22 Score=38.05 Aligned_cols=21 Identities=10% Similarity=0.540 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy1892 15 VVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 15 VvGlv~ailLIlfli~r~rKK 35 (64)
+|-++++|+||++.||.+|+|
T Consensus 266 lvllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 266 LVLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 444556677777777765443
No 25
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=91.95 E-value=0.2 Score=29.69 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCA 21 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~a 21 (64)
|++.|+++|+++|++++
T Consensus 4 g~l~Ga~~Ga~~glL~a 20 (74)
T PF12732_consen 4 GFLAGAAAGAAAGLLFA 20 (74)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 56777777777777776
No 26
>PTZ00370 STEVOR; Provisional
Probab=91.88 E-value=0.25 Score=37.78 Aligned_cols=28 Identities=21% Similarity=0.551 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccc
Q psy1892 15 VVGLLCAILVVMFIVYRMRKKDEGSYALE 43 (64)
Q Consensus 15 VvGlv~ailLIlfli~r~rKKdegsY~le 43 (64)
+|-++++|+||++.||.+|+| +.|+.=|
T Consensus 262 lvllil~vvliilYiwlyrrR-K~swkhe 289 (296)
T PTZ00370 262 LVLLILAVVLIILYIWLYRRR-KNSWKHE 289 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-cchhHHH
Confidence 444556677777777765543 3344433
No 27
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=91.75 E-value=0.034 Score=36.58 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlf 27 (64)
+|+|.|||+++|.++.-+
T Consensus 2 ~~i~lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRL 19 (128)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 355666666655554333
No 28
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=90.91 E-value=0.49 Score=27.36 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r 31 (64)
+-+.|+++|+++|++++.+=.|+
T Consensus 9 ~~iiG~~~G~ila~l~l~~GF~~ 31 (51)
T PF10031_consen 9 GKIIGGLIGLILALLILTFGFWK 31 (51)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665555553
No 29
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=90.72 E-value=0.52 Score=30.02 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r 31 (64)
+..|+.||+|+|=+.--|||...+|.
T Consensus 31 ls~g~LaGiV~~D~vlTLLIv~~vy~ 56 (79)
T PF07213_consen 31 LSPGLLAGIVAADAVLTLLIVLVVYY 56 (79)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777655555555555554
No 30
>KOG3817|consensus
Probab=90.51 E-value=0.2 Score=40.07 Aligned_cols=25 Identities=48% Similarity=0.887 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhcC
Q psy1892 12 GGAVVGLLCAILVVMFIVYR-MRKKD 36 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r-~rKKd 36 (64)
.|+|+|++..+|+++|+++| +-||.
T Consensus 166 sG~v~GilaSLl~Viflv~rf~PKkt 191 (452)
T KOG3817|consen 166 SGIVIGILASLLVVIFLVARFFPKKT 191 (452)
T ss_pred cccHHHHHHHHHHHHHHHHHhccccc
Confidence 48999999999999999999 55554
No 31
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=90.39 E-value=0.51 Score=25.29 Aligned_cols=20 Identities=30% Similarity=0.748 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1892 12 GGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r 31 (64)
+++++|++++++|+.+++|-
T Consensus 3 ~~vi~G~ilv~lLlgYLvyA 22 (29)
T PRK14748 3 AGVITGVLLVFLLLGYLVYA 22 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888775
No 32
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=90.02 E-value=0.012 Score=41.16 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhcCCC
Q psy1892 9 TVIGGAVVGLLCAIL-VVMFIVYRMRKKDEG 38 (64)
Q Consensus 9 g~IaG~VvGlv~ail-LIlfli~r~rKKdeg 38 (64)
.+|.|+|||+-.++| +|+.++|.++.|.+.
T Consensus 49 nIVIGvVVGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhheeEEEeccc
Confidence 368899999877755 557788889655443
No 33
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=89.60 E-value=0.11 Score=34.93 Aligned_cols=21 Identities=14% Similarity=0.531 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVM 26 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIl 26 (64)
+.+++|.|+++|+++.|++|.
T Consensus 76 ~~~~iivgvi~~Vi~Iv~~Iv 96 (179)
T PF13908_consen 76 FITGIIVGVICGVIAIVVLIV 96 (179)
T ss_pred ceeeeeeehhhHHHHHHHhHh
Confidence 455666666666665544333
No 34
>PRK09459 pspG phage shock protein G; Reviewed
Probab=89.35 E-value=1.8 Score=27.50 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhcC
Q psy1892 5 LATSTVIGGAVVGLLCA-----------ILVVMFIVYRMRKKD 36 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~a-----------ilLIlfli~r~rKKd 36 (64)
|+++++..+.++.++.| ++++...+|.+|+..
T Consensus 23 gv~aAl~va~~vM~l~Gm~~lviKLLPWLil~~v~vW~~r~~~ 65 (76)
T PRK09459 23 GIIAALGVATLVMFLGGMFALMIKLLPWLLLAVVVVWVIRAIK 65 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556655555555555 566666778777643
No 35
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=89.03 E-value=0.49 Score=33.74 Aligned_cols=24 Identities=38% Similarity=0.816 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
-.|+||| |+++++-|+|++||+-|
T Consensus 162 SFiGGIV--L~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 162 SFIGGIV--LTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhhhHHH--HHHHHHHHHHHHhhhcc
Confidence 3566666 57789999999998654
No 36
>PF15069 FAM163: FAM163 family
Probab=88.39 E-value=0.47 Score=32.99 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r 31 (64)
+|+|++...|.-+++|..|.|.
T Consensus 7 VItGgILAtVILLcIIaVLCYC 28 (143)
T PF15069_consen 7 VITGGILATVILLCIIAVLCYC 28 (143)
T ss_pred EEechHHHHHHHHHHHHHHHHH
Confidence 3555555555555556556655
No 37
>PF05356 Phage_Coat_B: Phage Coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1QL1_A 2XKM_A 4IFM_A 1QL2_A 1IFM_A 2KLV_A 1IFN_A 2IFN_A 3IFM_A 2KSJ_A ....
Probab=88.21 E-value=1.1 Score=28.90 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
-|+|.+||++|.+++.-+++..-||
T Consensus 58 svgg~IVgvl~~laVaGlI~~l~RK 82 (83)
T PF05356_consen 58 SVGGYIVGVLVILAVAGLIYSLLRK 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999887777666554554
No 38
>PRK06287 cobalt transport protein CbiN; Validated
Probab=88.21 E-value=1.4 Score=28.64 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
++.+++| |+|++..+++...+-+..|||+
T Consensus 77 ~g~ilsg-iiGv~i~l~l~~~~~~~l~r~~ 105 (107)
T PRK06287 77 IGEIIAM-VIGTLLVLALAYGVGKIFKKKS 105 (107)
T ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHhccc
Confidence 3444444 6666444444333333344443
No 39
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=88.12 E-value=0.11 Score=35.62 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHH-HHhcCCCcccccCCC
Q psy1892 9 TVIGGAVVGLLC-AILVVMFIVYR-MRKKDEGSYALEEPK 46 (64)
Q Consensus 9 g~IaG~VvGlv~-ailLIlfli~r-~rKKdegsY~leE~K 46 (64)
..|.|.|.++++ ..+|..|++|| -|+|++=.+-+|||-
T Consensus 79 ~pi~~sal~v~lVl~llsg~lv~rrcrrr~~~ttPIeeTg 118 (129)
T PF12191_consen 79 WPILGSALSVVLVLALLSGFLVWRRCRRREKFTTPIEETG 118 (129)
T ss_dssp ----------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhccccCCCcccccC
Confidence 334444444332 34555777777 444444566777763
No 40
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=88.11 E-value=0.51 Score=30.98 Aligned_cols=10 Identities=20% Similarity=0.926 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q psy1892 15 VVGLLCAILV 24 (64)
Q Consensus 15 VvGlv~ailL 24 (64)
+||+++|++|
T Consensus 3 ~i~lvvG~ii 12 (128)
T PF06295_consen 3 IIGLVVGLII 12 (128)
T ss_pred HHHHHHHHHH
Confidence 4555555533
No 41
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=87.95 E-value=0.88 Score=25.25 Aligned_cols=29 Identities=7% Similarity=0.355 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q psy1892 13 GAVVGLLCAILVVMFIVYRMRKKDEGSYA 41 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r~rKKdegsY~ 41 (64)
..+..+++.++++..++|-+++|.+..||
T Consensus 11 ~~~~~v~~~~~F~gi~~w~~~~~~k~~~e 39 (49)
T PF05545_consen 11 RSIGTVLFFVFFIGIVIWAYRPRNKKRFE 39 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhHH
Confidence 33444555555555566666666666443
No 42
>COG4218 MtrF Tetrahydromethanopterin S-methyltransferase, subunit F [Coenzyme metabolism]
Probab=87.82 E-value=0.88 Score=28.78 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCAILVVM 26 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIl 26 (64)
|+.+.-|+|..+|+++|++|+.
T Consensus 45 Gl~st~i~GlaiGfvfA~vLv~ 66 (73)
T COG4218 45 GLNSTRIAGLAIGFVFAGVLVG 66 (73)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH
Confidence 6677788999999999966554
No 43
>PF12669 P12: Virus attachment protein p12 family
Probab=87.69 E-value=0.63 Score=27.34 Aligned_cols=6 Identities=33% Similarity=0.817 Sum_probs=2.4
Q ss_pred HhcCCC
Q psy1892 33 RKKDEG 38 (64)
Q Consensus 33 rKKdeg 38 (64)
|++.+|
T Consensus 22 k~~K~G 27 (58)
T PF12669_consen 22 KDKKKG 27 (58)
T ss_pred HHhhcC
Confidence 333334
No 44
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=87.52 E-value=0.47 Score=39.82 Aligned_cols=35 Identities=17% Similarity=0.570 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccC
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEE 44 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE 44 (64)
+|+|+++-+++.+++|+++.|+..+|++..+.-|-
T Consensus 271 II~gVlvPv~vV~~Iiiil~~~LCRk~K~eFqpDa 305 (684)
T PF12877_consen 271 IIAGVLVPVLVVLLIIIILYWKLCRKNKLEFQPDA 305 (684)
T ss_pred EEehHhHHHHHHHHHHHHHHHHHhcccccCCCchh
Confidence 46777788877788888888887777777665553
No 45
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=87.30 E-value=0.18 Score=31.04 Aligned_cols=27 Identities=15% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYR-MRK 34 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r-~rK 34 (64)
.+++||+|+|.+.++++.++++-. +-+
T Consensus 8 ~~vlaavIaG~Vvgll~ailLIlf~iyR 35 (64)
T PF01034_consen 8 SEVLAAVIAGGVVGLLFAILLILFLIYR 35 (64)
T ss_dssp ----------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888875555555544 444
No 46
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=87.28 E-value=1.5 Score=24.80 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r 31 (64)
+++..++|++++.++.+.-.+|
T Consensus 24 il~~f~~G~llg~l~~~~~~~~ 45 (68)
T PF06305_consen 24 ILIAFLLGALLGWLLSLPSRLR 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777666666665
No 47
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=86.89 E-value=0.36 Score=36.14 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy1892 14 AVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 14 ~VvGlv~ailLIlfli~r~rK 34 (64)
+|||+++-+.|++.-+|++||
T Consensus 7 IIvGaiaI~aLl~hGlwt~Rk 27 (284)
T TIGR02205 7 IIVGILAIAALLFHGLWTSRK 27 (284)
T ss_pred HHHHHHHHHHHHHcccccccc
Confidence 678888888888889998766
No 48
>KOG0196|consensus
Probab=86.54 E-value=0.83 Score=39.71 Aligned_cols=56 Identities=27% Similarity=0.318 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCcccccCCC-----CCCCCCccccCCccc
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYRMR----KKDEGSYALEEPK-----RSPASNSYMKNSNRE 61 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r~r----KKdegsY~leE~K-----~~~~~~~y~k~~~~e 61 (64)
+++|.|.++|+.+|+++++.++++.+++ .|.+..|+.++.. +.|....|-.+.|-|
T Consensus 549 ~i~g~~~~~v~~lll~~vv~~~~~~~r~~~~~~~~~~~~t~~~~~~~~~~~~pG~k~YiDP~TYE 613 (996)
T KOG0196|consen 549 LIIGSILAGVVFLLLAAVVVVAIVCSRKRCGYSRAEQEYTEKLQHYSNGEQLPGTKTYIDPHTYE 613 (996)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeecccccchhcccCCChhHhhhhcCCCCCCceeecCCcccc
Confidence 6677777777777777666666665432 1344445554322 233344566665544
No 49
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=86.30 E-value=0.037 Score=35.22 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=16.4
Q ss_pred cchhHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy1892 3 IPLATSTVIGGAVVGLLCAI-LVVMFIVYR 31 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ai-lLIlfli~r 31 (64)
.+|.++|+..|+|+.+...+ +|+.|+++|
T Consensus 64 s~gaiagi~vg~~~~v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 64 STGAIAGISVAVVAVVGGLVGFLCWWFVCR 93 (96)
T ss_pred ccccEEEEEeehhhHHHHHHHHHhheeEEe
Confidence 46778887777765553332 333444443
No 50
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.05 E-value=1.1 Score=33.15 Aligned_cols=27 Identities=15% Similarity=0.392 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1892 12 GGAVVGLLCAILVVMFIVYRMRKKDEG 38 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r~rKKdeg 38 (64)
-++.+|+++-+.|+.+++.|.|||++|
T Consensus 234 lAiALG~v~ll~l~Gii~~~~~r~~~~ 260 (281)
T PF12768_consen 234 LAIALGTVFLLVLIGIILAYIRRRRQG 260 (281)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 356677778888888888887777666
No 51
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=85.83 E-value=1.2 Score=29.35 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=18.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 2 TIPLATSTVIGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 2 ~~~~~~ag~IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
.|+.-.-|+--++|+|+...++|+.|..++.|||
T Consensus 27 ~n~~~~Lgm~~lvI~~iFil~VilwfvCC~kRkr 60 (94)
T PF05393_consen 27 VNNWPNLGMWFLVICGIFILLVILWFVCCKKRKR 60 (94)
T ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555555555666545455555555544444
No 52
>PRK11677 hypothetical protein; Provisional
Probab=85.62 E-value=0.17 Score=34.34 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlf 27 (64)
+++|.|||+++|.++.-+
T Consensus 6 a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345666666666555444
No 53
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=85.57 E-value=1.1 Score=28.47 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=22.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 3 IPLATSTVIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
.+++++|+|+|=++--++-++ ..|..-|+|+|.
T Consensus 32 s~g~LaGiV~~D~vlTLLIv~-~vy~car~r~r~ 64 (79)
T PF07213_consen 32 SPGLLAGIVAADAVLTLLIVL-VVYYCARPRRRP 64 (79)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHhhcccccCC
Confidence 479999999998776665444 445555555543
No 54
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=85.57 E-value=0.62 Score=33.81 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCc
Q psy1892 9 TVIGGAVVGLLCA-ILVVMFIVYRMRKKDEGS 39 (64)
Q Consensus 9 g~IaG~VvGlv~a-ilLIlfli~r~rKKdegs 39 (64)
-.++-++||+.++ ++||.++.|.+.+|...+
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEeccccc
Confidence 3577888998877 667777888898876654
No 55
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=85.44 E-value=0.21 Score=33.61 Aligned_cols=23 Identities=22% Similarity=0.730 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~ 30 (64)
.+++++++||++++|++|+.+|-
T Consensus 74 ~~~~~~iivgvi~~Vi~Iv~~Iv 96 (179)
T PF13908_consen 74 IYFITGIIVGVICGVIAIVVLIV 96 (179)
T ss_pred ccceeeeeeehhhHHHHHHHhHh
Confidence 34567777777776666655553
No 56
>COG5547 Small integral membrane protein [Function unknown]
Probab=85.43 E-value=1.7 Score=26.77 Aligned_cols=20 Identities=50% Similarity=0.778 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~ 30 (64)
|.|..||++.|+|++-|-.|
T Consensus 11 IIgglvglliAili~t~Gfw 30 (62)
T COG5547 11 IIGGLVGLLIAILILTFGFW 30 (62)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45666777777555544433
No 57
>PF15102 TMEM154: TMEM154 protein family
Probab=85.22 E-value=0.28 Score=34.11 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1892 12 GGAVVGLLCAILVVMFIVYRMRKKDEG 38 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r~rKKdeg 38 (64)
...|+++++-+++|+++++.+|||.++
T Consensus 63 IP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 63 IPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHHHHHHheeEEeecccCC
Confidence 333444444444444444445555544
No 58
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=84.76 E-value=3.9 Score=26.66 Aligned_cols=12 Identities=17% Similarity=0.711 Sum_probs=6.8
Q ss_pred HHHHHHHHhcCC
Q psy1892 26 MFIVYRMRKKDE 37 (64)
Q Consensus 26 lfli~r~rKKde 37 (64)
-++.|||+||..
T Consensus 18 sl~~wr~~~rq~ 29 (107)
T PF15330_consen 18 SLLAWRMKQRQK 29 (107)
T ss_pred HHHHHHHHhhhc
Confidence 346677655543
No 59
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=84.73 E-value=0.77 Score=30.76 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCAIL 23 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ail 23 (64)
.++.|+..|++||.+.|+|
T Consensus 6 ~~l~G~liGgiiGa~aaLL 24 (115)
T COG4980 6 DFLFGILIGGIIGAAAALL 24 (115)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655544
No 60
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=84.15 E-value=2.4 Score=27.78 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCC
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKR 47 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE~K~ 47 (64)
=++.++|+|+....+++.++ +|. +|+-|+-|.+|-+.
T Consensus 76 lvLTaIVIg~Av~a~~lvl~-~r~-~~~~~t~~~~~l~~ 112 (117)
T PRK12659 76 LILTAIVIGFGVQAFAIVLI-KRA-YQVVGTDDLDEMKT 112 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH-HcccCcccHHHhcc
Confidence 35667777777666555544 433 33455556666443
No 61
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=84.08 E-value=0.32 Score=36.61 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcccccC
Q psy1892 9 TVIGGAVVGLLCA-ILVVMFIVYRMRKKDEGSYALEE 44 (64)
Q Consensus 9 g~IaG~VvGlv~a-ilLIlfli~r~rKKdegsY~leE 44 (64)
.+|..+||.+++- +.+|..+.| |||.+|+-.+||
T Consensus 148 T~IpaVVI~~iLLIA~iIa~icy--rrkR~GK~~~ee 182 (290)
T PF05454_consen 148 TFIPAVVIAAILLIAGIIACICY--RRKRKGKMSLEE 182 (290)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--hhhhccccccch
Confidence 3444444433332 344444555 445555555544
No 62
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=83.96 E-value=2.6 Score=26.02 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCAILVV 25 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLI 25 (64)
|+.+.-+.|..+|+++|++|+
T Consensus 36 Gv~~~~~~G~aiG~~~AlvLv 56 (67)
T PRK13275 36 GVIATGIIGFAIGFLLALLLV 56 (67)
T ss_pred HhhhhhHHHHHHHHHHHHHHH
Confidence 566666788888888886554
No 63
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=83.74 E-value=2 Score=26.70 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 13 GAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~ 30 (64)
|++.|++++++=.+--+|
T Consensus 37 Gvi~gi~~~~lt~ltN~Y 54 (68)
T PF04971_consen 37 GVIGGIFFGLLTYLTNLY 54 (68)
T ss_pred HHHHHHHHHHHHHHhHhh
Confidence 344444444443333333
No 64
>PRK11677 hypothetical protein; Provisional
Probab=83.73 E-value=1.1 Score=30.32 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1892 14 AVVGLLCAILVVMFIV 29 (64)
Q Consensus 14 ~VvGlv~ailLIlfli 29 (64)
+++|+++|+++=+|+.
T Consensus 6 a~i~livG~iiG~~~~ 21 (134)
T PRK11677 6 ALIGLVVGIIIGAVAM 21 (134)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555544443333
No 65
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=83.42 E-value=1.4 Score=30.93 Aligned_cols=29 Identities=31% Similarity=0.576 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHHHHHh
Q psy1892 6 ATSTVIGGAVVGLLCAIL--VVMFIVYRMRK 34 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ail--LIlfli~r~rK 34 (64)
..+|+|+|||-.|++|++ +--|+-|..||
T Consensus 112 ~~~g~IaGIvsav~valvGAvsSyiaYqkKK 142 (169)
T PF12301_consen 112 AEAGTIAGIVSAVVVALVGAVSSYIAYQKKK 142 (169)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555544444422 23456664333
No 66
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=82.95 E-value=1.1 Score=28.21 Aligned_cols=22 Identities=23% Similarity=0.702 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhcCCCcccccC
Q psy1892 22 ILVVMFIVYRMRKKDEGSYALEE 44 (64)
Q Consensus 22 ilLIlfli~r~rKKdegsY~leE 44 (64)
++||+...++|.|-|+. |+.||
T Consensus 60 viLi~~Ya~~mnrlD~~-~gv~E 81 (81)
T PF13937_consen 60 VILIFVYAWRMNRLDRK-YGVDE 81 (81)
T ss_pred HHHHHHHHHHHHHHHHH-HCCCC
Confidence 67777788888887775 77776
No 67
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=82.86 E-value=1.9 Score=28.90 Aligned_cols=17 Identities=35% Similarity=0.122 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCA 21 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~a 21 (64)
|++.|.|+|++++|++|
T Consensus 10 G~liGgiiGa~aaLL~A 26 (115)
T COG4980 10 GILIGGIIGAAAALLFA 26 (115)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 45556666666666665
No 68
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=82.63 E-value=1.4 Score=31.86 Aligned_cols=24 Identities=25% Similarity=0.708 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhc
Q psy1892 12 GGAVVGLLCAILVVMFIVYR-MRKK 35 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r-~rKK 35 (64)
+|+.+|+++.+++++|+..| +-||
T Consensus 40 sg~~lGv~~s~li~~~~~~k~lPrk 64 (249)
T PF10225_consen 40 SGISLGVLASLLILLFQLSKLLPRK 64 (249)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccCc
Confidence 58899999999999999888 4433
No 69
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=82.54 E-value=1.8 Score=21.72 Aligned_cols=6 Identities=33% Similarity=0.479 Sum_probs=2.8
Q ss_pred HHHHHH
Q psy1892 13 GAVVGL 18 (64)
Q Consensus 13 G~VvGl 18 (64)
.+++|+
T Consensus 13 ~~~~G~ 18 (34)
T TIGR01167 13 LLLLGL 18 (34)
T ss_pred HHHHHH
Confidence 344455
No 70
>PF11021 DUF2613: Protein of unknown function (DUF2613); InterPro: IPR022566 This is a family of putative small secreted proteins expressed by Actinobacteria. The function is not known.
Probab=82.32 E-value=2.1 Score=25.55 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
+..+...++.+|+|+++++..++.+-.
T Consensus 2 ~r~l~pa~aSaV~Gi~lG~~av~gvt~ 28 (56)
T PF11021_consen 2 PRFLGPAAASAVVGIVLGVAAVFGVTA 28 (56)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhe
Confidence 345677888888888888776665543
No 71
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=81.74 E-value=4.1 Score=26.51 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCC
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKR 47 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE~K~ 47 (64)
+=++.++|+|+....+++.+. +| ..|+-|+-|.+|-+.
T Consensus 72 alvLTaIVIg~av~a~lL~l~-~r-~~~~~~t~~~~~l~~ 109 (114)
T PRK12660 72 AIVLTAIVIGFGMTAFLLVLV-YR-TYKVTKEDEIEGLRG 109 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HH-HHhhcCcchHHHhcc
Confidence 345667777777666665555 43 333556666666554
No 72
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=81.46 E-value=6.9 Score=22.88 Aligned_cols=7 Identities=14% Similarity=0.662 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy1892 16 VGLLCAI 22 (64)
Q Consensus 16 vGlv~ai 22 (64)
.|+||.+
T Consensus 12 m~iVF~~ 18 (79)
T PF04277_consen 12 MGIVFLV 18 (79)
T ss_pred HHHHHHH
Confidence 3444443
No 73
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=80.99 E-value=3.2 Score=22.20 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 13 GAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r 31 (64)
|++.|.++-++|+.+++|-
T Consensus 4 ~vi~g~llv~lLl~YLvYA 22 (29)
T PRK14750 4 SIVCGALLVLLLLGYLVYA 22 (29)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666664
No 74
>KOG3637|consensus
Probab=80.92 E-value=2.1 Score=36.94 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r 31 (64)
|.+++.|+|+-+||+ +++|+
T Consensus 982 i~svl~GLLlL~llv-~~LwK 1001 (1030)
T KOG3637|consen 982 ILSVLGGLLLLALLV-LLLWK 1001 (1030)
T ss_pred hHHHHHHHHHHHHHH-HHHHh
Confidence 444555555554444 44555
No 75
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=80.92 E-value=4.2 Score=26.43 Aligned_cols=30 Identities=33% Similarity=0.604 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
+++++|.|++.|+++-.+ +.+++.++|||+
T Consensus 121 ~~G~~i~~~v~~~i~Y~l-~~~~~~~~r~~r 150 (154)
T PF09835_consen 121 LLGSLILGIVLGIISYFL-VYFLVRKYRKRR 150 (154)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 344444444444443322 333333344443
No 76
>COG3944 Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=80.82 E-value=2.1 Score=31.81 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=34.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCcccccCCCCCC
Q psy1892 3 IPLATSTVIGGAVVGLLCAILVVMFIVYR-MRKKDEGSYALEEPKRSP 49 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ailLIlfli~r-~rKKdegsY~leE~K~~~ 49 (64)
.|..+--++.|.++|++.++.+++|+-|. .|=|++. |+||.-+.|
T Consensus 169 sP~~~~Ni~iaf~~Gl~~~igiafl~e~lD~tIKs~e--die~~l~lP 214 (226)
T COG3944 169 SPKVMRNIVIAFLAGLAGAIGIAFLLEYLDKTIKSEE--DIEEVLDLP 214 (226)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHH--HHHHhhCCc
Confidence 36677788999999999999999999887 5555655 677655544
No 77
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=80.51 E-value=3.9 Score=24.30 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=15.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlf 27 (64)
|...-=+..|+++|+++++.++++
T Consensus 56 P~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 56 PKRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445667777777777766653
No 78
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=80.51 E-value=2.8 Score=33.74 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r~rKKde 37 (64)
+.+.+.|++++++++.++.+++-++++||+|
T Consensus 313 ~~~~~i~~~v~~~v~~v~t~~~~~~~~~~~~ 343 (639)
T PRK15083 313 YFANIASVAAAMAVSFVVSAILLKTSKVKEE 343 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 3456668888888888888888888888776
No 79
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.43 E-value=2.2 Score=28.95 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCA 21 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~a 21 (64)
+++=.|+|++||++++
T Consensus 48 lssefIsGilVGa~iG 63 (116)
T COG5336 48 LSSEFISGILVGAGIG 63 (116)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455677777777777
No 80
>PHA03265 envelope glycoprotein D; Provisional
Probab=80.26 E-value=0.57 Score=37.19 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEG 38 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r~rKKdeg 38 (64)
.+.+|+|.++|++..- .|||..||+||-.++
T Consensus 350 ~g~~ig~~i~glv~vg-~il~~~~rr~k~~~k 380 (402)
T PHA03265 350 VGISVGLGIAGLVLVG-VILYVCLRRKKELKK 380 (402)
T ss_pred cceEEccchhhhhhhh-HHHHHHhhhhhhhhh
Confidence 4455666777766543 455666666654433
No 81
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=80.00 E-value=4.1 Score=28.06 Aligned_cols=29 Identities=7% Similarity=0.358 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
-.+..++=+..++++.+.+|+|++|..||
T Consensus 19 ~~~~~~~~~~gsL~~iL~lil~~~wl~kr 47 (137)
T COG3190 19 SAALELAQMFGSLILILALILFLAWLVKR 47 (137)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777788888888887555
No 82
>TIGR02507 MtrF tetrahydromethanopterin S-methyltransferase, F subunit. coenzyme M methyltransferase in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=79.70 E-value=2.7 Score=25.90 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCAILVV 25 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLI 25 (64)
|+.+.-+-|..+|+++|++++
T Consensus 36 Gv~~~~~~G~~iG~~~Al~lV 56 (65)
T TIGR02507 36 GVQTTTITGLAYGFLFAVLLV 56 (65)
T ss_pred hhhhhhhHHHHHHHHHHHHHH
Confidence 455555667788888886554
No 83
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=78.81 E-value=5.6 Score=28.97 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
++.++++++++.++++.+++|++++|+
T Consensus 229 ~~~~i~~~~~~~~~~~~~~~~~~~~r~ 255 (511)
T PF09972_consen 229 IILPILIVLGILLLLIFLIIWRKYGRD 255 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 334444444444445555666544444
No 84
>PTZ00045 apical membrane antigen 1; Provisional
Probab=78.57 E-value=3.5 Score=34.32 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1892 11 IGGAVVGLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r~rKKde 37 (64)
|.-+++|+++++|++++..|++|||..
T Consensus 518 ~iia~~~~~~~vl~~~~~~~~~k~~~~ 544 (595)
T PTZ00045 518 IIIAATGAVVLVLLAYFSYRYYRKKGN 544 (595)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 333445556666667777776666643
No 85
>PF09583 Phageshock_PspG: Phage shock protein G (Phageshock_PspG); InterPro: IPR014318 This protein previously was designated yjbO in Escherichia coli. It is found only in genomes that have the phage shock operon (psp), but it is only rarely encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins and heat shock.
Probab=78.26 E-value=7.8 Score=23.98 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhc
Q psy1892 5 LATSTVIGGAVVGLLCA-----------ILVVMFIVYRMRKK 35 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~a-----------ilLIlfli~r~rKK 35 (64)
|++++...+.++.++.| ++++...+|-+|++
T Consensus 23 gv~aA~~va~~vm~l~Gm~~lviKLLPWLil~~~~vW~~r~~ 64 (65)
T PF09583_consen 23 GVLAALAVAFAVMFLGGMFGLVIKLLPWLILAAVVVWFYRAR 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44555555555555544 55666677777764
No 86
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=78.20 E-value=4.7 Score=26.71 Aligned_cols=9 Identities=56% Similarity=0.892 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy1892 11 IGGAVVGLL 19 (64)
Q Consensus 11 IaG~VvGlv 19 (64)
++|+++|+.
T Consensus 35 ~~g~~~gl~ 43 (121)
T PF11990_consen 35 VAGLVVGLP 43 (121)
T ss_pred HHHHHHHHH
Confidence 333333333
No 87
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=77.38 E-value=4.9 Score=27.30 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r 31 (64)
.+|.|++.|+|++++..++.+.|
T Consensus 119 ~~i~~~i~g~ll~i~~giy~~~r 141 (145)
T PF10661_consen 119 PTILLSIGGILLAICGGIYVVLR 141 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666665553
No 88
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=77.10 E-value=4.3 Score=26.06 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccc
Q psy1892 16 VGLLCAILVVMFIVYRMRKKDEGSYAL 42 (64)
Q Consensus 16 vGlv~ailLIlfli~r~rKKdegsY~l 42 (64)
+|+++.++...++.| |-|+|....+.
T Consensus 48 ~gl~lw~v~h~~l~~-mAK~DP~~~~V 73 (94)
T PRK13823 48 FGIALWFGALFALRL-MAKADPKMRHV 73 (94)
T ss_pred HHHHHHHHHHHHHHH-HHhcChHHHHH
Confidence 445444444444444 67777665554
No 89
>PF14851 FAM176: FAM176 family
Probab=76.79 E-value=4 Score=28.39 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~ 30 (64)
.+.|+.+|||+.++++..=+-
T Consensus 26 Fv~gVC~GLlLtLcllV~ris 46 (153)
T PF14851_consen 26 FVSGVCAGLLLTLCLLVIRIS 46 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhhe
Confidence 467888888888766655443
No 90
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=76.20 E-value=2.1 Score=30.96 Aligned_cols=44 Identities=30% Similarity=0.275 Sum_probs=18.7
Q ss_pred HHHH--HHHHHHHHH--HHHHHHHhcCCCcccccCCCCCCCCCccccCCc
Q psy1892 14 AVVG--LLCAILVVM--FIVYRMRKKDEGSYALEEPKRSPASNSYMKNSN 59 (64)
Q Consensus 14 ~VvG--lv~ailLIl--fli~r~rKKdegsY~leE~K~~~~~~~y~k~~~ 59 (64)
++.| ++++|+++. +++-|+..+.+|..--||. +. .-|.||-+|+
T Consensus 106 v~~g~~lLla~~~~~~Y~~~~Rrs~~~~~~rl~Ee~-~~-vEng~h~n~~ 153 (202)
T PF06365_consen 106 VTSGSFLLLAILLGAGYCCHQRRSWSKKGQRLGEEL-YT-VENGYHDNPT 153 (202)
T ss_pred HHhhHHHHHHHHHHHHHHhhhhccCCcchhhhccCc-ee-cccCccCCcc
Confidence 3445 444443333 4444433333444333333 22 2245666554
No 91
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=76.09 E-value=1.4 Score=32.66 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~ 30 (64)
-++.|+|.|++..||+|+..+.
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~ 59 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVL 59 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHH
Confidence 3677888888888777666443
No 92
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=76.01 E-value=3.8 Score=25.47 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
.|+|+|+++|++-.+.=+.|=+++-|+|
T Consensus 36 IGvi~gi~~~~lt~ltN~YFK~k~drr~ 63 (68)
T PF04971_consen 36 IGVIGGIFFGLLTYLTNLYFKIKEDRRK 63 (68)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhHhhhH
Confidence 4899999999999999999999884443
No 93
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=75.96 E-value=4.2 Score=30.65 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=27.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 3 IPLATSTVIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
+..+.+-+||=+|+-++.-|+.++|-.+|.||..
T Consensus 255 ~t~I~aSiiaIliIVLIMvIIYLILRYRRKKKmk 288 (299)
T PF02009_consen 255 TTAIIASIIAILIIVLIMVIIYLILRYRRKKKMK 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3557888999999999999999999999954443
No 94
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=75.84 E-value=4.6 Score=27.43 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
.+.++|+|+|+.+.++|-.++=-+|
T Consensus 120 ~i~~~i~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 120 TILLSIGGILLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778888888888888887776666
No 95
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=75.17 E-value=6.6 Score=28.88 Aligned_cols=31 Identities=10% Similarity=0.107 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy1892 3 IPLATSTVIGGAVVGLLCAILVVMFIV-YRMR 33 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ailLIlfli-~r~r 33 (64)
.+++.++-++-+++++++-+++|++++ |..|
T Consensus 60 ~~~~s~~~l~qmi~aL~~VI~Liy~l~rwL~r 91 (219)
T PRK13415 60 ASSVSAFDFVKLIGATLFVIFLIYALVKWLNK 91 (219)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888777777776 4333
No 96
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=75.07 E-value=1.7 Score=27.57 Aligned_cols=32 Identities=9% Similarity=0.307 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccccC
Q psy1892 13 GAVVGLLCAILVVMFIVYRMRKKDEGSYALEE 44 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r~rKKdegsY~leE 44 (64)
-++++++|.++|+..+.|-.--|+..++...+
T Consensus 66 i~lls~v~IlVily~IyYFVILRer~~~~~~~ 97 (101)
T PF06024_consen 66 ISLLSFVCILVILYAIYYFVILRERQKSIRNQ 97 (101)
T ss_pred HHHHHHHHHHHHHhhheEEEEEecccccccCC
Confidence 33444444444443333333333333444433
No 97
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=74.98 E-value=11 Score=23.32 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCA 21 (64)
Q Consensus 10 ~IaG~VvGlv~a 21 (64)
++++.++|++++
T Consensus 26 ~~~~~~~gi~~~ 37 (95)
T PF07178_consen 26 ALILFVIGILSG 37 (95)
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 98
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.91 E-value=0.95 Score=31.51 Aligned_cols=35 Identities=23% Similarity=0.477 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccC
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEE 44 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE 44 (64)
+++|.|||+++|.++.=|.=...|+...=.+++|.
T Consensus 11 a~igLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~ 45 (138)
T COG3105 11 ALIGLVVGIIIGALIARLTNRKLKQQQKLQYELEK 45 (138)
T ss_pred HHHHHHHHHHHHHHHHHHcchhhhhHHHHHHHHHH
Confidence 45566667666655444433333332233344443
No 99
>KOG3653|consensus
Probab=74.76 E-value=11 Score=31.21 Aligned_cols=30 Identities=33% Similarity=0.562 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRMRKKDEG 38 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~rKKdeg 38 (64)
+.|.-.+|+++.++++..|+.||+||-...
T Consensus 157 al~~~~~v~~l~~lvi~~~~~~r~~k~~~~ 186 (534)
T KOG3653|consen 157 ALIPLLLVSLLAALVILAFLGYRQRKNARE 186 (534)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 334445677888888899999998885543
No 100
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=74.55 E-value=5.3 Score=24.00 Aligned_cols=19 Identities=32% Similarity=0.637 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCAILVVMFIV 29 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli 29 (64)
|||+++++.|++|.+++++
T Consensus 1 Ia~lI~Aiaf~vLvi~l~~ 19 (90)
T PF06103_consen 1 IAGLIAAIAFAVLVIFLIK 19 (90)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3455555555544444433
No 101
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=74.48 E-value=3.5 Score=26.97 Aligned_cols=8 Identities=13% Similarity=0.505 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy1892 23 LVVMFIVY 30 (64)
Q Consensus 23 lLIlfli~ 30 (64)
++++++++
T Consensus 33 ~~~~~~~~ 40 (146)
T PF14316_consen 33 LLILLLWR 40 (146)
T ss_pred HHHHHHHH
Confidence 33333333
No 102
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=74.41 E-value=3 Score=25.95 Aligned_cols=22 Identities=23% Similarity=0.705 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhcCCCcccccC
Q psy1892 22 ILVVMFIVYRMRKKDEGSYALEE 44 (64)
Q Consensus 22 ilLIlfli~r~rKKdegsY~leE 44 (64)
++||+...++|.|-|+ +|..||
T Consensus 56 viLi~~Ya~~m~rlD~-~~g~~e 77 (77)
T TIGR03647 56 VVLIFVYAWRMNRLDR-KYGVDE 77 (77)
T ss_pred HHHHHHHHHHHHHHHH-HhCCCC
Confidence 6667777777888776 577765
No 103
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=74.22 E-value=9.3 Score=24.54 Aligned_cols=13 Identities=38% Similarity=0.447 Sum_probs=6.9
Q ss_pred HHHHHHHhcCCCc
Q psy1892 27 FIVYRMRKKDEGS 39 (64)
Q Consensus 27 fli~r~rKKdegs 39 (64)
+..+|+=|+.+|+
T Consensus 56 ~~~~r~lK~g~g~ 68 (101)
T PRK13707 56 WFGIRKLKKGRGS 68 (101)
T ss_pred HHHHHHHHcCCCh
Confidence 3444444566665
No 104
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=74.06 E-value=4.1 Score=34.93 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~r 31 (64)
+-++.++.+|+++.+++-+++++..++|
T Consensus 272 T~fLl~ILG~~~livl~lL~vLl~yCrr 299 (807)
T PF10577_consen 272 TVFLLAILGGTALIVLILLCVLLCYCRR 299 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4567888888888877665555444444
No 105
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.93 E-value=3.5 Score=28.73 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCA 21 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~a 21 (64)
.+.|.|+|++||.+++
T Consensus 11 a~igLvvGi~IG~li~ 26 (138)
T COG3105 11 ALIGLVVGIIIGALIA 26 (138)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566777777777666
No 106
>PRK08600 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=73.90 E-value=7.9 Score=25.51 Aligned_cols=40 Identities=13% Similarity=0.291 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCC
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEP 45 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE~ 45 (64)
|-.=|=++.++|+|+...++++.+.+..+++ .|+-|.||-
T Consensus 67 PlPQALvLTaIVIg~a~tAl~L~l~~r~~~~--~gt~d~~~~ 106 (113)
T PRK08600 67 PLPQALILTAIVISFGVTAFFLVLAYRTYKE--LGTDNVEQM 106 (113)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCccHHHh
Confidence 3334456788899988888777776653443 455566554
No 107
>PRK10132 hypothetical protein; Provisional
Probab=73.69 E-value=4.3 Score=26.46 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=11.7
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q psy1892 3 IPLATSTVIGGAVVGLLCAIL 23 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ail 23 (64)
+|--..|+.| .||+++|+|
T Consensus 85 ~Pw~svgiaa--gvG~llG~L 103 (108)
T PRK10132 85 RPWCSVGTAA--AVGIFIGAL 103 (108)
T ss_pred CcHHHHHHHH--HHHHHHHHH
Confidence 4555555544 378877766
No 108
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=73.69 E-value=8.4 Score=23.72 Aligned_cols=14 Identities=14% Similarity=-0.140 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCA 21 (64)
Q Consensus 8 ag~IaG~VvGlv~a 21 (64)
.|.+.|.+..++++
T Consensus 22 vG~~~g~~~~~l~~ 35 (90)
T PF11808_consen 22 VGWLFGHLWWALLL 35 (90)
T ss_pred HHHHHhHHHHHHHH
Confidence 33344444333333
No 109
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=73.32 E-value=5.4 Score=27.42 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhc
Q psy1892 10 VIGGAVVGLLCAI---LVVMFIVYRMRKK 35 (64)
Q Consensus 10 ~IaG~VvGlv~ai---lLIlfli~r~rKK 35 (64)
+++|.++|+++++ .+-..+|.++|||
T Consensus 110 ~~Gg~l~Gli~~~~~Y~ls~~lI~~Yr~~ 138 (154)
T TIGR03546 110 VMGSFVVGLILLPPAFAISKVIIAKYRKR 138 (154)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666664 2333445556665
No 110
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=72.65 E-value=15 Score=22.72 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHH-HHHHHh
Q psy1892 17 GLLCAILVVMFI-VYRMRK 34 (64)
Q Consensus 17 Glv~ailLIlfl-i~r~rK 34 (64)
|+||..|+++.+ ++.+.|
T Consensus 16 ~~VF~fL~lLi~~i~~~~~ 34 (82)
T TIGR01195 16 GIVFLFLSLLIYAVRGMGK 34 (82)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 444444433333 333444
No 111
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=72.63 E-value=6.7 Score=29.78 Aligned_cols=19 Identities=11% Similarity=0.253 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILV 24 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailL 24 (64)
+.++++.|.++++++.+++
T Consensus 139 ~~~~~ip~~i~~i~~~~~~ 157 (388)
T TIGR00771 139 NFHYMLPGAIGAIILTAIA 157 (388)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 4455666666666655544
No 112
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=72.14 E-value=7.2 Score=27.83 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
.+.+.|.+.|+++-+-+++++++|...+.
T Consensus 88 ~a~~~G~~aGi~~liGl~~Ll~RRl~~~~ 116 (224)
T TIGR00351 88 MAMFAGGASGVLCLIGGVLLLKRRLFSPR 116 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 35677888888888888888888755443
No 113
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=72.02 E-value=4 Score=30.62 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfl 28 (64)
-|+.+|-|-|+++|++++++|+.++
T Consensus 213 ~G~~~gki~G~~~gl~~~~~l~~~~ 237 (238)
T TIGR01111 213 AGYYSGKIQGIMIGLTSTLSLLGLL 237 (238)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 4677888899999988887776654
No 114
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.83 E-value=9 Score=24.07 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHh
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR-MRK 34 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r-~rK 34 (64)
.|-++|+++++++++=+|+..| ++|
T Consensus 6 ail~ivl~ll~G~~~G~fiark~~~k 31 (71)
T COG3763 6 AILLIVLALLAGLIGGFFIARKQMKK 31 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888888887 444
No 115
>TIGR02975 phageshock_pspG phage shock protein G. This protein previously was designated yjbO in E. coli. It is found only in genomes that have the phage shock operon (psp), but only rarely is encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins, and heat shock.
Probab=71.34 E-value=14 Score=22.74 Aligned_cols=31 Identities=6% Similarity=0.116 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhc
Q psy1892 5 LATSTVIGGAVVGLLCA-----------ILVVMFIVYRMRKK 35 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~a-----------ilLIlfli~r~rKK 35 (64)
|+++++..+.++.++.| ++++.-.+|-+|++
T Consensus 22 gv~aA~~va~~vm~l~Gm~~lviKLLPWLil~~v~vW~~r~~ 63 (64)
T TIGR02975 22 GVLAALGVAVLFMALGGMFALMIKLLPWLILAVVVVWFIKSV 63 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44555555555555544 55566667776654
No 116
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=71.17 E-value=5.8 Score=30.34 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy1892 14 AVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 14 ~VvGlv~ailLIlfli~r~rK 34 (64)
+|||+++-+-|+++.|.|||-
T Consensus 10 ivig~i~i~~il~~~~~r~r~ 30 (293)
T PRK00269 10 IVIGIIVIAGILFDGWRRMRG 30 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455555544455566666744
No 117
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=70.98 E-value=12 Score=25.11 Aligned_cols=29 Identities=10% Similarity=0.254 Sum_probs=21.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 3 IPLATSTVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ailLIlfli~r 31 (64)
.|.-++.||.|.++=--+|+.++.+++|-
T Consensus 8 ~~a~Ia~mVlGFi~fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 8 KPAWIAAMVLGFIVFWPLGLALLAYMIWG 36 (115)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777667788888898886
No 118
>PRK09094 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=70.96 E-value=13 Score=24.63 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccC
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEE 44 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE 44 (64)
|=++.++|+|+-..++++.+.+.-+ |+-|+-|+||
T Consensus 75 ALvLTaIVIg~a~tA~~Lal~~r~y--~~~gt~d~~~ 109 (114)
T PRK09094 75 ALVLTAIVIGFAMTALFLVVALASR--GLTGTDHVDG 109 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCccccc
Confidence 4467888999888877776655423 3556667766
No 119
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=70.85 E-value=7.6 Score=28.55 Aligned_cols=13 Identities=15% Similarity=-0.036 Sum_probs=6.6
Q ss_pred chhHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVV 16 (64)
Q Consensus 4 ~~~~ag~IaG~Vv 16 (64)
.|.+++++.|.++
T Consensus 27 sG~~~a~~vG~~~ 39 (237)
T TIGR00297 27 WGYGHAWIMGVII 39 (237)
T ss_pred hHHHHHHHHHHHH
Confidence 4555555555443
No 120
>PRK10483 tryptophan permease; Provisional
Probab=70.81 E-value=7.1 Score=30.39 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 11 IGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
.||+. +.+.++++=.+++|+-|||
T Consensus 350 yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 350 YAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 35655 5555567777889988876
No 121
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=70.42 E-value=6.7 Score=24.91 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=7.2
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILV 24 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailL 24 (64)
|-.+.|+||-+|+.++ +|++
T Consensus 3 ~l~i~~iialiv~~ii-aIvv 22 (81)
T PF00558_consen 3 SLEILAIIALIVALII-AIVV 22 (81)
T ss_dssp -----HHHHHHHHHHH-HHHH
T ss_pred hHHHHHHHHHHHHHHH-HHHH
Confidence 3445555555544444 4433
No 122
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=70.38 E-value=7.3 Score=28.48 Aligned_cols=28 Identities=29% Similarity=0.687 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhcCCC
Q psy1892 11 IGGAVVGLLCAILVVMFIVYR-MRKKDEG 38 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r-~rKKdeg 38 (64)
|+=+|+|.+|.++.|+|++.. .+.|..|
T Consensus 247 i~ylvvg~i~~v~~i~~~~~~~~~~r~~g 275 (278)
T PF03381_consen 247 IAYLVVGGICLVLAIIFLIIHYFKPRKLG 275 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 555677777776666666654 3444333
No 123
>PRK07375 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=70.28 E-value=14 Score=23.83 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCC
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKR 47 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE~K~ 47 (64)
--+=++..+|+|+...++.+.+++.-+| +.|+-|.||-++
T Consensus 71 pQalvLtaIVI~~a~~A~~Lal~i~~yr--~~gt~d~d~l~~ 110 (112)
T PRK07375 71 PQALVLTAIVIGFATTAVMLALIVKLYK--DYGTLSESEIEK 110 (112)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCHHHhhc
Confidence 3355677888888877766666664333 345666666543
No 124
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=69.76 E-value=9.6 Score=24.99 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r~rKKde 37 (64)
..-++.|+++|+++++.=+.|++-+++|-||
T Consensus 110 ~~Rvllgl~~al~vlvAEv~l~~~y~~k~e~ 140 (142)
T PF11712_consen 110 PYRVLLGLFGALLVLVAEVVLYIRYLRKVEE 140 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445566666666665555666666666554
No 125
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=69.72 E-value=8.4 Score=29.39 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlf 27 (64)
+|-|+++|+++|+.+++.
T Consensus 342 lvl~~llG~~lg~~~vL~ 359 (377)
T PRK10381 342 VILAALIGGMLACGFVLL 359 (377)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777787777655544
No 126
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=69.66 E-value=14 Score=22.73 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
++++++.|.++|-+..++++.++++
T Consensus 16 ~l~~~lvG~~~g~~~~~l~~~l~~~ 40 (90)
T PF11808_consen 16 LLAAALVGWLFGHLWWALLLGLLLY 40 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3566667777777766666655444
No 127
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=69.65 E-value=7.9 Score=26.60 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=4.9
Q ss_pred HHHHHHhcC
Q psy1892 28 IVYRMRKKD 36 (64)
Q Consensus 28 li~r~rKKd 36 (64)
.++|+|+++
T Consensus 34 ~~~k~r~~~ 42 (201)
T TIGR02866 34 VVWKFRRKG 42 (201)
T ss_pred hhhhhhccc
Confidence 455666653
No 128
>COG2181 NarI Nitrate reductase gamma subunit [Energy production and conversion]
Probab=69.47 E-value=3.5 Score=30.45 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
.++++|...|+++.+=+++++++|.-.
T Consensus 88 ~ai~~G~iaGv~~liG~~~L~~RR~~~ 114 (228)
T COG2181 88 MAIVLGGIAGVLTLIGLTLLLLRRLFD 114 (228)
T ss_pred eeeehhhHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999999999988433
No 129
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=69.10 E-value=9.7 Score=28.67 Aligned_cols=33 Identities=36% Similarity=0.505 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCCCc
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYR-----MRKKDEGS 39 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r-----~rKKdegs 39 (64)
..|+|+-++..-...||+|+|+... -+||||.|
T Consensus 34 sc~~iG~fLlWyfviilvLm~~~ras~Wmse~K~D~~s 71 (243)
T PF15468_consen 34 SCGAIGSFLLWYFVIILVLMFFSRASVWMSEKKKDEDS 71 (243)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 3466666666666666666665433 34555543
No 130
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=68.95 E-value=11 Score=28.58 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRM 32 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~ 32 (64)
+.+-.|.|+|.+++..++=+++.|.
T Consensus 162 a~AT~Glv~G~liGgpi~~~lirk~ 186 (368)
T PF03616_consen 162 AAATFGLVVGGLIGGPIANWLIRKG 186 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444566666666666665565543
No 131
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=68.81 E-value=5.9 Score=31.25 Aligned_cols=21 Identities=14% Similarity=0.130 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy1892 15 VVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 15 VvGlv~ailLIlfli~r~rKK 35 (64)
+++..++++++.+++|++|||
T Consensus 529 i~~pp~~~l~~G~~~~~~Rrr 549 (552)
T TIGR03521 529 IGLPILLLLLFGLSFTYIRKR 549 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344446677777777765554
No 132
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=68.78 E-value=5.5 Score=25.78 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 13 GAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~ 30 (64)
-+.|++|+-||||+|+=+
T Consensus 29 tILivLVIIiLlImlfqs 46 (85)
T PF10717_consen 29 TILIVLVIIILLIMLFQS 46 (85)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 355666666666665543
No 133
>KOG4818|consensus
Probab=68.66 E-value=3.9 Score=32.17 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r 31 (64)
+|.|+.++.++++++|.++|.|
T Consensus 331 ivVg~~l~gl~~~vliaylIgr 352 (362)
T KOG4818|consen 331 IAVGAILAGLVLVVLIAYLIGR 352 (362)
T ss_pred hHHHHHHHHHHHHHHHHhheeh
Confidence 3445555555566666777763
No 134
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=68.64 E-value=9.3 Score=23.28 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIV 29 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli 29 (64)
.++.+|+.+..+.|+.+|.++-+.++
T Consensus 31 ~kL~SGv~~~~~~GfaiG~~~AlvLv 56 (64)
T PF09472_consen 31 QKLESGVMATGIKGFAIGFLFALVLV 56 (64)
T ss_pred chhHHHHhhhhhHHHHHHHHHHHHHH
Confidence 35667777777777777766665554
No 135
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=68.63 E-value=11 Score=23.42 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccccC
Q psy1892 13 GAVVGLLCAILVVMFIVYRMRKKDEGSYALEE 44 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r~rKKdegsY~leE 44 (64)
-++|.++|-+.+-+++-||.|+|..+.-+-+|
T Consensus 9 plivf~ifVap~WL~lHY~sk~~~~~gLs~~d 40 (75)
T PF06667_consen 9 PLIVFMIFVAPIWLILHYRSKWKSSQGLSEED 40 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCHHH
Confidence 34556666666666677775555544444333
No 136
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=68.37 E-value=11 Score=25.91 Aligned_cols=9 Identities=11% Similarity=0.324 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy1892 7 TSTVIGGAV 15 (64)
Q Consensus 7 ~ag~IaG~V 15 (64)
..|+|++++
T Consensus 137 ~~g~vg~l~ 145 (167)
T PF11157_consen 137 VFGLVGALL 145 (167)
T ss_pred HHHHHHHHH
Confidence 333333333
No 137
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=67.68 E-value=7.5 Score=25.48 Aligned_cols=19 Identities=5% Similarity=0.347 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVV 25 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLI 25 (64)
.||.+.++..|++++++++
T Consensus 72 ~AG~~tn~fyGf~igL~i~ 90 (97)
T PF05440_consen 72 IAGIFTNMFYGFIIGLVIA 90 (97)
T ss_pred ehhhhhhHHHHHHHHHHHH
Confidence 4566665555555554443
No 138
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=67.57 E-value=9.7 Score=25.68 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 11 IGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r~rK 34 (64)
+.=++.++++-+.+|+++.|..||
T Consensus 18 l~qv~~~L~lVl~lI~~~aWLlkR 41 (124)
T PRK11486 18 LLQVSGALIGIIALILAAAWLVKR 41 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555556666666555
No 139
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=67.46 E-value=11 Score=27.18 Aligned_cols=26 Identities=15% Similarity=0.269 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAI-LVVMFIVYR 31 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ai-lLIlfli~r 31 (64)
+...-.--+++|+++-+ .+++++.|+
T Consensus 26 ffsthm~tILiaIvVliiiiivli~lc 52 (189)
T PF05568_consen 26 FFSTHMYTILIAIVVLIIIIIVLIYLC 52 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334455554443 333334444
No 140
>PHA03281 envelope glycoprotein E; Provisional
Probab=67.05 E-value=6.1 Score=33.16 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfl 28 (64)
.+++++|..+|+++.++|.+++
T Consensus 556 y~~l~~~~a~~~ll~l~~~~~c 577 (642)
T PHA03281 556 YAAITGGFAALALLCLAIALIC 577 (642)
T ss_pred ehhhhhhhHHHHHHHHHHHHHH
Confidence 4667777777777776666655
No 141
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=67.03 E-value=7.7 Score=27.13 Aligned_cols=32 Identities=22% Similarity=0.581 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHH--HHHHhc--CCCcccccCCC
Q psy1892 15 VVGLLCAILVVMFIV--YRMRKK--DEGSYALEEPK 46 (64)
Q Consensus 15 VvGlv~ailLIlfli--~r~rKK--degsY~leE~K 46 (64)
|++.+++++++.|+| +|.||| .+-+|++=-++
T Consensus 100 Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~~~ 135 (163)
T PF06679_consen 100 VLVGLSALAILYFVIRTFRLRRRNRKTRKYGVLTTR 135 (163)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccceeecccCCC
Confidence 344444444444433 445543 34578775443
No 142
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=66.91 E-value=14 Score=20.83 Aligned_cols=27 Identities=15% Similarity=0.389 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccC
Q psy1892 15 VVGLLCAILVVMFIVYRMRKKDEGSYALEE 44 (64)
Q Consensus 15 VvGlv~ailLIlfli~r~rKKdegsY~leE 44 (64)
.+.++++++.+..++|-.|+ |+||=.|
T Consensus 8 p~sl~l~~~~l~~f~Wavk~---GQfdD~e 34 (45)
T PF03597_consen 8 PVSLILGLIALAAFLWAVKS---GQFDDLE 34 (45)
T ss_pred HHHHHHHHHHHHHHHHHHcc---CCCCCCc
Confidence 34556666666666776665 5565444
No 143
>PLN02731 Putative lipid phosphate phosphatase
Probab=66.80 E-value=8.1 Score=29.61 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhcCCCccc----ccCCCCCCCCCccccCC
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR-MRKKDEGSYA----LEEPKRSPASNSYMKNS 58 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r-~rKKdegsY~----leE~K~~~~~~~y~k~~ 58 (64)
+++|.++|+++|.+.-....-. ...++.+.|+ ++|++...+.++|...+
T Consensus 244 VlaG~lLG~~iA~~~Y~~yfp~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 297 (333)
T PLN02731 244 VFAGGLLGLAISTICYLQFFPPPYHTEGWGPYAYFQVLEAARVQGAANGAVQQP 297 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCCChHHHHHhhccccCCcCcccccCC
Confidence 5666666666553221111100 2233445554 34554444445565443
No 144
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=66.66 E-value=13 Score=20.86 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
+.|+|-|.+--.+++.++..+.-|
T Consensus 6 L~GiVlGli~vtl~Glfv~Ay~QY 29 (37)
T PF02529_consen 6 LSGIVLGLIPVTLAGLFVAAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHH
Confidence 445555555445555555555555
No 145
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=66.46 E-value=6 Score=27.34 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=16.9
Q ss_pred CcchhHHHHHHHHHHHHHH
Q psy1892 2 TIPLATSTVIGGAVVGLLC 20 (64)
Q Consensus 2 ~~~~~~ag~IaG~VvGlv~ 20 (64)
.||.+..|++.|.++|++|
T Consensus 103 ~~P~v~~gLviGTIiGV~f 121 (140)
T PF04284_consen 103 VQPQVIVGLVIGTIIGVAF 121 (140)
T ss_pred cCChhhHHHHHHHHHHHHH
Confidence 5899999999999999886
No 146
>PF15122 TMEM206: TMEM206 protein family
Probab=66.44 E-value=4.7 Score=31.00 Aligned_cols=24 Identities=21% Similarity=0.700 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHH-----------HHHHHHhcCCCc
Q psy1892 16 VGLLCAILVVMF-----------IVYRMRKKDEGS 39 (64)
Q Consensus 16 vGlv~ailLIlf-----------li~r~rKKdegs 39 (64)
+|++||+++.+| .+.|+|||+...
T Consensus 255 ia~lCGvFlaLfKAa~FaklsikWmikiRkr~lk~ 289 (298)
T PF15122_consen 255 IAILCGVFLALFKAAEFAKLSIKWMIKIRKRHLKR 289 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777666 566788887653
No 147
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=66.26 E-value=14 Score=25.18 Aligned_cols=25 Identities=24% Similarity=0.572 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfl 28 (64)
|...--++.|+++|+++|+.++++.
T Consensus 172 P~~~~~~~~g~~~G~~~~~~~~~~~ 196 (226)
T TIGR01006 172 PNPKRNLLIGFLLGLVVALIIVLLK 196 (226)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556677888888776555443
No 148
>PRK10404 hypothetical protein; Provisional
Probab=66.12 E-value=8 Score=24.85 Aligned_cols=19 Identities=42% Similarity=0.609 Sum_probs=10.3
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q psy1892 3 IPLATSTVIGGAVVGLLCAIL 23 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ail 23 (64)
+|--..|+ ++.||+++|+|
T Consensus 79 ~Pw~avGi--aagvGlllG~L 97 (101)
T PRK10404 79 KPWQGIGV--GAAVGLVLGLL 97 (101)
T ss_pred CcHHHHHH--HHHHHHHHHHH
Confidence 34444444 33477777766
No 149
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=66.08 E-value=10 Score=28.04 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
|...--++.|+++|+++|+.+++++=+
T Consensus 394 P~~~~~l~~~~~~Gl~lg~~~~~l~e~ 420 (444)
T TIGR03017 394 PRLLLNLVLSIFLGMLLGIGFAFLAEL 420 (444)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445667788888888776665444
No 150
>PF15050 SCIMP: SCIMP protein
Probab=66.07 E-value=16 Score=25.30 Aligned_cols=28 Identities=11% Similarity=0.360 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy1892 11 IGGAVVGLLCAILVVMFIVYRMRKKDEGSY 40 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r~rKKdegsY 40 (64)
+|-++|++++| ||+|++.|..-|..+..
T Consensus 14 VaII~vS~~lg--lIlyCvcR~~lRqGkkw 41 (133)
T PF15050_consen 14 VAIILVSVVLG--LILYCVCRWQLRQGKKW 41 (133)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHccccc
Confidence 34455555544 57788877544443333
No 151
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=65.98 E-value=8.4 Score=22.41 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCA 21 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~a 21 (64)
.+-+..+|.++|++|+
T Consensus 2 ~llsl~~G~~vG~~~~ 17 (49)
T TIGR03510 2 YLLSLGAGLLVGALYS 17 (49)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3557788999999887
No 152
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=65.60 E-value=12 Score=24.82 Aligned_cols=21 Identities=24% Similarity=0.369 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILVVMFIV 29 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli 29 (64)
...+|+|+++++.-+||.+.+
T Consensus 18 ~~LVGVv~~al~~SlLIalaa 38 (102)
T PF15176_consen 18 PFLVGVVVTALVTSLLIALAA 38 (102)
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 356677777777766666654
No 153
>PRK12658 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=65.29 E-value=17 Score=24.38 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccC
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEE 44 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE 44 (64)
|=+..++|+|+-..++++.+.++-+|+ .|+-|.||
T Consensus 75 ALvLTAIVIg~a~tA~~L~L~~r~~~~--~gt~d~d~ 109 (125)
T PRK12658 75 ALILTAIVIGFGLLAFLLVLAYRAYQD--LGTDDTDE 109 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCcHHH
Confidence 346778888888777666665543333 34444444
No 154
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=65.14 E-value=5.2 Score=27.84 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1892 16 VGLLCAILVVMFIVYR 31 (64)
Q Consensus 16 vGlv~ailLIlfli~r 31 (64)
+..++|+.+++|++|+
T Consensus 288 ~~~~~G~~~~~f~LYK 303 (354)
T PF05795_consen 288 VLSVLGIPLIFFLLYK 303 (354)
T ss_pred hhhhHHHHHHHHHHhc
Confidence 3345667888888887
No 155
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=65.06 E-value=3.6 Score=31.08 Aligned_cols=28 Identities=39% Similarity=0.635 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
.|+++|++.-.+++++++++.-|++|||
T Consensus 217 ~g~~~G~~~L~ll~~lv~~~vr~krk~k 244 (278)
T PF06697_consen 217 VGVVGGVVLLGLLSLLVAMLVRYKRKKK 244 (278)
T ss_pred EEehHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3444444433333333344444434333
No 156
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=64.56 E-value=13 Score=23.63 Aligned_cols=19 Identities=21% Similarity=0.586 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVM 26 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIl 26 (64)
.|+.=|+|+|+++..+.++
T Consensus 50 IGILYGlVIGlil~~i~~~ 68 (75)
T COG4064 50 IGILYGLVIGLILCMIYIL 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667777888766644333
No 157
>PF14927 Neurensin: Neurensin
Probab=64.39 E-value=9.8 Score=26.13 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
.++|++.-.+-|++++++|++-++-
T Consensus 99 ~laG~~L~~lGg~lla~~Ll~s~~~ 123 (140)
T PF14927_consen 99 KLAGLILLCLGGILLAVCLLVSIWK 123 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677777778888888888766654
No 158
>PTZ00046 rifin; Provisional
Probab=64.31 E-value=11 Score=29.46 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=28.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhc
Q psy1892 3 IPLATSTVIGGAVVGLLCAILVVMFIVYR---MRKK 35 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ailLIlfli~r---~rKK 35 (64)
++.+++-+||-+|+-|+.-|+=++|=.+| |+||
T Consensus 314 ~taIiaSiiAIvVIVLIMvIIYLILRYRRKKKMkKK 349 (358)
T PTZ00046 314 QTAIIASIVAIVVIVLIMVIIYLILRYRRKKKMKKK 349 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 56789999999999999999999999999 5554
No 159
>PRK10983 putative inner membrane protein; Provisional
Probab=64.16 E-value=17 Score=27.33 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCAIL--VVMFIVYR 31 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ail--LIlfli~r 31 (64)
++++|...-+++|+++|.. .++..+++
T Consensus 314 ~~~~G~~~fG~~G~~lgp~i~a~~~~l~~ 342 (368)
T PRK10983 314 GVIGGLIAFGMIGLFIGPVVLAVSYRLFS 342 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666778888833 33444454
No 160
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=63.94 E-value=6.8 Score=21.73 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLC 20 (64)
Q Consensus 8 ag~IaG~VvGlv~ 20 (64)
|-+|||+++++++
T Consensus 16 AP~iagIi~s~iv 28 (35)
T PF13940_consen 16 APIIAGIIASLIV 28 (35)
T ss_pred hHHHHHHHHHHHH
Confidence 4456666655443
No 161
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=63.09 E-value=10 Score=23.90 Aligned_cols=14 Identities=43% Similarity=0.859 Sum_probs=8.3
Q ss_pred HHHHHHH-HHhcCCC
Q psy1892 25 VMFIVYR-MRKKDEG 38 (64)
Q Consensus 25 Ilfli~r-~rKKdeg 38 (64)
++++.|| .||||+-
T Consensus 25 ~~wi~~Ra~~~~DKT 39 (72)
T PF13268_consen 25 GIWILWRALRKKDKT 39 (72)
T ss_pred HHHHHHHHHHcCCCc
Confidence 3455666 6666654
No 162
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=62.81 E-value=5.2 Score=26.38 Aligned_cols=19 Identities=26% Similarity=0.078 Sum_probs=14.8
Q ss_pred cchhHHHHHHHHHHHHHHH
Q psy1892 3 IPLATSTVIGGAVVGLLCA 21 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~a 21 (64)
|.+++.|+.+|++||++-.
T Consensus 41 R~slL~Gi~~G~~vG~~~f 59 (118)
T PF12597_consen 41 RDSLLYGIAGGFGVGGLRF 59 (118)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 4578889999999988743
No 163
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=62.72 E-value=22 Score=25.99 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
|...--+..|+++|++++.++.+++.+
T Consensus 330 P~~~~~l~~~~~~gl~l~~~~~l~~~~ 356 (362)
T TIGR01010 330 PYRLYNILATFVILLILYGVLSLLLAS 356 (362)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444566777777777665555554
No 164
>PHA03231 glycoprotein BALF4; Provisional
Probab=62.35 E-value=12 Score=32.26 Aligned_cols=17 Identities=41% Similarity=0.798 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy1892 18 LLCAILVVMFIVYRMRK 34 (64)
Q Consensus 18 lv~ailLIlfli~r~rK 34 (64)
+++|++++.|+++|+-+
T Consensus 712 lvia~vv~v~l~~rr~~ 728 (829)
T PHA03231 712 LVIAVLVAVFLAYRRVR 728 (829)
T ss_pred HHHHHhhhhhHHHHHHH
Confidence 34456677777777444
No 165
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=62.27 E-value=9.8 Score=27.56 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q psy1892 8 STVIGGAVVGL 18 (64)
Q Consensus 8 ag~IaG~VvGl 18 (64)
.|.++++++|.
T Consensus 21 sGa~aa~~vG~ 31 (226)
T PF01940_consen 21 SGALAAFLVGT 31 (226)
T ss_pred hHHHHHHHHHH
Confidence 34455555555
No 166
>TIGR00941 2a6301s03 Multicomponent Na+:H+ antiporter, MnhC subunit.
Probab=62.03 E-value=18 Score=23.58 Aligned_cols=27 Identities=11% Similarity=0.289 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
|=+..++|+|+..-.+++.+.++-+|+
T Consensus 71 ALvLTAIVIg~a~tA~~Lal~~r~~~~ 97 (104)
T TIGR00941 71 ALILTAIVIGFATTALFLVVALRAYQV 97 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678888888777666655543443
No 167
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=62.02 E-value=2.6 Score=33.04 Aligned_cols=31 Identities=23% Similarity=0.008 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
+++.|++++++|.++++ ++++..-+|+|+++
T Consensus 356 ~vVlgvavlivVv~viv-~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 356 GVVLGVAVLIVVVGVIV-WVCLRCRRRRRQRD 386 (439)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHh-heeeeehhcccccc
Confidence 34445444444444433 33444444444444
No 168
>KOG1226|consensus
Probab=61.84 E-value=3.4 Score=35.32 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r 31 (64)
|...||+.+..+.|+++++|+
T Consensus 716 i~lgvv~~ivligl~llliwk 736 (783)
T KOG1226|consen 716 IVLGVVAGIVLIGLALLLIWK 736 (783)
T ss_pred ehHHHHHHHHHHHHHHHHHHH
Confidence 333444444556666666776
No 169
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=61.79 E-value=14 Score=25.13 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlf 27 (64)
++.|+++|.++|+.++.+.-+|
T Consensus 178 ~~~g~~~G~~~~~~~~~~~~~~ 199 (226)
T TIGR01006 178 LLIGFLLGLVVALIIVLLKELL 199 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888887666554443
No 170
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=61.77 E-value=13 Score=29.01 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=26.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 3 IPLATSTVIGGAVVGLLCAILVVMFIVYRM 32 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ailLIlfli~r~ 32 (64)
+..+++-+||-+|+-|+.-|+=++|=.+|.
T Consensus 309 ~t~IiaSiIAIvvIVLIMvIIYLILRYRRK 338 (353)
T TIGR01477 309 YTPIIASIIAILIIVLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 467889999999999999999999999993
No 171
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=61.73 E-value=21 Score=22.67 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy1892 14 AVVGLLCAILVVMFI 28 (64)
Q Consensus 14 ~VvGlv~ailLIlfl 28 (64)
+++++++|++|++.-
T Consensus 7 llL~l~LA~lLlisS 21 (95)
T PF07172_consen 7 LLLGLLLAALLLISS 21 (95)
T ss_pred HHHHHHHHHHHHHHh
Confidence 456677766665553
No 172
>PF13584 BatD: Oxygen tolerance
Probab=61.44 E-value=21 Score=26.95 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~ 30 (64)
+...++..+++.++++++.+
T Consensus 428 ~~~l~~~~~l~~~~~~~~~~ 447 (484)
T PF13584_consen 428 FWLLLLLPLLLLLLLLILRR 447 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 173
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=61.42 E-value=7.5 Score=21.23 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILVVMFIV 29 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli 29 (64)
|+++.+++.+++.+.++.=++
T Consensus 18 a~~gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 18 AVIGLIILLILVLLAIFAPFI 38 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 445555555444444444333
No 174
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.10 E-value=18 Score=24.64 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCA 21 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~a 21 (64)
.+++|++.|+++|.++=
T Consensus 51 efIsGilVGa~iG~llD 67 (116)
T COG5336 51 EFISGILVGAGIGWLLD 67 (116)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888888887653
No 175
>COG1006 MnhC Multisubunit Na+/H+ antiporter, MnhC subunit [Inorganic ion transport and metabolism]
Probab=61.00 E-value=25 Score=23.45 Aligned_cols=38 Identities=18% Similarity=0.411 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCC
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKR 47 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE~K~ 47 (64)
|=+...+|+|+..-++++.+.+.-+ |+-|+-|.||-++
T Consensus 74 ALILTAIVIgfa~tal~L~l~~~~y--~~~~T~~~~~~~~ 111 (115)
T COG1006 74 ALILTAIVIGFATTALALVLAYRAY--KEYGTLDVDELRR 111 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCccHHHhhc
Confidence 3456677888777766666555423 3667777777554
No 176
>cd06582 TM_PBP1_LivH_like Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transpo
Probab=60.84 E-value=23 Score=24.82 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMR 33 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~r 33 (64)
.++++++++|.+++.++-.+++.++|
T Consensus 53 ~~i~~a~~~~~~~g~l~~~~~~~~~~ 78 (272)
T cd06582 53 LALLLALLVAALLGVLLERLVLRPLR 78 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555665555444334443333
No 177
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=60.77 E-value=20 Score=20.44 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy1892 20 CAILVVMFIVYRMRKKD 36 (64)
Q Consensus 20 ~ailLIlfli~r~rKKd 36 (64)
++++++.+.+|++.+|+
T Consensus 37 ~~~l~~~~~~~~~~~~~ 53 (55)
T PF03988_consen 37 AALLAVVLALWYRSKRY 53 (55)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 33445555556555554
No 178
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=60.61 E-value=20 Score=22.22 Aligned_cols=29 Identities=38% Similarity=0.604 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHH---HHhcCCCcccccC
Q psy1892 14 AVVGLLCAILVVMFIVYR---MRKKDEGSYALEE 44 (64)
Q Consensus 14 ~VvGlv~ailLIlfli~r---~rKKdegsY~leE 44 (64)
+|+.++|.+|+. ++-- +-.-||-+||.|.
T Consensus 6 ~vialLC~aLva--~vQ~APQYa~GeeP~YDEdd 37 (65)
T PF10731_consen 6 IVIALLCVALVA--IVQSAPQYAPGEEPSYDEDD 37 (65)
T ss_pred hHHHHHHHHHHH--HHhcCcccCCCCCCCcCccc
Confidence 456667766655 2321 5667899999865
No 179
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=60.38 E-value=12 Score=29.76 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC------CcccccCCCC
Q psy1892 13 GAVVGLLCAILVVMFIVYRMRKKDE------GSYALEEPKR 47 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r~rKKde------gsY~leE~K~ 47 (64)
+=++.+++.++-+++++|+.|+|+. -+|+++++..
T Consensus 257 ~Q~lSl~~il~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (460)
T PRK13108 257 NSFTSTFVFIGAVVYIILAPKGREAPGALRGSEYVVDEALE 297 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCccccCCcccccCcccC
Confidence 3344444444444455555555554 5788887644
No 180
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=60.26 E-value=27 Score=20.04 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 12 GGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r~rKKd 36 (64)
...++.+++.++..++..+|.+|+|
T Consensus 96 ~~~~~~~~~~~i~~~~~~~~~~k~~ 120 (121)
T PF02687_consen 96 IVFIIILLISIIASLIPIRRILKIN 120 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3444444555555556666655544
No 181
>PRK08389 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=60.06 E-value=22 Score=22.96 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccC
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEE 44 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE 44 (64)
-+=++..+|+|+...++.+.+++.-+|+ .|+-|.||
T Consensus 73 QalvLtaIVI~~a~~A~~Lal~i~~yr~--~gt~d~d~ 108 (114)
T PRK08389 73 QALVLTAIVIGVSTTALALSVAIKLYEK--YGTLNVEE 108 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCHHH
Confidence 3556778888888777666666653443 34555555
No 182
>PLN03150 hypothetical protein; Provisional
Probab=59.99 E-value=2.3 Score=33.79 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMR 33 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~r 33 (64)
.+++.|+++++++.++.+ +++||+|
T Consensus 547 i~~~~~~~~~~l~~~~~~-~~~~~~r 571 (623)
T PLN03150 547 IGIAFGVSVAFLFLVICA-MCWWKRR 571 (623)
T ss_pred EEEEhHHHHHHHHHHHHH-hhheeeh
Confidence 344455555444433333 3344444
No 183
>KOG3514|consensus
Probab=59.96 E-value=8.7 Score=34.98 Aligned_cols=26 Identities=35% Similarity=0.682 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHh
Q psy1892 9 TVIGGAVVGLLCA-ILVVMFIVYRMRK 34 (64)
Q Consensus 9 g~IaG~VvGlv~a-ilLIlfli~r~rK 34 (64)
..+.|+|||++.| +|.|+.+.|-|-|
T Consensus 1512 ssttGmVvGIvaAaaLcILilL~am~k 1538 (1591)
T KOG3514|consen 1512 SSTTGMVVGIVAAAALCILILLYAMYK 1538 (1591)
T ss_pred CCccchhhHHHHHHHHHHHHHHhhccc
Confidence 4578999999998 5566666776776
No 184
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=59.80 E-value=17 Score=24.24 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 14 AVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 14 ~VvGlv~ailLIlfli~r~rKKd 36 (64)
+++.++.+++.+.+-.++++|||
T Consensus 254 ~~~~~~~~~v~l~la~~~F~rrD 276 (277)
T PF12679_consen 254 LLILLAYTLVFLALAYYRFQRRD 276 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444555666667889988
No 185
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=59.49 E-value=17 Score=24.60 Aligned_cols=27 Identities=7% Similarity=0.384 Sum_probs=20.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
.+..--++-|+++|+.++++.++|++.
T Consensus 86 ~~~~~dlL~G~liGff~g~~~~~~L~~ 112 (140)
T PF13373_consen 86 SGHNDDLLWGLLIGFFFGLFSLFWLLR 112 (140)
T ss_pred cchHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 345566788999999999888777764
No 186
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=59.18 E-value=22 Score=21.18 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q psy1892 8 STVIGGAVVGL 18 (64)
Q Consensus 8 ag~IaG~VvGl 18 (64)
.++++|++.|+
T Consensus 10 ~a~~~Gi~aGI 20 (81)
T PF07019_consen 10 IALLAGIAAGI 20 (81)
T ss_pred HHHHHHHHhhh
Confidence 34455555444
No 187
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=59.11 E-value=23 Score=22.49 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCA 21 (64)
Q Consensus 9 g~IaG~VvGlv~a 21 (64)
|+.=|+|+|+++.
T Consensus 51 GIlYG~viGlli~ 63 (77)
T PRK01026 51 GILYGLVIGLLIV 63 (77)
T ss_pred HHHHHHHHHHHHH
Confidence 4444455554444
No 188
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=58.94 E-value=9.6 Score=26.74 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAIL 23 (64)
Q Consensus 9 g~IaG~VvGlv~ail 23 (64)
|.+.|+++|++..++
T Consensus 349 GallG~liG~~~~~i 363 (367)
T PF04286_consen 349 GALLGGLIGLLQYLI 363 (367)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444455544433
No 189
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=58.88 E-value=13 Score=25.10 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlf 27 (64)
+|-+++|+++|++++.|+=.+
T Consensus 2 ~~eL~~gaalG~~~~eLlk~v 22 (147)
T PF05659_consen 2 IAELVGGAALGAVFGELLKAV 22 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777665443
No 190
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=58.87 E-value=12 Score=22.71 Aligned_cols=8 Identities=50% Similarity=0.908 Sum_probs=4.2
Q ss_pred HHHHHHHH
Q psy1892 16 VGLLCAIL 23 (64)
Q Consensus 16 vGlv~ail 23 (64)
+|+|+|.|
T Consensus 83 vG~llG~L 90 (94)
T PF05957_consen 83 VGFLLGLL 90 (94)
T ss_pred HHHHHHHH
Confidence 55555544
No 191
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=58.82 E-value=11 Score=24.98 Aligned_cols=13 Identities=46% Similarity=0.649 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q psy1892 12 GGAVVGLLCAILV 24 (64)
Q Consensus 12 aG~VvGlv~ailL 24 (64)
.|+.||+++|+||
T Consensus 89 vaAaVGlllGlLl 101 (104)
T COG4575 89 VAAAVGLLLGLLL 101 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666666654
No 192
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=58.76 E-value=24 Score=20.55 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccC
Q psy1892 15 VVGLLCAILVVMFIVYRMRKKDEGSYALEE 44 (64)
Q Consensus 15 VvGlv~ailLIlfli~r~rKKdegsY~leE 44 (64)
-+.++++++.+..++|-.|+ |+||=.|
T Consensus 9 piSl~l~~~~l~~f~Wavk~---GQfDDle 35 (51)
T TIGR00847 9 PISLLLGGVGLVAFLWSLKS---GQYDDLK 35 (51)
T ss_pred HHHHHHHHHHHHHHHHHHcc---CCCCCCc
Confidence 34556666666667776666 5665444
No 193
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=58.32 E-value=22 Score=25.51 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy1892 17 GLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 17 Glv~ailLIlfli~r~rKKd 36 (64)
+..+.+++=.+++|+.|||+
T Consensus 341 ~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 341 ATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 44444444556677777654
No 194
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=58.13 E-value=23 Score=24.76 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhc
Q psy1892 24 VVMFIVYRMRKK 35 (64)
Q Consensus 24 LIlfli~r~rKK 35 (64)
++++.++|+|+|
T Consensus 40 lli~~~~kyr~r 51 (217)
T TIGR01432 40 LFTIFLVKYRYR 51 (217)
T ss_pred HHHHHHHHHHhc
Confidence 333444555544
No 195
>TIGR02595 PEP_exosort PEP-CTERM putative exosortase interaction domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms.
Probab=58.10 E-value=17 Score=18.14 Aligned_cols=10 Identities=40% Similarity=0.723 Sum_probs=4.5
Q ss_pred HHHHHHHHhc
Q psy1892 26 MFIVYRMRKK 35 (64)
Q Consensus 26 lfli~r~rKK 35 (64)
.++..|+|||
T Consensus 15 ~~~~~rrrk~ 24 (26)
T TIGR02595 15 GFLLLRRRRK 24 (26)
T ss_pred HHHHHhhccc
Confidence 3444444443
No 196
>PRK10720 uracil transporter; Provisional
Probab=58.08 E-value=8.3 Score=29.55 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCC
Q psy1892 12 GGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEP 45 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r~rKKdegsY~leE~ 45 (64)
-|+..|.++|++|=+++-.|+|-|.|+ |++|..
T Consensus 389 ~gi~~g~~~ai~Lnlll~~~~~~~~~~-~~~~~~ 421 (428)
T PRK10720 389 KGMALATIVGIGLSLIFKLISKLRPEE-EVLDAE 421 (428)
T ss_pred CcHHHHHHHHHHHHHHhcccccccCCc-cccccc
Confidence 355566666666555554444444444 566543
No 197
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=57.69 E-value=15 Score=22.98 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q psy1892 13 GAVVGLLCA 21 (64)
Q Consensus 13 G~VvGlv~a 21 (64)
|++-|+++|
T Consensus 48 GIlYG~v~G 56 (70)
T PF04210_consen 48 GILYGLVIG 56 (70)
T ss_pred HHHHHHHHH
Confidence 444444444
No 198
>KOG1094|consensus
Probab=57.64 E-value=18 Score=31.21 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC--CcccccCCC
Q psy1892 14 AVVGLLCAILVVMFIVYRMRKKDE--GSYALEEPK 46 (64)
Q Consensus 14 ~VvGlv~ailLIlfli~r~rKKde--gsY~leE~K 46 (64)
.|.-+++-+++|..+.||.|+--+ .|.++++.+
T Consensus 397 f~~if~iva~ii~~~L~R~rr~~~ka~s~~~n~k~ 431 (807)
T KOG1094|consen 397 FVAIFLIVALIIALMLWRWRRLLSKASSRVLNEKL 431 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccce
Confidence 333334445555666676443322 456665543
No 199
>PRK10740 branched-chain amino acid transporter permease subunit LivH; Reviewed
Probab=57.37 E-value=25 Score=25.60 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
..|++.+++++++++..+.-+.+.+.|+
T Consensus 74 ~~a~~~a~~~~~~ig~~~~rl~~r~l~~ 101 (308)
T PRK10740 74 AAGFVGAIVIASAYGWSIERVAYRPVRN 101 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455666666666665444444444444
No 200
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=57.28 E-value=21 Score=21.76 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHh
Q psy1892 15 VVGLLCAILVVMFIVYR-MRK 34 (64)
Q Consensus 15 VvGlv~ailLIlfli~r-~rK 34 (64)
|++++.|+++=+|+..| ++|
T Consensus 4 ilali~G~~~Gff~ar~~~~k 24 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKYMEK 24 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 33344443344444444 444
No 201
>PF10032 Pho88: Phosphate transport (Pho88); InterPro: IPR019263 This entry represents proteins involved in inorganic phosphate transport, as well as telomere length regulation and maintenance [, , , ].
Probab=57.19 E-value=53 Score=23.37 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=29.6
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCcccccCCC
Q psy1892 1 MTIPLATSTVIGGAVVGLLCAILVVMFIVYR-MRKKDEGSYALEEPK 46 (64)
Q Consensus 1 ~~~~~~~ag~IaG~VvGlv~ailLIlfli~r-~rKKdegsY~leE~K 46 (64)
|++|.++-.+=++-++--++.+++.+++..| .+|+|.......|+.
T Consensus 23 ~~dP~v~~~vR~~y~~s~~i~~~~y~yi~~~I~~knD~t~lk~~ep~ 69 (192)
T PF10032_consen 23 FEDPQVLFYVRIAYVASQLIILGVYLYIFSKIKKKNDLTTLKYVEPA 69 (192)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEeCCC
Confidence 5678888777777777666666666666666 455565555555554
No 202
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=57.13 E-value=3.5 Score=32.65 Aligned_cols=42 Identities=24% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCcccccCCCCC
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYRM-RKKDEGSYALEEPKRS 48 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r~-rKKdegsY~leE~K~~ 48 (64)
...+++.+|+++++.++|+..+.+.. +++.+.+....+.+-+
T Consensus 454 ~~~~~~~~vi~~illi~l~~cc~~~~r~~~~~~~~~i~~~~~~ 496 (501)
T PF00974_consen 454 WLSIIAIAVILLILLILLIRCCCRCRRRRRPKRKRGIYESKVS 496 (501)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCcccccccc
Confidence 34455666666666665555554443 3333333444444433
No 203
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=56.84 E-value=14 Score=26.43 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q psy1892 15 VVGLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 15 VvGlv~ailLIlfli~r~rKKde 37 (64)
=++++++.|.++..+||.||-.+
T Consensus 12 Y~~vl~~sl~~Fs~~YRkr~~~~ 34 (190)
T PF09802_consen 12 YVAVLVGSLATFSSIYRKRKAAK 34 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777888888889998766443
No 204
>PRK14766 lipoprotein signal peptidase; Provisional
Probab=56.79 E-value=12 Score=26.91 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy1892 14 AVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 14 ~VvGlv~ailLIlfli~r~rK 34 (64)
+++|++++++++++-.++.+|
T Consensus 164 I~iG~~l~vi~li~~~~~~~~ 184 (201)
T PRK14766 164 VNIAIGLTILFTIIELVLYIK 184 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 455654444444443334343
No 205
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=56.54 E-value=26 Score=24.73 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
...+.|.+.|+++.+=+++++++|+.++
T Consensus 87 ~~~~~g~~~G~l~lvGl~~Ll~RR~~~~ 114 (222)
T PF02665_consen 87 LAEVLGDIAGLLALVGLLILLVRRLFDP 114 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4567788889888888888888885543
No 206
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=56.23 E-value=25 Score=21.76 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 12 GGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r~rKK 35 (64)
+-+++.+++.+.+-+++=|+.|+|
T Consensus 8 ~Pliif~ifVap~wl~lHY~~k~~ 31 (75)
T TIGR02976 8 IPLIIFVIFVAPLWLILHYRSKRK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334455555555555555653333
No 207
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=56.20 E-value=21 Score=28.14 Aligned_cols=22 Identities=18% Similarity=0.455 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r 31 (64)
|.||++ ..+++++++++++++|
T Consensus 43 a~iaav-wlil~ll~ll~~~~~~ 64 (418)
T cd07912 43 ASIPAA-CLILSLLFLLVYLITR 64 (418)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHh
Confidence 335554 3445556666666665
No 208
>PRK09664 tryptophan permease TnaB; Provisional
Probab=56.03 E-value=19 Score=28.08 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 12 GGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r~rKKd 36 (64)
||+. +.+.++++=.+++|+-|||+
T Consensus 352 AG~~-~~il~~ilP~lM~~~~Rk~~ 375 (415)
T PRK09664 352 AGLC-ATIWAVIIPAVLAIKARKKF 375 (415)
T ss_pred HHHH-HHHHHHHHHHHHHHHHhccc
Confidence 5554 55666677778999988773
No 209
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=55.97 E-value=45 Score=23.49 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
|=+..++|||+-..++++.+.+.-+|+.
T Consensus 75 ALVLTAIVIg~a~tA~~LaL~~r~y~~~ 102 (163)
T PRK07946 75 AMILTAIVITMGITAFVLALAYRSYRLT 102 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467788888888877766665434443
No 210
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=55.81 E-value=32 Score=22.91 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q psy1892 17 GLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 17 Glv~ailLIlfli~r~rKKde 37 (64)
|++++.++=.|+.=+.|+||-
T Consensus 83 G~iiG~~~Ga~l~El~~~~~~ 103 (140)
T PF04306_consen 83 GLIIGPFLGAFLGELLRGKDF 103 (140)
T ss_pred HHHHHHHHHHHHHHHHhCCCH
Confidence 555555555555555666653
No 211
>KOG4056|consensus
Probab=55.53 E-value=15 Score=25.69 Aligned_cols=19 Identities=5% Similarity=0.293 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 13 GAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r 31 (64)
++|+|-++|++.+-+.||-
T Consensus 11 ~vI~agiag~af~gYciYF 29 (143)
T KOG4056|consen 11 SVIAAGIAGLAFIGYCIYF 29 (143)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4445555666677788886
No 212
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=55.53 E-value=19 Score=22.87 Aligned_cols=20 Identities=30% Similarity=0.662 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy1892 16 VGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 16 vGlv~ailLIlfli~r~rKK 35 (64)
+.++++++++++++++.||+
T Consensus 7 i~i~~~v~~~~~ii~~vr~~ 26 (115)
T PF10066_consen 7 ILIIIAVLFLLFIIRLVRKR 26 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45566667777777776654
No 213
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=55.35 E-value=22 Score=22.61 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILVV 25 (64)
Q Consensus 9 g~IaG~VvGlv~ailLI 25 (64)
|-=.|++-|+++|++++
T Consensus 47 GRDiGIlYG~viGlli~ 63 (77)
T PRK01026 47 GRDIGILYGLVIGLLIV 63 (77)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33345555555554443
No 214
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=55.22 E-value=21 Score=22.41 Aligned_cols=7 Identities=29% Similarity=0.202 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy1892 11 IGGAVVG 17 (64)
Q Consensus 11 IaG~VvG 17 (64)
+.|+++|
T Consensus 31 ~~Gi~~~ 37 (95)
T TIGR02762 31 GIGILSG 37 (95)
T ss_pred HHHHHHh
Confidence 3333333
No 215
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=55.10 E-value=14 Score=28.78 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccccCCC
Q psy1892 14 AVVGLLCAILVVMFIVYRMRKKDEGSYALEEPK 46 (64)
Q Consensus 14 ~VvGlv~ailLIlfli~r~rKKdegsY~leE~K 46 (64)
++||++.-|.||+=-.|+-|| +.+||=.+-++
T Consensus 9 IIvG~IAIiaLLvhGlWtsRk-E~s~~F~~~p~ 40 (324)
T COG3115 9 IIVGAIAIIALLVHGLWTSRK-ERSSYFRDRPL 40 (324)
T ss_pred HHHHHHHHHHHHHhhhhhcch-hhccccccCcc
Confidence 466666666666666665322 33444444333
No 216
>PLN03112 cytochrome P450 family protein; Provisional
Probab=54.66 E-value=17 Score=27.15 Aligned_cols=25 Identities=16% Similarity=0.428 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhcCCC
Q psy1892 14 AVVGLLCAILVVMFIVYR-MRKKDEG 38 (64)
Q Consensus 14 ~VvGlv~ailLIlfli~r-~rKKdeg 38 (64)
-.++++++++|+..++|| +|++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (514)
T PLN03112 4 FLLSLLFSVLIFNVLIWRWLNASMRK 29 (514)
T ss_pred hHHHHHHHHHHHHHHHHHHccccccC
Confidence 357888898888888888 4444443
No 217
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=54.64 E-value=30 Score=24.15 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCCccccc
Q psy1892 25 VMFIVYRMRKKDEGSYALE 43 (64)
Q Consensus 25 Ilfli~r~rKKdegsY~le 43 (64)
+.++.+|..|+.|+.-|+|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~ 285 (285)
T PRK09497 267 MLLVYYRASKLLNKKVELE 285 (285)
T ss_pred HHHHHHHHHHHhhccccCC
Confidence 3334567778888877764
No 218
>PHA03283 envelope glycoprotein E; Provisional
Probab=54.62 E-value=23 Score=29.35 Aligned_cols=41 Identities=22% Similarity=0.466 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHH---HHhcCCCcccccCCCCCCCCCccccCCccc
Q psy1892 17 GLLCAILVVMFIVYR---MRKKDEGSYALEEPKRSPASNSYMKNSNRE 61 (64)
Q Consensus 17 Glv~ailLIlfli~r---~rKKdegsY~leE~K~~~~~~~y~k~~~~e 61 (64)
|.+++++++.+.+|. .|.+...-||+=.+ -.+.|+.-||+|
T Consensus 407 ~~~~~~~~~~l~vw~c~~~r~~~~~~y~ilnp----f~~vytslptn~ 450 (542)
T PHA03283 407 ICTCAALLVALVVWGCILYRRSNRKPYEVLNP----FETVYTSVPSND 450 (542)
T ss_pred HHHHHHHHHHHhhhheeeehhhcCCcccccCC----CccceeccCCCC
Confidence 333334444444443 45666778888554 234577766654
No 219
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=54.60 E-value=43 Score=20.77 Aligned_cols=12 Identities=33% Similarity=0.847 Sum_probs=6.5
Q ss_pred cCCCCCCCCCcc
Q psy1892 43 EEPKRSPASNSY 54 (64)
Q Consensus 43 eE~K~~~~~~~y 54 (64)
|++||.|+++.|
T Consensus 54 e~s~~aP~P~~~ 65 (67)
T PF11511_consen 54 ERSRQAPDPNTY 65 (67)
T ss_dssp TTCSS-SSSSSS
T ss_pred hhcccCCCCCcc
Confidence 456777766444
No 220
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=54.31 E-value=27 Score=24.06 Aligned_cols=14 Identities=21% Similarity=0.100 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 18 LLCAILVVMFIVYR 31 (64)
Q Consensus 18 lv~ailLIlfli~r 31 (64)
++++++=.+.++.|
T Consensus 96 L~LaamGA~~LLrR 109 (126)
T PF03229_consen 96 LTLAAMGAGALLRR 109 (126)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333445555
No 221
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.25 E-value=26 Score=23.23 Aligned_cols=7 Identities=57% Similarity=0.710 Sum_probs=3.2
Q ss_pred HHhcCCC
Q psy1892 32 MRKKDEG 38 (64)
Q Consensus 32 ~rKKdeg 38 (64)
+|.|.|+
T Consensus 74 KRGrPe~ 80 (111)
T TIGR03750 74 KRGKPEG 80 (111)
T ss_pred HcCCCch
Confidence 4444444
No 222
>KOG3540|consensus
Probab=54.23 E-value=20 Score=29.97 Aligned_cols=28 Identities=14% Similarity=0.339 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHHHHH--HHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCA--ILVVMFIVYR 31 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~a--ilLIlfli~r 31 (64)
.|.+++.|.|..|+.++. +++|-|++.|
T Consensus 543 ~~~s~~av~gllv~~~~i~tvivisl~mlr 572 (615)
T KOG3540|consen 543 VGRSASAVIGLLVSAVFIATVIVISLVMLR 572 (615)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467777777776665554 5566666664
No 223
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=54.20 E-value=7.5 Score=26.77 Aligned_cols=24 Identities=25% Similarity=0.667 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCA------ILVVMFIVY 30 (64)
Q Consensus 7 ~ag~IaG~VvGlv~a------ilLIlfli~ 30 (64)
+-|+++|..|.++|= +-|.+|+.|
T Consensus 91 ~LGvV~GG~i~vLcylylPC~~~l~v~~cW 120 (127)
T PF06040_consen 91 ILGVVAGGLIAVLCYLYLPCWVELVVLICW 120 (127)
T ss_pred hHHHHhccHHHHHHHHhccHHHhhhhheee
Confidence 345555555555432 445666665
No 224
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.04 E-value=33 Score=22.73 Aligned_cols=10 Identities=50% Similarity=0.889 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy1892 10 VIGGAVVGLL 19 (64)
Q Consensus 10 ~IaG~VvGlv 19 (64)
.++|.++|+.
T Consensus 31 ~~~gl~~g~~ 40 (111)
T TIGR03750 31 LAAGLVLGLL 40 (111)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 225
>COG4327 Predicted membrane protein [Function unknown]
Probab=53.82 E-value=28 Score=23.16 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhcCCCcccccCC
Q psy1892 22 ILVVMFIVYRMRKKDEGSYALEEP 45 (64)
Q Consensus 22 ilLIlfli~r~rKKdegsY~leE~ 45 (64)
++||+...|||-|=|++ +..+|.
T Consensus 66 Vvlifvya~r~nkld~k-~~ide~ 88 (101)
T COG4327 66 VVLIFVYAWRMNKLDDK-ANIDEG 88 (101)
T ss_pred HHHHHHHHHHHhHHHHH-hCcccc
Confidence 78888899998887764 677663
No 226
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=53.67 E-value=25 Score=22.52 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy1892 20 CAILVVMFIVYRMRKKD 36 (64)
Q Consensus 20 ~ailLIlfli~r~rKKd 36 (64)
+.++.+.+.++++|+++
T Consensus 40 ~~~~~i~~~i~~~R~~~ 56 (163)
T PF13858_consen 40 ITIIFIYFAIRRYRKKY 56 (163)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 33444555566666553
No 227
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=53.54 E-value=23 Score=26.77 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
|...-=+++|+++|+++|+.+++++=+
T Consensus 411 P~~~~~l~~g~~~Gl~lg~~~~~l~e~ 437 (498)
T TIGR03007 411 PNRPLLMLAGLLGGLGAGIGLAFLLSQ 437 (498)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444667777888777666655444
No 228
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=53.46 E-value=18 Score=23.63 Aligned_cols=23 Identities=4% Similarity=0.278 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfl 28 (64)
..||.+.+++.|+.+|+.+++++
T Consensus 72 ~~AG~~tn~fyGf~igL~i~~l~ 94 (96)
T PRK00965 72 YIAGIFTNMFYGFWIGLAILFLL 94 (96)
T ss_pred eehhhhhHHHHHHHHHHHHHHHh
Confidence 46788888888888876666554
No 229
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=53.43 E-value=28 Score=25.77 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=11.8
Q ss_pred HHHhcCCCcccccCC
Q psy1892 31 RMRKKDEGSYALEEP 45 (64)
Q Consensus 31 r~rKKdegsY~leE~ 45 (64)
+++||+...|.+|.|
T Consensus 427 ~~~~~~~~~~~~~~~ 441 (445)
T PRK10644 427 NYNRLHKNPYPLDAP 441 (445)
T ss_pred HHHhhcCCCCccCCC
Confidence 357788889999876
No 230
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=53.42 E-value=7.3 Score=30.54 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
+|++..++.+.|+++..+.|||.+|
T Consensus 202 ~Iv~~cvaG~aAliva~~cW~Rlqr 226 (341)
T PF06809_consen 202 LIVVCCVAGAAALIVAGYCWYRLQR 226 (341)
T ss_pred hhHHHHHHHHHHHHHhhheEEEecc
Confidence 4444444445678888888888544
No 231
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=53.37 E-value=21 Score=21.07 Aligned_cols=16 Identities=19% Similarity=0.222 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAI 22 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ai 22 (64)
+-+.|.|++|+.+++.
T Consensus 53 ~~r~iiGaiI~~i~~~ 68 (71)
T PF10779_consen 53 IWRTIIGAIITAIIYL 68 (71)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555554443
No 232
>KOG3030|consensus
Probab=52.98 E-value=25 Score=26.79 Aligned_cols=24 Identities=21% Similarity=0.563 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMR 33 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~r 33 (64)
+++|.++|+.+|+++-.+.+--++
T Consensus 243 V~aG~liG~~~A~~~~~~v~~~f~ 266 (317)
T KOG3030|consen 243 VLAGALIGAFVAYFLYRYVFPNFK 266 (317)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhh
Confidence 567777777777777666665544
No 233
>TIGR03024 arch_pef_cterm PEF-C-terminal archaeal protein sorting domain. This domain, distantly related to the PEP-Cterm domain described in model TIGR02595, is found in Methanosarcina mazei in four different proteins, as well as in other archaea such as Methanococcoides burtonii. Several proteins with this domain have their genes only a short distance from a distant homology of EpsH, a proposed integral membrane transpeptidase.
Probab=52.87 E-value=18 Score=18.68 Aligned_cols=7 Identities=0% Similarity=0.553 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy1892 24 VVMFIVY 30 (64)
Q Consensus 24 LIlfli~ 30 (64)
+.++.+.
T Consensus 15 l~i~~i~ 21 (26)
T TIGR03024 15 LAIIVIL 21 (26)
T ss_pred HHHHHHH
Confidence 3333333
No 234
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=52.73 E-value=13 Score=23.84 Aligned_cols=19 Identities=32% Similarity=0.425 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 13 GAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r 31 (64)
..+.|+++|++.+++.-+.
T Consensus 105 tT~~GL~vai~~~~~~~~l 123 (139)
T PF01618_consen 105 TTAYGLVVAIPALPFYNYL 123 (139)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456777776666444443
No 235
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=52.72 E-value=23 Score=23.22 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlf 27 (64)
-|...++.-|.++|++++.++.+.
T Consensus 73 AG~~tn~fyGf~igL~i~~lva~~ 96 (97)
T PF05440_consen 73 AGIFTNMFYGFIIGLVIAGLVALI 96 (97)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHh
Confidence 478889999999999997666553
No 236
>PF14219 DUF4328: Domain of unknown function (DUF4328)
Probab=52.72 E-value=23 Score=23.41 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
..++|++..+++.+..++|++|.+|-+.
T Consensus 23 ~~~~~~~~~~~~v~~~V~~l~Wl~rar~ 50 (171)
T PF14219_consen 23 VALLGLLALLLFVAAAVVFLVWLYRARA 50 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666777777777755543
No 237
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=52.60 E-value=26 Score=21.98 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q psy1892 12 GGAVVGLLCAI 22 (64)
Q Consensus 12 aG~VvGlv~ai 22 (64)
.|++-|+++|+
T Consensus 47 iGIlYG~viGl 57 (70)
T TIGR01149 47 IGILYGLVIGL 57 (70)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 238
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=52.39 E-value=39 Score=22.15 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRM 32 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~ 32 (64)
+.|+=+++|++|-+=....++||.
T Consensus 44 aai~MIf~Gi~lMlPAav~ivWR~ 67 (96)
T PF07214_consen 44 AAIAMIFVGIGLMLPAAVNIVWRV 67 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788888777778888984
No 239
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=52.17 E-value=4.4 Score=30.75 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhcC
Q psy1892 22 ILVVMFIVYRMRKKD 36 (64)
Q Consensus 22 ilLIlfli~r~rKKd 36 (64)
++++++++||+|++.
T Consensus 59 ~~l~~~f~~ryR~~~ 73 (315)
T PRK10525 59 ILMAVGFAWKYRASN 73 (315)
T ss_pred HHHHheeEEEEecCC
Confidence 334555667777653
No 240
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=51.58 E-value=25 Score=23.68 Aligned_cols=24 Identities=29% Similarity=0.682 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMR 33 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~r 33 (64)
-+.|..+.++..|+++.+++.|+.
T Consensus 20 qv~~~L~lVl~lI~~~aWLlkR~~ 43 (124)
T PRK11486 20 QVSGALIGIIALILAAAWLVKRLG 43 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356667899999999999999964
No 241
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=51.49 E-value=26 Score=28.00 Aligned_cols=19 Identities=16% Similarity=0.467 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy1892 17 GLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 17 Glv~ailLIlfli~r~rKK 35 (64)
+.+++++|++|++++++|+
T Consensus 446 ~~l~~l~l~~~v~rp~~~~ 464 (542)
T PRK06007 446 GALLILILIFFVLRPRLRP 464 (542)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4444444444444444443
No 242
>KOG3208|consensus
Probab=51.37 E-value=19 Score=26.92 Aligned_cols=17 Identities=6% Similarity=0.458 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1892 15 VVGLLCAILVVMFIVYR 31 (64)
Q Consensus 15 VvGlv~ailLIlfli~r 31 (64)
+.+.|.++|+|++++|.
T Consensus 213 ILa~Vis~C~llllfy~ 229 (231)
T KOG3208|consen 213 ILAAVISVCTLLLLFYW 229 (231)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555666666666653
No 243
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=51.11 E-value=24 Score=26.07 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVM 26 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIl 26 (64)
++.|+++|+++|+.+++++=+
T Consensus 400 l~~~~~~Gl~lg~~~~~l~e~ 420 (444)
T TIGR03017 400 LVLSIFLGMLLGIGFAFLAEL 420 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888777655433
No 244
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=51.04 E-value=22 Score=22.43 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=5.5
Q ss_pred HHHHHHHhcCCC
Q psy1892 27 FIVYRMRKKDEG 38 (64)
Q Consensus 27 fli~r~rKKdeg 38 (64)
+.+|-.|||+++
T Consensus 71 ~g~y~~~kk~~~ 82 (85)
T TIGR01495 71 LGYYYKKKNKDD 82 (85)
T ss_pred Hhhhhhcccccc
Confidence 444444555443
No 245
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=51.01 E-value=32 Score=25.20 Aligned_cols=25 Identities=20% Similarity=0.184 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 11 IGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
+..+++++|+++++++..-||.+++
T Consensus 40 ~~~~I~~~V~~~~~~~~~k~R~~~~ 64 (247)
T COG1622 40 LMLVIVLPVIVLLVYFAWKYRASNN 64 (247)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 3334555555544444333433333
No 246
>PRK08388 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=50.64 E-value=26 Score=22.91 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccC
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEE 44 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE 44 (64)
=++..+|+|+....+.+.+++.-+|++ |+-|.||
T Consensus 80 lvLTaIVI~~a~~A~~Lal~i~~yr~~--gt~d~d~ 113 (119)
T PRK08388 80 LVLTSIVIGVCVLSLAMALTINAYRHY--GTLDVTK 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCHHH
Confidence 356777888777766666555434443 4445444
No 247
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=50.09 E-value=38 Score=21.32 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMR 33 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~r 33 (64)
++-|+.+|.++.+.+..+++|..+
T Consensus 3 l~~~~~~G~~l~~~l~~l~~~~~~ 26 (205)
T PF07695_consen 3 LIWGFFFGILLFLALYSLFLYLQR 26 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888777777777655
No 248
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=50.08 E-value=33 Score=23.57 Aligned_cols=22 Identities=5% Similarity=0.307 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGL----LCAILVVMF 27 (64)
Q Consensus 6 ~~ag~IaG~VvGl----v~ailLIlf 27 (64)
+++|++.|++.|+ ++--++.-+
T Consensus 110 ~~Gg~l~Gli~~~~~Y~ls~~lI~~Y 135 (154)
T TIGR03546 110 VMGSFVVGLILLPPAFAISKVIIAKY 135 (154)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555 544444333
No 249
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=50.07 E-value=31 Score=24.34 Aligned_cols=18 Identities=33% Similarity=0.683 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVV 25 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLI 25 (64)
.+++.++.+|+++++++|
T Consensus 50 ~~~~~~~~~Gili~~~vi 67 (200)
T PF05473_consen 50 LFIICGILIGILITIFVI 67 (200)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356666666666664433
No 250
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=49.99 E-value=49 Score=23.08 Aligned_cols=9 Identities=11% Similarity=0.313 Sum_probs=4.0
Q ss_pred cccCCCCCC
Q psy1892 41 ALEEPKRSP 49 (64)
Q Consensus 41 ~leE~K~~~ 49 (64)
+.++.+|.|
T Consensus 381 ~~~~~~~~~ 389 (392)
T PRK10473 381 PVAAHEEIP 389 (392)
T ss_pred chhcCCCCC
Confidence 444444443
No 251
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=49.93 E-value=30 Score=25.26 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccccCCCC
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDE--GSYALEEPKR 47 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r~rKKde--gsY~leE~K~ 47 (64)
....+.++++.+++.+.++.+.-++++++.. +.|.-|.|..
T Consensus 229 ~~~~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~P~~ 271 (511)
T PF09972_consen 229 IILPILIVLGILLLLIFLIIWRKYGRDPKKGKPGEYYREPPED 271 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCceeeCCCCC
Confidence 3445555555555555555555555444443 7777777643
No 252
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=49.75 E-value=28 Score=28.74 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRMR 33 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~r 33 (64)
++|++.. |++..++.+++.+||.|
T Consensus 76 ~~~~~~~-g~~~~~~~~~~~~~~~~ 99 (663)
T PRK13876 76 GAIAASG-GFVAIAVAIAMSVWRAR 99 (663)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhh
Confidence 3443333 55554555566677633
No 253
>KOG3054|consensus
Probab=49.70 E-value=26 Score=27.09 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q psy1892 19 LCAILVVMFIVYR 31 (64)
Q Consensus 19 v~ailLIlfli~r 31 (64)
++-+++++|++||
T Consensus 13 llV~~i~l~l~~r 25 (299)
T KOG3054|consen 13 LLVAVILLFLWKR 25 (299)
T ss_pred HHHHHHHHHHHHh
Confidence 3334444555553
No 254
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=49.67 E-value=21 Score=25.02 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~ 30 (64)
|=|+|+|.++|+++.++..+
T Consensus 347 inGallG~liG~~~~~i~~l 366 (367)
T PF04286_consen 347 INGALLGGLIGLLQYLILQL 366 (367)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 56888888888877776543
No 255
>PRK12661 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=49.48 E-value=34 Score=23.32 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccC
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEE 44 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE 44 (64)
+=+..++|+|+-..++++.+.++-+| +-|+-|.||
T Consensus 100 ALvLTAIVIG~a~tA~~LaL~~r~y~--~~gT~d~~~ 134 (140)
T PRK12661 100 ALVLTAIVIGLATTAFILILAYRIYE--EYGTTDIRE 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCcHHH
Confidence 34667888888877776666554333 334445554
No 256
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=49.37 E-value=47 Score=25.28 Aligned_cols=39 Identities=31% Similarity=0.462 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHH-HHhcCCCcccccCCCCCC
Q psy1892 10 VIGGAVVGLLCAILVVMFI--VYR-MRKKDEGSYALEEPKRSP 49 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfl--i~r-~rKKdegsY~leE~K~~~ 49 (64)
+|-=+|+.++.-.++++.+ +|| -+|+|-| .-.+-+.|+.
T Consensus 189 vilpvvIaliVitl~vf~LvgLyr~C~k~dPg-~p~~g~~qpq 230 (259)
T PF07010_consen 189 VILPVVIALIVITLSVFTLVGLYRMCWKTDPG-TPENGPDQPQ 230 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCC
Confidence 4444444444443333333 344 3567877 4444455543
No 257
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=49.30 E-value=45 Score=18.66 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~ 30 (64)
.|++-|.+---+++.+.-.++=|
T Consensus 7 ~GiVLGlipvTl~GlfvaAylQY 29 (37)
T CHL00008 7 FGIVLGLIPITLAGLFVTAYLQY 29 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHH
Confidence 34444443333444444444444
No 258
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=49.20 E-value=50 Score=24.16 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
....++.|+++|.+.++++.--++..+++|+
T Consensus 256 fa~~l~~Gli~~~~~sl~i~p~l~~~~~~~~ 286 (289)
T PRK13022 256 FALALLIGIIVGTYSSIFVASPLLLWLGVRR 286 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455677777777777776665555444443
No 259
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=49.05 E-value=34 Score=22.52 Aligned_cols=16 Identities=13% Similarity=0.528 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1892 18 LLCAILVVMFIVYRMR 33 (64)
Q Consensus 18 lv~ailLIlfli~r~r 33 (64)
+.+.+.++-+.+|++|
T Consensus 96 i~l~vf~~~~~~ye~~ 111 (118)
T PF12676_consen 96 IALLVFAISYLYYEYR 111 (118)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3333444444555433
No 260
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=48.88 E-value=35 Score=21.39 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlf 27 (64)
.|+.=|+|+|+++-++++.+
T Consensus 47 iGIlYG~v~Glii~~~~~~l 66 (70)
T PF04210_consen 47 IGILYGLVIGLIIFIIYIVL 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665544443
No 261
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=48.82 E-value=48 Score=25.53 Aligned_cols=10 Identities=30% Similarity=0.806 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q psy1892 24 VVMFIVYRMR 33 (64)
Q Consensus 24 LIlfli~r~r 33 (64)
++.+++|..|
T Consensus 451 ~~~~~~y~~~ 460 (507)
T TIGR00910 451 ALPFIIYALH 460 (507)
T ss_pred HHHHHHHHHh
Confidence 3445555543
No 262
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=48.65 E-value=24 Score=21.70 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy1892 16 VGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 16 vGlv~ailLIlfli~r~rK 34 (64)
+|.++|.++...+..++.|
T Consensus 114 ~G~~lG~~l~~~~~~~~~r 132 (133)
T PF04892_consen 114 LGALLGYLLYRLIRKRWQR 132 (133)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3444444444444433333
No 263
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=48.65 E-value=12 Score=21.55 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q psy1892 19 LCAILVVMFIVYR 31 (64)
Q Consensus 19 v~ailLIlfli~r 31 (64)
+.++.|+..++||
T Consensus 19 lv~i~iva~~iYR 31 (43)
T PF08114_consen 19 LVGIGIVALFIYR 31 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 3345555566665
No 264
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=48.65 E-value=48 Score=19.89 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 11 IGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r~rK 34 (64)
++|..+.+++.+++.++-++.+++
T Consensus 9 ~~~f~~~~~l~~~~~~~~~~~l~~ 32 (181)
T PF12729_consen 9 ILGFGLIILLLLIVGIVGLYSLSQ 32 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455554443
No 265
>cd03384 PAP2_wunen PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the survival of PGCs and is essential in the migration process of these cells towards the somatic gonadal precursors.
Probab=48.51 E-value=16 Score=23.97 Aligned_cols=14 Identities=36% Similarity=0.755 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAIL 23 (64)
Q Consensus 10 ~IaG~VvGlv~ail 23 (64)
+|+|.++|++++.+
T Consensus 135 viaG~~lG~~~~~~ 148 (150)
T cd03384 135 VLAGALLGSVIALF 148 (150)
T ss_pred HHHHHHHHHHHHHH
Confidence 46666666666644
No 266
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=48.14 E-value=42 Score=23.18 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILV 24 (64)
Q Consensus 9 g~IaG~VvGlv~ailL 24 (64)
.+|.|++||+++|.++
T Consensus 5 ~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 5 IAIVALIVGIGIGYLV 20 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455556666555544
No 267
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=48.13 E-value=14 Score=29.18 Aligned_cols=26 Identities=8% Similarity=0.300 Sum_probs=14.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 3 IPLATSTVIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
++++--++|+|+||+ +++|++|.++.
T Consensus 27 ~~~~~~~~v~~~~~~------~~~~~~w~~~~ 52 (376)
T PRK13855 27 LSGSQKLIVAGLVLA------LSLSLIWLGGR 52 (376)
T ss_pred CccchhhhHHHHHHH------HHHHHHHhccC
Confidence 345555666665554 34566776553
No 268
>PRK14780 lipoprotein signal peptidase; Provisional
Probab=47.93 E-value=29 Score=26.32 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q psy1892 14 AVVGLLCAILVVM 26 (64)
Q Consensus 14 ~VvGlv~ailLIl 26 (64)
+++|+++.+++.+
T Consensus 207 I~~G~~llv~~~l 219 (263)
T PRK14780 207 IVVGVCVLVVILI 219 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 4555544443333
No 269
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=47.91 E-value=30 Score=20.95 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccc
Q psy1892 15 VVGLLCAILVVMFIVYRMRKKDEGSYA 41 (64)
Q Consensus 15 VvGlv~ailLIlfli~r~rKKdegsY~ 41 (64)
.|.++++.+.+..++|-.|. |+||
T Consensus 9 pvsi~l~~v~l~~flWavks---gQyD 32 (58)
T COG3197 9 PVSILLGAVGLGAFLWAVKS---GQYD 32 (58)
T ss_pred HHHHHHHHHHHHHHHHhccc---CCcc
Confidence 34445555555555664544 5554
No 270
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=47.69 E-value=47 Score=21.20 Aligned_cols=8 Identities=13% Similarity=0.355 Sum_probs=3.2
Q ss_pred HHHHHHhc
Q psy1892 28 IVYRMRKK 35 (64)
Q Consensus 28 li~r~rKK 35 (64)
++++++|+
T Consensus 113 ~~~~~~~~ 120 (135)
T PF04246_consen 113 ILRLFDRR 120 (135)
T ss_pred HHHHHHhh
Confidence 33334443
No 271
>cd03383 PAP2_diacylglycerolkinase PAP2_like proteins, diacylglycerol_kinase like sub-family. In some prokaryotes, PAP2_like phosphatase domains appear fused to E. coli DAGK-like trans-membrane diacylglycerol kinase domains. The cellular function of these architectures remains to be determined.
Probab=47.54 E-value=27 Score=22.24 Aligned_cols=14 Identities=43% Similarity=0.781 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAIL 23 (64)
Q Consensus 10 ~IaG~VvGlv~ail 23 (64)
+++|.++|++++.+
T Consensus 91 VlaG~~lG~~~~~~ 104 (109)
T cd03383 91 VVVGAILGALITLL 104 (109)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665543
No 272
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=47.50 E-value=40 Score=23.01 Aligned_cols=20 Identities=15% Similarity=0.561 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhcCCCcc
Q psy1892 21 AILVVMFIVYRMRKKDEGSY 40 (64)
Q Consensus 21 ailLIlfli~r~rKKdegsY 40 (64)
+++++++++.-+|+|-.-+|
T Consensus 27 l~~l~~~~~~Y~r~r~~tKy 46 (149)
T PF11694_consen 27 LLVLIFFFIKYLRNRLDTKY 46 (149)
T ss_pred HHHHHHHHHHHHHhcCcchh
Confidence 33333333333555544444
No 273
>PF13994 PgaD: PgaD-like protein
Probab=47.46 E-value=38 Score=22.16 Aligned_cols=26 Identities=15% Similarity=0.360 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r 31 (64)
....+...+.+-++++++||+...|.
T Consensus 60 ~~~~l~~y~~i~~~~a~~Li~Wa~yn 85 (138)
T PF13994_consen 60 SLNTLQIYLLIALVNAVILILWAKYN 85 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777777777665
No 274
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=47.34 E-value=27 Score=26.35 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1892 11 IGGAVVGLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r~rKKde 37 (64)
.|| .+..+...++=.+++|+.|||++
T Consensus 342 ~aG-~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 342 YAG-IGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred hhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence 456 33344444555677888776654
No 275
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=47.18 E-value=30 Score=22.29 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=14.7
Q ss_pred HHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCC
Q psy1892 16 VGLLCAILVV-MFIVYRMRKKDEGSYALEEPKRSP 49 (64)
Q Consensus 16 vGlv~ailLI-lfli~r~rKKdegsY~leE~K~~~ 49 (64)
+|+||..|.| .+.+|.|-+ =+.++ ..|++.+|
T Consensus 18 mg~VflfL~iLi~~~~~m~~-~v~r~-~pee~~~~ 50 (84)
T COG3630 18 MGFVFLFLSILIYAMRGMGA-VVRRF-VPEEVPAP 50 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhh-CCCCCCCc
Confidence 4566664433 344444544 44444 33444433
No 276
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=47.12 E-value=22 Score=27.84 Aligned_cols=29 Identities=7% Similarity=0.256 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
..=.+||++-|+++++.+.+..+++-||+
T Consensus 168 ~~LF~AGiiPGll~~~~~~~~~~~~a~~~ 196 (425)
T PRK15060 168 SKLFMAGIAPGIMMGATLMLTWWWQASRL 196 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeecC
Confidence 33457888999999988888877765543
No 277
>PF07314 DUF1461: Protein of unknown function (DUF1461); InterPro: IPR010178 This entry represents a family of highly hydrophobic, uncharacterised predicted integral membrane proteins found almost entirely in low-GC Gram-positive bacteria, although a member is also found in Aquifex aeolicus.
Probab=46.94 E-value=41 Score=22.91 Aligned_cols=26 Identities=19% Similarity=0.552 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1892 12 GGAVVGLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r~rKKde 37 (64)
.+..++.++.++.++..+++.+||+.
T Consensus 95 ~~~~i~~i~~i~~~~~~~~~~~~~~~ 120 (181)
T PF07314_consen 95 LAYIIRNICLIISIILFLYLLKKKRR 120 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556666666666666666555544
No 278
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=46.83 E-value=31 Score=23.30 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlf 27 (64)
..+++|+++++.++++|.++
T Consensus 75 k~v~~~~~~~i~~s~~l~~~ 94 (142)
T PF02936_consen 75 KKVFGGVFIFIGFSVLLFIW 94 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544443
No 279
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=46.81 E-value=30 Score=26.17 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVM 26 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIl 26 (64)
+.+|+++|+++|+.+++++=+
T Consensus 417 l~~g~~~Gl~lg~~~~~l~e~ 437 (498)
T TIGR03007 417 MLAGLLGGLGAGIGLAFLLSQ 437 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666665554433
No 280
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=46.75 E-value=29 Score=26.75 Aligned_cols=21 Identities=14% Similarity=0.545 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r 31 (64)
.|+++..++.+ ++|++++++|
T Consensus 24 ~v~~~~l~l~L-l~ll~yl~~~ 44 (406)
T PF04906_consen 24 SVAAACLALSL-LFLLIYLICR 44 (406)
T ss_pred HHHHHHHHHHH-HHHHHHHHHH
Confidence 34444333332 3333344444
No 281
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=46.64 E-value=26 Score=21.32 Aligned_cols=16 Identities=38% Similarity=0.824 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1892 16 VGLLCAILVVMFIVYR 31 (64)
Q Consensus 16 vGlv~ailLIlfli~r 31 (64)
.|+.|=++.++|++||
T Consensus 75 ~~~~~f~~~v~yI~~r 90 (92)
T PF03908_consen 75 FAFLFFLLVVLYILWR 90 (92)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4566667777888875
No 282
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=46.55 E-value=19 Score=21.69 Aligned_cols=8 Identities=25% Similarity=0.472 Sum_probs=3.2
Q ss_pred HHhcCCCc
Q psy1892 32 MRKKDEGS 39 (64)
Q Consensus 32 ~rKKdegs 39 (64)
+|++.++.
T Consensus 30 yr~~~K~~ 37 (60)
T COG4736 30 YRPGKKGE 37 (60)
T ss_pred hcccchhh
Confidence 34443343
No 283
>PF09490 CbtA: Probable cobalt transporter subunit (CbtA)
Probab=46.50 E-value=27 Score=25.23 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlf 27 (64)
.-+..|+++|++.|++...+--++
T Consensus 4 ~ll~rgllAGllAGlla~~~a~~~ 27 (227)
T PF09490_consen 4 RLLLRGLLAGLLAGLLAFAFARVF 27 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777776554444
No 284
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=46.19 E-value=39 Score=20.82 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlfl 28 (64)
++.+|+.+-.+.|+.+|.++-+.+
T Consensus 32 kL~SGv~~~~~~G~aiG~~~AlvL 55 (67)
T PRK13275 32 KLESGVIATGIIGFAIGFLLALLL 55 (67)
T ss_pred hhhHHhhhhhHHHHHHHHHHHHHH
Confidence 344444444555555554444333
No 285
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=46.09 E-value=17 Score=27.60 Aligned_cols=27 Identities=30% Similarity=0.593 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
.++|++-|+++++.+++..+++-||++
T Consensus 171 f~agiiPgll~~~~~~~~~~~~~~~~~ 197 (416)
T PF06808_consen 171 FIAGIIPGLLLALGLMIYVYFIARKPG 197 (416)
T ss_pred HHHHHHHHHHHHHHHHHhHhheeeccc
Confidence 467888899999888888877755443
No 286
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=45.80 E-value=7.5 Score=27.77 Aligned_cols=10 Identities=20% Similarity=0.730 Sum_probs=4.9
Q ss_pred HHHHHHHHhc
Q psy1892 26 MFIVYRMRKK 35 (64)
Q Consensus 26 lfli~r~rKK 35 (64)
++.++|+|+|
T Consensus 51 ~~~~~r~r~~ 60 (226)
T TIGR01433 51 LFFAWKYRAT 60 (226)
T ss_pred heeeEEEecc
Confidence 3345555554
No 287
>KOG4433|consensus
Probab=45.77 E-value=35 Score=28.27 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
-++-|.+++++.|+.+--+++.++..+-+||
T Consensus 43 L~lla~l~aa~l~l~Ll~ll~yli~~cC~Rr 73 (526)
T KOG4433|consen 43 LLLLAALAAACLGLSLLFLLFYLICRCCCRR 73 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455666666666555444433333333333
No 288
>PRK01844 hypothetical protein; Provisional
Probab=45.68 E-value=56 Score=20.45 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHh
Q psy1892 14 AVVGLLCAILVVMFIVYR-MRK 34 (64)
Q Consensus 14 ~VvGlv~ailLIlfli~r-~rK 34 (64)
++++++.|+++=+|+-.+ ++|
T Consensus 10 ~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665 444
No 289
>PRK10847 hypothetical protein; Provisional
Probab=45.60 E-value=61 Score=22.50 Aligned_cols=8 Identities=13% Similarity=0.538 Sum_probs=3.8
Q ss_pred HHHHHHhc
Q psy1892 28 IVYRMRKK 35 (64)
Q Consensus 28 li~r~rKK 35 (64)
.+||.|++
T Consensus 206 ~~~r~~~~ 213 (219)
T PRK10847 206 EIWRHKRA 213 (219)
T ss_pred HHHHHHhh
Confidence 45554443
No 290
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=45.37 E-value=25 Score=23.35 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=16.0
Q ss_pred cchhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhc
Q psy1892 3 IPLATSTVIGGAVVGLL-----CAILVVMFIVYRMRKK 35 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv-----~ailLIlfli~r~rKK 35 (64)
||-+-.|.-.|.+.|++ |.++-++-++.|.|+|
T Consensus 62 RPrveigl~VgTlFgLiPFL~Gc~~~~v~~l~lrwr~r 99 (100)
T PF10954_consen 62 RPRVEIGLGVGTLFGLIPFLAGCLILGVIALILRWRHR 99 (100)
T ss_pred CCceEEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444555555555543 2244444455555544
No 291
>KOG4608|consensus
Probab=45.20 E-value=6.8 Score=29.85 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEG 38 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlfli~r~rKKdeg 38 (64)
|..+|+|.|++.|..++.++.+|....+++=.|+
T Consensus 183 g~aa~vilG~~lG~tv~~~l~l~q~a~~k~vnE~ 216 (270)
T KOG4608|consen 183 GLAAGVILGALLGTTVGGLLMLFQKASGKTVNER 216 (270)
T ss_pred HHhhcceeehhhcchHHHHHHHHHHHhCCcHHHH
Confidence 3455666666667666777777766655544444
No 292
>TIGR02507 MtrF tetrahydromethanopterin S-methyltransferase, F subunit. coenzyme M methyltransferase in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=44.91 E-value=39 Score=20.78 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=15.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIV 29 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli 29 (64)
.++.+|+.+-.+.|+++|.++-++++
T Consensus 31 ~kL~SGv~~~~~~G~~iG~~~Al~lV 56 (65)
T TIGR02507 31 IGLASGVQTTTITGLAYGFLFAVLLV 56 (65)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 34556666666666666655555444
No 293
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=44.82 E-value=56 Score=18.27 Aligned_cols=10 Identities=40% Similarity=0.647 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q psy1892 12 GGAVVGLLCA 21 (64)
Q Consensus 12 aG~VvGlv~a 21 (64)
.|+|.|++..
T Consensus 7 ~GiVLGlipi 16 (37)
T PRK00665 7 CGIVLGLIPV 16 (37)
T ss_pred hhHHHHhHHH
Confidence 4555555444
No 294
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=44.61 E-value=60 Score=22.15 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAI 22 (64)
Q Consensus 9 g~IaG~VvGlv~ai 22 (64)
.++.+.++.+++..
T Consensus 97 ~ivvSTllvl~vtg 110 (141)
T PRK04125 97 VIIVATILLLACTG 110 (141)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 295
>PRK00573 lspA signal peptidase II; Provisional
Probab=44.57 E-value=42 Score=23.98 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 13 GAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r~rKK 35 (64)
.+++|+++.++.++.-+++-+||
T Consensus 159 aItiGvilLil~~i~~~f~~~k~ 181 (184)
T PRK00573 159 CITFGFIGLFFCFLIQFFKEFKH 181 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 46677666555555555544443
No 296
>PRK14789 lipoprotein signal peptidase; Provisional
Probab=44.56 E-value=39 Score=23.96 Aligned_cols=21 Identities=5% Similarity=0.154 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q psy1892 18 LLCAILVVMFIVYRMRKKDEG 38 (64)
Q Consensus 18 lv~ailLIlfli~r~rKKdeg 38 (64)
+++|++++++.++++++|+.+
T Consensus 135 I~iGvilLl~~~~~~~~~~~~ 155 (191)
T PRK14789 135 ITIGVAALAFHIIFIGEEPAP 155 (191)
T ss_pred HHHHHHHHHHHHHHhccCCCC
Confidence 445555555555544444433
No 297
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=44.52 E-value=34 Score=17.66 Aligned_cols=14 Identities=21% Similarity=0.505 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 17 GLLCAILVVMFIVY 30 (64)
Q Consensus 17 Glv~ailLIlfli~ 30 (64)
|+++++.|+.++++
T Consensus 3 ~~~l~~~L~~YL~~ 16 (26)
T TIGR02115 3 LLVLAVGLFIYLFY 16 (26)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555544
No 298
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=44.39 E-value=43 Score=19.81 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHh
Q psy1892 19 LCAILVVMFIVYRMRK 34 (64)
Q Consensus 19 v~ailLIlfli~r~rK 34 (64)
++...+++.++||..+
T Consensus 39 v~lts~~~~~~y~l~~ 54 (66)
T PF11755_consen 39 VVLTSVCMAIVYRLDE 54 (66)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3335566778887733
No 299
>KOG1025|consensus
Probab=44.38 E-value=35 Score=30.66 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYRM 32 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r~ 32 (64)
...+||+|+++++++....++++-|||
T Consensus 630 ~~~~viG~~Ll~~~~~~~~~~~~~~r~ 656 (1177)
T KOG1025|consen 630 TAIAVIGGLLLAFFVFLGFSLYMCRRM 656 (1177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 345567777777777777777777663
No 300
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=43.97 E-value=71 Score=22.05 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
+....++.|+++|+...+++---++..++||
T Consensus 159 ~Fa~~l~iGvi~~~~ss~~ia~~l~~~l~~~ 189 (189)
T PF02355_consen 159 GFALTLIIGVIIGTYSSLFIARPLLYWLVKK 189 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445667777777777777766666666665
No 301
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=43.65 E-value=70 Score=20.85 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCA 21 (64)
Q Consensus 8 ag~IaG~VvGlv~a 21 (64)
.|.+.|+++|+++.
T Consensus 56 ~~~~iG~~~a~~~~ 69 (141)
T PF06081_consen 56 LGTLIGALLALLFF 69 (141)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555554443
No 302
>KOG2493|consensus
Probab=43.44 E-value=93 Score=25.78 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCC
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKR 47 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE~K~ 47 (64)
.+.++.-..+|++++++..+|+--++|+|-+.+=+.+|.+.
T Consensus 232 ~~~~~is~~~g~i~a~i~~f~v~p~~~~ki~~~k~~~~~~~ 272 (512)
T KOG2493|consen 232 WATILISVGLGVIAAFIVYFFVRPFMRRKINRGKETDEAPP 272 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhcccccccccCCC
Confidence 44667777888888887777776668888765445545433
No 303
>PRK07118 ferredoxin; Validated
Probab=43.42 E-value=35 Score=24.99 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlf 27 (64)
.++.+++.-.++|+++|++|.+.
T Consensus 3 ~i~~~~~~~~~~g~~~g~~l~~a 25 (280)
T PRK07118 3 MILFAVLSLGALGLVFGILLAFA 25 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888776654
No 304
>cd03390 PAP2_containing_1_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both diacylglycerol pyrophosphate phosphatase activity as well as phosphatidate (PA) phosphatase activity, they may have a more generic housekeeping role in lipid metabolism.
Probab=43.34 E-value=43 Score=22.43 Aligned_cols=23 Identities=9% Similarity=0.209 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIV 29 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli 29 (64)
...+...+.+++.+.+++++.++
T Consensus 14 ~~~~l~~~~~~ip~~~~~~~~~~ 36 (193)
T cd03390 14 PTWLLVIISVGIPLLVIILISLF 36 (193)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555554444444
No 305
>PF15345 TMEM51: Transmembrane protein 51
Probab=43.30 E-value=30 Score=25.82 Aligned_cols=22 Identities=18% Similarity=0.461 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q psy1892 17 GLLCAILVVMFIVYRMRKKDEG 38 (64)
Q Consensus 17 Glv~ailLIlfli~r~rKKdeg 38 (64)
|+.+.+|-|.+-|+..||+.++
T Consensus 68 Gv~LLLLSICL~IR~KRr~rq~ 89 (233)
T PF15345_consen 68 GVALLLLSICLSIRDKRRRRQG 89 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 5555556666666666665444
No 306
>PRK00523 hypothetical protein; Provisional
Probab=43.15 E-value=62 Score=20.24 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHh
Q psy1892 13 GAVVGLLCAILVVMFIVYR-MRK 34 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r-~rK 34 (64)
=++++++.|+++=+|+-.+ ++|
T Consensus 10 l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 10 LGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555666655 444
No 307
>COG4063 MtrA Tetrahydromethanopterin S-methyltransferase, subunit A [Coenzyme metabolism]
Probab=43.04 E-value=21 Score=26.74 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=20.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 3 IPLATSTVIGGAVVGLLCAILVVMFIV 29 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ailLIlfli 29 (64)
+.|..+|-|-|+.+|+.+.++|+.+++
T Consensus 211 ~aG~~sGki~G~~iGl~~~l~~l~lll 237 (238)
T COG4063 211 HAGYYSGKIQGIMIGLTVTLSLLGLLL 237 (238)
T ss_pred hhhhhcchhhhHHHHHHHHHHHHHhhc
Confidence 346778888999999988877666553
No 308
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=42.99 E-value=10 Score=29.34 Aligned_cols=19 Identities=11% Similarity=0.427 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 13 GAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r 31 (64)
=.++|.++-+++|.|+|+|
T Consensus 281 il~IG~vl~i~~Ig~~ifK 299 (305)
T PF04639_consen 281 ILIIGGVLLIVFIGYFIFK 299 (305)
T ss_pred HHHHHHHHHHHHhhheeeE
Confidence 3566777777777777776
No 309
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=42.88 E-value=68 Score=20.71 Aligned_cols=29 Identities=17% Similarity=0.516 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~rKKde 37 (64)
-++++.++|++++++.=++..+-.|+..+
T Consensus 120 ~~~G~~i~~~v~~~i~Y~l~~~~~~~~r~ 148 (154)
T PF09835_consen 120 FLLGSLILGIVLGIISYFLVYFLVRKYRK 148 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777776655544444666543
No 310
>PF14828 Amnionless: Amnionless
Probab=42.86 E-value=8.4 Score=30.22 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIV 29 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli 29 (64)
..++.++|+|+|.++.++|++.++
T Consensus 335 ~~~~~v~~~vl~~Lllv~ll~~~~ 358 (437)
T PF14828_consen 335 VSFGTVVGIVLGCLLLVALLFGVI 358 (437)
T ss_pred cccceeeeehHHHHHHHHHHHHhh
Confidence 334445556665555444443333
No 311
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=42.80 E-value=29 Score=22.60 Aligned_cols=16 Identities=19% Similarity=0.019 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAIL 23 (64)
Q Consensus 8 ag~IaG~VvGlv~ail 23 (64)
--+|||.-+|++++.+
T Consensus 17 yyiiA~gga~llL~~v 32 (87)
T PF11980_consen 17 YYIIAMGGALLLLVAV 32 (87)
T ss_pred eHHHhhccHHHHHHHH
Confidence 3466766666666633
No 312
>PRK14780 lipoprotein signal peptidase; Provisional
Probab=42.73 E-value=72 Score=24.20 Aligned_cols=13 Identities=15% Similarity=0.480 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy1892 18 LLCAILVVMFIVY 30 (64)
Q Consensus 18 lv~ailLIlfli~ 30 (64)
+++|++++++...
T Consensus 207 I~~G~~llv~~~l 219 (263)
T PRK14780 207 IVVGVCVLVVILI 219 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 3444433333333
No 313
>KOG4491|consensus
Probab=42.68 E-value=21 Score=27.73 Aligned_cols=15 Identities=40% Similarity=0.793 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAI 22 (64)
Q Consensus 8 ag~IaG~VvGlv~ai 22 (64)
.|.++|.+||.++.|
T Consensus 65 SGa~~G~lV~filtI 79 (323)
T KOG4491|consen 65 SGALGGLLVGFILTI 79 (323)
T ss_pred ccchhHHHHHHHHHH
Confidence 578899999988664
No 314
>COG1288 Predicted membrane protein [Function unknown]
Probab=42.59 E-value=23 Score=29.03 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccc
Q psy1892 15 VVGLLCAILVVMFIVYRMRKKDEGSYAL 42 (64)
Q Consensus 15 VvGlv~ailLIlfli~r~rKKdegsY~l 42 (64)
|++.+++++-+++...|.||-.+.||--
T Consensus 224 v~~~~~~i~y~~~Ya~KvkkdP~~S~v~ 251 (481)
T COG1288 224 VVFTLISIIYVYWYASKVKKDPTLSLVY 251 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 4444444444444444455555666543
No 315
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=42.46 E-value=36 Score=28.25 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILV----VMFIVYR 31 (64)
Q Consensus 8 ag~IaG~VvGlv~ailL----Ilfli~r 31 (64)
+|.++.+++|+++.+++ +.|.+.|
T Consensus 91 ~g~~v~~~i~ll~~il~P~vg~~fCcCR 118 (806)
T PF05478_consen 91 WGFLVCAVIGLLFIILMPLVGLCFCCCR 118 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 57888888888888655 4444444
No 316
>PF13886 DUF4203: Domain of unknown function (DUF4203)
Probab=42.46 E-value=61 Score=22.07 Aligned_cols=11 Identities=18% Similarity=0.607 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCA 21 (64)
Q Consensus 11 IaG~VvGlv~a 21 (64)
++|++.|++++
T Consensus 59 v~g~~~G~i~g 69 (210)
T PF13886_consen 59 VAGVLGGIILG 69 (210)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 317
>PF03967 PRCH: Photosynthetic reaction centre, H-chain N-terminal region; InterPro: IPR015810 The photosynthetic apparatus in non-oxygenic bacteria consists of light-harvesting (LH) protein-pigment complexes LH1 and LH2, which use carotenoid and bacteriochlorophyll as primary donors []. LH1 acts as the energy collection hub, temporarily storing it before its transfer to the photosynthetic reaction centre (RC) []. Electrons are transferred from the primary donor via an intermediate acceptor (bacteriopheophytin) to the primary acceptor (quinine Qa), and finally to the secondary acceptor (quinone Qb), resulting in the formation of ubiquinol QbH2. RC uses the excitation energy to shuffle electrons across the membrane, transferring them via ubiquinol to the cytochrome bc1 complex in order to establish a proton gradient across the membrane, which is used by ATP synthetase to form ATP [, , ]. The core complex is anchored in the cell membrane, consisting of one unit of RC surrounded by LH1; in some species there may be additional subunits []. RC consists of three subunits: L (light), M (medium), and H (heavy). Subunits L and M provide the scaffolding for the chromophore, while subunit H contains a cytoplasmic domain []. In Rhodopseudomonas viridis, there is also a non-membranous tetrahaem cytochrome (4Hcyt) subunit on the periplasmic surface. This entry represents the N-terminal domain of the photosynthetic reaction centre H subunit, which includes the transmembrane domain and part of the cytoplasmic domain [].; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0030077 plasma membrane light-harvesting complex; PDB: 1RZZ_H 1PST_H 2J8D_H 3DUQ_H 1FNP_H 1KBY_H 1E14_H 2HG3_H 1UMX_H 1YST_H ....
Probab=42.38 E-value=59 Score=22.54 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHH-HHhcCCCcccccCC
Q psy1892 19 LCAILVVMFIVYR-MRKKDEGSYALEEP 45 (64)
Q Consensus 19 v~ailLIlfli~r-~rKKdegsY~leE~ 45 (64)
+|-+++..+++|. +-.|.|| |-||..
T Consensus 19 aFwiFFagLi~YLrrEdkREG-YPLe~d 45 (136)
T PF03967_consen 19 AFWIFFAGLIYYLRREDKREG-YPLESD 45 (136)
T ss_dssp HHHHHHHHHHHHHHHHTTSSS-TSSB-T
T ss_pred HHHHHHHHHHHHHhccccccC-CCcccC
Confidence 3446666666666 5677888 888765
No 318
>PF01098 FTSW_RODA_SPOVE: Cell cycle protein; InterPro: IPR001182 A number of prokaryotic integral membrane proteins involved in cell cycle processes have been found to be structurally related [, ]. These proteins include, the Escherichia coli and related bacteria cell division protein ftsW and the rod shape-determining protein rodA (or mrdB), the Bacillus subtilis stage V sporulation protein E (spoVE), the B. subtilis hypothetical proteins ywcF and ylaO and the Cyanophora paradoxa cyanelle ftsW homolog.; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=42.36 E-value=50 Score=24.22 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILVV 25 (64)
Q Consensus 9 g~IaG~VvGlv~ailLI 25 (64)
|.++++++-++++++++
T Consensus 266 G~ig~i~v~~l~~~l~~ 282 (358)
T PF01098_consen 266 GWIGGILVLLLFLLLIF 282 (358)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55555555555444333
No 319
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=42.32 E-value=51 Score=28.44 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYRM 32 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r~ 32 (64)
+-.+++|+++|+++|.++..++-|..
T Consensus 209 L~~i~~GiliG~vvG~l~~~Ll~~l~ 234 (810)
T TIGR00844 209 LWECIFGSILGCIIGYCGRKAIRFAE 234 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778777776665555443
No 320
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=42.32 E-value=50 Score=24.87 Aligned_cols=17 Identities=12% Similarity=0.260 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVM 26 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIl 26 (64)
+|.|+++|+++++.+++
T Consensus 298 lil~~~lG~~lg~~~vL 314 (325)
T PRK15471 298 LVLAVLLGGMIGAGIVL 314 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666677666654444
No 321
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=42.09 E-value=35 Score=21.37 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlf 27 (64)
=.|+.=|+|+|+++.+.+..+
T Consensus 46 DiGIlYG~viGlli~~~~~~l 66 (70)
T TIGR01149 46 DIGILYGLVIGLILFLIYILL 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777776554443
No 322
>cd03395 PAP2_like_4 PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=42.07 E-value=45 Score=21.94 Aligned_cols=16 Identities=38% Similarity=0.864 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILV 24 (64)
Q Consensus 9 g~IaG~VvGlv~ailL 24 (64)
=+++|.++|+.++.+.
T Consensus 155 DVl~G~~lG~~~~~~~ 170 (177)
T cd03395 155 DVIAGALIGIISGLLF 170 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677778887776544
No 323
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=41.96 E-value=25 Score=24.72 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCAIL 23 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ail 23 (64)
|.++|+++|+++|++.+++
T Consensus 52 G~i~gvl~g~l~g~i~~~l 70 (175)
T PF01864_consen 52 GFIGGVLAGTLVGIIQGLL 70 (175)
T ss_pred eeeHHHHHHHHHHHHHHHH
Confidence 5566666776666655543
No 324
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=41.77 E-value=42 Score=23.08 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
..|++.+..++++++++.+.....|.||
T Consensus 19 ~~~i~~At~~~i~~~~~~v~~~~~~~r~ 46 (176)
T PF04279_consen 19 TYGIFVATAVLIVATLAQVAYSWIRRRK 46 (176)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3567777777777777777776665543
No 325
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=41.75 E-value=36 Score=23.03 Aligned_cols=17 Identities=18% Similarity=0.575 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1892 15 VVGLLCAILVVMFIVYR 31 (64)
Q Consensus 15 VvGlv~ailLIlfli~r 31 (64)
++|++++++.+++.+||
T Consensus 158 ~~g~i~~~~a~~la~~r 174 (177)
T PF07798_consen 158 LVGVIFGCVALVLAILR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35556655555555555
No 326
>TIGR00851 mtlA PTS system, mannitol-specific IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several putative PTS permeases of unknown specificities.The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIC domain of the mannitol PTS transporters.
Probab=41.72 E-value=49 Score=24.96 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfl 28 (64)
.+.+.|++++++++.++..++
T Consensus 306 ~~~li~~~ia~vv~fvlt~~~ 326 (338)
T TIGR00851 306 LGVLAGVLVAAAVSFVVSAII 326 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665555444
No 327
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=41.62 E-value=38 Score=26.61 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVM 26 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIl 26 (64)
.++..|+++|+++++++++
T Consensus 403 ~~~~~Gi~vGv~~s~~~~~ 421 (563)
T TIGR00815 403 TSIEIGLLVGVALSAAFLL 421 (563)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555566666655544433
No 328
>COG2456 Uncharacterized conserved protein [Function unknown]
Probab=41.39 E-value=42 Score=22.96 Aligned_cols=21 Identities=10% Similarity=0.830 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy1892 15 VVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 15 VvGlv~ailLIlfli~r~rKK 35 (64)
++|+++++.++...+.|.|++
T Consensus 13 ~igii~~l~~m~~~~~r~k~~ 33 (121)
T COG2456 13 YIGIIFILFLMIYVFFRLKRR 33 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 678888888888888886663
No 329
>PRK13747 putative mercury resistance protein; Provisional
Probab=41.35 E-value=49 Score=21.17 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCA 21 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~a 21 (64)
+++++.||..+|..++
T Consensus 34 iLa~lLAGTa~Gafl~ 49 (78)
T PRK13747 34 ILAAVLAGTTAGAFLG 49 (78)
T ss_pred HHHHHHccchHHHHHH
Confidence 4566666665554443
No 330
>PF01569 PAP2: PAP2 superfamily This family includes the following Prosite family; InterPro: IPR000326 This entry represents type 2 phosphatidic acid phosphatase (PAP2; 3.1.3.4 from EC) enzymes, such as phosphatidylglycerophosphatase B 3.1.3.27 from EC from Escherichia coli. PAP2 enzymes have a core structure consisting of a 5-helical bundle, where the beginning of the third helix binds the cofactor []. PAP2 enzymes catalyse the dephosphorylation of phosphatidate, yielding diacylglycerol and inorganic phosphate []. In eukaryotic cells, PAP activity has a central role in the synthesis of phospholipids and triacylglycerol through its product diacylglycerol, and it also generates and/or degrades lipid-signalling molecules that are related to phosphatidate. Other related enzymes have a similar core structure, including haloperoxidases such as bromoperoxidase (contains one core bundle, but forms a dimer), chloroperoxidases (contains two core bundles arranged as in other family dimers), bacitracin transport permease from Bacillus licheniformis, glucose-6-phosphatase from rat. The vanadium-dependent haloperoxidases exclusively catalyse the oxidation of halides, and act as histidine phosphatases, using histidine for the nucleophilic attack in the first step of the reaction []. Amino acid residues involved in binding phosphate/vanadate are conserved between the two families, supporting a proposal that vanadium passes through a tetrahedral intermediate during the reaction mechanism.; GO: 0003824 catalytic activity, 0016020 membrane; PDB: 1QI9_B 1IW8_A 1EOI_A 1D2T_A 1QHB_D 1UP8_C 2IPB_A 1VNS_A 1VNF_A 1VNE_A ....
Probab=41.15 E-value=17 Score=21.54 Aligned_cols=11 Identities=45% Similarity=0.896 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLC 20 (64)
Q Consensus 10 ~IaG~VvGlv~ 20 (64)
+++|+++|.++
T Consensus 106 vi~G~~lg~~~ 116 (129)
T PF01569_consen 106 VIAGILLGILI 116 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 331
>PRK01741 cell division protein ZipA; Provisional
Probab=41.13 E-value=22 Score=27.65 Aligned_cols=18 Identities=17% Similarity=0.475 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 14 AVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 14 ~VvGlv~ailLIlfli~r 31 (64)
+++|+++-|.||.+-+|-
T Consensus 8 iILg~lal~~Lv~hgiWs 25 (332)
T PRK01741 8 IILGILALVALVAHGIWS 25 (332)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 467777788888888885
No 332
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=41.08 E-value=67 Score=24.74 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHH-HHhcCCCcccccCC
Q psy1892 12 GGAVVGLLCAIL-VVMFIVYR-MRKKDEGSYALEEP 45 (64)
Q Consensus 12 aG~VvGlv~ail-LIlfli~r-~rKKdegsY~leE~ 45 (64)
.+.+.+++|.++ .+.--.|. ++|||+..-|.||.
T Consensus 368 ~sll~al~f~~~v~~~~~~W~~~~~~~~dy~d~de~ 403 (406)
T PF04906_consen 368 FSLLAALLFSILVCVVSHAWKYFRRRDRDYEDVDEE 403 (406)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhcCCcccccccccC
Confidence 344444444422 22233365 77777665577775
No 333
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=41.06 E-value=31 Score=26.78 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfl 28 (64)
.+.++++|.+++.++..++
T Consensus 316 ~iiailig~vvtavl~~~~ 334 (359)
T PRK10478 316 YIAAVAVGAVVTAVCVNVL 334 (359)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566666655444443
No 334
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=41.06 E-value=21 Score=24.94 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r 31 (64)
+|.|+.+|++... .++.+||
T Consensus 105 ~il~il~~i~is~--~~~~~yr 124 (139)
T PHA03099 105 GIVLVLVGIIITC--CLLSVYR 124 (139)
T ss_pred HHHHHHHHHHHHH--HHHhhhe
Confidence 4445555554443 3444555
No 335
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=40.98 E-value=33 Score=24.27 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy1892 17 GLLCAILVVMFIVYR 31 (64)
Q Consensus 17 Glv~ailLIlfli~r 31 (64)
||++|+++...++++
T Consensus 55 GVil~~~~~~~~l~~ 69 (165)
T PF11286_consen 55 GVILGLLLTSALLRQ 69 (165)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 336
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=40.91 E-value=54 Score=26.35 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=15.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
|...--++.|+++|+++|+.+++++-+
T Consensus 428 P~~~~~l~~~~~~gl~lg~~~a~l~e~ 454 (754)
T TIGR01005 428 PKKGPIVGLAAVLGLLLGAIFALLREL 454 (754)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444556666777776655554433
No 337
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=40.89 E-value=42 Score=25.09 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfl 28 (64)
-+|-=|+++|||-||-+||+
T Consensus 130 mLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 130 MLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777777775
No 338
>COG4603 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=40.50 E-value=76 Score=24.52 Aligned_cols=19 Identities=11% Similarity=0.253 Sum_probs=11.7
Q ss_pred HhcCCCcccccCCCCCCCC
Q psy1892 33 RKKDEGSYALEEPKRSPAS 51 (64)
Q Consensus 33 rKKdegsY~leE~K~~~~~ 51 (64)
..||..+....+|++-|+.
T Consensus 166 ~~~~p~~~~~~~T~~i~~~ 184 (356)
T COG4603 166 PLRDPAGTNFPQTRPIPDA 184 (356)
T ss_pred cccCCCcCCCccCccCchh
Confidence 3456666566777766544
No 339
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=40.49 E-value=45 Score=26.73 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYAL 42 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~rKKdegsY~l 42 (64)
.+.|..+|++..++++++.++++++|..=.+++
T Consensus 180 ~~~~~~~~~v~~~~~v~~~~r~R~~r~~~gl~~ 212 (394)
T COG4214 180 AILGWILGLVALAAIVFAGLRGRRRRIRHGLEV 212 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 456777787777777877777766655444444
No 340
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=40.27 E-value=39 Score=25.56 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy1892 22 ILVVMFIVYRMRKKDEG 38 (64)
Q Consensus 22 ilLIlfli~r~rKKdeg 38 (64)
++++-+++|++|||+++
T Consensus 479 ~~~~~~~~~~~~~~~~~ 495 (496)
T PRK15238 479 FSILAWIIYQNYEKKMA 495 (496)
T ss_pred HHHHHHHHHHhhchhcc
Confidence 35556788887777654
No 341
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=40.14 E-value=87 Score=20.72 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
+-++++.+|+|.+++.++-..=++++|+
T Consensus 62 ilvil~s~v~G~Li~~~~~~~Ri~~lrr 89 (98)
T COG5416 62 ILVILGAAVVGALIAMFAGIARILQLRR 89 (98)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456667777777777776666666554
No 342
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=39.95 E-value=42 Score=19.66 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVV 25 (64)
Q Consensus 10 ~IaG~VvGlv~ailLI 25 (64)
+|+|++..+++.+.|+
T Consensus 34 Ii~gii~~~~fV~~Lv 49 (56)
T PF11174_consen 34 IIVGIILAALFVAGLV 49 (56)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 343
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=39.86 E-value=48 Score=26.81 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfl 28 (64)
.+|.++|.+|++|+..+..+++
T Consensus 67 aagFfvaflvslVL~~l~~f~l 88 (429)
T PF12297_consen 67 AAGFFVAFLVSLVLTWLCFFLL 88 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777664444333
No 344
>PHA03286 envelope glycoprotein E; Provisional
Probab=39.84 E-value=66 Score=26.52 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=3.9
Q ss_pred HHhcCCCc
Q psy1892 32 MRKKDEGS 39 (64)
Q Consensus 32 ~rKKdegs 39 (64)
.|+|..|-
T Consensus 419 ~~~r~~~~ 426 (492)
T PHA03286 419 RRHRTNGY 426 (492)
T ss_pred hhhhcccc
Confidence 44555553
No 345
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=39.77 E-value=52 Score=24.68 Aligned_cols=6 Identities=17% Similarity=0.457 Sum_probs=3.6
Q ss_pred HHhcCC
Q psy1892 32 MRKKDE 37 (64)
Q Consensus 32 ~rKKde 37 (64)
+|+||+
T Consensus 395 fk~~~~ 400 (400)
T PF03825_consen 395 FKPKHN 400 (400)
T ss_pred ccCCCC
Confidence 666654
No 346
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=39.69 E-value=53 Score=18.50 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhcCCCcccc
Q psy1892 21 AILVVMFIVYRMRKKDEGSYAL 42 (64)
Q Consensus 21 ailLIlfli~r~rKKdegsY~l 42 (64)
.++.+..++|=++++.+..||.
T Consensus 20 ~~~Figiv~wa~~p~~k~~f~e 41 (48)
T cd01324 20 ALFFLGVVVWAFRPGRKKAFDE 41 (48)
T ss_pred HHHHHHHHHHHhCCCcchhHHH
Confidence 3444555566667766665543
No 347
>PHA03049 IMV membrane protein; Provisional
Probab=39.64 E-value=69 Score=20.00 Aligned_cols=11 Identities=27% Similarity=0.748 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhcC
Q psy1892 24 VVMFIVYRMRKKD 36 (64)
Q Consensus 24 LIlfli~r~rKKd 36 (64)
||++-+| +||.
T Consensus 17 lIvYgiY--nkk~ 27 (68)
T PHA03049 17 LIVYGIY--NKKT 27 (68)
T ss_pred HHHHHHH--hccc
Confidence 3444444 4443
No 348
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=39.56 E-value=46 Score=20.30 Aligned_cols=25 Identities=4% Similarity=-0.027 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
+..++++++|+.-+++.+|=.|+.|
T Consensus 34 ~~v~~v~~~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 34 LAVAIVFAVVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555554444455555555554
No 349
>PF02430 AMA-1: Apical membrane antigen 1; InterPro: IPR003298 A novel antigen of Plasmodium falciparum has been cloned that contains a hydrophobic domain typical of an integral membrane protein. The antigen is designated apical membrane antigen 1 (AMA-1) by virtue of appearing to be located in the apical complex []. AMA-1 appears to be transported to the merozoite surface close to the time of schizont rupture. The 66kDa merozoite surface antigen (PK66) of Plasmodium knowlesi, a simian malaria, possesses vaccine-related properties believed to originate from a receptor-like role in parasite invasion of erythrocytes []. The sequence of PK66 is conserved throughout plasmodium, and shows high similarity to P. falciparum AMA-1. Following schizont rupture, the distribution of PK66 changes in a coordinate manner associated with merozoite invasion. Prior to rupture, the protein is concentrated at the apical end, following which it distributes itself entirely across the surface of the free merozoite. Immunofluorescence studies suggest that, during invasion, PK66 is excluded from the erythrocyte at, and behind, the invasion interface []. ; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2Y8R_D 2X2Z_A 2Y8T_A 2Y8S_D 1HN6_A 2Z8V_B 2Z8W_A 1Z40_E 2Q8B_A 2Q8A_A ....
Probab=39.53 E-value=9.8 Score=30.96 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r 31 (64)
.+|+++.+|+++.+|+++++..|
T Consensus 431 ~~~~~~~~~~~~~~l~~~~~~k~ 453 (471)
T PF02430_consen 431 VIIISIATGAVLLALAIYWYYKR 453 (471)
T ss_dssp -----------------------
T ss_pred ehhhHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666665543
No 350
>COG0671 PgpB Membrane-associated phospholipid phosphatase [Lipid metabolism]
Probab=39.36 E-value=43 Score=20.64 Aligned_cols=14 Identities=64% Similarity=1.087 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAIL 23 (64)
Q Consensus 10 ~IaG~VvGlv~ail 23 (64)
+++|.++|.+++.+
T Consensus 193 Vi~G~~~g~~~~~~ 206 (232)
T COG0671 193 VIGGALLGALAALL 206 (232)
T ss_pred HHhhHHHHHHHHHH
Confidence 34455555444433
No 351
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=39.24 E-value=9.5 Score=29.18 Aligned_cols=27 Identities=30% Similarity=0.251 Sum_probs=17.7
Q ss_pred cchhHHHHHHH--HHHHHHHHHHHHHHHH
Q psy1892 3 IPLATSTVIGG--AVVGLLCAILVVMFIV 29 (64)
Q Consensus 3 ~~~~~ag~IaG--~VvGlv~ailLIlfli 29 (64)
.+|+||||-.. +|||-|++.|.-.|+-
T Consensus 365 stgaIaGIsvavvvvVgglvGfLcWwf~c 393 (397)
T PF03302_consen 365 STGAIAGISVAVVVVVGGLVGFLCWWFIC 393 (397)
T ss_pred cccceeeeeehhHHHHHHHHHHHhhheee
Confidence 35677776544 4677777777766665
No 352
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=39.21 E-value=33 Score=20.14 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCA 21 (64)
Q Consensus 11 IaG~VvGlv~a 21 (64)
|+|.+++.++.
T Consensus 16 igGLi~A~vlf 26 (50)
T PF02038_consen 16 IGGLIFAGVLF 26 (50)
T ss_dssp HHHHHHHHHHH
T ss_pred ccchHHHHHHH
Confidence 34444433333
No 353
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=39.12 E-value=13 Score=25.94 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlfli~r 31 (64)
|+..+-=||-.|.-++.+|+|+|.||-
T Consensus 55 g~ysawgagsfiatliillviffviy~ 81 (150)
T PF06084_consen 55 GIYSAWGAGSFIATLIILLVIFFVIYS 81 (150)
T ss_pred hhhhhcccchHHHHHHHHHHHhheeEe
Confidence 344455567777777777777887773
No 354
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=39.05 E-value=57 Score=23.92 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCA 21 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~a 21 (64)
.+..|+++|++++++++
T Consensus 167 ~~~~g~~~G~~~a~~~~ 183 (306)
T PF03239_consen 167 SILLGAILGIAAAVVLG 183 (306)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555544
No 355
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=39.02 E-value=89 Score=26.92 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVV 25 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLI 25 (64)
+...++.|+++|....+++-
T Consensus 801 fai~li~Gli~gt~sSifvA 820 (855)
T PRK14726 801 FTFAMLFGVAVGTFSSIYIA 820 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556677777766665543
No 356
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=39.01 E-value=49 Score=22.87 Aligned_cols=22 Identities=9% Similarity=0.058 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlf 27 (64)
++.+++.=.++|+++|++|.+-
T Consensus 4 ~~~~~~~~~~lg~~~g~~l~~a 25 (191)
T PRK05113 4 IWIAVAALSLLALVFGAILGFA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777778888888776654
No 357
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=38.92 E-value=48 Score=22.03 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q psy1892 15 VVGLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 15 VvGlv~ailLIlfli~r~rKKde 37 (64)
|+-+|-..+-|++++++.-||++
T Consensus 74 ~~S~~tS~isIL~LV~~~~KKe~ 96 (100)
T PF06363_consen 74 VVSAVTSFISILLLVTKIFKKEK 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 45556666667777777444444
No 358
>PRK09546 zntB zinc transporter; Reviewed
Probab=38.91 E-value=37 Score=24.51 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy1892 18 LLCAILVVMFIV 29 (64)
Q Consensus 18 lv~ailLIlfli 29 (64)
+.+.+.++++++
T Consensus 306 im~~i~~~~~~~ 317 (324)
T PRK09546 306 LLVVLIGGVAWW 317 (324)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 359
>COG4854 Predicted membrane protein [Function unknown]
Probab=38.76 E-value=38 Score=23.35 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=13.6
Q ss_pred CcchhHHHHHHHHHHHH
Q psy1892 2 TIPLATSTVIGGAVVGL 18 (64)
Q Consensus 2 ~~~~~~ag~IaG~VvGl 18 (64)
..++++..+++|+++|-
T Consensus 8 ~~~l~~ivm~~GA~~g~ 24 (126)
T COG4854 8 TKILFAIVMAVGAAVGY 24 (126)
T ss_pred HHHHHHHHHHHHHHHhe
Confidence 45788888999999884
No 360
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=38.67 E-value=41 Score=21.88 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcC
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYR--MRKKD 36 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r--~rKKd 36 (64)
|+||--||.+.|.++.++++----++ ++|+|
T Consensus 19 iiA~gga~llL~~v~l~vvL~C~r~~~a~kk~~ 51 (87)
T PF11980_consen 19 IIAMGGALLLLVAVCLGVVLYCHRFHWAAKKRS 51 (87)
T ss_pred HHhhccHHHHHHHHHHHHHHhhhhhccccccCc
Confidence 67777889999999987776665555 45554
No 361
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=38.51 E-value=56 Score=20.79 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 14 AVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 14 ~VvGlv~ailLIlfli~r 31 (64)
..+|+++++++++.++|+
T Consensus 47 ~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 47 VIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457888888888888887
No 362
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=38.46 E-value=35 Score=26.83 Aligned_cols=19 Identities=5% Similarity=0.467 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 12 GGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~ 30 (64)
-++++.+++=|+||++|||
T Consensus 13 ~aiiiSv~LHvlLi~lLi~ 31 (387)
T PRK09510 13 RAIIISVVLHIILFALLIW 31 (387)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666
No 363
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=38.42 E-value=50 Score=16.73 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 17 GLLCAILVVMFIVY 30 (64)
Q Consensus 17 Glv~ailLIlfli~ 30 (64)
|.++++.+..++++
T Consensus 4 ~~~v~~~L~~YL~~ 17 (25)
T PF09604_consen 4 GGIVAVALFVYLFY 17 (25)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 364
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=38.31 E-value=56 Score=20.33 Aligned_cols=14 Identities=29% Similarity=0.280 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAI 22 (64)
Q Consensus 9 g~IaG~VvGlv~ai 22 (64)
|.+.|++-|++...
T Consensus 101 G~~~G~~~~~li~~ 114 (146)
T PF02674_consen 101 GALLGLAKGLLILS 114 (146)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 365
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=38.26 E-value=39 Score=24.55 Aligned_cols=8 Identities=25% Similarity=0.476 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q psy1892 15 VVGLLCAI 22 (64)
Q Consensus 15 VvGlv~ai 22 (64)
.+|.++|+
T Consensus 19 ~~Ga~~G~ 26 (267)
T PRK09430 19 FFGALLGL 26 (267)
T ss_pred HHHHHHHH
Confidence 33444443
No 366
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=38.25 E-value=50 Score=24.32 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r 31 (64)
+|+-+|+.++.|.|+-+|+-.+
T Consensus 153 ~IG~~VlA~~VA~L~~~F~RR~ 174 (215)
T PF05084_consen 153 LIGAVVLAVSVAMLTWFFLRRT 174 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4666666666676666655443
No 367
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=38.23 E-value=57 Score=24.09 Aligned_cols=34 Identities=12% Similarity=0.317 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCC
Q psy1892 12 GGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEP 45 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r~rKKdegsY~leE~ 45 (64)
...++-+++.++-++.+.+-.|++.+.+||+.+.
T Consensus 192 ~~~~l~i~~~i~s~~l~~~nkk~e~~~~f~v~~R 225 (328)
T PF02117_consen 192 VCFVLTIFNLIVSIFLMYYNKKKEKKTRFDVNSR 225 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHH
Confidence 3444444444444444443344445677887653
No 368
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=38.10 E-value=38 Score=26.57 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVM 26 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIl 26 (64)
.|+++|+++|+++++++++
T Consensus 459 ~GA~ag~i~G~~~~~~~~~ 477 (549)
T TIGR02711 459 RGAMIGGWLGLITAVVLMI 477 (549)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655554
No 369
>cd03391 PAP2_containing_2_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_2. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to eukaryota, lacks functional characterization and may act as a membrane-associated phosphatidic acid phosphatase.
Probab=38.07 E-value=26 Score=23.21 Aligned_cols=14 Identities=50% Similarity=0.819 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAIL 23 (64)
Q Consensus 10 ~IaG~VvGlv~ail 23 (64)
+++|.++|++++.+
T Consensus 144 VlaG~~lG~~~~~~ 157 (159)
T cd03391 144 VLAGAFLGYLEALL 157 (159)
T ss_pred HHHHHHHHHHHHHh
Confidence 56777777777654
No 370
>PF09594 DUF2029: Protein of unknown function (DUF2029); InterPro: IPR018584 This is a putative transmembrane protein from prokaryotes. It is likely to be conserved between Mycobacterium species []. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=38.03 E-value=66 Score=20.98 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy1892 16 VGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 16 vGlv~ailLIlfli~r~rK 34 (64)
+.++++++++++++||.|+
T Consensus 201 ~~~~~~l~~~~~~~~~~~~ 219 (241)
T PF09594_consen 201 VLVLALLALALVLLWRWRR 219 (241)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3344446666666666553
No 371
>PLN03150 hypothetical protein; Provisional
Probab=37.98 E-value=5.8 Score=31.59 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEG 38 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r~rKKdeg 38 (64)
...+.+.++++|++++++++++..+.++||...
T Consensus 541 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~r~~ 573 (623)
T PLN03150 541 LSVGAKIGIAFGVSVAFLFLVICAMCWWKRRQN 573 (623)
T ss_pred CCCceEEEEEhHHHHHHHHHHHHHhhheeehhh
Confidence 345677888899998888888888889988864
No 372
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=37.84 E-value=7.1 Score=23.02 Aligned_cols=19 Identities=32% Similarity=0.737 Sum_probs=9.8
Q ss_pred HHHHHHH-HHHHHHHHHHHH
Q psy1892 15 VVGLLCA-ILVVMFIVYRMR 33 (64)
Q Consensus 15 VvGlv~a-ilLIlfli~r~r 33 (64)
++|++++ +.+++|++|+.+
T Consensus 66 ~~g~~~~~~~~~~~~~y~~~ 85 (87)
T PF03083_consen 66 VFGLVLSIIYLVVYYIYPSK 85 (87)
T ss_pred HHHHHHHHHHHhheEEeCCC
Confidence 4555555 445555555433
No 373
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=37.72 E-value=91 Score=21.51 Aligned_cols=17 Identities=12% Similarity=-0.015 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1892 15 VVGLLCAILVVMFIVYR 31 (64)
Q Consensus 15 VvGlv~ailLIlfli~r 31 (64)
+.+++.+..|+==..+|
T Consensus 97 ~LaamGA~~LLrR~cRr 113 (126)
T PF03229_consen 97 TLAAMGAGALLRRCCRR 113 (126)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 374
>PHA03296 envelope glycoprotein H; Provisional
Probab=37.68 E-value=62 Score=28.13 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCCccc
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFI---VYRMRKKDEGSYA 41 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfl---i~r~rKKdegsY~ 41 (64)
+....|.+.++|.++|++++.+- ||++..-...+|.
T Consensus 769 vs~iyII~s~IGaLaglfil~~~~r~iykf~~~~a~~~~ 807 (814)
T PHA03296 769 FDKAYIIGIAVGALAGLFALAFAARAIYKFCLGRANQFR 807 (814)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeE
Confidence 46688999999999998888874 4554443333443
No 375
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=37.68 E-value=44 Score=20.00 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCA 21 (64)
Q Consensus 9 g~IaG~VvGlv~a 21 (64)
|.+.|+++|+++.
T Consensus 42 Gt~iG~~~~~~~~ 54 (128)
T PF13515_consen 42 GTLIGVVLGLLLL 54 (128)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555544443
No 376
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=37.64 E-value=58 Score=20.53 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy1892 14 AVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 14 ~VvGlv~ailLIlfli~r~rK 34 (64)
..+|+++.+++++.++|+.++
T Consensus 51 ~~~G~~~~~~~~~~~~~~~~~ 71 (188)
T PF00033_consen 51 FSLGIVFLALFLLRILWRLFS 71 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 467888888888999998666
No 377
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=37.54 E-value=1e+02 Score=19.20 Aligned_cols=6 Identities=17% Similarity=-0.036 Sum_probs=2.8
Q ss_pred HHHHHH
Q psy1892 11 IGGAVV 16 (64)
Q Consensus 11 IaG~Vv 16 (64)
+.|+.+
T Consensus 15 vlGMg~ 20 (82)
T PRK02919 15 FLGMGF 20 (82)
T ss_pred HHHHHH
Confidence 445444
No 378
>KOG3516|consensus
Probab=37.47 E-value=33 Score=31.19 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCC
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPA 50 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE~K~~~~ 50 (64)
.++|+|+..-+++.++.+.-+.=|++.+|+|.|..+|+|.++.
T Consensus 1239 ~a~iggvi~~v~f~~~c~~~i~~~~~~~~k~~~~~~e~~~~e~ 1281 (1306)
T KOG3516|consen 1239 SADIGGVIMFVLFDILCHRGIADYNTTEDKGVRKENDDSDNEL 1281 (1306)
T ss_pred hhhhcchhhhhhHHHHHHhhhhhhhccccccccccCCCccccC
Confidence 4556666666666666666666668889999999999887554
No 379
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=37.30 E-value=1.1e+02 Score=19.91 Aligned_cols=29 Identities=17% Similarity=0.063 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy1892 11 IGGAVVGLLCAILVVMFIVYRMRKKDEGS 39 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r~rKKdegs 39 (64)
|-|++.-+++++-|+-+.+-|.++|..+.
T Consensus 6 il~llLll~l~asl~~wr~~~rq~k~~~~ 34 (107)
T PF15330_consen 6 ILALLLLLSLAASLLAWRMKQRQKKAGQY 34 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 44555666777888888888888886554
No 380
>COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism]
Probab=37.29 E-value=41 Score=25.91 Aligned_cols=7 Identities=43% Similarity=0.714 Sum_probs=3.6
Q ss_pred HHHHHHH
Q psy1892 14 AVVGLLC 20 (64)
Q Consensus 14 ~VvGlv~ 20 (64)
+|.|++.
T Consensus 266 iv~Glii 272 (304)
T COG4059 266 IVAGLII 272 (304)
T ss_pred hHHHHHH
Confidence 5555544
No 381
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=37.25 E-value=5.2 Score=27.23 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 18 LLCAILVVMFIVYR 31 (64)
Q Consensus 18 lv~ailLIlfli~r 31 (64)
|++|||||+=.||.
T Consensus 34 VILgiLLliGCWYc 47 (118)
T PF14991_consen 34 VILGILLLIGCWYC 47 (118)
T ss_dssp --------------
T ss_pred HHHHHHHHHhheee
Confidence 44556666556663
No 382
>PRK10440 iron-enterobactin transporter permease; Provisional
Probab=37.04 E-value=40 Score=25.49 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy1892 13 GAVVGLLCAILVV 25 (64)
Q Consensus 13 G~VvGlv~ailLI 25 (64)
|+|+.++-+.+++
T Consensus 308 GivtaliG~p~fl 320 (330)
T PRK10440 308 GVVTVSLGGIYLI 320 (330)
T ss_pred HHHHHHHHHHHHH
Confidence 4444443333333
No 383
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=37.02 E-value=64 Score=23.52 Aligned_cols=25 Identities=16% Similarity=0.418 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1892 13 GAVVGLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r~rKKde 37 (64)
+=++.++..++-+.++++++|||++
T Consensus 249 ~Q~~sl~~i~~g~~~~~~~~~~~~~ 273 (278)
T TIGR00544 249 GQILSLLMIAGILIIMLLAYKLSDK 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344433333333334455555544
No 384
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=36.99 E-value=82 Score=23.77 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=24.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 2 TIPLATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 2 ~~~~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
.+|..++..||++.||-+.|+++--.++.
T Consensus 174 ~~p~~LG~~iA~Alv~T~~Gi~~ay~~~~ 202 (266)
T COG1291 174 DDPAELGALIAAALVGTLYGIFLAYGLFG 202 (266)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999887666554
No 385
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=36.99 E-value=59 Score=25.11 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r 31 (64)
-+|++.+++||+.+++-++-.
T Consensus 48 ~vGI~fav~f~i~lvltLvnL 68 (296)
T PF10361_consen 48 SVGIAFAVLFAIALVLTLVNL 68 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 468889999998888888874
No 386
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=36.98 E-value=43 Score=27.40 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=19.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1892 3 IPLATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEG 38 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ailLIlfli~r~rKKdeg 38 (64)
..|...|+++|++++.+...++-.+++-..|+++|.
T Consensus 309 pkg~~~~~i~gV~~aa~VSFvvssliLk~~k~~~~~ 344 (472)
T COG2213 309 PKGAYLGVIAGVLVAALVSFVVSSLILKTSKTESED 344 (472)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhcccccHh
Confidence 345556667776666666544444444434433343
No 387
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=36.77 E-value=4.6 Score=30.54 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEG 38 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~rKKdeg 38 (64)
+|+|++.|+++.+||.++.++..|-|.+.
T Consensus 215 iv~g~~~G~~~L~ll~~lv~~~vr~krk~ 243 (278)
T PF06697_consen 215 IVVGVVGGVVLLGLLSLLVAMLVRYKRKK 243 (278)
T ss_pred EEEEehHHHHHHHHHHHHHHhhhhhhHHH
Confidence 36677888887777776766664444444
No 388
>KOG1219|consensus
Probab=36.71 E-value=32 Score=34.35 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCC
Q psy1892 12 GGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPK 46 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r~rKKdegsY~leE~K 46 (64)
.|++|-+.+-++++.++|+++||+....|.-++++
T Consensus 3996 i~I~V~l~~ifilvvlf~~crKk~~rkky~~~~~~ 4030 (4289)
T KOG1219|consen 3996 IIIIVLLALIFILVVLFWKCRKKNSRKKYGAHCPV 4030 (4289)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhccCCcccccCCh
Confidence 34444444444444455666777777888888874
No 389
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=36.69 E-value=76 Score=19.88 Aligned_cols=14 Identities=0% Similarity=-0.074 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAI 22 (64)
Q Consensus 9 g~IaG~VvGlv~ai 22 (64)
|++.|.+|+.++..
T Consensus 53 GIli~f~i~f~~~~ 66 (103)
T PF06422_consen 53 GILIAFWIFFIVLT 66 (103)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 390
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=36.63 E-value=57 Score=21.78 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVVM 26 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIl 26 (64)
+.+++.-.++|+++|++|.+
T Consensus 3 ~~~~~~~~~~g~~~~~~l~~ 22 (165)
T TIGR01944 3 IAAVAALSALGLALGAILGY 22 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777765544
No 391
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=36.55 E-value=51 Score=23.24 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCc
Q psy1892 17 GLLCAILVVMFIVYRMRKKDEGS 39 (64)
Q Consensus 17 Glv~ailLIlfli~r~rKKdegs 39 (64)
|.+++..+-++++.|+.||+++.
T Consensus 109 ~~~lg~~l~fl~~r~ysRkl~~~ 131 (150)
T COG3086 109 GAFLGLALGFLLARRYSRKLAKR 131 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 44444555556677788887763
No 392
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=36.40 E-value=81 Score=21.51 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhcC
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR-MRKKD 36 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r-~rKKd 36 (64)
+++.++++-++..+..-+.+.+ .|+++
T Consensus 94 Il~~ivvSTllvl~vtg~v~~~l~r~~~ 121 (141)
T PRK04125 94 IIGVIIVATILLLACTGLFSQFILGKTE 121 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555555555555555544 44433
No 393
>KOG4580|consensus
Probab=36.39 E-value=78 Score=21.42 Aligned_cols=16 Identities=25% Similarity=0.820 Sum_probs=11.5
Q ss_pred HHHHHH---HHhcCCCccc
Q psy1892 26 MFIVYR---MRKKDEGSYA 41 (64)
Q Consensus 26 lfli~r---~rKKdegsY~ 41 (64)
.+..|| +|+|+.|.||
T Consensus 65 ~lYlwRa~~I~~R~~~pyD 83 (112)
T KOG4580|consen 65 FLYLWRASMIRQRSPGPYD 83 (112)
T ss_pred HHHHHHHHHHHhcCCCCCC
Confidence 345567 7888888886
No 394
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=36.24 E-value=98 Score=20.49 Aligned_cols=12 Identities=17% Similarity=0.003 Sum_probs=7.9
Q ss_pred cchhHHHHHHHH
Q psy1892 3 IPLATSTVIGGA 14 (64)
Q Consensus 3 ~~~~~ag~IaG~ 14 (64)
+.+.++|+.+|+
T Consensus 9 ~~~~i~GVcaGl 20 (121)
T TIGR02978 9 QNGKIAGVCAGL 20 (121)
T ss_pred CCCEehhHHHHH
Confidence 456677777775
No 395
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=36.06 E-value=75 Score=23.09 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 11 IGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r~rK 34 (64)
+..+++++++++++.+++..++++
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~i~~ 206 (542)
T PRK11086 183 YWSILFGALVGLIGTVILVRVLKR 206 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556666655554
No 396
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.03 E-value=26 Score=28.88 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlf 27 (64)
+|+++|+++++++++++|
T Consensus 13 ~~~ivvv~i~~ilv~if~ 30 (548)
T COG2268 13 LIAIVVVVILVILVLIFF 30 (548)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555555
No 397
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=36.00 E-value=50 Score=20.18 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cCCCccccc
Q psy1892 11 IGGAVVGLLCAILVVMFIVYRMRK--KDEGSYALE 43 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r~rK--KdegsY~le 43 (64)
+.|..+|+....-.+.+=+.-.|| -|..|-||.
T Consensus 24 ~IGtalGvaisAgFLaLKicmIrkhlfD~dssdlr 58 (61)
T PF14986_consen 24 IIGTALGVAISAGFLALKICMIRKHLFDNDSSDLR 58 (61)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHhhccCchhhhc
Confidence 456666666554333333322232 356665553
No 398
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=35.88 E-value=71 Score=22.03 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r 31 (64)
|.-+++|+++|+++-+++.++
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~ 23 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKK 23 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666655555443
No 399
>PRK09543 znuB high-affinity zinc transporter membrane component; Reviewed
Probab=35.40 E-value=69 Score=22.89 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r 31 (64)
-+.++|+++++.|+++=.+..++|
T Consensus 7 ~a~~~~~l~~~~~~~lG~~vvlr~ 30 (261)
T PRK09543 7 PGWLAGIMLACAAGPLGSFVVWRR 30 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356777788877777666655544
No 400
>PRK14781 lipoprotein signal peptidase; Provisional
Probab=35.39 E-value=41 Score=22.74 Aligned_cols=14 Identities=7% Similarity=0.273 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 18 LLCAILVVMFIVYR 31 (64)
Q Consensus 18 lv~ailLIlfli~r 31 (64)
+++|++++++..++
T Consensus 131 I~~Gv~lll~~~~~ 144 (153)
T PRK14781 131 VTTGVALLVLGMLR 144 (153)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444443
No 401
>COG1108 ZnuB ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
Probab=35.37 E-value=68 Score=23.80 Aligned_cols=26 Identities=19% Similarity=0.643 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYRM 32 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r~ 32 (64)
.-+.++++.+|++|+.+=.+..++||
T Consensus 15 ~~alla~~li~~~~~~lG~flvlRr~ 40 (274)
T COG1108 15 QNALLASLLIGIACGLLGTFLVLRRM 40 (274)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34677888888888877666555543
No 402
>PTZ00229 variable surface protein Vir30; Provisional
Probab=35.28 E-value=14 Score=28.30 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r 31 (64)
++-.|+|-++|+.+++|+.|+
T Consensus 244 ~~~~~~gs~~gl~~~f~~~YK 264 (317)
T PTZ00229 244 ISTAVTGTIVGLIPLVGILYK 264 (317)
T ss_pred eeehhhhhhhhHHhHHhhhhc
Confidence 355667777777888888775
No 403
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=35.25 E-value=69 Score=23.61 Aligned_cols=17 Identities=29% Similarity=0.757 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1892 15 VVGLLCAILVVMFIVYR 31 (64)
Q Consensus 15 VvGlv~ailLIlfli~r 31 (64)
++|+++|+|+-+++.-|
T Consensus 57 i~gi~~g~l~am~vl~r 73 (224)
T PF13829_consen 57 IIGILLGLLAAMIVLSR 73 (224)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445555555543
No 404
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=35.16 E-value=57 Score=25.98 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
..+.-+..|+++-+.+|+++.|..||
T Consensus 21 ~~L~Qv~~aL~~VlalI~~~aWLlRR 46 (379)
T PRK12430 21 EKFLQIMSSLFEIILLILILSWILKK 46 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666666666555
No 405
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=35.09 E-value=70 Score=23.63 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy1892 18 LLCAILVVMFIVYRMRK 34 (64)
Q Consensus 18 lv~ailLIlfli~r~rK 34 (64)
++++.+.+.-.+|+.||
T Consensus 232 ~~~~~~~~~~~~~~~~~ 248 (249)
T PRK15348 232 LLLGVGILIGYFCLRRR 248 (249)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44444444444444443
No 406
>TIGR01726 HEQRo_perm_3TM amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family. This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.
Probab=35.05 E-value=57 Score=19.63 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCA 21 (64)
Q Consensus 8 ag~IaG~VvGlv~a 21 (64)
.+++.|.++|+++|
T Consensus 18 ~a~~~~~~~G~~l~ 31 (99)
T TIGR01726 18 LSILLGLVLGLLLA 31 (99)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555555
No 407
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.87 E-value=67 Score=24.50 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVG 17 (64)
Q Consensus 5 ~~~ag~IaG~VvG 17 (64)
|.++|+++|...|
T Consensus 31 ~~~g~l~ggl~~g 43 (281)
T COG4395 31 GMLGGLAGGLLMG 43 (281)
T ss_pred hhhhHHHHHHHHh
Confidence 3445555555555
No 408
>PF02116 STE2: Fungal pheromone mating factor STE2 GPCR; InterPro: IPR000366 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures.; GO: 0004932 mating-type factor pheromone receptor activity, 0016020 membrane; PDB: 2K9P_A.
Probab=34.77 E-value=33 Score=25.63 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
.+..+++=|+=+|..+..+++++++-+.|||
T Consensus 32 ~~~~~I~yg~qiGA~~~llivL~llt~~~Kr 62 (284)
T PF02116_consen 32 NVRTAINYGVQIGACLLLLIVLWLLTKSEKR 62 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--S--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 4556777788888877777777777664443
No 409
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=34.69 E-value=72 Score=22.45 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
.++.++..|+|+++++.+..++|.+-
T Consensus 51 ~~~~~~~~Gili~~~vii~~li~~~~ 76 (200)
T PF05473_consen 51 FIICGILIGILITIFVIIATLIFAVP 76 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57788888888888877666666554
No 410
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=34.68 E-value=82 Score=17.29 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 18 LLCAILVVMFIVYR 31 (64)
Q Consensus 18 lv~ailLIlfli~r 31 (64)
+++++..=+..+||
T Consensus 39 ~llG~~~g~~~~~~ 52 (55)
T PF09527_consen 39 LLLGIAAGFYNVYR 52 (55)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444444
No 411
>PRK11660 putative transporter; Provisional
Probab=34.64 E-value=72 Score=25.16 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r~rKKde 37 (64)
+..++..|+++|+++++++++.-..|..+.+.
T Consensus 422 ~~~~~~~gi~~Gi~~s~~~~~~~~~~~~~~~~ 453 (568)
T PRK11660 422 VLFDMVIAISVGIVLASLLFMRRIAEMTRLAP 453 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhcccccc
No 412
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=34.63 E-value=58 Score=19.91 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r~rKKde 37 (64)
+-.|+.-|..||..++++.=.+-+.|++.+..
T Consensus 7 ikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~~ 38 (67)
T PF10247_consen 7 IKMGFMMGGAVGGAFGALFGTFSAFRYGARGR 38 (67)
T ss_pred HHHHHHHhhHHHhhhhhhhhhHHHhccCCCCc
Confidence 44577788888888888888888887666543
No 413
>COG0730 Predicted permeases [General function prediction only]
Probab=34.58 E-value=1.2e+02 Score=20.88 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q psy1892 8 STVIGGAVVGL 18 (64)
Q Consensus 8 ag~IaG~VvGl 18 (64)
.+.+.|.++|.
T Consensus 81 ~~~~~G~~lG~ 91 (258)
T COG0730 81 LGALIGAFLGA 91 (258)
T ss_pred HHHHHHHHHHH
Confidence 34455666664
No 414
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=34.54 E-value=1e+02 Score=23.68 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
-.||.. ..+...++=.+++|+.||+.
T Consensus 338 ~~aG~~-~ail~~ilP~~m~~~~r~~~ 363 (403)
T PRK15132 338 GYAGVA-LAVLALLLPSLLVWQSRKQN 363 (403)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhcC
Confidence 345543 33334455567888877653
No 415
>COG4794 EscS Type III secretory pathway, component EscS [Intracellular trafficking and secretion]
Probab=34.52 E-value=53 Score=21.38 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=15.4
Q ss_pred cchhHHHHHHHHHHHHHHH
Q psy1892 3 IPLATSTVIGGAVVGLLCA 21 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~a 21 (64)
-|-++.+.+.|.+||++=|
T Consensus 22 lPpvivAsvvGllVslvQA 40 (89)
T COG4794 22 LPPVIVASVVGLLVSLVQA 40 (89)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 4778889999999998755
No 416
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=34.46 E-value=80 Score=17.57 Aligned_cols=12 Identities=25% Similarity=0.633 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q psy1892 22 ILVVMFIVYRMR 33 (64)
Q Consensus 22 ilLIlfli~r~r 33 (64)
++++++++...|
T Consensus 36 Aiill~i~~~i~ 47 (48)
T PF04226_consen 36 AIILLFIYRLIR 47 (48)
T ss_pred HHHHHHHHHHHh
Confidence 444455544433
No 417
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=34.45 E-value=32 Score=26.82 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
+...|.++|+++=++-.+.+++|.+.
T Consensus 237 ~a~~Glf~Gil~lv~tii~lilf~v~ 262 (441)
T PF03189_consen 237 GASKGLFLGILVLVATIIVLILFFVL 262 (441)
T ss_pred CcchhHHHHHHHHHHHHHHhehhhhe
Confidence 34556666666655555556666554
No 418
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=34.28 E-value=49 Score=21.26 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHh
Q psy1892 19 LCAILVVMFIVYRMRK 34 (64)
Q Consensus 19 v~ailLIlfli~r~rK 34 (64)
++.++|++++|+++|=
T Consensus 36 ~L~~fL~~liVRCfrI 51 (81)
T PF11057_consen 36 LLCLFLGLLIVRCFRI 51 (81)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3446777778877664
No 419
>PF01313 Bac_export_3: Bacterial export proteins, family 3; InterPro: IPR002191 The fliL operon of Escherichia coli contains seven genes (including fliO, fliP, fliQ and fliR) involved in the biosynthesis and functioning of the flagellar organelle []. The fliO, fliP, fliQ and fliR genes encode highly hydrophobic polypeptides. The fliQ gene product, a small integral membrane protein that contains two putative transmembrane (TM) regions, is required for the assembly of the rivet at the earliest stage of flagellar biosynthesis. Proteins sharing an evolutionary relationship with FliQ have been found in a range of bacteria: these include Yop translocation protein S from Yersinia pestis []; surface antigen-presentation protein SpaQ from Salmonella typhimurium and Shigella flexneri []; and probable translocation protein Y4YM from Rhizobium sp. (strain NGR234) []. All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways [].; GO: 0009306 protein secretion, 0016020 membrane
Probab=34.15 E-value=53 Score=20.27 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=13.9
Q ss_pred chhHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCA 21 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~a 21 (64)
|-++++++.|.++|++=|
T Consensus 20 P~L~~alvvGlvIsi~QA 37 (76)
T PF01313_consen 20 PVLLVALVVGLVISIFQA 37 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788888888888654
No 420
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=33.98 E-value=60 Score=26.13 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r 31 (64)
++.|+++|+++|+.++.++ -++=.+
T Consensus 434 l~~~~~~gl~lg~~~a~l~-e~~d~~ 458 (754)
T TIGR01005 434 VGLAAVLGLLLGAIFALLR-ELFSGR 458 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcc
Confidence 5678889999998776554 444444
No 421
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=33.92 E-value=93 Score=17.63 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=8.9
Q ss_pred chhHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCA 21 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~a 21 (64)
|--+.|.++|+.|--+++
T Consensus 9 PLWlVgtv~G~~vi~lvg 26 (40)
T PF01788_consen 9 PLWLVGTVAGIAVIGLVG 26 (40)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 445566666655443333
No 422
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=33.85 E-value=1e+02 Score=23.02 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAVVGLLCAILVV 25 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLI 25 (64)
++...++.|+++|....+++-
T Consensus 254 ~fA~~li~Gli~gt~sslfva 274 (297)
T PRK13021 254 GFSIAMFIGILTGTFSSISVG 274 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888877776663
No 423
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=33.80 E-value=68 Score=18.69 Aligned_cols=19 Identities=37% Similarity=0.871 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVM 26 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIl 26 (64)
.+.++|+.+|+...+++++
T Consensus 4 ~~l~GG~lIGla~~~ll~~ 22 (62)
T PF14241_consen 4 SALIGGLLIGLAASLLLLL 22 (62)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777777776655443
No 424
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=33.74 E-value=97 Score=18.39 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
||--..-+-|++.++.+..++|++-+|
T Consensus 20 PGWGTtplM~~~m~lf~vfl~iiL~Iy 46 (52)
T PF00737_consen 20 PGWGTTPLMGVFMALFAVFLLIILEIY 46 (52)
T ss_dssp STTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 444455566777777777777777776
No 425
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=33.68 E-value=84 Score=19.23 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
.+++..++.+.++++.-++....+||
T Consensus 20 ~i~~a~~ls~~~~~~~kf~v~~pRKk 45 (73)
T PF02937_consen 20 HIVVAFVLSLGVAAAYKFGVAEPRKK 45 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34555555555555555444443444
No 426
>PRK05326 potassium/proton antiporter; Reviewed
Probab=33.67 E-value=60 Score=25.38 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAIL 23 (64)
Q Consensus 9 g~IaG~VvGlv~ail 23 (64)
.++.|+++|++++.+
T Consensus 194 ~~~~g~~~G~~~g~l 208 (562)
T PRK05326 194 QFGLGALIGLLGGWL 208 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444566666655543
No 427
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=33.63 E-value=36 Score=28.31 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=11.6
Q ss_pred chhHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCA 21 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~a 21 (64)
.|...|..+|+|+|++++
T Consensus 193 gG~~~Gaa~Gv~~Gli~~ 210 (764)
T TIGR02865 193 GGSGAGAAGGVVIGVILG 210 (764)
T ss_pred cCchHhHHHHHHHHHHHH
Confidence 355666667777776665
No 428
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=33.60 E-value=73 Score=24.55 Aligned_cols=14 Identities=14% Similarity=0.736 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 15 VVGLLCAILVVMFI 28 (64)
Q Consensus 15 VvGlv~ailLIlfl 28 (64)
++|+++.++++++-
T Consensus 256 i~Gliiv~~l~i~n 269 (283)
T TIGR01113 256 IAGLIIVLILIIYN 269 (283)
T ss_pred HhHHHHHHHHHHHH
Confidence 67777666655554
No 429
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=33.53 E-value=79 Score=24.55 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYRMR 33 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r~r 33 (64)
++.+-.|.|.|.++|..++=+++.|.+
T Consensus 161 la~AT~GLv~g~liGgpi~~~lirk~~ 187 (398)
T TIGR00210 161 IACATFGLVFGGIIGGPVAKFLIIRNK 187 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344555666666666666666665533
No 430
>PRK13661 hypothetical protein; Provisional
Probab=33.51 E-value=1.2e+02 Score=21.20 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCcccc
Q psy1892 9 TVIGGAVVGLLCAIL-VVMFIVYRMRKKDEGSYAL 42 (64)
Q Consensus 9 g~IaG~VvGlv~ail-LIlfli~r~rKKdegsY~l 42 (64)
|+++++.-.+..+++ .+++..|-.+++++||-..
T Consensus 147 ~~~~~~~n~~~~~i~g~~ll~~ya~~~~~~~~l~~ 181 (182)
T PRK13661 147 GIVAAIANIISIAIIGTLLLKAYAKSRTKKGSLKK 181 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc
Confidence 444444444444432 3344455566667776543
No 431
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=33.35 E-value=31 Score=22.49 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCA 21 (64)
Q Consensus 10 ~IaG~VvGlv~a 21 (64)
..+|++||++++
T Consensus 7 L~aG~lvG~iy~ 18 (90)
T PF07235_consen 7 LGAGLLVGVIYS 18 (90)
T ss_pred hhhhhHHHHHHH
Confidence 456666666665
No 432
>PLN02250 lipid phosphate phosphatase
Probab=33.33 E-value=54 Score=24.82 Aligned_cols=13 Identities=46% Similarity=0.736 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAI 22 (64)
Q Consensus 10 ~IaG~VvGlv~ai 22 (64)
+++|.++|+++|.
T Consensus 226 VlaG~lIG~~~A~ 238 (314)
T PLN02250 226 VFAGALIGLTVAS 238 (314)
T ss_pred HHHHHHHHHHHHH
Confidence 4666666665553
No 433
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=33.24 E-value=81 Score=21.70 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCA 21 (64)
Q Consensus 7 ~ag~IaG~VvGlv~a 21 (64)
++|++.|=..|.+++
T Consensus 14 l~G~~~GdlLG~llG 28 (125)
T PF03817_consen 14 LAGVFLGDLLGALLG 28 (125)
T ss_pred HHHHHHHHHHHHHhC
Confidence 456666666666554
No 434
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=33.23 E-value=78 Score=24.45 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCccc
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRMRK--KDEGSYA 41 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~rK--KdegsY~ 41 (64)
++..++++.+++.++.+++ ++|++| |++.+|+
T Consensus 168 ~~~~~lp~~iv~~~~~~~~-~~~ya~kv~~~P~~~ 201 (433)
T PRK09412 168 LLMVVIPSTLLAVMVAAFV-TNKMGKELKDDPEYQ 201 (433)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhccCChhHH
Confidence 3444444555554444444 445432 3333444
No 435
>cd06574 TM_PBP1_branched-chain-AA_like Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBP
Probab=33.23 E-value=81 Score=22.14 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLL 19 (64)
Q Consensus 8 ag~IaG~VvGlv 19 (64)
.+++.|+++|++
T Consensus 52 ~~~~~~~l~g~~ 63 (266)
T cd06574 52 AAILAGAAAGLV 63 (266)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 436
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=33.23 E-value=70 Score=25.77 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlf 27 (64)
..+++.|+++|++.++++++.
T Consensus 392 ~~~l~~GV~vGi~ls~~~~i~ 412 (554)
T COG0659 392 FFDLVIGVVVGILLACLLFIR 412 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666555544433
No 437
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=33.22 E-value=82 Score=21.69 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCA 21 (64)
Q Consensus 7 ~ag~IaG~VvGlv~a 21 (64)
+.|++.|=..|.+++
T Consensus 14 L~G~~lGdlLG~llG 28 (125)
T TIGR00807 14 LLGVYLGNILGMALG 28 (125)
T ss_pred HHHHHHHHHHHHHhC
Confidence 455556655555554
No 438
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.99 E-value=27 Score=24.85 Aligned_cols=12 Identities=33% Similarity=0.672 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q psy1892 16 VGLLCAILVVMF 27 (64)
Q Consensus 16 vGlv~ailLIlf 27 (64)
+|+++|++|-.+
T Consensus 183 ~GlllGlilp~l 194 (206)
T PRK10884 183 IGLLLGLLLPHL 194 (206)
T ss_pred HHHHHHHHhccc
Confidence 356666555444
No 439
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=32.93 E-value=67 Score=15.95 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCA 21 (64)
Q Consensus 10 ~IaG~VvGlv~a 21 (64)
+||=++||+++-
T Consensus 4 iIaPi~VGvvl~ 15 (21)
T PF13955_consen 4 IIAPIVVGVVLT 15 (21)
T ss_dssp HHHHHHHHHHHH
T ss_pred ehhhHHHHHHHH
Confidence 566677776543
No 440
>TIGR02459 CbtB cobalt transporter subunit CbtB (proposed). This model represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems. Evidence for this assignment includes 1) prediction of a single trans-membrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional trans-membrane segments.
Probab=32.92 E-value=1e+02 Score=18.67 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfl 28 (64)
+.-+..++.+.+++++++.|.
T Consensus 16 ~~r~~~~~~a~~lgl~~ly~v 36 (60)
T TIGR02459 16 AARLAAALVAALLGLFLVYFV 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555544443
No 441
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=32.88 E-value=1.2e+02 Score=19.28 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhcCCCcccccCCCCCCCCCccccCCccccc
Q psy1892 21 AILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFY 63 (64)
Q Consensus 21 ailLIlfli~r~rKKdegsY~leE~K~~~~~~~y~k~~~~efy 63 (64)
++.|.++..|...+.++. -+.+|... +.|+.=.||.|.
T Consensus 27 ~v~l~~~n~y~~~~eh~~-~~~pe~~~----Y~yl~IR~K~Fp 64 (86)
T cd00925 27 AVALCMLNAYLKHKEHEE-HERPEFVE----YEHLNIRTKPFP 64 (86)
T ss_pred HHHHHHHHHHhhhhcccc-cCCCCCCC----CccceeecCCCC
Confidence 345555555543333322 23444422 557777788774
No 442
>KOG2052|consensus
Probab=32.82 E-value=42 Score=27.74 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~r 31 (64)
|--+.++|.|+|+-+++.+++..+.++.
T Consensus 130 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 157 (513)
T KOG2052|consen 130 PVELVAIILGPVVFLLLIAILTVLGCFY 157 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHheeee
Confidence 4456778888866666555555444444
No 443
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=32.80 E-value=81 Score=22.76 Aligned_cols=11 Identities=18% Similarity=0.441 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVG 17 (64)
Q Consensus 7 ~ag~IaG~VvG 17 (64)
+++++++.++|
T Consensus 407 l~~~i~p~l~g 417 (465)
T TIGR00894 407 IGGLIASTLAG 417 (465)
T ss_pred HHHHHHHHhhh
Confidence 44444444444
No 444
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=32.72 E-value=80 Score=23.47 Aligned_cols=14 Identities=14% Similarity=0.494 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCA 21 (64)
Q Consensus 8 ag~IaG~VvGlv~a 21 (64)
+|+++|++++++++
T Consensus 155 gg~~~Gl~~~~~~g 168 (283)
T TIGR00145 155 GPAVAGLIVAVVVG 168 (283)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555554
No 445
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=32.72 E-value=77 Score=20.21 Aligned_cols=8 Identities=0% Similarity=0.679 Sum_probs=4.2
Q ss_pred HHHHHHHH
Q psy1892 24 VVMFIVYR 31 (64)
Q Consensus 24 LIlfli~r 31 (64)
++.+++|+
T Consensus 17 i~~y~~~k 24 (87)
T PF10883_consen 17 ILAYLWWK 24 (87)
T ss_pred HHHHHHHH
Confidence 34455665
No 446
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=32.71 E-value=1.2e+02 Score=20.78 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 18 LLCAILVVMFIVYR 31 (64)
Q Consensus 18 lv~ailLIlfli~r 31 (64)
+|++|++|+.+|..
T Consensus 17 vVvaI~~vv~~I~~ 30 (155)
T PF08496_consen 17 VVVAILAVVGLIVA 30 (155)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 447
>PF11752 DUF3309: Protein of unknown function (DUF3309); InterPro: IPR021738 This family is conserved in bacteria but its function is not known.
Probab=32.68 E-value=35 Score=20.02 Aligned_cols=19 Identities=21% Similarity=0.588 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 13 GAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r 31 (64)
+..+|+++.+++++.++-|
T Consensus 30 sG~lG~ilviviiL~llGr 48 (49)
T PF11752_consen 30 SGGLGLILVIVIILLLLGR 48 (49)
T ss_pred ccHHHHHHHHHHHHHHhcc
Confidence 3567888888888877653
No 448
>cd03388 PAP2_SPPase1 PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second messenger in the cell, and extracellularly by binding to G-protein coupled receptors of the endothelial differentiation gene family.
Probab=32.62 E-value=45 Score=21.53 Aligned_cols=12 Identities=42% Similarity=0.850 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCA 21 (64)
Q Consensus 10 ~IaG~VvGlv~a 21 (64)
+++|.++|++++
T Consensus 136 Vl~G~~lG~~~~ 147 (151)
T cd03388 136 VIAGSLIGVLIL 147 (151)
T ss_pred HHHHHHHHHHHH
Confidence 456666666554
No 449
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=32.57 E-value=64 Score=22.50 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q psy1892 12 GGAVVGLLCAILVVMFIVYRMRKKDEGSYA 41 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r~rKKdegsY~ 41 (64)
.|.++++++-.+||.+++. +.+|+-|+|.
T Consensus 7 ~~~~~s~~~N~~Li~Li~~-~s~k~~G~Yk 35 (307)
T PF10326_consen 7 IGFVLSLFLNSLLIYLILT-KSPKSLGSYK 35 (307)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccCCCCCCEE
Confidence 3556666666666665554 4556778874
No 450
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=32.57 E-value=50 Score=23.37 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1892 12 GGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r 31 (64)
.+++..+++++++++++.+|
T Consensus 2 ~~ii~~i~~~i~~~~~~~~r 21 (334)
T PF04515_consen 2 FAIIFLILALIIILFIIFLR 21 (334)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554443
No 451
>cd03385 PAP2_BcrC_like PAP2_like proteins, BcrC_like subfamily. Several members of this family have been annotated as bacitracin transport permeases, as it was suspected that they form the permease component of an ABC transporter system. It was shown, however, that BcrC from Bacillus subtilis posesses undecaprenyl pyrophosphate (UPP) phospatase activity, and it is hypothesized that it competes with bacitracin for UPP, increasing the cell's resistance to bacitracin.
Probab=32.31 E-value=51 Score=20.98 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAI 22 (64)
Q Consensus 10 ~IaG~VvGlv~ai 22 (64)
+++|.++|++++.
T Consensus 128 Vl~G~~lg~~~~~ 140 (144)
T cd03385 128 MLGAALVAVLSAL 140 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666665553
No 452
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=32.30 E-value=75 Score=22.90 Aligned_cols=24 Identities=21% Similarity=0.578 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 13 GAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r~rKKd 36 (64)
+=++.+++.++-+.+++++.|+++
T Consensus 240 ~Q~isl~~~~~gi~~~~~~~~~~~ 263 (269)
T PRK00052 240 GQILSIPMILLGIILLIWAYRKKR 263 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444444445556555544
No 453
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=32.26 E-value=53 Score=27.26 Aligned_cols=20 Identities=20% Similarity=0.702 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlf 27 (64)
.|+|+|++.|+.+++.++++
T Consensus 446 ~GAi~G~~~GL~~tlv~i~l 465 (529)
T COG4147 446 AGAIAGMLLGLIVTLVLIIL 465 (529)
T ss_pred HhHHHHHHHHHHHHHHHHHh
Confidence 68899999999888776654
No 454
>KOG3884|consensus
Probab=32.20 E-value=1.3e+02 Score=24.53 Aligned_cols=49 Identities=18% Similarity=0.085 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhcCCCcccccCCCCCCCCCccccCC
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR--MRKKDEGSYALEEPKRSPASNSYMKNS 58 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r--~rKKdegsY~leE~K~~~~~~~y~k~~ 58 (64)
.|...|+++.+++++-.+.+-+ +++|.+..=|.|-.+-.-+.+...++|
T Consensus 298 lIla~v~~v~aa~~Vg~la~g~~~~~nR~~~~aD~eya~y~gTgp~~r~sp 348 (437)
T KOG3884|consen 298 LILAAVGTVMAAGLVGTLAGGTYYYKNRTETPADGEYAPYAGTGPGFRKSP 348 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeccccccccccccccCCCCCCCcCcCC
Confidence 3444444544444443333333 566766666665554433334444444
No 455
>PRK14793 lipoprotein signal peptidase; Provisional
Probab=32.12 E-value=61 Score=21.79 Aligned_cols=13 Identities=8% Similarity=0.478 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q psy1892 18 LLCAILVVMFIVY 30 (64)
Q Consensus 18 lv~ailLIlfli~ 30 (64)
+.+|++++++..+
T Consensus 128 I~iGv~lll~~~~ 140 (150)
T PRK14793 128 IVIGVGLLMWLML 140 (150)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 456
>PF15202 Adipogenin: Adipogenin
Probab=32.08 E-value=1.1e+02 Score=19.54 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1892 16 VGLLCAILVVMFIVYR 31 (64)
Q Consensus 16 vGlv~ailLIlfli~r 31 (64)
.++-.|++|.+++||.
T Consensus 21 lclpv~lllfl~ivwl 36 (81)
T PF15202_consen 21 LCLPVGLLLFLLIVWL 36 (81)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455567777777776
No 457
>PRK14792 lipoprotein signal peptidase; Provisional
Probab=32.07 E-value=46 Score=22.70 Aligned_cols=13 Identities=8% Similarity=0.202 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q psy1892 19 LCAILVVMFIVYR 31 (64)
Q Consensus 19 v~ailLIlfli~r 31 (64)
.+|++++++..++
T Consensus 139 ~iGv~lll~~~~~ 151 (159)
T PRK14792 139 NIAVICFIIDLIK 151 (159)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444554
No 458
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=31.96 E-value=76 Score=18.69 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q psy1892 20 CAILVVMFIVYRMRKKDEG 38 (64)
Q Consensus 20 ~ailLIlfli~r~rKKdeg 38 (64)
++++..++..+..+..+|.
T Consensus 78 ~~~~~~~~~~~~~~~~EE~ 96 (106)
T PF04191_consen 78 LAVLAFLLYYIFIIRFEER 96 (106)
T ss_pred HHHHHHHHHHHHHHHhHHH
Confidence 3333333333333334443
No 459
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=31.93 E-value=1.3e+02 Score=20.05 Aligned_cols=10 Identities=10% Similarity=0.720 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q psy1892 22 ILVVMFIVYR 31 (64)
Q Consensus 22 ilLIlfli~r 31 (64)
++++++.++.
T Consensus 98 ~~ll~~~~~~ 107 (240)
T PF01925_consen 98 LFLLLLAIYM 107 (240)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 460
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=31.84 E-value=63 Score=26.29 Aligned_cols=32 Identities=9% Similarity=0.257 Sum_probs=19.5
Q ss_pred chhHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 4 PLATSTVIG----GAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 4 ~~~~ag~Ia----G~VvGlv~ailLIlfli~r~rKK 35 (64)
||+.+|+++ +.++|.++++++.-++....+|+
T Consensus 366 pg~~~g~~a~~~~sgflg~Ii~~~l~gyv~~~l~k~ 401 (631)
T PRK09765 366 PGFAAGLAANMIGSGFLGAVVGGLIAGYLMRWVKNH 401 (631)
T ss_pred chhHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 555555554 23677777777777666555553
No 461
>PF13441 Gly-zipper_YMGG: YMGG-like Gly-zipper
Probab=31.78 E-value=45 Score=19.02 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=11.4
Q ss_pred cchhHHHHHHHHHHHHHHH
Q psy1892 3 IPLATSTVIGGAVVGLLCA 21 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~a 21 (64)
+.+.+.|.++|.++|.+.+
T Consensus 4 ~~GA~iGA~~GA~iG~~~g 22 (45)
T PF13441_consen 4 VRGAAIGAAAGAVIGAIIG 22 (45)
T ss_pred hhHHHHHHHHHHHHHHhhC
Confidence 3455666666666666543
No 462
>PLN03074 auxin influx permease; Provisional
Probab=31.54 E-value=76 Score=24.71 Aligned_cols=20 Identities=20% Similarity=0.062 Sum_probs=11.9
Q ss_pred CcchhHHHHHHHHHHHHHHH
Q psy1892 2 TIPLATSTVIGGAVVGLLCA 21 (64)
Q Consensus 2 ~~~~~~ag~IaG~VvGlv~a 21 (64)
++-|...|+|.=+++|+++.
T Consensus 72 ~~~G~v~Gii~lv~~~~l~~ 91 (473)
T PLN03074 72 SQLGMLSGILFQIFYGLLGS 91 (473)
T ss_pred HHccHHHHHHHHHHHHHHHH
Confidence 45566666665566665555
No 463
>KOG3762|consensus
Probab=31.46 E-value=1.1e+02 Score=25.98 Aligned_cols=25 Identities=36% Similarity=0.798 Sum_probs=14.2
Q ss_pred HHHHHHHHHH------------HHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVV------------GLLCAILVVMFIVYR 31 (64)
Q Consensus 7 ~ag~IaG~Vv------------Glv~ailLIlfli~r 31 (64)
++++|+|.++ |+.|-+.+++|++.+
T Consensus 511 ~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 511 LGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred hhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666654 555555555555554
No 464
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).
Probab=31.41 E-value=1.3e+02 Score=21.55 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=3.3
Q ss_pred HHhcCCC
Q psy1892 32 MRKKDEG 38 (64)
Q Consensus 32 ~rKKdeg 38 (64)
.||+.||
T Consensus 305 ~~r~~~~ 311 (312)
T TIGR03226 305 ARRAGEG 311 (312)
T ss_pred HhhccCC
Confidence 4444454
No 465
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=31.26 E-value=95 Score=24.41 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMF 27 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlf 27 (64)
+|-|+.+|.++++.+++.
T Consensus 320 lil~~LiGgm~g~g~vL~ 337 (347)
T COG3765 320 LILGALIGGMLGAGVVLL 337 (347)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666555443
No 466
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=31.21 E-value=1e+02 Score=17.25 Aligned_cols=9 Identities=22% Similarity=0.379 Sum_probs=4.9
Q ss_pred hHHHHHHHH
Q psy1892 6 ATSTVIGGA 14 (64)
Q Consensus 6 ~~ag~IaG~ 14 (64)
.+..+++|+
T Consensus 8 fl~Sl~aG~ 16 (39)
T PF06596_consen 8 FLLSLVAGA 16 (39)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 345556665
No 467
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=31.11 E-value=67 Score=21.42 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfl 28 (64)
..|-+.|+.+|.+++.+=++|+
T Consensus 88 ~~G~~~Gv~iGClLGM~PLlF~ 109 (111)
T PF10507_consen 88 NLGRAIGVTIGCLLGMFPLLFI 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777777777776655553
No 468
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=31.06 E-value=76 Score=21.92 Aligned_cols=6 Identities=17% Similarity=0.451 Sum_probs=2.4
Q ss_pred HHHHHH
Q psy1892 25 VMFIVY 30 (64)
Q Consensus 25 Ilfli~ 30 (64)
+.+++.
T Consensus 198 ~~~~l~ 203 (209)
T PF11353_consen 198 LGFLLR 203 (209)
T ss_pred HHHHHH
Confidence 334443
No 469
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=31.01 E-value=92 Score=18.02 Aligned_cols=22 Identities=5% Similarity=0.203 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhc
Q psy1892 14 AVVGLLCAILVVMFIVYR-MRKK 35 (64)
Q Consensus 14 ~VvGlv~ailLIlfli~r-~rKK 35 (64)
++|.++|...++.+.++- -|++
T Consensus 5 ~iV~i~iv~~lLg~~I~~~~K~y 27 (50)
T PF12606_consen 5 LIVSIFIVMGLLGLSICTTLKAY 27 (50)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 456666665555555544 4444
No 470
>KOG4026|consensus
Probab=31.01 E-value=51 Score=24.28 Aligned_cols=34 Identities=26% Similarity=0.155 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALE 43 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~rKKdegsY~le 43 (64)
+|+|++-+++++.+...+-....|++.|-+++.+
T Consensus 165 AIig~~daliL~~lsf~l~~k~~~~~p~~~~~~g 198 (207)
T KOG4026|consen 165 AIIGILDALILAFLSFVLGTKQQRLLPEESKAEG 198 (207)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccchhhhcC
Confidence 4677777777776665555544455445444443
No 471
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=31.00 E-value=72 Score=16.23 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q psy1892 16 VGLLCAILVVMF 27 (64)
Q Consensus 16 vGlv~ailLIlf 27 (64)
+|++++++++++
T Consensus 12 ~g~~~~~~ll~~ 23 (34)
T PF13172_consen 12 LGLIAAIFLLLL 23 (34)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 472
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=30.97 E-value=77 Score=26.36 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGS 39 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~rKKdegs 39 (64)
.+==.|...++.++|.-|+..+.+-|| ||.|
T Consensus 82 ~aw~mgl~t~i~~avmsIL~v~~~tRk-dEes 112 (536)
T COG3559 82 GAWKMGLFTLIAVAVMSILTVIRHTRK-DEES 112 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCC-cccc
Confidence 333457777888888777777765444 5544
No 473
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=30.90 E-value=75 Score=21.26 Aligned_cols=9 Identities=33% Similarity=0.637 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q psy1892 10 VIGGAVVGL 18 (64)
Q Consensus 10 ~IaG~VvGl 18 (64)
+++|+++++
T Consensus 77 v~~~~~~~i 85 (136)
T cd00922 77 VFGGVLAFI 85 (136)
T ss_pred HHHHHHHHH
Confidence 344444444
No 474
>PRK01658 holin-like protein; Validated
Probab=30.90 E-value=1.4e+02 Score=19.58 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r~rKKde 37 (64)
++..++.+.++.+++...+.=++..|.++|+.
T Consensus 91 il~~ivvsT~l~l~vtg~~~~~l~~~~~~~~~ 122 (122)
T PRK01658 91 LFLVVVISTFVVMIVTGYLTQLLAKRKEREQR 122 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
No 475
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=30.89 E-value=35 Score=23.18 Aligned_cols=14 Identities=21% Similarity=0.861 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 16 VGLLCAILVVMFIV 29 (64)
Q Consensus 16 vGlv~ailLIlfli 29 (64)
.|+++|++|+++++
T Consensus 157 LGvl~Gl~lvIll~ 170 (170)
T TIGR02833 157 LGVLVGLMIVLLLL 170 (170)
T ss_pred HHHHHHHHHHHHhC
No 476
>COG4267 Predicted membrane protein [Function unknown]
Probab=30.75 E-value=78 Score=25.93 Aligned_cols=33 Identities=9% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCccc
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYR-MRKKDEGSYA 41 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r-~rKKdegsY~ 41 (64)
|+.-+..+|+.+-+.+..+.+.| +|.|.++.+|
T Consensus 188 ~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~i~Fd 221 (467)
T COG4267 188 GLLLTLDIGIFIILFLLNFYILRYFKSSRRIGFD 221 (467)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhccccccccee
No 477
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=30.62 E-value=1.2e+02 Score=19.39 Aligned_cols=27 Identities=4% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
+|.++++-++..++.|+++....+..+
T Consensus 38 LVic~~lVfVii~lFi~ll~~i~~~~e 64 (84)
T PF06143_consen 38 LVICCFLVFVIIVLFILLLYNINKNAE 64 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
No 478
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=30.59 E-value=77 Score=20.78 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1892 11 IGGAVVGLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r~rKKde 37 (64)
|...|+|++.-+=+++|-.||+..++.
T Consensus 50 ii~FIlG~vl~lGilifs~y~~C~~~~ 76 (91)
T PHA02680 50 VTCFIVGAVLLLGLFVFSMYRKCSGSM 76 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCc
No 479
>KOG1024|consensus
Probab=30.55 E-value=42 Score=27.88 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhcCCC
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR-MRKKDEG 38 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r-~rKKdeg 38 (64)
++.|+..++++-+.+|+..... -+||++|
T Consensus 189 V~v~va~a~v~lva~il~c~~~~s~Kr~~~ 218 (563)
T KOG1024|consen 189 VGVIVALALVSLVALILYCAKGPSKKRSNG 218 (563)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcccchhhcc
No 480
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=30.51 E-value=26 Score=26.83 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCCCc
Q psy1892 13 GAVVGLLCAILVVMFIVYR-MRKKDEGS 39 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r-~rKKdegs 39 (64)
|+.+|+++-+|||.+-|-- +.||.|.+
T Consensus 74 ~~~~G~~~v~liLgl~ig~p~~krkek~ 101 (279)
T PF07271_consen 74 GGSAGLLAVALILGLAIGIPIYKRKEKR 101 (279)
T ss_pred cchhhHHHHHHHHHHhhcchhhhhhHHH
No 481
>cd01610 PAP2_like PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies. Several members of this superfamily have been predicted to be transmembrane proteins.
Probab=30.45 E-value=63 Score=18.43 Aligned_cols=15 Identities=53% Similarity=1.006 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILV 24 (64)
Q Consensus 10 ~IaG~VvGlv~ailL 24 (64)
+++|.++|.+++.+.
T Consensus 107 v~~G~~lg~~~~~~~ 121 (122)
T cd01610 107 VLAGALLGILVALLV 121 (122)
T ss_pred HHHHHHHHHHHHHHH
No 482
>PF07694 5TM-5TMR_LYT: 5TMR of 5TMR-LYT; InterPro: IPR011620 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the transmembrane region of the 5TM-Lyt (5TM Receptors of the LytS-YhcK type) histidine kinase []. The two-component regulatory system LytS/LytT probably regulates genes involved in cell wall metabolism. ; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0007047 cellular cell wall organization, 0016021 integral to membrane
Probab=30.45 E-value=80 Score=20.14 Aligned_cols=27 Identities=19% Similarity=0.619 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
|=+++|..+|-.+|++.+++..++=++
T Consensus 50 ~iil~~lygG~~~~li~~~i~~~~R~~ 76 (169)
T PF07694_consen 50 PIILAGLYGGPISGLIAGLIIGIYRFL 76 (169)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHH
No 483
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=30.43 E-value=1.2e+02 Score=18.67 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-cCCCc
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYR-MRK-KDEGS 39 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r-~rK-Kdegs 39 (64)
++.++..-.=.|.++-|+-.+++|+. .++ |++|.
T Consensus 8 ~l~~i~~~~efG~vf~i~s~f~~I~~Nl~~~r~~ge 43 (71)
T PF10260_consen 8 VLQYIFIEYEFGPVFFILSGFYLIFTNLGTPRKPGE 43 (71)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCCCCC
No 484
>PRK11837 undecaprenyl pyrophosphate phosphatase; Provisional
Probab=30.41 E-value=86 Score=21.76 Aligned_cols=21 Identities=14% Similarity=0.409 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~ 30 (64)
+++|+++|++++.+.-.+.-+
T Consensus 154 VlgG~~lG~~~~~~~~~~~~~ 174 (202)
T PRK11837 154 MLGALLVGMIGCLSAQIIWQL 174 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 485
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=30.38 E-value=59 Score=25.08 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfl 28 (64)
+.|.++|.+++++++.+.
T Consensus 53 ~~GT~iGa~~~~~lv~~~ 70 (650)
T PF04632_consen 53 LIGTLIGAAAGLLLVALF 70 (650)
T ss_pred HHHHHHHHHHHHHHHHHh
No 486
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=30.34 E-value=38 Score=22.72 Aligned_cols=14 Identities=21% Similarity=0.788 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 16 VGLLCAILVVMFIV 29 (64)
Q Consensus 16 vGlv~ailLIlfli 29 (64)
.|+++|++++++++
T Consensus 157 LGvl~G~~lvIlLi 170 (170)
T PF09548_consen 157 LGVLGGLFLVILLI 170 (170)
T ss_pred HHHHHHHHHHHHhC
No 487
>PF00950 ABC-3: ABC 3 transport family; InterPro: IPR001626 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 3 of ABC transporters.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane
Probab=30.28 E-value=87 Score=22.47 Aligned_cols=24 Identities=33% Similarity=0.794 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRM 32 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~ 32 (64)
+.++|+++|++|+++=.+..++|+
T Consensus 8 all~~~l~~~~~~~lG~~vv~Rr~ 31 (257)
T PF00950_consen 8 ALLAGLLIALLCGLLGVFVVLRRM 31 (257)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhH
No 488
>PRK14797 lipoprotein signal peptidase; Provisional
Probab=30.16 E-value=62 Score=21.72 Aligned_cols=22 Identities=5% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q psy1892 16 VGLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 16 vGlv~ailLIlfli~r~rKKde 37 (64)
+.+.+|++++++..++.+++++
T Consensus 129 ~~I~iG~~lll~~~~~~~~~~~ 150 (150)
T PRK14797 129 SYLTVGVILLLICLLKEEDNGN 150 (150)
T ss_pred HHHHHHHHHHHHHHHhccccCC
No 489
>KOG4550|consensus
Probab=30.05 E-value=54 Score=27.44 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYA 41 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~ 41 (64)
|.-+.=+-+-+++|+.|-|+.|+.+.+ +|.|.|..|+
T Consensus 557 PS~lIl~s~~al~gvC~~il~ii~~Lh-~~EKkeD~~E 593 (606)
T KOG4550|consen 557 PSNLILLSAIALIGVCVFILAIIGILH-WQEKKEDDRE 593 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhee-hhhhhhhhHH
No 490
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=29.94 E-value=15 Score=24.67 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILV 24 (64)
Q Consensus 10 ~IaG~VvGlv~ailL 24 (64)
+|+|...|+.+|+.|
T Consensus 6 IvGaG~aGl~~A~~L 20 (356)
T PF01494_consen 6 IVGAGPAGLAAALAL 20 (356)
T ss_dssp EE--SHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHH
No 491
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=29.92 E-value=51 Score=27.30 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfl 28 (64)
|+|.++|+++|++++.+.
T Consensus 434 i~GTl~G~llg~~l~~l~ 451 (701)
T TIGR01667 434 IIGTVVGLVIGVALHFLI 451 (701)
T ss_pred HHHHHHHHHHHHHHHHHc
No 492
>PHA03295 envelope glycoprotein H; Provisional
Probab=29.92 E-value=70 Score=27.16 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 12 GGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r~rK 34 (64)
.+++++.++++++.+|++|||-|
T Consensus 690 ii~iil~~i~ai~~ly~lykm~~ 712 (714)
T PHA03295 690 IILVIIYVLIAIIALFGLYRLCR 712 (714)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHc
No 493
>PF09402 MSC: Man1-Src1p-C-terminal domain; InterPro: IPR018996 This entry represents the Inner nuclear membrane proteins MAN1 (also known as LEM domain-containing protein 3) and LEM domain-containing protein 2 (or LEM protein 2). Emerin and MAN1 are LEM domain-containing integral membrane proteins of the vertebrate nuclear envelope []. MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C-terminal nulceoplasmic region forms a DNA binding winged helix and binds to Smad []. LEM protein 2 is an essential protein involved in chromosome segregation and cell division, probably via its interaction with lmn-1, the main component of nuclear lamina. Has some overlapping function with emr-1.; GO: 0005639 integral to nuclear inner membrane; PDB: 2CH0_A.
Probab=29.83 E-value=9.2 Score=27.56 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccccC
Q psy1892 13 GAVVGLLCAILVVMFIVYRMRKKDEGSYALEE 44 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r~rKKdegsY~leE 44 (64)
..++++++.++++.++.++++++.+.+-..++
T Consensus 220 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 251 (334)
T PF09402_consen 220 LIILGVLILLLLIKYIRYRYRKRREEKARVEE 251 (334)
T ss_dssp --------------------STHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PRK10457 hypothetical protein; Provisional
Probab=29.83 E-value=1.4e+02 Score=18.45 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=0.0
Q ss_pred hhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHH
Q psy1892 5 LATSTVIGGAV-----------------VGLLCAILVVMFIVYRMR 33 (64)
Q Consensus 5 ~~~ag~IaG~V-----------------vGlv~ailLIlfli~r~r 33 (64)
|+.++.++|.+ +.-+.+.+++++++...|
T Consensus 36 GiiGA~iGg~l~~~~g~~~~~g~~~~~~i~aviGAiill~i~~~~~ 81 (82)
T PRK10457 36 GIVGAVVGGWISTFFGFGKVDGFNFGSFVVAVIGAIVVLFIYRKIK 81 (82)
T ss_pred HHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHh
No 495
>cd03389 PAP2_lipid_A_1_phosphatase PAP2_like proteins, Lipid A 1-phosphatase subfamily. Lipid A 1-phosphatase, or LpxE from Francisella novicida selectively dephosphorylates lipid A at the 1-position. Lipid A is the membrane-anchor component of lipopolysaccharides (LPS), the major constituents of the outer membrane in many gram-negative bacteria.
Probab=29.73 E-value=58 Score=21.94 Aligned_cols=15 Identities=33% Similarity=0.705 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILV 24 (64)
Q Consensus 10 ~IaG~VvGlv~ailL 24 (64)
+++|.++|++++.++
T Consensus 168 Vl~G~~lG~~~~~~~ 182 (186)
T cd03389 168 VIAGSLLGAVTALAL 182 (186)
T ss_pred HHHHHHHHHHHHHHH
No 496
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=29.72 E-value=1.8e+02 Score=22.95 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCC
Q psy1892 2 TIPLATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRS 48 (64)
Q Consensus 2 ~~~~~~ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE~K~~ 48 (64)
++..+..=.+||++=|+++++.+....+|--|||+-. .++|.+
T Consensus 117 a~~SI~~LF~aGi~PGlLl~~~lm~~~~~~a~~~~~~----~~~~~s 159 (379)
T COG1593 117 AGVSIGKLFVAGIVPGLLLTLALMVVAYIVARKRGYP----REERAS 159 (379)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----cccCCC
No 497
>PF14960 ATP_synth_reg: ATP synthase regulation
Probab=29.63 E-value=61 Score=18.93 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy1892 14 AVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 14 ~VvGlv~ailLIlfli~r~rKK 35 (64)
+|.....++.||.+++..+|||
T Consensus 28 ~~~ATya~i~li~~~~k~~~kk 49 (49)
T PF14960_consen 28 VAKATYASIGLIILYFKLRRKK 49 (49)
T ss_pred hHHHHHHHHHHHHHHHhcccCC
No 498
>TIGR03770 anch_rpt_perm anchored repeat-type ABC transporter, permease subunit. This protein family is the permease subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in the adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous permease subunits outside the scope of this family include manganese transporter MntB in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=29.45 E-value=1e+02 Score=22.27 Aligned_cols=24 Identities=8% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRM 32 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~ 32 (64)
+.+++.++|++|+++=.+..++|+
T Consensus 20 al~~~~l~~~~~~~~G~~vvlrr~ 43 (270)
T TIGR03770 20 ALLVAVLSSIVCGVVGTHVVLRGM 43 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
No 499
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=29.42 E-value=1.1e+02 Score=21.08 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGS 39 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~rKKdegs 39 (64)
.+..+++.++..++++...+++.||+....
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 207 (208)
T COG0586 178 LLGILVLAVLVLVLLLALLWWLRRRKKKKA 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 500
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=29.41 E-value=1.4e+02 Score=20.96 Aligned_cols=29 Identities=21% Similarity=0.002 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
....+++.+++.+++++++.+++.++..|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~r~i~~ 190 (457)
T TIGR01386 162 LRKWLILIAVLLVLLTALLGWWITRLGLE 190 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Done!