Query psy1892
Match_columns 64
No_of_seqs 74 out of 76
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 18:55:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ejp_A Syndecan-4; symmetric-p 99.6 1.9E-17 6.6E-22 87.3 1.0 28 31-64 1-28 (28)
2 2k1k_A Ephrin type-A receptor 98.3 6.4E-07 2.2E-11 48.8 3.8 29 3-31 5-33 (38)
3 2l34_A TYRO protein tyrosine k 97.7 3.7E-05 1.3E-09 40.9 3.0 30 5-34 3-32 (33)
4 2jwa_A Receptor tyrosine-prote 97.4 0.00026 9E-09 39.8 4.8 14 8-21 11-24 (44)
5 2k1k_A Ephrin type-A receptor 97.3 0.00012 3.9E-09 39.8 2.3 28 3-30 9-36 (38)
6 1afo_A Glycophorin A; integral 97.3 0.00045 1.5E-08 38.6 4.6 34 1-35 7-40 (40)
7 2l2t_A Receptor tyrosine-prote 97.2 0.00049 1.7E-08 38.6 3.9 9 9-17 10-18 (44)
8 2l2t_A Receptor tyrosine-prote 97.2 0.00086 2.9E-08 37.6 4.8 33 3-36 8-40 (44)
9 2ks1_B Epidermal growth factor 96.7 0.0011 3.8E-08 37.0 2.5 30 9-38 11-40 (44)
10 2knc_B Integrin beta-3; transm 96.5 0.00068 2.3E-08 41.3 1.1 22 8-29 11-32 (79)
11 2k9y_A Ephrin type-A receptor 96.2 0.0013 4.4E-08 34.7 0.8 16 7-22 12-27 (41)
12 2k9j_B Integrin beta-3; transm 94.8 0.045 1.5E-06 29.9 3.9 26 6-31 7-32 (43)
13 2knc_B Integrin beta-3; transm 94.3 0.011 3.9E-07 35.8 0.8 39 5-43 12-50 (79)
14 2l34_A TYRO protein tyrosine k 93.6 0.14 4.6E-06 26.9 4.1 26 3-28 5-30 (33)
15 1s7q_A H-2KB, H-2 class I hist 93.6 0.013 4.3E-07 42.1 0.0 19 25-43 303-324 (348)
16 2knc_A Integrin alpha-IIB; tra 92.2 0.44 1.5E-05 27.4 5.3 22 10-31 14-35 (54)
17 2l8s_A Integrin alpha-1; trans 91.8 0.26 8.8E-06 28.5 3.9 22 10-31 11-32 (54)
18 1iij_A ERBB-2 receptor protein 90.1 0.26 8.9E-06 26.4 2.7 12 10-21 9-20 (35)
19 1cd1_A CD1, MCD1D.1; immunolog 88.2 0.092 3.2E-06 36.7 0.0 18 7-24 283-300 (315)
20 2klu_A T-cell surface glycopro 87.6 0.96 3.3E-05 27.5 4.3 55 2-58 6-67 (70)
21 1q55_A EP-cadherin, C-cadherin 86.2 0.14 4.8E-06 40.8 0.0 25 4-28 700-724 (880)
22 1iij_A ERBB-2 receptor protein 85.0 0.26 8.9E-06 26.4 0.7 25 4-30 8-32 (35)
23 2l35_A DAP12-NKG2C_TM; immunor 82.9 0.78 2.7E-05 27.4 2.2 30 6-35 4-33 (63)
24 2l6w_A Beta-type platelet-deri 82.3 0.3 1E-05 26.9 0.0 26 11-36 11-36 (39)
25 2k1a_A Integrin alpha-IIB; sin 78.7 2.6 8.8E-05 22.9 3.3 22 10-31 12-33 (42)
26 1afo_A Glycophorin A; integral 77.6 4.9 0.00017 22.1 4.2 29 6-34 7-36 (40)
27 2jp3_A FXYD domain-containing 74.6 3.8 0.00013 24.6 3.5 19 11-29 19-37 (67)
28 2k9j_B Integrin beta-3; transm 71.4 9.8 0.00033 20.4 4.9 17 5-21 11-28 (43)
29 2xq2_A Sodium/glucose cotransp 71.1 3.9 0.00013 30.7 3.6 35 4-38 547-581 (593)
30 2j5l_A Apical membrane antigen 70.5 0.89 3E-05 36.5 0.0 45 9-59 514-558 (581)
31 1pfi_A Major coat protein of P 68.8 9.3 0.00032 21.4 4.0 25 10-35 21-45 (46)
32 2wy3_A MHC class I polypeptide 67.5 1.1 3.8E-05 31.3 0.0 7 13-19 293-299 (319)
33 2l9u_A Receptor tyrosine-prote 66.8 11 0.00036 20.6 3.9 23 10-34 12-34 (40)
34 2k9p_A Pheromone alpha factor 66.4 4.2 0.00015 24.6 2.5 24 7-30 20-43 (80)
35 2lk9_A Bone marrow stromal ant 65.9 5.9 0.0002 21.2 2.7 18 13-30 10-27 (35)
36 1cd1_A CD1, MCD1D.1; immunolog 64.8 1.4 4.6E-05 30.7 0.0 18 11-28 283-300 (315)
37 1q55_A EP-cadherin, C-cadherin 63.4 1.5 5.1E-05 35.0 0.0 26 4-30 704-729 (880)
38 1q90_G Cytochrome B6F complex 63.4 12 0.0004 20.2 3.6 24 7-30 6-29 (37)
39 2l8s_A Integrin alpha-1; trans 63.2 9.9 0.00034 21.8 3.5 16 6-21 12-27 (54)
40 2knc_A Integrin alpha-IIB; tra 62.6 14 0.00048 21.0 4.1 15 6-20 15-29 (54)
41 4djk_A Probable glutamate/gamm 59.1 10 0.00034 26.6 3.6 14 22-35 456-469 (511)
42 2jo1_A Phospholemman; FXYD1, N 58.6 16 0.00055 22.2 4.0 19 11-29 18-36 (72)
43 1pi7_A VPU protein, U ORF prot 56.7 20 0.00069 18.8 4.4 22 10-31 7-30 (36)
44 3arc_X Photosystem II PSBX pro 54.9 19 0.00065 19.4 3.6 14 6-19 9-22 (39)
45 2lbg_A Major prion protein; co 54.9 17 0.00059 18.4 3.2 19 6-24 3-21 (27)
46 4ev6_A Magnesium transport pro 54.6 9.3 0.00032 26.6 2.9 16 15-30 318-333 (339)
47 1fgj_A Hydroxylamine oxidoredu 53.1 2.8 9.7E-05 32.2 0.0 25 12-37 521-545 (546)
48 2zxe_G FXYD10, phospholemman-l 52.8 8.3 0.00028 23.5 2.1 21 11-31 21-41 (74)
49 3bz1_X Photosystem II PSBX pro 48.2 26 0.00089 19.8 3.6 14 6-19 19-32 (50)
50 1vf5_G Protein PET G; photosyn 47.4 6.4 0.00022 21.3 0.8 23 8-30 7-29 (37)
51 1v54_I STA, cytochrome C oxida 43.2 31 0.001 20.5 3.5 27 9-35 20-46 (73)
52 1bts_A BAND 3 anion transport 41.6 24 0.00084 17.2 2.4 17 6-22 3-19 (26)
53 2dw3_A Intrinsic membrane prot 41.1 60 0.002 19.8 4.6 10 43-52 56-65 (77)
54 2jln_A MHP1; hydantoin, transp 36.9 36 0.0012 25.0 3.7 6 53-58 481-486 (501)
55 1q16_C Cytochrome B-NR, respir 36.5 50 0.0017 21.6 4.1 27 9-35 90-116 (225)
56 3dh4_A Sodium/glucose cotransp 36.4 80 0.0027 23.2 5.6 18 3-20 424-441 (530)
57 4dx5_A Acriflavine resistance 33.9 95 0.0033 24.7 5.9 22 8-29 1005-1026(1057)
58 1v54_D Cytochrome C oxidase su 32.5 64 0.0022 21.3 4.1 19 8-26 79-97 (147)
59 2kse_A Sensor protein QSEC; me 31.6 49 0.0017 19.1 3.1 16 14-29 168-183 (186)
60 2gsm_B Cytochrome C oxidase su 30.9 55 0.0019 22.8 3.8 12 24-35 50-61 (262)
61 3kkj_A Amine oxidase, flavin-c 30.5 4.8 0.00016 23.0 -1.5 16 9-24 6-21 (336)
62 4f35_D Transporter, NADC famil 30.1 44 0.0015 23.7 3.2 27 12-38 207-233 (449)
63 2kv5_A FST, putative uncharact 30.1 57 0.002 17.0 2.8 22 6-31 4-25 (33)
64 1hgv_A PH75 inovirus major coa 29.7 75 0.0026 17.6 4.0 27 8-35 16-42 (46)
65 3sok_A Fimbrial protein; pilus 29.7 79 0.0027 19.6 4.0 22 10-31 7-28 (151)
66 1eys_H Photosynthetic reaction 28.9 73 0.0025 22.8 4.2 28 18-46 17-45 (259)
67 3j0c_A E1 envelope glycoprotei 28.9 60 0.002 25.3 3.9 25 7-31 414-438 (442)
68 2nr9_A Protein GLPG homolog; i 28.8 50 0.0017 21.3 3.0 15 8-22 167-181 (196)
69 2zy9_A Mg2+ transporter MGTE; 28.5 60 0.0021 23.7 3.7 16 6-21 383-398 (473)
70 2iub_A CORA, divalent cation t 28.3 14 0.00048 26.0 0.3 15 15-29 342-356 (363)
71 2lx0_A Membrane fusion protein 27.8 69 0.0024 16.5 3.2 7 10-16 8-14 (32)
72 1rzh_H Reaction center protein 27.7 1.1E+02 0.0038 22.0 4.9 27 18-45 18-45 (260)
73 2w1k_A Putative sortase; pilus 27.5 13 0.00044 26.0 0.0 12 20-31 233-244 (252)
74 4dve_A Biotin transporter BIOY 27.4 50 0.0017 22.4 2.9 30 5-34 93-122 (198)
75 1oqw_A Fimbrial protein; type 27.2 96 0.0033 18.8 4.0 22 10-31 7-28 (144)
76 2rdd_B UPF0092 membrane protei 27.2 40 0.0014 17.1 1.9 6 26-31 17-22 (37)
77 3aqp_A Probable secdf protein- 26.9 99 0.0034 24.2 4.9 25 8-32 699-723 (741)
78 3arc_J Photosystem II reaction 26.2 85 0.0029 17.0 3.5 15 4-18 9-23 (40)
79 3arc_H Photosystem II reaction 26.0 94 0.0032 18.4 3.6 27 4-30 22-48 (65)
80 2ipb_A PHON protein, class A n 24.2 46 0.0016 21.9 2.2 15 10-24 182-196 (230)
81 2j7a_C Cytochrome C quinol deh 23.7 20 0.00069 22.5 0.4 12 9-20 15-26 (159)
82 2nrg_A Intrinsic membrane prot 23.5 1.3E+02 0.0044 18.5 4.0 9 43-51 57-65 (82)
83 1d2t_A Acid phosphatase; all a 23.2 62 0.0021 21.3 2.8 14 10-23 194-207 (231)
84 2y69_D Cytochrome C oxidase su 23.1 1.2E+02 0.004 20.6 4.1 18 8-25 101-118 (169)
85 1vf5_B Subunit IV; photosynthe 22.4 62 0.0021 21.3 2.6 19 13-31 96-114 (160)
86 2hi2_A Fimbrial protein; type 21.8 65 0.0022 19.7 2.5 22 10-31 7-28 (158)
87 4hb9_A Similarities with proba 20.3 11 0.00037 24.9 -1.5 15 10-24 6-20 (412)
No 1
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=99.65 E-value=1.9e-17 Score=87.32 Aligned_cols=28 Identities=57% Similarity=0.894 Sum_probs=25.9
Q ss_pred HHHhcCCCcccccCCCCCCCCCccccCCcccccC
Q psy1892 31 RMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64 (64)
Q Consensus 31 r~rKKdegsY~leE~K~~~~~~~y~k~~~~efya 64 (64)
||||||||||+|||+ ++|+|++|+||||
T Consensus 1 RmrKKDEGSY~Lde~------p~Y~k~~~~EfYA 28 (28)
T 1ejp_A 1 RMKKKDEGSYDLGKK------PIYKKAPTNEFYA 28 (28)
T ss_dssp CCSCCCCCCCCCCSC------CCCCCCCCCCSCC
T ss_pred CcccccccccccCCC------cccccCCcccccC
Confidence 689999999999996 3799999999998
No 2
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=98.31 E-value=6.4e-07 Score=48.84 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=22.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 3 IPLATSTVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ailLIlfli~r 31 (64)
.+++.+|.|||+|||.+++++|+..++|.
T Consensus 5 ~~~ls~GaIAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 5 SRGLTGGEIVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceeeeehHHHHHHHHHHHHHHH
Confidence 45788999999999999986666555444
No 3
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=97.66 E-value=3.7e-05 Score=40.87 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
++..|.|||+|+|-+++++++..++|.++|
T Consensus 3 ~L~~gaIaGIVvgdi~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 3 TVSPGVLAGIVVGDLVLTVLIALAVYFLGR 32 (33)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCcceEEeEeHHHHHHHHHHHHHHhheec
Confidence 567899999999999999999988887654
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=97.44 E-value=0.00026 Score=39.83 Aligned_cols=14 Identities=50% Similarity=0.489 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCA 21 (64)
Q Consensus 8 ag~IaG~VvGlv~a 21 (64)
...|||+|||+++.
T Consensus 11 ~~~Ia~~vVGvll~ 24 (44)
T 2jwa_A 11 LTSIISAVVGILLV 24 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHH
Confidence 45677778886554
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=97.34 E-value=0.00012 Score=39.77 Aligned_cols=28 Identities=18% Similarity=0.142 Sum_probs=22.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 3 IPLATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
.+|.++|++.|.|+|+++-+.+++|+++
T Consensus 9 s~GaIAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCceeeeehHHHHHHHHHHHHHHHHee
Confidence 3689999999999999987777766554
No 6
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=97.31 E-value=0.00045 Score=38.57 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=29.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 1 MTIPLATSTVIGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 1 ~~~~~~~ag~IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
|++| ++..+|-|+.+|++-.+|+|-+.+.|++||
T Consensus 7 fs~p-~i~lII~~vmaGiIG~IllI~y~I~rl~Kk 40 (40)
T 1afo_A 7 FSEP-EITLIIFGVMAGVIGTILLISYGIRRLIKK 40 (40)
T ss_dssp SSCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6778 777888888888888899999999998886
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=97.18 E-value=0.00049 Score=38.62 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q psy1892 9 TVIGGAVVG 17 (64)
Q Consensus 9 g~IaG~VvG 17 (64)
+.||+.|||
T Consensus 10 ~aIA~gVVg 18 (44)
T 2l2t_A 10 PLIAAGVIG 18 (44)
T ss_dssp HHHHHHHHH
T ss_pred ceEEEeehH
Confidence 445555555
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=97.17 E-value=0.00086 Score=37.62 Aligned_cols=33 Identities=12% Similarity=0.012 Sum_probs=16.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 3 IPLATSTVIGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
+++.+|+-+.|.+++++..+++++| .||+|++.
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~-~~RRRr~~ 40 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAV-YVRRKSIK 40 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHH-HHHTTCSS
T ss_pred CcceEEEeehHHHHHHHHHHHHHHH-Hhhhhhhh
Confidence 4455555555555555544444444 44444433
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=96.68 E-value=0.0011 Score=37.02 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRMRKKDEG 38 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~rKKdeg 38 (64)
+.||+.|||-++++++|.+.+|-+.||...
T Consensus 11 ~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ceEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 457777777777777888999999998654
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=96.54 E-value=0.00068 Score=41.26 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVMFIV 29 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli 29 (64)
.+++.|++.|+++..|+++++|
T Consensus 11 ~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4555566555555444444444
No 11
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=96.18 E-value=0.0013 Score=34.72 Aligned_cols=16 Identities=38% Similarity=0.698 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAI 22 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ai 22 (64)
++++++|+++|+++-+
T Consensus 12 ~~~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 12 NLAVIGGVAVGVVLLL 27 (41)
T ss_dssp STHHHHHHHHHHHHHH
T ss_pred eEEEEeehhHHHHHHH
Confidence 3456666666666533
No 12
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=94.79 E-value=0.045 Score=29.94 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r 31 (64)
....+|.|.|+|.++.+=++++++||
T Consensus 7 ~n~~~Iv~gvi~~ivliGl~lLliwk 32 (43)
T 2k9j_B 7 PDILVVLLSVMGAILLIGLAALLIWK 32 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEeehHHHHHHHHHHHHHHHHHHHH
Confidence 34445544444444444444555555
No 13
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=94.33 E-value=0.011 Score=35.79 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALE 43 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlfli~r~rKKdegsY~le 43 (64)
++..|+|+|+|.--++.+++.-+++.-..||+-.+++-|
T Consensus 12 ~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE 50 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEE 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777664444444444444444445555555543
No 14
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=93.60 E-value=0.14 Score=26.87 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=20.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 3 IPLATSTVIGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ailLIlfl 28 (64)
.+|.++|+|.|-+++.++-.+++.|+
T Consensus 5 ~~gaIaGIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 5 SPGVLAGIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeEeHHHHHHHHHHHHHHhhe
Confidence 57899999999999998666666553
No 15
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=93.58 E-value=0.013 Score=42.10 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=0.0
Q ss_pred HHHHHHH-HHhc--CCCccccc
Q psy1892 25 VMFIVYR-MRKK--DEGSYALE 43 (64)
Q Consensus 25 Ilfli~r-~rKK--degsY~le 43 (64)
+.+++|| +|+. ..|+|..-
T Consensus 303 ~~~~~~~~k~~~~~~~~~~~~~ 324 (348)
T 1s7q_A 303 VAFVMKMRRRNTGGKGGDYALA 324 (348)
T ss_dssp ----------------------
T ss_pred EEEEEEEEEecCCCCCCCcccC
Confidence 4467787 3332 23566543
No 16
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=92.20 E-value=0.44 Score=27.41 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r 31 (64)
+|.+.|+|-++-..++.+++|+
T Consensus 14 iIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 14 WVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444445555555
No 17
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=91.77 E-value=0.26 Score=28.55 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r 31 (64)
+|.+.++|-++-..+|.+++|+
T Consensus 11 iIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 11 VILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333344444555555
No 18
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=90.12 E-value=0.26 Score=26.36 Aligned_cols=12 Identities=42% Similarity=0.448 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCA 21 (64)
Q Consensus 10 ~IaG~VvGlv~a 21 (64)
.||..|||+++.
T Consensus 9 sIaagVvglll~ 20 (35)
T 1iij_A 9 FIIATVVGVLLF 20 (35)
T ss_dssp HHHHHHHHHHHH
T ss_pred EeHHHHHHHHHH
Confidence 466666775444
No 19
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=88.21 E-value=0.092 Score=36.69 Aligned_cols=18 Identities=11% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILV 24 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailL 24 (64)
+..+|+|+++||++.+++
T Consensus 283 ~~~i~~~vi~~l~ll~~~ 300 (315)
T 1cd1_A 283 VGLIVFIVLIMLVVVGAV 300 (315)
T ss_dssp ------------------
T ss_pred cceeehhHHHHHHHHHHH
Confidence 344455666555544444
No 20
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=87.58 E-value=0.96 Score=27.54 Aligned_cols=55 Identities=31% Similarity=0.445 Sum_probs=27.4
Q ss_pred CcchhHHHHHHHHHHHHHHHH-HHHHHHH-HHHHhcCCCcc-----cccCCCCCCCCCccccCC
Q psy1892 2 TIPLATSTVIGGAVVGLLCAI-LVVMFIV-YRMRKKDEGSY-----ALEEPKRSPASNSYMKNS 58 (64)
Q Consensus 2 ~~~~~~ag~IaG~VvGlv~ai-lLIlfli-~r~rKKdegsY-----~leE~K~~~~~~~y~k~~ 58 (64)
++|-++ ++-|+++|+++-+ +-|++.+ ||.|+|....- -|.|.|--.-+..+||+.
T Consensus 6 ~~p~~L--ivlGg~~~lll~~glcI~ccvkcrhRrrqAeRMSQikrlLsEKKTCQC~hr~qk~~ 67 (70)
T 2klu_A 6 RGSMAL--IVLGGVAGLLLFIGLGIFFSVRSRHRRRQAERMSQIKRLLSEKKTSQSPHRFQKTH 67 (70)
T ss_dssp CCSSHH--HHHHHHHHHHHHHHHHHHHHHHSSCCSSSCTTSSHHHHHHHSSSCCCCCCCCCCCC
T ss_pred hhHHHH--HHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCcHHHhhcc
Confidence 456666 5666666766554 4444466 33333332221 245655332234477763
No 21
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=86.19 E-value=0.14 Score=40.79 Aligned_cols=25 Identities=8% Similarity=0.101 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfl 28 (64)
.++..++|.++++|+++.+++++++
T Consensus 700 ~~l~~~aii~il~~~~~ll~~~ll~ 724 (880)
T 1q55_A 700 GGFDLPIILVILGSVLALLILFLLL 724 (880)
T ss_dssp -------------------------
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777766654444443
No 22
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=84.96 E-value=0.26 Score=26.35 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=14.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
|.+.+|+++ +..++...+.+.+++.
T Consensus 8 ~sIaagVvg--lll~vii~l~~~~~iR 32 (35)
T 1iij_A 8 TFIIATVVG--VLLFLILVVVVGILIK 32 (35)
T ss_dssp HHHHHHHHH--HHHHHHHTTTTTHHHH
T ss_pred cEeHHHHHH--HHHHHHHHHHhheEEe
Confidence 445566665 5555555555555554
No 23
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=82.88 E-value=0.78 Score=27.39 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
+-.+.++|+++|=+++.+++.+.+|.+-|+
T Consensus 4 Ld~~tvaGIIv~DIi~TllLal~VY~~A~~ 33 (63)
T 2l35_A 4 VSPGVLAGIVVGDLVLTVLIALAVYFLGRL 33 (63)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred ccchheehhHHHHHHHHHHHHHHHHhhccc
Confidence 345778999999999999999999986654
No 24
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=82.32 E-value=0.3 Score=26.88 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1892 11 IGGAVVGLLCAILVVMFIVYRMRKKD 36 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r~rKKd 36 (64)
++|+++-++.-++.++.+++.++||.
T Consensus 11 l~avlal~vi~iisLIiLi~~w~qKP 36 (39)
T 2l6w_A 11 ISAILALVVLTIISLIILIMLWQKKP 36 (39)
Confidence 34444444444333333333335554
No 25
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=78.65 E-value=2.6 Score=22.94 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r 31 (64)
+|.+.++|-++-..++.+++|+
T Consensus 12 iIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 12 WVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433444445555665
No 26
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=77.63 E-value=4.9 Score=22.08 Aligned_cols=29 Identities=17% Similarity=0.435 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q psy1892 6 ATSTVIGGAVVGLLCAILVV-MFIVYRMRK 34 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLI-lfli~r~rK 34 (64)
..-.+|+.++.|++++++-. +|+-|..|+
T Consensus 7 fs~p~i~lII~~vmaGiIG~IllI~y~I~r 36 (40)
T 1afo_A 7 FSEPEITLIIFGVMAGVIGTILLISYGIRR 36 (40)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457899999999996654 555555665
No 27
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=74.57 E-value=3.8 Score=24.62 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCAILVVMFIV 29 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli 29 (64)
|+|.+++.|+.++-|+.++
T Consensus 19 igGLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHHHH
Confidence 4555544444443333333
No 28
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=71.40 E-value=9.8 Score=20.38 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=10.4
Q ss_pred hhHHHHHHHHH-HHHHHH
Q psy1892 5 LATSTVIGGAV-VGLLCA 21 (64)
Q Consensus 5 ~~~ag~IaG~V-vGlv~a 21 (64)
.+..|+|+|+| +|+++-
T Consensus 11 ~Iv~gvi~~ivliGl~lL 28 (43)
T 2k9j_B 11 VVLLSVMGAILLIGLAAL 28 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHH
Confidence 35568888866 455443
No 29
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=71.12 E-value=3.9 Score=30.75 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEG 38 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~r~rKKdeg 38 (64)
+.+++-.+-+++.|+.-.+++|-+.+.|.+||++-
T Consensus 547 ~~~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (593)
T 2xq2_A 547 DAEITLIIFGVMAGVIGTILLISYGIKKLIKASYK 581 (593)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455556666666666688888888888887654
No 30
>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical membrane antigen 1, hypothetical protein, immunoglobulin domain; 2.9A {Plasmodium falciparum} SCOP: g.61.1.1 PDB: 1hn6_A
Probab=70.45 E-value=0.89 Score=36.48 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCccccCCc
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSN 59 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~rKKdegsY~leE~K~~~~~~~y~k~~~ 59 (64)
-+|.++.+|+++.+++.+|.+|| +|++..+||-=..+ ..|.|+.+
T Consensus 514 ~ii~~~~~~~~~~a~~~~~~~~k-~~~~~~~ydk~~~~-----~~y~~~~~ 558 (581)
T 2j5l_A 514 KIIIASSAAVAVLATILMVYLYK-RKGNAEKYDKMDQP-----QHYGKSTS 558 (581)
T ss_dssp ---------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-cCCCccchhhhcch-----hccCCCCc
Confidence 34567777777777776666552 33344466643332 34777653
No 31
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=68.77 E-value=9.3 Score=21.43 Aligned_cols=25 Identities=48% Similarity=0.774 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
-|+|.+||++. ++++.=++|+|-+|
T Consensus 21 si~~~IVGaLv-il~VAGLiysm~RK 45 (46)
T 1pfi_A 21 AIGGYIVGALV-ILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhc
Confidence 36777777654 44445566775544
No 32
>2wy3_A MHC class I polypeptide-related sequence B; immune system-viral protein complex, immune response, innate immunity, structural mimicry; HET: NAG PEU; 1.80A {Homo sapiens} PDB: 1je6_A 1hyr_C 1b3j_A*
Probab=67.47 E-value=1.1 Score=31.28 Aligned_cols=7 Identities=14% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHH
Q psy1892 13 GAVVGLL 19 (64)
Q Consensus 13 G~VvGlv 19 (64)
|+|+||+
T Consensus 293 g~~~gl~ 299 (319)
T 2wy3_A 293 AAMPCFV 299 (319)
T ss_dssp -------
T ss_pred hhhhhHH
Confidence 6666654
No 33
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=66.83 E-value=11 Score=20.57 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
+|+|.+| +|-+|=--|+.||-|+
T Consensus 12 ~i~gl~v--if~~lg~tflywrgrr 34 (40)
T 2l9u_A 12 VIAGLVV--IFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHhCceeEEEcccc
Confidence 4444433 3334445688898444
No 34
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=66.37 E-value=4.2 Score=24.56 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
--|++-|+=+|..+-.+++++++-
T Consensus 20 ~~~I~~G~~iGAs~llliil~llt 43 (80)
T 2k9p_A 20 TQAILFGVRSGAAALTLIVVWITS 43 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666777776555555555554
No 35
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=65.86 E-value=5.9 Score=21.21 Aligned_cols=18 Identities=39% Similarity=0.598 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 13 GAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~ 30 (64)
|+++-++.-.|.+++++|
T Consensus 10 Gvl~LLviV~LgV~LI~f 27 (35)
T 2lk9_A 10 GILVLLIIVILGVPLIIF 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcchheEE
Confidence 444443333444444444
No 36
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=64.76 E-value=1.4 Score=30.71 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCAILVVMFI 28 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfl 28 (64)
+.++|+|++.+++||+.+
T Consensus 283 ~~~i~~~vi~~l~ll~~~ 300 (315)
T 1cd1_A 283 VGLIVFIVLIMLVVVGAV 300 (315)
T ss_dssp ------------------
T ss_pred cceeehhHHHHHHHHHHH
Confidence 455666666554444443
No 37
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=63.41 E-value=1.5 Score=34.98 Aligned_cols=26 Identities=12% Similarity=0.285 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
++.+.|+++|+++-++ .+||++++..
T Consensus 704 ~~aii~il~~~~~ll~-~~ll~~~~~~ 729 (880)
T 1q55_A 704 LPIILVILGSVLALLI-LFLLLLLFLK 729 (880)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhhh
Confidence 4566777777766444 4444444443
No 38
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=63.39 E-value=12 Score=20.22 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
+.|+|-|.+--.+++.++-.++=|
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay~Qy 29 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHH
Confidence 444444444444444544444444
No 39
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=63.24 E-value=9.9 Score=21.75 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCA 21 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~a 21 (64)
++.++++|.++=.++.
T Consensus 12 Ii~svl~GLLLL~Lii 27 (54)
T 2l8s_A 12 ILLSAFAGLLLLMLLI 27 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777776544433
No 40
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=62.63 E-value=14 Score=20.98 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLC 20 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ 20 (64)
++.++++|.++=.++
T Consensus 15 Ii~svl~GLllL~li 29 (54)
T 2knc_A 15 VLVGVLGGLLLLTIL 29 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666776654433
No 41
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=59.05 E-value=10 Score=26.58 Aligned_cols=14 Identities=29% Similarity=0.762 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHhc
Q psy1892 22 ILVVMFIVYRMRKK 35 (64)
Q Consensus 22 ilLIlfli~r~rKK 35 (64)
+.++.+++|++++|
T Consensus 456 ~~~i~~~~~~~~~~ 469 (511)
T 4djk_A 456 VLALPFILYAVHDR 469 (511)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhhh
Confidence 33444555553433
No 42
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=58.61 E-value=16 Score=22.15 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCAILVVMFIV 29 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli 29 (64)
|+|.+++.|+.++-|+.++
T Consensus 18 iGGLifA~vLfi~GI~iil 36 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVL 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 4455544444433333333
No 43
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=56.68 E-value=20 Score=18.84 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHH
Q psy1892 10 VIGGAVVGLLCAILVVM--FIVYR 31 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIl--fli~r 31 (64)
.|.|.+|.++.++++-. |+=||
T Consensus 7 ~ivalivalIiaIVVWtiv~ieYr 30 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIVIIEGR 30 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655443 44444
No 44
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=54.95 E-value=19 Score=19.43 Aligned_cols=14 Identities=36% Similarity=0.207 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLL 19 (64)
Q Consensus 6 ~~ag~IaG~VvGlv 19 (64)
.+..+++|+||-++
T Consensus 9 Fl~Sl~aG~vvvv~ 22 (39)
T 3arc_X 9 FFIGLLSGAVVLGL 22 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555666655444
No 45
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=54.95 E-value=17 Score=18.36 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILV 24 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailL 24 (64)
+.++.-||.|||-+-+.++
T Consensus 3 v~ga~AAGaVvGglGgy~l 21 (27)
T 2lbg_A 3 MAGAAAAGAVVGGLGGYML 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhHHHHH
Confidence 5677788888887766443
No 46
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=54.60 E-value=9.3 Score=26.63 Aligned_cols=16 Identities=19% Similarity=0.690 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1892 15 VVGLLCAILVVMFIVY 30 (64)
Q Consensus 15 VvGlv~ailLIlfli~ 30 (64)
++|+++++.+++++++
T Consensus 318 ~l~~m~~~~~~~~~~f 333 (339)
T 4ev6_A 318 VMALMVVIIMIFVYIF 333 (339)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555544444
No 47
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A {Nitrosomonas europaea} SCOP: a.138.1.3
Probab=53.13 E-value=2.8 Score=32.18 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1892 12 GGAVVGLLCAILVVMFIVYRMRKKDE 37 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r~rKKde 37 (64)
+|+.++++++ ..|.+++||.|+|.|
T Consensus 521 ~~~~~~~~~~-~~~~~~~~~~~~~~~ 545 (546)
T 1fgj_A 521 GGLGGGMLLA-GALALIGWRKRKQTR 545 (546)
T ss_dssp --------------------------
T ss_pred cchhHHHHHH-HHHHHHHHHhhhhhc
Confidence 3444444444 334455666666654
No 48
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=52.81 E-value=8.3 Score=23.50 Aligned_cols=21 Identities=10% Similarity=0.357 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1892 11 IGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 11 IaG~VvGlv~ailLIlfli~r 31 (64)
|+|.+++.|+.++-|+.++.+
T Consensus 21 igGLifA~vLfi~GI~iilS~ 41 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIIILLAG 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT
T ss_pred eccchhHHHHHHHHHHHHHcC
Confidence 456555555554444444443
No 49
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=48.15 E-value=26 Score=19.85 Aligned_cols=14 Identities=36% Similarity=0.207 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLL 19 (64)
Q Consensus 6 ~~ag~IaG~VvGlv 19 (64)
.+..+++|+||-++
T Consensus 19 Fl~SlvaG~vVvv~ 32 (50)
T 3bz1_X 19 FFIGLLSGAVVLGL 32 (50)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455666554444
No 50
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=47.35 E-value=6.4 Score=21.27 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~ 30 (64)
.|+|-|.+--.+++.++..++=|
T Consensus 7 ~GIVlGlipvtl~GLfv~Ay~Qy 29 (37)
T 1vf5_G 7 DGLVLGLVFATLGGLFYAAYQQY 29 (37)
T ss_dssp --CHHHHHHHHHHHHTHHHHHHT
T ss_pred hhHHHhhHHHHHHHHHHHHHHHH
Confidence 34444444434444444444444
No 51
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=43.22 E-value=31 Score=20.51 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
-++++.++++.+++++=++....++++
T Consensus 20 ~i~~a~~lsl~~~~~~k~~v~~pRK~a 46 (73)
T 1v54_I 20 HIVGAFMVSLGFATFYKFAVAEKRKKA 46 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 356666666666665555555444443
No 52
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=41.62 E-value=24 Score=17.21 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAI 22 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ai 22 (64)
+.=.+++..+.|+++++
T Consensus 3 v~E~i~s~ai~Gi~f~l 19 (26)
T 1bts_A 3 VSELLISTAVQGILFAL 19 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34455666666666664
No 53
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=41.05 E-value=60 Score=19.77 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=5.9
Q ss_pred cCCCCCCCCC
Q psy1892 43 EEPKRSPASN 52 (64)
Q Consensus 43 eE~K~~~~~~ 52 (64)
|++|+.|+++
T Consensus 56 E~Sr~aP~P~ 65 (77)
T 2dw3_A 56 IQENQAPAPN 65 (77)
T ss_dssp TTCSSCSSCC
T ss_pred hhcccCCCCc
Confidence 4567776653
No 54
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=36.86 E-value=36 Score=25.00 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred ccccCC
Q psy1892 53 SYMKNS 58 (64)
Q Consensus 53 ~y~k~~ 58 (64)
.+.|++
T Consensus 481 ~~~~~~ 486 (501)
T 2jln_A 481 ANTKEQ 486 (501)
T ss_dssp ------
T ss_pred cchhhc
Confidence 366665
No 55
>1q16_C Cytochrome B-NR, respiratory nitrate reductase 1 gamma chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: f.21.3.1 PDB: 1siw_C* 1y4z_C* 3ir5_C* 3ir6_C* 3ir7_C* 1y5l_C* 1y5i_C* 1y5n_C* 3egw_C*
Probab=36.53 E-value=50 Score=21.64 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 9 TVIGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 9 g~IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
....|-+.|+++-+-+++++++|...|
T Consensus 90 ~~~~~~~~g~~~l~G~~~l~~RR~~~~ 116 (225)
T 1q16_C 90 AMFAGGASGVLCLIGGVLLLKRRLFSP 116 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 556677788888788888888875443
No 56
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=36.43 E-value=80 Score=23.25 Aligned_cols=18 Identities=17% Similarity=0.039 Sum_probs=12.1
Q ss_pred cchhHHHHHHHHHHHHHH
Q psy1892 3 IPLATSTVIGGAVVGLLC 20 (64)
Q Consensus 3 ~~~~~ag~IaG~VvGlv~ 20 (64)
..|+++|+++|.++.+++
T Consensus 424 ~~gA~~g~i~G~~~~~~~ 441 (530)
T 3dh4_A 424 SKGAIIGVVASIPFALFL 441 (530)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356777777777776653
No 57
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=33.92 E-value=95 Score=24.73 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVMFIV 29 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli 29 (64)
..++.|++++.+++++++-.++
T Consensus 1005 ~~~~~Gl~~s~~~tl~~~P~l~ 1026 (1057)
T 4dx5_A 1005 TGVMGGMVTATVLAIFFVPVFF 1026 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665554333
No 58
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=32.53 E-value=64 Score=21.32 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVM 26 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIl 26 (64)
..+++|+++++.+++++.+
T Consensus 79 K~v~g~v~~~i~~s~~~f~ 97 (147)
T 1v54_D 79 KTVVGAAMFFIGFTALLLI 97 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3456666655555544433
No 59
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=31.58 E-value=49 Score=19.06 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1892 14 AVVGLLCAILVVMFIV 29 (64)
Q Consensus 14 ~VvGlv~ailLIlfli 29 (64)
.++++++++++..+++
T Consensus 168 ~~~~~~~~~~~~~~~v 183 (186)
T 2kse_A 168 WLVALPIMLIIMMVLL 183 (186)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333333333333
No 60
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=30.89 E-value=55 Score=22.79 Aligned_cols=12 Identities=25% Similarity=0.855 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhc
Q psy1892 24 VVMFIVYRMRKK 35 (64)
Q Consensus 24 LIlfli~r~rKK 35 (64)
++++.++|+||+
T Consensus 50 ll~~~~~r~r~~ 61 (262)
T 2gsm_B 50 LILYAVWRFHEK 61 (262)
T ss_dssp HHHHHHHHSBTT
T ss_pred HHHHHHHHHhcc
Confidence 344555565654
No 61
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=30.50 E-value=4.8 Score=23.01 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLCAILV 24 (64)
Q Consensus 9 g~IaG~VvGlv~ailL 24 (64)
.+|+|..+|+.+|..|
T Consensus 6 ~IIGaGpaGL~aA~~L 21 (336)
T 3kkj_A 6 AIIGTGIAGLSAAQAL 21 (336)
T ss_dssp EEECCSHHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHH
Confidence 3567788888888665
No 62
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=30.08 E-value=44 Score=23.72 Aligned_cols=27 Identities=7% Similarity=0.239 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1892 12 GGAVVGLLCAILVVMFIVYRMRKKDEG 38 (64)
Q Consensus 12 aG~VvGlv~ailLIlfli~r~rKKdeg 38 (64)
.|...++++.++..+++.+.+|++.++
T Consensus 207 ~~~p~~li~l~~~~~~l~~~~~~~~~~ 233 (449)
T 4f35_D 207 FGLPTAMMMLPMAIAILYFLLKPTLNG 233 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC------
T ss_pred hcCchHHHHHHHHHHHHHHHhcccccc
Confidence 344444444443333333334444343
No 63
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=30.05 E-value=57 Score=17.01 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~ailLIlfli~r 31 (64)
++.-+||=++||++ |.++=-|.
T Consensus 4 i~~~IIaPivVGvv----l~L~d~WL 25 (33)
T 2kv5_A 4 LMSLVIAPIFVGLV----LEMISRVL 25 (33)
T ss_dssp THHHHHHHHHHHHH----HHHHHHHT
T ss_pred HHHHHHHHHHHHHH----HHHHHHHH
Confidence 34556777777765 34444453
No 64
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=29.75 E-value=75 Score=17.56 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRMRKK 35 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~rKK 35 (64)
.++||.+-||++.- -+=+-.-||+-||
T Consensus 16 i~~iaaagvgvlal-~iglsaaw~ya~r 42 (46)
T 1hgv_A 16 IQAIAAAGVGVLAL-AIGLSAAWKYAKR 42 (46)
T ss_dssp THHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHccchHHHH-HHhHHHHHHHHHH
Confidence 46788888887643 3334456776554
No 65
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=29.69 E-value=79 Score=19.57 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r 31 (64)
+|.=+++|++.++.+-.|.-|+
T Consensus 7 lvviaIigiLaaia~p~~~~~~ 28 (151)
T 3sok_A 7 MIVVAIIGILAAFAIPAYNDYI 28 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777776666665554
No 66
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=28.91 E-value=73 Score=22.76 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHH-HHhcCCCcccccCCC
Q psy1892 18 LLCAILVVMFIVYR-MRKKDEGSYALEEPK 46 (64)
Q Consensus 18 lv~ailLIlfli~r-~rKKdegsY~leE~K 46 (64)
-+|=|++..+++|. +-.|.|| |-||...
T Consensus 17 ~~fw~ffa~li~yl~~e~~reg-ypl~~~~ 45 (259)
T 1eys_H 17 WAFWLFFFGLIIYLRREDKREG-YPLDSNR 45 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSS-CSCBC--
T ss_pred HHHHHHHHHHHHHHhccccccC-CCcccCc
Confidence 34456666666666 5667888 7786543
No 67
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=28.89 E-value=60 Score=25.31 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 7 TSTVIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 7 ~ag~IaG~VvGlv~ailLIlfli~r 31 (64)
++|.-.=+++|+++.++..++...|
T Consensus 414 ~GG~~~~~~i~~~~~~~v~~~~~~r 438 (442)
T 3j0c_A 414 LGGSAVIIIIGLVLATIVAMYVLTN 438 (442)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhhhhhhh
Confidence 3444444556666665555555554
No 68
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=28.81 E-value=50 Score=21.30 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAI 22 (64)
Q Consensus 8 ag~IaG~VvGlv~ai 22 (64)
.|=++|.++|++++.
T Consensus 167 ~aHlgG~l~G~l~~~ 181 (196)
T 2nr9_A 167 AAHISGLIVGLIWGF 181 (196)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344566666666553
No 69
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=28.47 E-value=60 Score=23.73 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHH
Q psy1892 6 ATSTVIGGAVVGLLCA 21 (64)
Q Consensus 6 ~~ag~IaG~VvGlv~a 21 (64)
+..|++-|+++|++.+
T Consensus 383 ~~~~~~~g~~~~~~~~ 398 (473)
T 2zy9_A 383 MGVGLLLGLTLSFLLV 398 (473)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 70
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=28.26 E-value=14 Score=26.04 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy1892 15 VVGLLCAILVVMFIV 29 (64)
Q Consensus 15 VvGlv~ailLIlfli 29 (64)
++|+.+++.++++++
T Consensus 342 ~l~~m~~i~~~~~~~ 356 (363)
T 2iub_A 342 VLAVMGVIAVIMVVY 356 (363)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 71
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=27.82 E-value=69 Score=16.49 Aligned_cols=7 Identities=57% Similarity=0.800 Sum_probs=3.6
Q ss_pred HHHHHHH
Q psy1892 10 VIGGAVV 16 (64)
Q Consensus 10 ~IaG~Vv 16 (64)
+|||.|.
T Consensus 8 viaglva 14 (32)
T 2lx0_A 8 VIAGLVA 14 (32)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555544
No 72
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=27.68 E-value=1.1e+02 Score=22.04 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHH-HHhcCCCcccccCC
Q psy1892 18 LLCAILVVMFIVYR-MRKKDEGSYALEEP 45 (64)
Q Consensus 18 lv~ailLIlfli~r-~rKKdegsY~leE~ 45 (64)
-+|=|++..+++|. +-.|.|| |-||..
T Consensus 18 ~~Fw~ffa~Li~yL~~E~~REG-YPl~~~ 45 (260)
T 1rzh_H 18 YSFWIFLAGLIYYLQTENMREG-YPLENE 45 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSS-CSCBCT
T ss_pred HHHHHHHHHHHHHHhccccccC-CccccC
Confidence 34446666666666 5667888 777654
No 73
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=27.54 E-value=13 Score=25.98 Aligned_cols=12 Identities=25% Similarity=0.755 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q psy1892 20 CAILVVMFIVYR 31 (64)
Q Consensus 20 ~ailLIlfli~r 31 (64)
+++++|++++||
T Consensus 233 ~~~~~~~~~~~~ 244 (252)
T 2w1k_A 233 LAFLGILFVLWK 244 (252)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 334444444454
No 74
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=27.42 E-value=50 Score=22.39 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1892 5 LATSTVIGGAVVGLLCAILVVMFIVYRMRK 34 (64)
Q Consensus 5 ~~~ag~IaG~VvGlv~ailLIlfli~r~rK 34 (64)
+.+.|--+|-.+|.+++..++-++..|.++
T Consensus 93 ~~l~gPTgGYLiGF~~aA~v~G~l~~~~~~ 122 (198)
T 4dve_A 93 ASFLGPSGGYRIAWLFTPFLIGFFLKKLKI 122 (198)
T ss_dssp GGGGSTTHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred hHHhcchhHHHHHHHHHHHHHHHHHHHccc
Confidence 445566678888888888888888776443
No 75
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=27.18 E-value=96 Score=18.79 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r 31 (64)
+|+=+++|++.++.+-.|.=|+
T Consensus 7 livi~Ii~il~~ia~p~~~~~~ 28 (144)
T 1oqw_A 7 MIVVAIIGILAAIAIPQYQNYV 28 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777776666665554
No 76
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=27.16 E-value=40 Score=17.05 Aligned_cols=6 Identities=33% Similarity=0.949 Sum_probs=3.7
Q ss_pred HHHHHH
Q psy1892 26 MFIVYR 31 (64)
Q Consensus 26 lfli~r 31 (64)
.|++.|
T Consensus 17 YFl~iR 22 (37)
T 2rdd_B 17 YFMILR 22 (37)
T ss_dssp HHHTHH
T ss_pred HHHHhh
Confidence 466666
No 77
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=26.89 E-value=99 Score=24.18 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVVMFIVYRM 32 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLIlfli~r~ 32 (64)
.+++.|++++.+..++++--++..+
T Consensus 699 ~~~~~Gl~~~~~~sl~l~Pal~~~~ 723 (741)
T 3aqp_A 699 LAIFVGIFVGTYSSIYVVSALVVAW 723 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777766654444433
No 78
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=26.18 E-value=85 Score=17.00 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=8.2
Q ss_pred chhHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGL 18 (64)
Q Consensus 4 ~~~~ag~IaG~VvGl 18 (64)
|--+.|.++|+.|--
T Consensus 9 PLWlvgtv~G~~vi~ 23 (40)
T 3arc_J 9 PLWIVATVAGMGVIV 23 (40)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cEEeeeeehhhhhhh
Confidence 445566666655433
No 79
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=26.03 E-value=94 Score=18.36 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=17.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1892 4 PLATSTVIGGAVVGLLCAILVVMFIVY 30 (64)
Q Consensus 4 ~~~~ag~IaG~VvGlv~ailLIlfli~ 30 (64)
||--...+-|+..++.+-.++|++-+|
T Consensus 22 PGWGTtplMgv~m~Lf~vFl~iiLeIY 48 (65)
T 3arc_H 22 PGWGTTPLMAVFMGLFLVFLLIILEIY 48 (65)
T ss_dssp STTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccChhHHHHHHHHHHHHHHHHHHHh
Confidence 455555666777776666777777776
No 80
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=24.21 E-value=46 Score=21.89 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILV 24 (64)
Q Consensus 10 ~IaG~VvGlv~ailL 24 (64)
+++|.++|++++.++
T Consensus 182 VlaG~~lG~~~~~~~ 196 (230)
T 2ipb_A 182 VDAGRYVGAVEFARL 196 (230)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666665443
No 81
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=23.70 E-value=20 Score=22.50 Aligned_cols=12 Identities=42% Similarity=0.916 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q psy1892 9 TVIGGAVVGLLC 20 (64)
Q Consensus 9 g~IaG~VvGlv~ 20 (64)
-+++|+++|+++
T Consensus 15 ~~~~g~~~g~~~ 26 (159)
T 2j7a_C 15 LVLGGATLGVVA 26 (159)
T ss_dssp CSTTTHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555555554
No 82
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=23.46 E-value=1.3e+02 Score=18.47 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=5.1
Q ss_pred cCCCCCCCC
Q psy1892 43 EEPKRSPAS 51 (64)
Q Consensus 43 eE~K~~~~~ 51 (64)
|++||.|++
T Consensus 57 E~Sr~aP~P 65 (82)
T 2nrg_A 57 IQENQAPAP 65 (82)
T ss_dssp TTTTCCSSS
T ss_pred hhcccCCCC
Confidence 346666654
No 83
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=23.17 E-value=62 Score=21.29 Aligned_cols=14 Identities=29% Similarity=0.195 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAIL 23 (64)
Q Consensus 10 ~IaG~VvGlv~ail 23 (64)
+++|.++|.+++.+
T Consensus 194 VlaG~~lG~~~~~~ 207 (231)
T 1d2t_A 194 VDAARVVGSAVVAT 207 (231)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666543
No 84
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=23.09 E-value=1.2e+02 Score=20.57 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1892 8 STVIGGAVVGLLCAILVV 25 (64)
Q Consensus 8 ag~IaG~VvGlv~ailLI 25 (64)
..+++|+++++.+++++.
T Consensus 101 K~V~ggv~~~i~~s~~~f 118 (169)
T 2y69_D 101 KTVVGAAMFFIGFTALLL 118 (169)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345666655555554443
No 85
>1vf5_B Subunit IV; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.32.1.1 PDB: 2d2c_B* 2e74_B* 2e75_B* 2e76_B* 2zt9_B* 1q90_D*
Probab=22.41 E-value=62 Score=21.29 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1892 13 GAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 13 G~VvGlv~ailLIlfli~r 31 (64)
|+|+.++.++++++++=|.
T Consensus 96 gGVial~~siliL~~lP~l 114 (160)
T 1vf5_B 96 LGVLLMASVPLGLILVPFI 114 (160)
T ss_dssp HHHHHHHHHHHHHHTHHHH
T ss_pred HhHHHHHHHHHHHHHHHHh
Confidence 3455566666666666553
No 86
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=21.75 E-value=65 Score=19.72 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILVVMFIVYR 31 (64)
Q Consensus 10 ~IaG~VvGlv~ailLIlfli~r 31 (64)
+|+=+++|++.++.+-.+.-++
T Consensus 7 ~vvi~ii~il~~~~~p~~~~~~ 28 (158)
T 2hi2_A 7 MIVIAIVGILAAVALPAYQDYT 28 (158)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777776665554444
No 87
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=20.26 E-value=11 Score=24.90 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy1892 10 VIGGAVVGLLCAILV 24 (64)
Q Consensus 10 ~IaG~VvGlv~ailL 24 (64)
||+|..+|+.+|+.|
T Consensus 6 IVGaGpaGl~~A~~L 20 (412)
T 4hb9_A 6 IIGAGIGGTCLAHGL 20 (412)
T ss_dssp EECCSHHHHHHHHHH
T ss_pred EECcCHHHHHHHHHH
Confidence 567778888888765
Done!