Your job contains 1 sequence.
>psy1892
MTIPLATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNR
EFYA
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1892
(64 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0010415 - symbol:Sdc "Syndecan" species:7227 "Dros... 256 8.4e-22 1
WB|WBGene00004749 - symbol:sdn-1 species:6239 "Caenorhabd... 167 2.7e-12 1
UNIPROTKB|F1NV24 - symbol:SDC1 "Syndecan" species:9031 "G... 149 3.0e-11 2
UNIPROTKB|F1NEY0 - symbol:SDC2 "Syndecan" species:9031 "G... 153 4.5e-11 1
UNIPROTKB|F1P3L6 - symbol:SDC2 "Syndecan" species:9031 "G... 153 4.5e-11 1
UNIPROTKB|Q58DD4 - symbol:SDC2 "Syndecan-2" species:9913 ... 153 4.5e-11 1
UNIPROTKB|E7ESK6 - symbol:SDC2 "Syndecan" species:9606 "H... 153 4.5e-11 1
UNIPROTKB|E9PBI9 - symbol:SDC2 "Syndecan" species:9606 "H... 153 4.5e-11 1
UNIPROTKB|P34741 - symbol:SDC2 "Syndecan-2" species:9606 ... 153 4.5e-11 1
UNIPROTKB|F1S0L5 - symbol:SDC2 "Syndecan" species:9823 "S... 153 4.5e-11 1
MGI|MGI:1349165 - symbol:Sdc2 "syndecan 2" species:10090 ... 153 4.5e-11 1
RGD|3649 - symbol:Sdc2 "syndecan 2" species:10116 "Rattus... 153 4.5e-11 1
UNIPROTKB|Q6IRK3 - symbol:Sdc2 "Syndecan" species:10116 "... 153 4.5e-11 1
ZFIN|ZDB-GENE-021206-3 - symbol:sdc2 "syndecan 2" species... 149 1.2e-10 1
UNIPROTKB|J9P9D1 - symbol:SDC2 "Syndecan" species:9615 "C... 153 1.4e-10 1
UNIPROTKB|F1SCU4 - symbol:SDC1 "Syndecan" species:9823 "S... 149 3.0e-10 1
UNIPROTKB|E2RT70 - symbol:SDC1 "Syndecan" species:9615 "C... 149 3.9e-10 1
MGI|MGI:1349162 - symbol:Sdc1 "syndecan 1" species:10090 ... 148 5.0e-10 1
RGD|3648 - symbol:Sdc1 "syndecan 1" species:10116 "Rattus... 148 5.1e-10 1
UNIPROTKB|P18827 - symbol:SDC1 "Syndecan-1" species:9606 ... 146 8.4e-10 1
UNIPROTKB|Q08DZ5 - symbol:SDC1 "Syndecan-1" species:9913 ... 146 8.4e-10 1
ZFIN|ZDB-GENE-030131-9021 - symbol:sdc3 "syndecan 3" spec... 147 1.2e-09 1
UNIPROTKB|F1NKM5 - symbol:SDC3 "Syndecan" species:9031 "G... 146 1.5e-09 1
UNIPROTKB|P26261 - symbol:SDC3 "Syndecan-3" species:9031 ... 146 1.5e-09 1
UNIPROTKB|D3DPN2 - symbol:SDC3 "Syndecan" species:9606 "H... 143 3.0e-09 1
UNIPROTKB|F1Q3P6 - symbol:SDC3 "Syndecan" species:9615 "C... 143 3.2e-09 1
UNIPROTKB|F1STL1 - symbol:SDC3 "Syndecan" species:9823 "S... 143 3.6e-09 1
UNIPROTKB|F1MP76 - symbol:SDC3 "Syndecan" species:9913 "B... 143 3.9e-09 1
UNIPROTKB|O75056 - symbol:SDC3 "Syndecan-3" species:9606 ... 143 3.9e-09 1
MGI|MGI:1349163 - symbol:Sdc3 "syndecan 3" species:10090 ... 143 3.9e-09 1
RGD|621486 - symbol:Sdc3 "syndecan 3" species:10116 "Ratt... 143 3.9e-09 1
UNIPROTKB|P33671 - symbol:Sdc3 "Syndecan-3" species:10116... 143 3.9e-09 1
UNIPROTKB|P49416 - symbol:SDC4 "Syndecan-4" species:9031 ... 118 2.6e-07 1
UNIPROTKB|Q8HZJ6 - symbol:SDC4 "Syndecan-4" species:9823 ... 118 2.9e-07 1
UNIPROTKB|E1BKS1 - symbol:SDC4 "Syndecan" species:9913 "B... 117 3.5e-07 1
UNIPROTKB|G3MYP1 - symbol:SDC4 "Syndecan" species:9913 "B... 117 3.7e-07 1
MGI|MGI:1349164 - symbol:Sdc4 "syndecan 4" species:10090 ... 115 6.1e-07 1
RGD|3650 - symbol:Sdc4 "syndecan 4" species:10116 "Rattus... 115 6.6e-07 1
UNIPROTKB|B4E1S6 - symbol:SDC4 "Syndecan" species:9606 "H... 111 1.3e-06 1
UNIPROTKB|P31431 - symbol:SDC4 "Syndecan-4" species:9606 ... 111 1.8e-06 1
UNIPROTKB|J9NZ79 - symbol:SDC4 "Uncharacterized protein" ... 110 2.5e-06 1
ZFIN|ZDB-GENE-061111-1 - symbol:sdc4 "syndecan 4" species... 96 0.00019 1
UNIPROTKB|F1MN62 - symbol:NRXN1 "Neurexin-1-beta" species... 93 0.00052 1
UNIPROTKB|G3MWM9 - symbol:NRXN1 "Neurexin-1-beta" species... 93 0.00061 1
UNIPROTKB|F6RU36 - symbol:F6RU36 "Uncharacterized protein... 93 0.00092 1
UNIPROTKB|P58400 - symbol:NRXN1 "Neurexin-1-beta" species... 93 0.00097 1
>FB|FBgn0010415 [details] [associations]
symbol:Sdc "Syndecan" species:7227 "Drosophila melanogaster"
[GO:0005886 "plasma membrane" evidence=ISS;NAS] [GO:0005576
"extracellular region" evidence=NAS] [GO:0005925 "focal adhesion"
evidence=ISS] [GO:0004888 "transmembrane signaling receptor
activity" evidence=ISS] [GO:0008092 "cytoskeletal protein binding"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IMP] [GO:0050908
"detection of light stimulus involved in visual perception"
evidence=IMP] [GO:0008045 "motor neuron axon guidance"
evidence=IMP] [GO:0031594 "neuromuscular junction"
evidence=IMP;IDA] [GO:0045202 "synapse" evidence=IDA] [GO:0045887
"positive regulation of synaptic growth at neuromuscular junction"
evidence=IMP] [GO:0097009 "energy homeostasis" evidence=IMP]
[GO:0044246 "regulation of multicellular organismal metabolic
process" evidence=IMP] [GO:0007427 "epithelial cell migration, open
tracheal system" evidence=IMP] [GO:2000637 "positive regulation of
gene silencing by miRNA" evidence=IMP] InterPro:IPR001050
Pfam:PF01034 PROSITE:PS00964 EMBL:AE013599 GO:GO:0016021
GO:GO:0031594 GO:GO:0005925 GO:GO:0008045 GO:GO:0007517
GO:GO:2000637 GO:GO:0007427 GO:GO:0050908 InterPro:IPR003585
SMART:SM00294 GO:GO:0097009 GeneTree:ENSGT00530000063116
PANTHER:PTHR10915 ChiTaRS:SDC1 eggNOG:NOG85596 KO:K16336
EMBL:U03282 EMBL:AY069377 EMBL:AY089610 PIR:A54949
RefSeq:NP_001163238.1 RefSeq:NP_476965.1 RefSeq:NP_726071.1
RefSeq:NP_726072.1 UniGene:Dm.721 ProteinModelPortal:P49415
SMR:P49415 IntAct:P49415 MINT:MINT-807380 STRING:P49415
PaxDb:P49415 EnsemblMetazoa:FBtr0071706 EnsemblMetazoa:FBtr0301557
GeneID:37447 KEGG:dme:Dmel_CG10497 UCSC:CG10497-RA CTD:37447
FlyBase:FBgn0010415 InParanoid:P49415 OrthoDB:EOG4TMPJJ
GenomeRNAi:37447 NextBio:803680 Bgee:P49415 GermOnline:CG10497
GO:GO:0044246 Uniprot:P49415
Length = 399
Score = 256 (95.2 bits), Expect = 8.4e-22, P = 8.4e-22
Identities = 52/62 (83%), Positives = 56/62 (90%)
Query: 4 PLATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSN-REF 62
P + VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYAL+EPKRSPA+NSY KN+N REF
Sbjct: 338 PGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDEPKRSPANNSYAKNANNREF 397
Query: 63 YA 64
YA
Sbjct: 398 YA 399
>WB|WBGene00004749 [details] [associations]
symbol:sdn-1 species:6239 "Caenorhabditis elegans"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0040039 "inductive cell migration"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009986 "cell surface" evidence=IDA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IGI]
[GO:0048730 "epidermis morphogenesis" evidence=IGI;IMP] [GO:0002119
"nematode larval development" evidence=IGI] InterPro:IPR001050
Pfam:PF01034 PROSITE:PS00964 GO:GO:0016021 GO:GO:0009792
GO:GO:0009986 GO:GO:0002119 GO:GO:0040039 GO:GO:0048730
PANTHER:PTHR10915 eggNOG:NOG85596 KO:K16336 EMBL:Z69646 PIR:T22846
RefSeq:NP_741894.1 ProteinModelPortal:P50605 SMR:P50605
STRING:P50605 EnsemblMetazoa:F57C7.3a.1 EnsemblMetazoa:F57C7.3a.2
GeneID:181259 KEGG:cel:CELE_F57C7.3 UCSC:F57C7.3a CTD:181259
WormBase:F57C7.3a HOGENOM:HOG000017508 InParanoid:P50605
OMA:PKPAAND NextBio:913142 ArrayExpress:P50605 Uniprot:P50605
Length = 288
Score = 167 (63.8 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 33/59 (55%), Positives = 47/59 (79%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRS-P-ASNSYMKNSNREFYA 64
+ + GG +V ++ AIL+V+F+V+R+RKKDEGSYAL+EPK++ P AS Y K S +EFYA
Sbjct: 230 AAIAGGVLVAVITAILLVLFVVFRIRKKDEGSYALDEPKQARPYASYGYTKASTKEFYA 288
>UNIPROTKB|F1NV24 [details] [associations]
symbol:SDC1 "Syndecan" species:9031 "Gallus gallus"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0001948
"glycoprotein binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0009897
"external side of plasma membrane" evidence=IEA] [GO:0048627
"myoblast development" evidence=IEA] [GO:0055002 "striated muscle
cell development" evidence=IEA] [GO:0060070 "canonical Wnt receptor
signaling pathway" evidence=IEA] InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 GO:GO:0016021 GO:GO:0005737 GO:GO:0009897
GO:GO:0005925 GO:GO:0060070 InterPro:IPR003585 SMART:SM00294
GeneTree:ENSGT00530000063116 PANTHER:PTHR10915 EMBL:AADN02018555
IPI:IPI00580076 Ensembl:ENSGALT00000026589 OMA:PTHEEVS
Uniprot:F1NV24
Length = 313
Score = 149 (57.5 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
VI G +VGL+ A+ +V F++YRM+KKDEGSY+L+EPK+S + Y K + EFYA
Sbjct: 260 VIAGGLVGLVFAVFLVAFMLYRMKKKDEGSYSLDEPKQS--NGGYQKPHKQEEFYA 313
Score = 28 (14.9 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 1 MTIPLATSTVI 11
+T P ATS V+
Sbjct: 95 VTTPPATSRVV 105
>UNIPROTKB|F1NEY0 [details] [associations]
symbol:SDC2 "Syndecan" species:9031 "Gallus gallus"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0030165 "PDZ
domain binding" evidence=IEA] InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 GO:GO:0016021 InterPro:IPR003585 SMART:SM00294
GeneTree:ENSGT00530000063116 PANTHER:PTHR10915 OMA:KMPAQTK
EMBL:AADN02024913 EMBL:AADN02024914 EMBL:AADN02024915
EMBL:AADN02024916 EMBL:AADN02024917 IPI:IPI00820127
Ensembl:ENSGALT00000030834 ArrayExpress:F1NEY0 Uniprot:F1NEY0
Length = 200
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+S +Y K +EFYA
Sbjct: 146 AAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSSAAYQKAPTKEFYA 200
>UNIPROTKB|F1P3L6 [details] [associations]
symbol:SDC2 "Syndecan" species:9031 "Gallus gallus"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0030165 "PDZ
domain binding" evidence=IEA] InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 GO:GO:0016021 InterPro:IPR003585 SMART:SM00294
GeneTree:ENSGT00530000063116 PANTHER:PTHR10915 EMBL:AADN02024913
EMBL:AADN02024914 EMBL:AADN02024915 EMBL:AADN02024916
EMBL:AADN02024917 IPI:IPI00574119 Ensembl:ENSGALT00000025779
ArrayExpress:F1P3L6 Uniprot:F1P3L6
Length = 181
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+S +Y K +EFYA
Sbjct: 127 AAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSSAAYQKAPTKEFYA 181
>UNIPROTKB|Q58DD4 [details] [associations]
symbol:SDC2 "Syndecan-2" species:9913 "Bos taurus"
[GO:0048814 "regulation of dendrite morphogenesis" evidence=ISS]
[GO:0030165 "PDZ domain binding" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008092 "cytoskeletal
protein binding" evidence=IEA] InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 GO:GO:0016021 GO:GO:0048814 InterPro:IPR003585
SMART:SM00294 GeneTree:ENSGT00530000063116 PANTHER:PTHR10915
EMBL:BT021663 EMBL:BC112468 IPI:IPI00713413 RefSeq:NP_001029960.2
UniGene:Bt.11462 ProteinModelPortal:Q58DD4 SMR:Q58DD4 STRING:Q58DD4
PRIDE:Q58DD4 Ensembl:ENSBTAT00000019090 GeneID:615785
KEGG:bta:615785 CTD:6383 eggNOG:NOG85596 HOGENOM:HOG000263414
HOVERGEN:HBG004501 InParanoid:Q58DD4 KO:K16336 OMA:KMPAQTK
NextBio:20899784 ArrayExpress:Q58DD4 Uniprot:Q58DD4
Length = 202
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+S +Y K +EFYA
Sbjct: 148 AAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSSAAYQKAPTKEFYA 202
>UNIPROTKB|E7ESK6 [details] [associations]
symbol:SDC2 "Syndecan" species:9606 "Homo sapiens"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR001050
Pfam:PF01034 PROSITE:PS00964 GO:GO:0016021 InterPro:IPR003585
SMART:SM00294 PANTHER:PTHR10915 HGNC:HGNC:10659 EMBL:AP003477
EMBL:AP003548 IPI:IPI00976274 ProteinModelPortal:E7ESK6 SMR:E7ESK6
Ensembl:ENST00000518385 ArrayExpress:E7ESK6 Bgee:E7ESK6
Uniprot:E7ESK6
Length = 165
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+S +Y K +EFYA
Sbjct: 111 AAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSSAAYQKAPTKEFYA 165
>UNIPROTKB|E9PBI9 [details] [associations]
symbol:SDC2 "Syndecan" species:9606 "Homo sapiens"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0001666
"response to hypoxia" evidence=IEA] [GO:0031000 "response to
caffeine" evidence=IEA] [GO:0042060 "wound healing" evidence=IEA]
[GO:0043025 "neuronal cell body" evidence=IEA] [GO:0048813
"dendrite morphogenesis" evidence=IEA] InterPro:IPR001050
Pfam:PF01034 PROSITE:PS00964 GO:GO:0016021 GO:GO:0043025
GO:GO:0001666 GO:GO:0045202 GO:GO:0031000 GO:GO:0048813
GO:GO:0042060 InterPro:IPR003585 SMART:SM00294 PANTHER:PTHR10915
HGNC:HGNC:10659 EMBL:AP003477 EMBL:AP003548 IPI:IPI00794290
SMR:E9PBI9 Ensembl:ENST00000519914 Ensembl:ENST00000522911
Uniprot:E9PBI9
Length = 172
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+S +Y K +EFYA
Sbjct: 118 AAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSSAAYQKAPTKEFYA 172
>UNIPROTKB|P34741 [details] [associations]
symbol:SDC2 "Syndecan-2" species:9606 "Homo sapiens"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0001666 "response to hypoxia" evidence=IEA] [GO:0031000
"response to caffeine" evidence=IEA] [GO:0042060 "wound healing"
evidence=IEA] [GO:0043025 "neuronal cell body" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IEA] [GO:0005887
"integral to plasma membrane" evidence=NAS] [GO:0008150
"biological_process" evidence=ND] [GO:0048814 "regulation of
dendrite morphogenesis" evidence=ISS] [GO:0005796 "Golgi lumen"
evidence=TAS] [GO:0005886 "plasma membrane" evidence=TAS]
[GO:0005975 "carbohydrate metabolic process" evidence=TAS]
[GO:0006024 "glycosaminoglycan biosynthetic process" evidence=TAS]
[GO:0006027 "glycosaminoglycan catabolic process" evidence=TAS]
[GO:0030203 "glycosaminoglycan metabolic process" evidence=TAS]
[GO:0030204 "chondroitin sulfate metabolic process" evidence=TAS]
[GO:0043202 "lysosomal lumen" evidence=TAS] [GO:0044281 "small
molecule metabolic process" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0030165 "PDZ domain binding"
evidence=IPI] Reactome:REACT_111217 InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 Reactome:REACT_116125 EMBL:CH471060 GO:GO:0005887
Pathway_Interaction_DB:syndecan_2_pathway GO:GO:0005975
GO:GO:0043025 GO:GO:0001666 GO:GO:0045202 GO:GO:0031000
GO:GO:0048813 GO:GO:0048814 GO:GO:0042060 GO:GO:0043202
GO:GO:0005796 GO:GO:0030204 GO:GO:0006024 GO:GO:0006027
Pathway_Interaction_DB:fgf_pathway InterPro:IPR003585 SMART:SM00294
DrugBank:DB00020 PANTHER:PTHR10915
Pathway_Interaction_DB:syndecan_pathway CTD:6383 eggNOG:NOG85596
HOGENOM:HOG000263414 HOVERGEN:HBG004501 KO:K16336 OMA:KMPAQTK
EMBL:J04621 EMBL:AK025488 EMBL:AK074530 EMBL:AK097839 EMBL:BC030133
EMBL:BC049836 IPI:IPI00300407 PIR:A33880 RefSeq:NP_002989.2
UniGene:Hs.1501 UniGene:Hs.598247 ProteinModelPortal:P34741
SMR:P34741 DIP:DIP-29943N IntAct:P34741 STRING:P34741
PhosphoSite:P34741 DMDM:158962336 PRIDE:P34741 DNASU:6383
Ensembl:ENST00000302190 Ensembl:ENST00000545117 GeneID:6383
KEGG:hsa:6383 UCSC:uc003yhv.1 GeneCards:GC08P097575 HGNC:HGNC:10659
HPA:CAB025123 MIM:142460 neXtProt:NX_P34741 PharmGKB:PA35589
InParanoid:P34741 OrthoDB:EOG47PX75 PhylomeDB:P34741
GenomeRNAi:6383 NextBio:24788 ArrayExpress:P34741 Bgee:P34741
CleanEx:HS_SDC2 Genevestigator:P34741 GermOnline:ENSG00000169439
Uniprot:P34741
Length = 201
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+S +Y K +EFYA
Sbjct: 147 AAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSSAAYQKAPTKEFYA 201
>UNIPROTKB|F1S0L5 [details] [associations]
symbol:SDC2 "Syndecan" species:9823 "Sus scrofa"
[GO:0030165 "PDZ domain binding" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008092 "cytoskeletal
protein binding" evidence=IEA] InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 GO:GO:0016021 InterPro:IPR003585 SMART:SM00294
GeneTree:ENSGT00530000063116 PANTHER:PTHR10915 OMA:KMPAQTK
EMBL:CU468314 Ensembl:ENSSSCT00000006679 Uniprot:F1S0L5
Length = 191
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+S +Y K +EFYA
Sbjct: 137 AAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSSAAYQKAPTKEFYA 191
>MGI|MGI:1349165 [details] [associations]
symbol:Sdc2 "syndecan 2" species:10090 "Mus musculus"
[GO:0005515 "protein binding" evidence=IPI] [GO:0007399 "nervous
system development" evidence=IEA] [GO:0008092 "cytoskeletal protein
binding" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0030165 "PDZ domain binding"
evidence=ISO] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0045202 "synapse" evidence=ISO] Reactome:REACT_112621
InterPro:IPR001050 Pfam:PF01034 PROSITE:PS00964 MGI:MGI:1349165
GO:GO:0016021 GO:GO:0043025 GO:GO:0001666 GO:GO:0045202
GO:GO:0031000 GO:GO:0048813 GO:GO:0048814 Reactome:REACT_118324
GO:GO:0042060 GO:GO:0005796 InterPro:IPR003585 SMART:SM00294
GeneTree:ENSGT00530000063116 PANTHER:PTHR10915 CTD:6383
eggNOG:NOG85596 HOGENOM:HOG000263414 HOVERGEN:HBG004501 KO:K16336
OMA:KMPAQTK OrthoDB:EOG47PX75 EMBL:U00674 EMBL:AK011042
EMBL:BC047144 IPI:IPI00120249 PIR:I53137 RefSeq:NP_032330.1
UniGene:Mm.234266 ProteinModelPortal:P43407 SMR:P43407
STRING:P43407 PhosphoSite:P43407 PRIDE:P43407
Ensembl:ENSMUST00000022871 GeneID:15529 KEGG:mmu:15529
UCSC:uc007vkx.1 InParanoid:P43407 ChiTaRS:SDC2 NextBio:288454
Bgee:P43407 CleanEx:MM_SDC2 Genevestigator:P43407
GermOnline:ENSMUSG00000022261 Uniprot:P43407
Length = 202
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+S +Y K +EFYA
Sbjct: 148 AAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSSAAYQKAPTKEFYA 202
>RGD|3649 [details] [associations]
symbol:Sdc2 "syndecan 2" species:10116 "Rattus norvegicus"
[GO:0001666 "response to hypoxia" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0008092 "cytoskeletal protein binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0030165 "PDZ domain binding" evidence=IEA;ISO] [GO:0031000
"response to caffeine" evidence=IEP] [GO:0042060 "wound healing"
evidence=IEP] [GO:0043025 "neuronal cell body" evidence=IDA]
[GO:0048813 "dendrite morphogenesis" evidence=IEP] [GO:0048814
"regulation of dendrite morphogenesis" evidence=ISS] [GO:0045202
"synapse" evidence=IDA] InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 RGD:3649 GO:GO:0016021 GO:GO:0043025 GO:GO:0001666
GO:GO:0031000 GO:GO:0048813 GO:GO:0048814 GO:GO:0042060
InterPro:IPR003585 SMART:SM00294 PANTHER:PTHR10915 CTD:6383
eggNOG:NOG85596 HOVERGEN:HBG004501 KO:K16336 OrthoDB:EOG47PX75
EMBL:M81687 IPI:IPI00231723 PIR:A42261 RefSeq:NP_037214.1
UniGene:Rn.11127 ProteinModelPortal:P34900 SMR:P34900 IntAct:P34900
STRING:P34900 PhosphoSite:P34900 GeneID:25615 KEGG:rno:25615
UCSC:RGD:3649 InParanoid:P34900 NextBio:607367 ArrayExpress:P34900
Genevestigator:P34900 GermOnline:ENSRNOG00000004936 Uniprot:P34900
Length = 201
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+S +Y K +EFYA
Sbjct: 147 AAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSSAAYQKAPTKEFYA 201
>UNIPROTKB|Q6IRK3 [details] [associations]
symbol:Sdc2 "Syndecan" species:10116 "Rattus norvegicus"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0030165 "PDZ
domain binding" evidence=IEA] InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 RGD:3649 GO:GO:0016021 InterPro:IPR003585
SMART:SM00294 EMBL:CH473950 GeneTree:ENSGT00530000063116
PANTHER:PTHR10915 CTD:6383 HOGENOM:HOG000263414 HOVERGEN:HBG004501
KO:K16336 OMA:KMPAQTK IPI:IPI00231723 RefSeq:NP_037214.1
UniGene:Rn.11127 GeneID:25615 KEGG:rno:25615 NextBio:607367
EMBL:BC070890 SMR:Q6IRK3 STRING:Q6IRK3 Ensembl:ENSRNOT00000007255
InParanoid:Q6IRK3 Genevestigator:Q6IRK3 Uniprot:Q6IRK3
Length = 211
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+S +Y K +EFYA
Sbjct: 157 AAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSSAAYQKAPTKEFYA 211
>ZFIN|ZDB-GENE-021206-3 [details] [associations]
symbol:sdc2 "syndecan 2" species:7955 "Danio rerio"
[GO:0016020 "membrane" evidence=IEA] [GO:0008092 "cytoskeletal
protein binding" evidence=IEA] [GO:0002040 "sprouting angiogenesis"
evidence=IMP] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0055113 "epiboly involved in gastrulation with mouth forming
second" evidence=IMP] [GO:0060973 "cell migration involved in heart
development" evidence=IMP] [GO:0043206 "extracellular fibril
organization" evidence=IMP] [GO:0048565 "digestive tract
development" evidence=IMP] InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 ZFIN:ZDB-GENE-021206-3 GO:GO:0016021 GO:GO:0048565
GO:GO:0002040 GO:GO:0055113 GO:GO:0043206 InterPro:IPR003585
SMART:SM00294 GeneTree:ENSGT00530000063116 PANTHER:PTHR10915
HOVERGEN:HBG004501 HSSP:P31431 EMBL:CU138512 GO:GO:0060973
EMBL:CABZ01057284 EMBL:CABZ01057285 EMBL:CABZ01057286 EMBL:CU210942
EMBL:AF262048 EMBL:AY091914 IPI:IPI00512193 UniGene:Dr.123802
SMR:Q90ZY9 STRING:Q90ZY9 Ensembl:ENSDART00000141437
InParanoid:Q90ZY9 Uniprot:Q90ZY9
Length = 208
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+ +Y K +EFYA
Sbjct: 154 AAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSGAAYQKAPTKEFYA 208
>UNIPROTKB|J9P9D1 [details] [associations]
symbol:SDC2 "Syndecan" species:9615 "Canis lupus
familiaris" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
InterPro:IPR001050 Pfam:PF01034 PROSITE:PS00964 GO:GO:0016021
InterPro:IPR003585 SMART:SM00294 GeneTree:ENSGT00530000063116
PANTHER:PTHR10915 EMBL:AAEX03015991 EMBL:AAEX03015992
EMBL:AAEX03015993 Ensembl:ENSCAFT00000045696 OMA:ICSSCCK
Uniprot:J9P9D1
Length = 309
Score = 153 (58.9 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ VI G V+G L AI +++ +VYRMRKKDEGSY L E R P+S +Y K +EFYA
Sbjct: 255 AAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSSAAYQKAPTKEFYA 309
>UNIPROTKB|F1SCU4 [details] [associations]
symbol:SDC1 "Syndecan" species:9823 "Sus scrofa"
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0055002 "striated muscle cell development"
evidence=IEA] [GO:0048627 "myoblast development" evidence=IEA]
[GO:0009897 "external side of plasma membrane" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0005925
"focal adhesion" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0001948 "glycoprotein binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0008092
"cytoskeletal protein binding" evidence=IEA] InterPro:IPR001050
Pfam:PF01034 PROSITE:PS00964 GO:GO:0016021 GO:GO:0005737
GO:GO:0009897 GO:GO:0005925 GO:GO:0060070 InterPro:IPR003585
SMART:SM00294 GO:GO:0055002 GeneTree:ENSGT00530000063116
OMA:KQANGGA GO:GO:0048627 PANTHER:PTHR10915 EMBL:CU856117
Ensembl:ENSSSCT00000009412 Uniprot:F1SCU4
Length = 286
Score = 149 (57.5 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNRE-FYA 64
VI G +VGL+ A+ +V F++YRM+KKDEGSY+LEEPK++ +Y K S +E FYA
Sbjct: 232 VIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGG-AYQKPSRQEEFYA 286
>UNIPROTKB|E2RT70 [details] [associations]
symbol:SDC1 "Syndecan" species:9615 "Canis lupus
familiaris" [GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0055002 "striated muscle cell development"
evidence=IEA] [GO:0048627 "myoblast development" evidence=IEA]
[GO:0009897 "external side of plasma membrane" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0005925
"focal adhesion" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0001948 "glycoprotein binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0008092
"cytoskeletal protein binding" evidence=IEA] InterPro:IPR001050
Pfam:PF01034 PROSITE:PS00964 GO:GO:0016021 GO:GO:0005737
GO:GO:0009897 GO:GO:0005925 GO:GO:0060070 InterPro:IPR003585
SMART:SM00294 GO:GO:0055002 CTD:6382 GeneTree:ENSGT00530000063116
KO:K06257 OMA:KQANGGA GO:GO:0048627 PANTHER:PTHR10915
EMBL:AAEX03010760 EMBL:AAEX03010759 RefSeq:XP_540099.3
Ensembl:ENSCAFT00000006168 GeneID:482986 KEGG:cfa:482986
NextBio:20857450 Uniprot:E2RT70
Length = 310
Score = 149 (57.5 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNRE-FYA 64
VI G +VGL+ A+ +V F++YRM+KKDEGSY+LEEPK++ +Y K S +E FYA
Sbjct: 256 VIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGG-AYQKPSKQEEFYA 310
>MGI|MGI:1349162 [details] [associations]
symbol:Sdc1 "syndecan 1" species:10090 "Mus musculus"
[GO:0001948 "glycoprotein binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=ISO] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008092 "cytoskeletal protein binding"
evidence=IEA] [GO:0009897 "external side of plasma membrane"
evidence=IDA] [GO:0009986 "cell surface" evidence=IDA] [GO:0016020
"membrane" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0048627 "myoblast development" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IMP]
Reactome:REACT_112621 InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 MGI:MGI:1349162 GO:GO:0016021 GO:GO:0005576
GO:GO:0043234 GO:GO:0009897 GO:GO:0051592 GO:GO:0009636
GO:GO:0051384 GO:GO:0005925 Reactome:REACT_118324 GO:GO:0042542
GO:GO:0042060 GO:GO:0060009 GO:GO:0005796 GO:GO:0051591
GO:GO:0042476 GO:GO:0060070 GO:GO:0001657 InterPro:IPR003585
SMART:SM00294 GO:GO:0001931 GO:GO:0055002 CTD:6382 eggNOG:NOG86393
HOGENOM:HOG000133092 HOVERGEN:HBG017783 KO:K06257 OMA:KQANGGA
OrthoDB:EOG46DM3T GO:GO:0048627 PANTHER:PTHR10915 ChiTaRS:SDC1
EMBL:X15487 EMBL:Z22532 EMBL:AF134897 EMBL:BC010560 EMBL:L11565
IPI:IPI00115450 IPI:IPI00125849 PIR:S06619 RefSeq:NP_035649.1
UniGene:Mm.2580 ProteinModelPortal:P18828 SMR:P18828 STRING:P18828
PhosphoSite:P18828 PaxDb:P18828 PRIDE:P18828
Ensembl:ENSMUST00000020911 Ensembl:ENSMUST00000171158 GeneID:20969
KEGG:mmu:20969 UCSC:uc007nad.1 InParanoid:P18828 NextBio:299930
PMAP-CutDB:P18828 Bgee:P18828 CleanEx:MM_SDC1 Genevestigator:P18828
GermOnline:ENSMUSG00000020592 Uniprot:P18828
Length = 311
Score = 148 (57.2 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 30/56 (53%), Positives = 43/56 (76%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNRE-FYA 64
VI G +VGL+ A+ +V F++YRM+KKDEGSY+LEEPK++ +Y K + +E FYA
Sbjct: 257 VIAGGLVGLIFAVCLVAFMLYRMKKKDEGSYSLEEPKQANGG-AYQKPTKQEEFYA 311
>RGD|3648 [details] [associations]
symbol:Sdc1 "syndecan 1" species:10116 "Rattus norvegicus"
[GO:0001657 "ureteric bud development" evidence=IEP] [GO:0001948
"glycoprotein binding" evidence=IEA;ISO] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0005925 "focal adhesion" evidence=IEA;ISO] [GO:0006954
"inflammatory response" evidence=IDA] [GO:0007155 "cell adhesion"
evidence=NAS] [GO:0007267 "cell-cell signaling" evidence=NAS]
[GO:0008022 "protein C-terminus binding" evidence=IEA;ISO]
[GO:0008092 "cytoskeletal protein binding" evidence=IEA] [GO:0009636
"response to toxic substance" evidence=IEP] [GO:0009897 "external
side of plasma membrane" evidence=IEA;ISO] [GO:0009986 "cell surface"
evidence=ISO] [GO:0010033 "response to organic substance"
evidence=IEP] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0042060 "wound healing" evidence=IEP] [GO:0042476 "odontogenesis"
evidence=IEP] [GO:0042542 "response to hydrogen peroxide"
evidence=IEP] [GO:0043234 "protein complex" evidence=IDA] [GO:0048627
"myoblast development" evidence=IEA;ISO] [GO:0050840 "extracellular
matrix binding" evidence=TAS] [GO:0051384 "response to glucocorticoid
stimulus" evidence=IEP] [GO:0051591 "response to cAMP" evidence=IEP]
[GO:0051592 "response to calcium ion" evidence=IEP] [GO:0055002
"striated muscle cell development" evidence=IEA;ISO] [GO:0060009
"Sertoli cell development" evidence=IEP] [GO:0060070 "canonical Wnt
receptor signaling pathway" evidence=IEA;ISO] InterPro:IPR001050
Pfam:PF01034 PROSITE:PS00964 RGD:3648 GO:GO:0016021 GO:GO:0005737
GO:GO:0043234 GO:GO:0009897 GO:GO:0051592 GO:GO:0009636 GO:GO:0051384
GO:GO:0007155 GO:GO:0007267 GO:GO:0005925 GO:GO:0042542 GO:GO:0042060
GO:GO:0060009 GO:GO:0051591 GO:GO:0042476 GO:GO:0050840 GO:GO:0060070
GO:GO:0001657 InterPro:IPR003585 SMART:SM00294 GO:GO:0055002 CTD:6382
eggNOG:NOG86393 GeneTree:ENSGT00530000063116 HOGENOM:HOG000133092
HOVERGEN:HBG017783 KO:K06257 OMA:KQANGGA OrthoDB:EOG46DM3T
GO:GO:0048627 PANTHER:PTHR10915 EMBL:X60651 EMBL:M81785 EMBL:S61865
EMBL:BC061834 IPI:IPI00191678 PIR:A42853 RefSeq:NP_037158.1
UniGene:Rn.11176 IntAct:P26260 STRING:P26260 PhosphoSite:P26260
PRIDE:P26260 Ensembl:ENSRNOT00000008582 GeneID:25216 KEGG:rno:25216
InParanoid:P26260 NextBio:605749 Genevestigator:P26260
GermOnline:ENSRNOG00000006396 Uniprot:P26260
Length = 313
Score = 148 (57.2 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 30/56 (53%), Positives = 43/56 (76%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNRE-FYA 64
VI G +VGL+ A+ +V F++YRM+KKDEGSY+LEEPK++ +Y K + +E FYA
Sbjct: 259 VIAGGLVGLIFAVCLVAFMLYRMKKKDEGSYSLEEPKQANGG-AYQKPTKQEEFYA 313
>UNIPROTKB|P18827 [details] [associations]
symbol:SDC1 "Syndecan-1" species:9606 "Homo sapiens"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0001657 "ureteric bud development" evidence=IEA] [GO:0001948
"glycoprotein binding" evidence=IEA] [GO:0009636 "response to toxic
substance" evidence=IEA] [GO:0009897 "external side of plasma
membrane" evidence=IEA] [GO:0042060 "wound healing" evidence=IEA]
[GO:0042476 "odontogenesis" evidence=IEA] [GO:0042542 "response to
hydrogen peroxide" evidence=IEA] [GO:0043234 "protein complex"
evidence=IEA] [GO:0051384 "response to glucocorticoid stimulus"
evidence=IEA] [GO:0051591 "response to cAMP" evidence=IEA]
[GO:0051592 "response to calcium ion" evidence=IEA] [GO:0060009
"Sertoli cell development" evidence=IEA] [GO:0060070 "canonical Wnt
receptor signaling pathway" evidence=IEA] [GO:0005576
"extracellular region" evidence=IEA] [GO:0048627 "myoblast
development" evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0055002 "striated muscle cell development"
evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005887 "integral to plasma membrane" evidence=TAS] [GO:0005796
"Golgi lumen" evidence=TAS] [GO:0005886 "plasma membrane"
evidence=TAS] [GO:0005975 "carbohydrate metabolic process"
evidence=TAS] [GO:0006024 "glycosaminoglycan biosynthetic process"
evidence=TAS] [GO:0006027 "glycosaminoglycan catabolic process"
evidence=TAS] [GO:0006629 "lipid metabolic process" evidence=TAS]
[GO:0030203 "glycosaminoglycan metabolic process" evidence=TAS]
[GO:0030204 "chondroitin sulfate metabolic process" evidence=TAS]
[GO:0042157 "lipoprotein metabolic process" evidence=TAS]
[GO:0043202 "lysosomal lumen" evidence=TAS] [GO:0044281 "small
molecule metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005925 "focal adhesion" evidence=IDA]
Reactome:REACT_111217 InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 Reactome:REACT_116125 GO:GO:0005576 EMBL:CH471053
GO:GO:0043234 GO:GO:0005887 GO:GO:0009897 GO:GO:0051592
GO:GO:0005975 GO:GO:0009636 GO:GO:0051384 GO:GO:0006629
GO:GO:0005925 GO:GO:0042157
Pathway_Interaction_DB:arf6_traffickingpathway GO:GO:0042542
GO:GO:0042060 GO:GO:0060009 GO:GO:0043202 GO:GO:0005796
GO:GO:0030204 GO:GO:0006024 GO:GO:0006027
Pathway_Interaction_DB:avb3_integrin_pathway GO:GO:0051591
GO:GO:0042476 GO:GO:0060070 GO:GO:0001657
Pathway_Interaction_DB:syndecan_1_pathway InterPro:IPR003585
SMART:SM00294 GO:GO:0001931 GO:GO:0055002 CTD:6382 eggNOG:NOG86393
HOGENOM:HOG000133092 HOVERGEN:HBG017783 KO:K06257 OMA:KQANGGA
OrthoDB:EOG46DM3T GO:GO:0048627 PANTHER:PTHR10915 EMBL:X60306
EMBL:J05392 EMBL:AJ551176 EMBL:AC104792 EMBL:BC008765 EMBL:Z48199
IPI:IPI00002441 PIR:A41776 RefSeq:NP_001006947.1 RefSeq:NP_002988.3
UniGene:Hs.224607 UniGene:Hs.665958 ProteinModelPortal:P18827
SMR:P18827 DIP:DIP-1123N IntAct:P18827 STRING:P18827
PhosphoSite:P18827 DMDM:229463011 PaxDb:P18827 PRIDE:P18827
DNASU:6382 Ensembl:ENST00000254351 Ensembl:ENST00000381150
GeneID:6382 KEGG:hsa:6382 UCSC:uc002rdo.1 GeneCards:GC02M020400
H-InvDB:HIX0161948 HGNC:HGNC:10658 HPA:CAB002424 HPA:HPA006185
MIM:186355 neXtProt:NX_P18827 PharmGKB:PA35588 InParanoid:P18827
PhylomeDB:P18827 Pathway_Interaction_DB:syndecan_pathway
ChiTaRS:SDC1 GenomeRNAi:6382 NextBio:24782 PMAP-CutDB:P18827
ArrayExpress:P18827 Bgee:P18827 CleanEx:HS_SDC1
Genevestigator:P18827 GermOnline:ENSG00000115884 Uniprot:P18827
Length = 310
Score = 146 (56.5 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 30/56 (53%), Positives = 43/56 (76%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNRE-FYA 64
VI G +VGL+ A+ +V F++YRM+KKDEGSY+LEEPK++ +Y K + +E FYA
Sbjct: 256 VIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGG-AYQKPTKQEEFYA 310
>UNIPROTKB|Q08DZ5 [details] [associations]
symbol:SDC1 "Syndecan-1" species:9913 "Bos taurus"
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0055002 "striated muscle cell development"
evidence=IEA] [GO:0048627 "myoblast development" evidence=IEA]
[GO:0009897 "external side of plasma membrane" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0005925
"focal adhesion" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0001948 "glycoprotein binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0008092
"cytoskeletal protein binding" evidence=IEA] InterPro:IPR001050
Pfam:PF01034 PROSITE:PS00964 GO:GO:0016021 GO:GO:0005737
GO:GO:0009897 GO:GO:0005925 GO:GO:0060070 InterPro:IPR003585
SMART:SM00294 GO:GO:0055002 EMBL:BC123495 IPI:IPI00716469
RefSeq:NP_001069392.1 UniGene:Bt.46190 STRING:Q08DZ5 PRIDE:Q08DZ5
Ensembl:ENSBTAT00000014810 GeneID:529759 KEGG:bta:529759 CTD:6382
eggNOG:NOG86393 GeneTree:ENSGT00530000063116 HOGENOM:HOG000133092
HOVERGEN:HBG017783 InParanoid:Q08DZ5 KO:K06257 OMA:KQANGGA
OrthoDB:EOG46DM3T NextBio:20875097 ArrayExpress:Q08DZ5
GO:GO:0048627 PANTHER:PTHR10915 Uniprot:Q08DZ5
Length = 311
Score = 146 (56.5 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 30/56 (53%), Positives = 43/56 (76%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNRE-FYA 64
VI G +VGL+ A+ +V F++YRM+KKDEGSY+LEEPK++ +Y K + +E FYA
Sbjct: 257 VIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGG-AYQKPTKQEEFYA 311
>ZFIN|ZDB-GENE-030131-9021 [details] [associations]
symbol:sdc3 "syndecan 3" species:7955 "Danio
rerio" [GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0055113 "epiboly involved in
gastrulation with mouth forming second" evidence=IMP]
InterPro:IPR001050 Pfam:PF01034 PROSITE:PS00964
ZFIN:ZDB-GENE-030131-9021 GO:GO:0016021 GO:GO:0055113
InterPro:IPR003585 SMART:SM00294 PANTHER:PTHR10915 EMBL:HQ827172
IPI:IPI00898401 UniGene:Dr.162030 UniGene:Dr.28157 Uniprot:F1DFN3
Length = 402
Score = 147 (56.8 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 33/56 (58%), Positives = 40/56 (71%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
VI G VVG L A +VM +VYRM+KKDEGSY LEEPK+ A+ +Y K + EFYA
Sbjct: 349 VIVGGVVGALFAAFLVMLLVYRMKKKDEGSYTLEEPKQ--ATVTYQKPDKQEEFYA 402
>UNIPROTKB|F1NKM5 [details] [associations]
symbol:SDC3 "Syndecan" species:9031 "Gallus gallus"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR001050
Pfam:PF01034 PROSITE:PS00964 GO:GO:0016021 InterPro:IPR003585
SMART:SM00294 GeneTree:ENSGT00530000063116 PANTHER:PTHR10915
IPI:IPI00602452 OMA:EETTQPD EMBL:AADN02051376 EMBL:AADN02051377
EMBL:AADN02051378 EMBL:AADN02051379 Ensembl:ENSGALT00000000793
Uniprot:F1NKM5
Length = 405
Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 32/56 (57%), Positives = 40/56 (71%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
VI G VVG L A +VM ++YRM+KKDEGSY LEEPK+ A+ +Y K + EFYA
Sbjct: 352 VIVGGVVGALFAAFLVMLLIYRMKKKDEGSYTLEEPKQ--ANVTYQKPDKQEEFYA 405
>UNIPROTKB|P26261 [details] [associations]
symbol:SDC3 "Syndecan-3" species:9031 "Gallus gallus"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 GO:GO:0016021 GO:GO:0007275 GO:GO:0030154
InterPro:IPR003585 SMART:SM00294 PANTHER:PTHR10915 eggNOG:NOG85596
EMBL:M84910 IPI:IPI00602452 PIR:A44146 RefSeq:NP_990714.1
UniGene:Gga.3136 ProteinModelPortal:P26261 STRING:P26261
GeneID:396343 KEGG:gga:396343 CTD:9672 HOGENOM:HOG000049151
HOVERGEN:HBG004144 InParanoid:P26261 KO:K16337 OrthoDB:EOG4N30Q5
NextBio:20816391 Uniprot:P26261
Length = 405
Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 32/56 (57%), Positives = 40/56 (71%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
VI G VVG L A +VM ++YRM+KKDEGSY LEEPK+ A+ +Y K + EFYA
Sbjct: 352 VIVGGVVGALFAAFLVMLLIYRMKKKDEGSYTLEEPKQ--ANVTYQKPDKQEEFYA 405
>UNIPROTKB|D3DPN2 [details] [associations]
symbol:SDC3 "Syndecan" species:9606 "Homo sapiens"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR001050
Pfam:PF01034 PROSITE:PS00964 GO:GO:0016021 EMBL:CH471059
InterPro:IPR003585 SMART:SM00294 EMBL:AL445235 PANTHER:PTHR10915
HOGENOM:HOG000049151 UniGene:Hs.158287 HGNC:HGNC:10660 ChiTaRS:SDC3
IPI:IPI00023942 SMR:D3DPN2 Ensembl:ENST00000336798 UCSC:uc001bsd.2
Uniprot:D3DPN2
Length = 384
Score = 143 (55.4 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
VI G VVG L A +V ++YRM+KKDEGSY LEEPK+ AS +Y K + EFYA
Sbjct: 331 VIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQ--ASVTYQKPDKQEEFYA 384
>UNIPROTKB|F1Q3P6 [details] [associations]
symbol:SDC3 "Syndecan" species:9615 "Canis lupus
familiaris" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
InterPro:IPR001050 Pfam:PF01034 PROSITE:PS00964 GO:GO:0016021
InterPro:IPR003585 SMART:SM00294 GeneTree:ENSGT00530000063116
PANTHER:PTHR10915 OMA:EETTQPD EMBL:AAEX03001677
Ensembl:ENSCAFT00000017847 Uniprot:F1Q3P6
Length = 400
Score = 143 (55.4 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
VI G VVG L A +V ++YRM+KKDEGSY LEEPK+ AS +Y K + EFYA
Sbjct: 347 VIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQ--ASVTYQKPDKQEEFYA 400
>UNIPROTKB|F1STL1 [details] [associations]
symbol:SDC3 "Syndecan" species:9823 "Sus scrofa"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0008092
"cytoskeletal protein binding" evidence=IEA] InterPro:IPR001050
Pfam:PF01034 PROSITE:PS00964 GO:GO:0016021 InterPro:IPR003585
SMART:SM00294 GeneTree:ENSGT00530000063116 PANTHER:PTHR10915
OMA:EETTQPD EMBL:CU928875 Ensembl:ENSSSCT00000003987 Uniprot:F1STL1
Length = 425
Score = 143 (55.4 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
VI G VVG L A +V ++YRM+KKDEGSY LEEPK+ AS +Y K + EFYA
Sbjct: 372 VIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQ--ASVTYQKPDKQEEFYA 425
>UNIPROTKB|F1MP76 [details] [associations]
symbol:SDC3 "Syndecan" species:9913 "Bos taurus"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0008092
"cytoskeletal protein binding" evidence=IEA] InterPro:IPR001050
Pfam:PF01034 PROSITE:PS00964 GO:GO:0016021 InterPro:IPR003585
SMART:SM00294 GeneTree:ENSGT00530000063116 PANTHER:PTHR10915
OMA:EETTQPD EMBL:DAAA02006267 IPI:IPI00702942
Ensembl:ENSBTAT00000038035 Uniprot:F1MP76
Length = 442
Score = 143 (55.4 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
VI G VVG L A +V ++YRM+KKDEGSY LEEPK+ AS +Y K + EFYA
Sbjct: 389 VIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQ--ASVTYQKPDKQEEFYA 442
>UNIPROTKB|O75056 [details] [associations]
symbol:SDC3 "Syndecan-3" species:9606 "Homo sapiens"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0030203
"glycosaminoglycan metabolic process" evidence=TAS] [GO:0030204
"chondroitin sulfate metabolic process" evidence=TAS] [GO:0043202
"lysosomal lumen" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0005796 "Golgi lumen"
evidence=TAS] [GO:0005886 "plasma membrane" evidence=TAS]
[GO:0005975 "carbohydrate metabolic process" evidence=TAS]
[GO:0006024 "glycosaminoglycan biosynthetic process" evidence=TAS]
[GO:0006027 "glycosaminoglycan catabolic process" evidence=TAS]
Reactome:REACT_111217 InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 GO:GO:0016021 GO:GO:0005886 Reactome:REACT_116125
GO:GO:0043234 GO:GO:0005975 GO:GO:0030424 GO:GO:0007155
GO:GO:0043202 GO:GO:0005796 GO:GO:0030204 GO:GO:0006024
GO:GO:0006027 Pathway_Interaction_DB:syndecan_3_pathway
InterPro:IPR003585 SMART:SM00294 EMBL:AL445235 PANTHER:PTHR10915
Pathway_Interaction_DB:syndecan_pathway eggNOG:NOG85596 CTD:9672
HOGENOM:HOG000049151 HOVERGEN:HBG004144 KO:K16337 EMBL:AF248634
EMBL:AB007937 EMBL:BC013974 IPI:IPI00395366 RefSeq:NP_055469.3
UniGene:Hs.158287 ProteinModelPortal:O75056 SMR:O75056
DIP:DIP-29944N IntAct:O75056 STRING:O75056 PhosphoSite:O75056
PaxDb:O75056 PRIDE:O75056 DNASU:9672 Ensembl:ENST00000339394
GeneID:9672 KEGG:hsa:9672 UCSC:uc001bse.2 GeneCards:GC01M031342
H-InvDB:HIX0000348 HGNC:HGNC:10660 HPA:CAB025786 HPA:HPA017087
MIM:186357 neXtProt:NX_O75056 PharmGKB:PA35590 InParanoid:O75056
OMA:EETTQPD PhylomeDB:O75056 ChiTaRS:SDC3 GenomeRNAi:9672
NextBio:36319 ArrayExpress:O75056 Bgee:O75056 CleanEx:HS_SDC3
Genevestigator:O75056 GermOnline:ENSG00000162512 Uniprot:O75056
Length = 442
Score = 143 (55.4 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
VI G VVG L A +V ++YRM+KKDEGSY LEEPK+ AS +Y K + EFYA
Sbjct: 389 VIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQ--ASVTYQKPDKQEEFYA 442
>MGI|MGI:1349163 [details] [associations]
symbol:Sdc3 "syndecan 3" species:10090 "Mus musculus"
[GO:0007155 "cell adhesion" evidence=ISO] [GO:0008092 "cytoskeletal
protein binding" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0030424 "axon"
evidence=ISO] [GO:0043005 "neuron projection" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] Reactome:REACT_112621
InterPro:IPR001050 Pfam:PF01034 PROSITE:PS00964 MGI:MGI:1349163
GO:GO:0016021 GO:GO:0043234 GO:GO:0030424 GO:GO:0007155
Reactome:REACT_118324 GO:GO:0005796 InterPro:IPR003585
SMART:SM00294 GeneTree:ENSGT00530000063116 PANTHER:PTHR10915
eggNOG:NOG85596 CTD:9672 HOGENOM:HOG000049151 HOVERGEN:HBG004144
KO:K16337 OrthoDB:EOG4N30Q5 OMA:EETTQPD EMBL:U52826 EMBL:AK129153
EMBL:AK150120 EMBL:AK155127 EMBL:BC054795 EMBL:BC062093
IPI:IPI00135452 RefSeq:NP_035650.2 UniGene:Mm.206536
ProteinModelPortal:Q64519 SMR:Q64519 IntAct:Q64519 STRING:Q64519
PhosphoSite:Q64519 PaxDb:Q64519 PRIDE:Q64519
Ensembl:ENSMUST00000070478 GeneID:20970 KEGG:mmu:20970
InParanoid:Q64519 NextBio:299934 Bgee:Q64519 CleanEx:MM_SDC3
Genevestigator:Q64519 GermOnline:ENSMUSG00000025743 Uniprot:Q64519
Length = 442
Score = 143 (55.4 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
VI G VVG L A +V ++YRM+KKDEGSY LEEPK+ AS +Y K + EFYA
Sbjct: 389 VIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQ--ASVTYQKPDKQEEFYA 442
>RGD|621486 [details] [associations]
symbol:Sdc3 "syndecan 3" species:10116 "Rattus norvegicus"
[GO:0005515 "protein binding" evidence=IPI] [GO:0007155 "cell
adhesion" evidence=IDA] [GO:0008092 "cytoskeletal protein binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA;TAS]
[GO:0030424 "axon" evidence=IDA] [GO:0043005 "neuron projection"
evidence=IDA] [GO:0043234 "protein complex" evidence=IDA]
InterPro:IPR001050 Pfam:PF01034 PROSITE:PS00964 RGD:621486
GO:GO:0016021 GO:GO:0043234 GO:GO:0030424 GO:GO:0007155
InterPro:IPR003585 SMART:SM00294 PANTHER:PTHR10915 eggNOG:NOG85596
CTD:9672 HOGENOM:HOG000049151 HOVERGEN:HBG004144 KO:K16337
OrthoDB:EOG4N30Q5 EMBL:U52825 EMBL:U73184 EMBL:X63143
IPI:IPI00193426 PIR:A41558 RefSeq:NP_446345.3 UniGene:Rn.10504
IntAct:P33671 STRING:P33671 PhosphoSite:P33671 GeneID:116673
KEGG:rno:116673 UCSC:RGD:621486 InParanoid:P33671 NextBio:619495
Genevestigator:P33671 GermOnline:ENSRNOG00000011927 Uniprot:P33671
Length = 442
Score = 143 (55.4 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
VI G VVG L A +V ++YRM+KKDEGSY LEEPK+ AS +Y K + EFYA
Sbjct: 389 VIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQ--ASVTYQKPDKQEEFYA 442
>UNIPROTKB|P33671 [details] [associations]
symbol:Sdc3 "Syndecan-3" species:10116 "Rattus norvegicus"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
InterPro:IPR001050 Pfam:PF01034 PROSITE:PS00964 RGD:621486
GO:GO:0016021 GO:GO:0043234 GO:GO:0030424 GO:GO:0007155
InterPro:IPR003585 SMART:SM00294 PANTHER:PTHR10915 eggNOG:NOG85596
CTD:9672 HOGENOM:HOG000049151 HOVERGEN:HBG004144 KO:K16337
OrthoDB:EOG4N30Q5 EMBL:U52825 EMBL:U73184 EMBL:X63143
IPI:IPI00193426 PIR:A41558 RefSeq:NP_446345.3 UniGene:Rn.10504
IntAct:P33671 STRING:P33671 PhosphoSite:P33671 GeneID:116673
KEGG:rno:116673 UCSC:RGD:621486 InParanoid:P33671 NextBio:619495
Genevestigator:P33671 GermOnline:ENSRNOG00000011927 Uniprot:P33671
Length = 442
Score = 143 (55.4 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMK-NSNREFYA 64
VI G VVG L A +V ++YRM+KKDEGSY LEEPK+ AS +Y K + EFYA
Sbjct: 389 VIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQ--ASVTYQKPDKQEEFYA 442
>UNIPROTKB|P49416 [details] [associations]
symbol:SDC4 "Syndecan-4" species:9031 "Gallus gallus"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0009986 "cell
surface" evidence=IEA] [GO:0070053 "thrombospondin receptor
activity" evidence=IEA] InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 GO:GO:0016021 GO:GO:0009986 InterPro:IPR003585
SMART:SM00294 GO:GO:0070053 GeneTree:ENSGT00530000063116
PANTHER:PTHR10915 HOGENOM:HOG000263414 HOVERGEN:HBG004501 KO:K16338
EMBL:L23940 IPI:IPI00584027 PIR:A53126 RefSeq:NP_001007870.1
UniGene:Gga.44748 ProteinModelPortal:P49416 SMR:P49416
STRING:P49416 Ensembl:ENSGALT00000006265 GeneID:419184
KEGG:gga:419184 CTD:6385 eggNOG:NOG83582 InParanoid:P49416
OMA:LSNKISM OrthoDB:EOG4MSD0Z NextBio:20822282 Uniprot:P49416
Length = 197
Score = 118 (46.6 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYAL-EEP--KRSPASNSY 54
T+ + GGAV GLL A+ +++ +VYRM+KKDEGSY L ++P K++P + Y
Sbjct: 147 TALIAGGAV-GLLFAVFLILLLVYRMKKKDEGSYDLGKKPIYKKAPTNEFY 196
>UNIPROTKB|Q8HZJ6 [details] [associations]
symbol:SDC4 "Syndecan-4" species:9823 "Sus scrofa"
[GO:0005576 "extracellular region" evidence=IEA] [GO:0070053
"thrombospondin receptor activity" evidence=IEA] [GO:0009986 "cell
surface" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0008092 "cytoskeletal protein binding"
evidence=IEA] InterPro:IPR001050 Pfam:PF01034 PROSITE:PS00964
GO:GO:0016021 GO:GO:0005576 GO:GO:0009986 InterPro:IPR003585
SMART:SM00294 GO:GO:0070053 PANTHER:PTHR10915 HOGENOM:HOG000263414
HOVERGEN:HBG004501 KO:K16338 CTD:6385 eggNOG:NOG83582
OrthoDB:EOG4MSD0Z EMBL:AF548542 RefSeq:NP_999449.1
UniGene:Ssc.16324 HSSP:P31431 ProteinModelPortal:Q8HZJ6 SMR:Q8HZJ6
STRING:Q8HZJ6 GeneID:397528 KEGG:ssc:397528 Uniprot:Q8HZJ6
Length = 202
Score = 118 (46.6 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 8 STVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYAL-EEP--KRSPASNSY 54
S +I G +VG+L A+ +V+ +VYRM+KKDEGSY L ++P K++P + Y
Sbjct: 152 SALIVGGIVGILFAVFLVLLLVYRMKKKDEGSYDLGKKPIYKKAPTNEFY 201
>UNIPROTKB|E1BKS1 [details] [associations]
symbol:SDC4 "Syndecan" species:9913 "Bos taurus"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0008092
"cytoskeletal protein binding" evidence=IEA] InterPro:IPR001050
Pfam:PF01034 PROSITE:PS00964 GO:GO:0016021 InterPro:IPR003585
SMART:SM00294 GeneTree:ENSGT00530000063116 PANTHER:PTHR10915
KO:K16338 CTD:6385 OMA:EGRYFSG EMBL:DAAA02036738 IPI:IPI00693047
RefSeq:XP_002692376.1 RefSeq:XP_584869.2 UniGene:Bt.14031
Ensembl:ENSBTAT00000020125 GeneID:508133 KEGG:bta:508133
NextBio:20868367 Uniprot:E1BKS1
Length = 199
Score = 117 (46.2 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 25/48 (52%), Positives = 37/48 (77%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYAL-EEP--KRSPASNSY 54
V+GG VVG+L A+ +V+ +VYRM+KKDEGSY L ++P K++P + Y
Sbjct: 152 VVGG-VVGILFAVFLVLLLVYRMKKKDEGSYDLGKKPIYKKAPTNEFY 198
>UNIPROTKB|G3MYP1 [details] [associations]
symbol:SDC4 "Syndecan" species:9913 "Bos taurus"
[GO:0070053 "thrombospondin receptor activity" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0008092 "cytoskeletal protein binding"
evidence=IEA] InterPro:IPR001050 Pfam:PF01034 PROSITE:PS00964
GO:GO:0016021 GO:GO:0009986 InterPro:IPR003585 SMART:SM00294
GO:GO:0070053 GeneTree:ENSGT00530000063116 PANTHER:PTHR10915
EMBL:DAAA02036738 Ensembl:ENSBTAT00000063660 Uniprot:G3MYP1
Length = 201
Score = 117 (46.2 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 25/48 (52%), Positives = 37/48 (77%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYAL-EEP--KRSPASNSY 54
V+GG VVG+L A+ +V+ +VYRM+KKDEGSY L ++P K++P + Y
Sbjct: 154 VVGG-VVGILFAVFLVLLLVYRMKKKDEGSYDLGKKPIYKKAPTNEFY 200
>MGI|MGI:1349164 [details] [associations]
symbol:Sdc4 "syndecan 4" species:10090 "Mus musculus"
[GO:0001968 "fibronectin binding" evidence=ISO] [GO:0005080
"protein kinase C binding" evidence=ISO] [GO:0005576 "extracellular
region" evidence=IEA] [GO:0005925 "focal adhesion" evidence=ISO]
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0009986 "cell surface" evidence=ISO;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0043034 "costamere" evidence=ISO] [GO:0045121 "membrane raft"
evidence=ISO] [GO:0045860 "positive regulation of protein kinase
activity" evidence=ISO] [GO:0051496 "positive regulation of stress
fiber assembly" evidence=ISO] [GO:0051894 "positive regulation of
focal adhesion assembly" evidence=ISO] [GO:0070053 "thrombospondin
receptor activity" evidence=ISO] Reactome:REACT_112621
InterPro:IPR001050 Pfam:PF01034 PROSITE:PS00964 MGI:MGI:1349164
GO:GO:0016021 GO:GO:0005576 GO:GO:0009986 GO:GO:0051496
GO:GO:0045860 GO:GO:0005925 GO:GO:0045121 GO:GO:0043034
Reactome:REACT_118324 GO:GO:0005796 GO:GO:0001657
InterPro:IPR003585 SMART:SM00294 GO:GO:0070053 GO:GO:0051894
PANTHER:PTHR10915 HOGENOM:HOG000263414 HOVERGEN:HBG004501 KO:K16338
CTD:6385 eggNOG:NOG83582 OrthoDB:EOG4MSD0Z OMA:EGRYFSG ChiTaRS:SDC4
EMBL:D89571 EMBL:D89572 EMBL:BC005679 IPI:IPI00136382 PIR:JC5613
RefSeq:NP_035651.1 UniGene:Mm.490266 ProteinModelPortal:O35988
SMR:O35988 STRING:O35988 PhosphoSite:O35988 PaxDb:O35988
PRIDE:O35988 Ensembl:ENSMUST00000017153 GeneID:20971 KEGG:mmu:20971
InParanoid:O35988 NextBio:299938 PMAP-CutDB:O35988 Bgee:O35988
CleanEx:MM_SDC4 Genevestigator:O35988 GermOnline:ENSMUSG00000017009
Uniprot:O35988
Length = 198
Score = 115 (45.5 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYAL-EEP--KRSPASNSY 54
++GG VVG+L A+ +++ +VYRM+KKDEGSY L ++P K++P + Y
Sbjct: 151 IVGG-VVGILFAVFLILLLVYRMKKKDEGSYDLGKKPIYKKAPTNEFY 197
>RGD|3650 [details] [associations]
symbol:Sdc4 "syndecan 4" species:10116 "Rattus norvegicus"
[GO:0001657 "ureteric bud development" evidence=IEP] [GO:0001968
"fibronectin binding" evidence=IDA] [GO:0005080 "protein kinase C
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005576 "extracellular region" evidence=IEA] [GO:0005925 "focal
adhesion" evidence=IDA] [GO:0007155 "cell adhesion" evidence=NAS]
[GO:0007267 "cell-cell signaling" evidence=NAS] [GO:0008092
"cytoskeletal protein binding" evidence=IEA] [GO:0009986 "cell
surface" evidence=ISO;IDA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0043034 "costamere" evidence=IDA] [GO:0045121
"membrane raft" evidence=IDA] [GO:0045860 "positive regulation of
protein kinase activity" evidence=IMP] [GO:0051496 "positive
regulation of stress fiber assembly" evidence=IMP] [GO:0051894
"positive regulation of focal adhesion assembly" evidence=IMP]
[GO:0070053 "thrombospondin receptor activity" evidence=IEA;ISO]
InterPro:IPR001050 Pfam:PF01034 PROSITE:PS00964 RGD:3650
GO:GO:0016021 GO:GO:0005080 GO:GO:0005576 GO:GO:0009986 GO:GO:0051496
GO:GO:0007155 GO:GO:0007267 GO:GO:0045860 GO:GO:0005925 GO:GO:0045121
GO:GO:0043034 GO:GO:0001968 GO:GO:0001657 InterPro:IPR003585
SMART:SM00294 GO:GO:0070053 GO:GO:0051894
GeneTree:ENSGT00530000063116 PANTHER:PTHR10915 HOGENOM:HOG000263414
HOVERGEN:HBG004501 KO:K16338 CTD:6385 eggNOG:NOG83582
OrthoDB:EOG4MSD0Z OMA:EGRYFSG EMBL:M81786 EMBL:S61868 IPI:IPI00199629
PIR:A42410 RefSeq:NP_036781.1 UniGene:Rn.2029
ProteinModelPortal:P34901 SMR:P34901 IntAct:P34901 MINT:MINT-140728
STRING:P34901 PhosphoSite:P34901 PRIDE:P34901
Ensembl:ENSRNOT00000019386 GeneID:24771 KEGG:rno:24771 UCSC:RGD:3650
InParanoid:P34901 NextBio:604344 Genevestigator:P34901
GermOnline:ENSRNOG00000014297 Uniprot:P34901
Length = 202
Score = 115 (45.5 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYAL-EEP--KRSPASNSY 54
++GG VVG+L A+ +++ +VYRM+KKDEGSY L ++P K++P + Y
Sbjct: 155 IVGG-VVGILFAVFLILLLVYRMKKKDEGSYDLGKKPIYKKAPTNEFY 201
>UNIPROTKB|B4E1S6 [details] [associations]
symbol:SDC4 "Syndecan" species:9606 "Homo sapiens"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0001657
"ureteric bud development" evidence=IEA] [GO:0001968 "fibronectin
binding" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0043034 "costamere"
evidence=IEA] [GO:0045121 "membrane raft" evidence=IEA] [GO:0045860
"positive regulation of protein kinase activity" evidence=IEA]
[GO:0051496 "positive regulation of stress fiber assembly"
evidence=IEA] [GO:0051894 "positive regulation of focal adhesion
assembly" evidence=IEA] InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 GO:GO:0016021 EMBL:CH471077 GO:GO:0009986
GO:GO:0051496 GO:GO:0045860 GO:GO:0005925 GO:GO:0045121
GO:GO:0043034 GO:GO:0001657 InterPro:IPR003585 SMART:SM00294
EMBL:AL021578 GO:GO:0051894 PANTHER:PTHR10915 HOVERGEN:HBG004501
UniGene:Hs.632267 HGNC:HGNC:10661 ChiTaRS:SDC4 EMBL:AK303964
IPI:IPI01012616 SMR:B4E1S6 STRING:B4E1S6 Ensembl:ENST00000537976
Uniprot:B4E1S6
Length = 126
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 21/48 (43%), Positives = 37/48 (77%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYAL-EEP--KRSPASNSY 54
++GG +VG+L A+ +++ ++YRM+KKDEGSY L ++P K++P + Y
Sbjct: 79 IVGG-IVGILFAVFLILLLMYRMKKKDEGSYDLGKKPIYKKAPTNEFY 125
>UNIPROTKB|P31431 [details] [associations]
symbol:SDC4 "Syndecan-4" species:9606 "Homo sapiens"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0043034 "costamere"
evidence=IEA] [GO:0045121 "membrane raft" evidence=IEA] [GO:0045860
"positive regulation of protein kinase activity" evidence=IEA]
[GO:0051496 "positive regulation of stress fiber assembly"
evidence=IEA] [GO:0051894 "positive regulation of focal adhesion
assembly" evidence=IEA] [GO:0001657 "ureteric bud development"
evidence=IEA] [GO:0001968 "fibronectin binding" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0005925
"focal adhesion" evidence=IEA] [GO:0005576 "extracellular region"
evidence=IEA] [GO:0005887 "integral to plasma membrane"
evidence=NAS] [GO:0008150 "biological_process" evidence=ND]
[GO:0005796 "Golgi lumen" evidence=TAS] [GO:0005886 "plasma
membrane" evidence=TAS] [GO:0005975 "carbohydrate metabolic
process" evidence=TAS] [GO:0006024 "glycosaminoglycan biosynthetic
process" evidence=TAS] [GO:0006027 "glycosaminoglycan catabolic
process" evidence=TAS] [GO:0030203 "glycosaminoglycan metabolic
process" evidence=TAS] [GO:0030204 "chondroitin sulfate metabolic
process" evidence=TAS] [GO:0043202 "lysosomal lumen" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0070053
"thrombospondin receptor activity" evidence=IMP]
Reactome:REACT_111217 InterPro:IPR001050 Pfam:PF01034
PROSITE:PS00964 EMBL:CH471077 Reactome:REACT_116125 GO:GO:0005576
GO:GO:0009986 GO:GO:0005887 GO:GO:0005975 GO:GO:0051496
GO:GO:0045860 GO:GO:0005925 GO:GO:0045121 GO:GO:0043034
Pathway_Interaction_DB:syndecan_4_pathway GO:GO:0043202
GO:GO:0005796 GO:GO:0030204 GO:GO:0006024 GO:GO:0006027
GO:GO:0001657 InterPro:IPR003585 SMART:SM00294 GO:GO:0070053
EMBL:AL021578 GO:GO:0051894 PANTHER:PTHR10915
Pathway_Interaction_DB:syndecan_pathway HOGENOM:HOG000263414
HOVERGEN:HBG004501 KO:K16338 CTD:6385 eggNOG:NOG83582
OrthoDB:EOG4MSD0Z EMBL:X67016 EMBL:D13292 EMBL:D79206 EMBL:AK312507
EMBL:CR542045 EMBL:CR542074 EMBL:AK222695 EMBL:AK223243
EMBL:BC030805 EMBL:AA151028 EMBL:AA258502 IPI:IPI00011564
PIR:JC1457 RefSeq:NP_002990.2 UniGene:Hs.632267 PDB:1EJP PDB:1EJQ
PDB:1OBY PDB:1YBO PDBsum:1EJP PDBsum:1EJQ PDBsum:1OBY PDBsum:1YBO
ProteinModelPortal:P31431 SMR:P31431 DIP:DIP-29945N IntAct:P31431
MINT:MINT-140673 STRING:P31431 TCDB:9.A.35.1.1 PhosphoSite:P31431
DMDM:2851418 PaxDb:P31431 PRIDE:P31431 DNASU:6385
Ensembl:ENST00000372733 GeneID:6385 KEGG:hsa:6385 UCSC:uc002xnu.3
GeneCards:GC20M043953 HGNC:HGNC:10661 HPA:CAB013240 HPA:HPA005716
MIM:600017 neXtProt:NX_P31431 PharmGKB:PA35591 InParanoid:P31431
OMA:EGRYFSG PhylomeDB:P31431 ChiTaRS:SDC4 EvolutionaryTrace:P31431
GenomeRNAi:6385 NextBio:24792 PMAP-CutDB:P31431 ArrayExpress:P31431
Bgee:P31431 CleanEx:HS_SDC4 Genevestigator:P31431
GermOnline:ENSG00000124145 Uniprot:P31431
Length = 198
Score = 111 (44.1 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 21/48 (43%), Positives = 37/48 (77%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYAL-EEP--KRSPASNSY 54
++GG +VG+L A+ +++ ++YRM+KKDEGSY L ++P K++P + Y
Sbjct: 151 IVGG-IVGILFAVFLILLLMYRMKKKDEGSYDLGKKPIYKKAPTNEFY 197
>UNIPROTKB|J9NZ79 [details] [associations]
symbol:SDC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016020 "membrane" evidence=IEA] [GO:0008092
"cytoskeletal protein binding" evidence=IEA] InterPro:IPR001050
Pfam:PF01034 GO:GO:0016020 InterPro:IPR003585 SMART:SM00294
GeneTree:ENSGT00530000063116 PANTHER:PTHR10915 KO:K16338 CTD:6385
OMA:EGRYFSG EMBL:AAEX03013965 RefSeq:XP_543017.2
Ensembl:ENSCAFT00000045390 GeneID:485893 KEGG:cfa:485893
Uniprot:J9NZ79
Length = 202
Score = 110 (43.8 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 23/48 (47%), Positives = 36/48 (75%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYAL-EEP--KRSPASNSY 54
++GG V G+L AI +V+ +VYRM+KKDEG+Y L ++P K++P + Y
Sbjct: 155 IVGGGV-GILFAIFLVLLLVYRMKKKDEGTYDLGKKPIYKKAPTNEFY 201
>ZFIN|ZDB-GENE-061111-1 [details] [associations]
symbol:sdc4 "syndecan 4" species:7955 "Danio rerio"
[GO:0008092 "cytoskeletal protein binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0007155 "cell adhesion"
evidence=IDA] [GO:0033627 "cell adhesion mediated by integrin"
evidence=IDA] [GO:0043149 "stress fiber assembly" evidence=IDA]
[GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding"
evidence=IDA] [GO:0016477 "cell migration" evidence=IDA]
[GO:0005925 "focal adhesion" evidence=IDA] [GO:0042060 "wound
healing" evidence=IDA] [GO:0055113 "epiboly involved in
gastrulation with mouth forming second" evidence=IMP]
InterPro:IPR001050 Pfam:PF01034 ZFIN:ZDB-GENE-061111-1
GO:GO:0016477 GO:GO:0016020 GO:GO:0005925 GO:GO:0033627
GO:GO:0005546 GO:GO:0042060 GO:GO:0055113 GO:GO:0043149
PANTHER:PTHR10915 HOGENOM:HOG000263414 HOVERGEN:HBG004501
EMBL:BC124765 IPI:IPI00786627 UniGene:Dr.74531 STRING:Q08BE1
InParanoid:Q08BE1 OMA:ETWMPMK ArrayExpress:Q08BE1 Bgee:Q08BE1
Uniprot:Q08BE1
Length = 258
Score = 96 (38.9 bits), Expect = 0.00019, P = 0.00019
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 8 STVIGGAVVGLLCAILVVMFIVY---RMRKKDEGSYAL-EEP--KRSPASNSY 54
+ VI G VGL+ AIL+++ +V+ R++KKDEGSY L + P K++P + Y
Sbjct: 205 AAVIAGGAVGLVFAILLIILLVHFVLRIKKKDEGSYDLGKTPIYKKAPTTEIY 257
>UNIPROTKB|F1MN62 [details] [associations]
symbol:NRXN1 "Neurexin-1-beta" species:9913 "Bos taurus"
[GO:0016021 "integral to membrane" evidence=IEA] GO:GO:0016021
Gene3D:2.60.120.200 InterPro:IPR008985 InterPro:IPR013320
SUPFAM:SSF49899 InterPro:IPR001791 SMART:SM00282 PROSITE:PS50025
Pfam:PF02210 InterPro:IPR003585 SMART:SM00294
GeneTree:ENSGT00560000076996 IPI:IPI00703941 EMBL:DAAA02030794
EMBL:DAAA02030795 EMBL:DAAA02030796 EMBL:DAAA02030797
EMBL:DAAA02030798 EMBL:DAAA02030799 Ensembl:ENSBTAT00000047691
Uniprot:F1MN62
Length = 295
Score = 93 (37.8 bits), Expect = 0.00052, P = 0.00052
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 219 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYHVDE-SRNYISNSAQSN 267
>UNIPROTKB|G3MWM9 [details] [associations]
symbol:NRXN1 "Neurexin-1-beta" species:9913 "Bos taurus"
[GO:0016021 "integral to membrane" evidence=IEA] GO:GO:0016021
Gene3D:2.60.120.200 InterPro:IPR008985 InterPro:IPR013320
SUPFAM:SSF49899 InterPro:IPR001791 PROSITE:PS50025 Pfam:PF02210
InterPro:IPR003585 SMART:SM00294 GeneTree:ENSGT00560000076996
EMBL:DAAA02030794 EMBL:DAAA02030795 EMBL:DAAA02030796
EMBL:DAAA02030797 EMBL:DAAA02030798 EMBL:DAAA02030799
Ensembl:ENSBTAT00000064537 OMA:IAIDEPN Uniprot:G3MWM9
Length = 325
Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 249 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYHVDE-SRNYISNSAQSN 297
>UNIPROTKB|F6RU36 [details] [associations]
symbol:F6RU36 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016021 "integral to membrane" evidence=IEA]
GO:GO:0016021 GO:GO:0043499 GO:GO:0042734 GO:GO:0051968
Gene3D:2.60.120.200 InterPro:IPR008985 InterPro:IPR013320
SUPFAM:SSF49899 GO:GO:0045184 GO:GO:0097120 GO:GO:0051965
GO:GO:0007157 InterPro:IPR001791 SMART:SM00282 GO:GO:0016339
GO:GO:0090004 GO:GO:0090129 GO:GO:0007269 GO:GO:0044295
GO:GO:0007158 GO:GO:0005246 Pfam:PF02210 InterPro:IPR003585
SMART:SM00294 GO:GO:0051490 GO:GO:2000311 GO:GO:2000310
GO:GO:2000463 GO:GO:0097105 GO:GO:0097119 GO:GO:0097104
GO:GO:0097091 GO:GO:0097114 GO:GO:0097116
GeneTree:ENSGT00560000076996 GO:GO:0097118 GO:GO:0097112
GO:GO:0097117 IPI:IPI00698415 EMBL:DAAA02029776 EMBL:DAAA02029777
EMBL:DAAA02029778 EMBL:DAAA02029779 EMBL:DAAA02029780
EMBL:DAAA02029781 EMBL:DAAA02029782 EMBL:DAAA02029783
EMBL:DAAA02029784 EMBL:DAAA02029785 EMBL:DAAA02029786
EMBL:DAAA02029787 EMBL:DAAA02029788 EMBL:DAAA02029789
EMBL:DAAA02029790 EMBL:DAAA02029791 EMBL:DAAA02029792
EMBL:DAAA02029793 EMBL:DAAA02029794 EMBL:DAAA02029795
EMBL:DAAA02029796 EMBL:DAAA02029797 EMBL:DAAA02029798
EMBL:DAAA02029799 EMBL:DAAA02029800 EMBL:DAAA02029801
EMBL:DAAA02029802 EMBL:DAAA02029803 Ensembl:ENSBTAT00000022475
OMA:LIECEPS Uniprot:F6RU36
Length = 426
Score = 93 (37.8 bits), Expect = 0.00092, P = 0.00092
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 351 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYQVDET-RNYISNSAQSN 399
>UNIPROTKB|P58400 [details] [associations]
symbol:NRXN1 "Neurexin-1-beta" species:9606 "Homo sapiens"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0030054 "cell
junction" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0001525 "angiogenesis" evidence=ISS] [GO:0097119 "postsynaptic
density protein 95 clustering" evidence=ISS] [GO:0016339
"calcium-dependent cell-cell adhesion" evidence=ISS] [GO:0007158
"neuron cell-cell adhesion" evidence=ISS;TAS] [GO:0090004 "positive
regulation of establishment of protein localization to plasma
membrane" evidence=ISS] [GO:2000311 "regulation of
alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective
glutamate receptor activity" evidence=ISS] [GO:0097120 "receptor
localization to synapse" evidence=ISS] [GO:0048306
"calcium-dependent protein binding" evidence=ISS] [GO:0097109
"neuroligin family protein binding" evidence=ISS] [GO:0097116
"gephyrin clustering" evidence=ISS] [GO:0042734 "presynaptic
membrane" evidence=TAS] [GO:0023041 "neuronal signal transduction"
evidence=TAS] [GO:0005102 "receptor binding" evidence=ISS]
[GO:0050839 "cell adhesion molecule binding" evidence=ISS]
[GO:0030139 "endocytic vesicle" evidence=ISS] [GO:0009986 "cell
surface" evidence=ISS] [GO:0035176 "social behavior" evidence=IMP]
[GO:0060325 "face morphogenesis" evidence=IMP] [GO:0043473
"pigmentation" evidence=IMP] [GO:0097105 "presynaptic membrane
assembly" evidence=ISS] [GO:0097091 "synaptic vesicle clustering"
evidence=ISS] [GO:0097114 "N-methyl-D-aspartate receptor
clustering" evidence=ISS] [GO:0097117 "guanylate kinase-associated
protein clustering" evidence=ISS] [GO:0045184 "establishment of
protein localization" evidence=ISS] [GO:2000463 "positive
regulation of excitatory postsynaptic membrane potential"
evidence=ISS] [GO:2000310 "regulation of N-methyl-D-aspartate
selective glutamate receptor activity" evidence=ISS] [GO:0051968
"positive regulation of synaptic transmission, glutamatergic"
evidence=ISS] [GO:0097104 "postsynaptic membrane assembly"
evidence=ISS] [GO:0097112 "gamma-aminobutyric acid receptor
clustering" evidence=ISS] [GO:0097118 "neuroligin clustering"
evidence=ISS] [GO:0007157 "heterophilic cell-cell adhesion"
evidence=ISS] [GO:0044295 "axonal growth cone" evidence=ISS]
GO:GO:0016021 GO:GO:0005886 GO:GO:0009986 GO:GO:0046872
GO:GO:0030054 GO:GO:0005102 GO:GO:0042734 GO:GO:0051968
GO:GO:0001525 Gene3D:2.60.120.200 InterPro:IPR008985
InterPro:IPR013320 SUPFAM:SSF49899 GO:GO:0045184 GO:GO:0035176
GO:GO:0030139 GO:GO:0097120 GO:GO:0050839 GO:GO:0007157
InterPro:IPR001791 SMART:SM00282 PROSITE:PS50025 GO:GO:0016339
GO:GO:0090004 GO:GO:0048306 GO:GO:0060325 GO:GO:0044295
GO:GO:0007158 GO:GO:0043473 Pfam:PF02210 InterPro:IPR003585
SMART:SM00294 GO:GO:2000311 GO:GO:2000310 GO:GO:2000463
GO:GO:0097105 GO:GO:0023041 GO:GO:0097119 GO:GO:0097104
GO:GO:0097091 PDB:3B3Q PDBsum:3B3Q GO:GO:0097114 GO:GO:0097116
HOVERGEN:HBG052670 KO:K07377 CTD:9378 EMBL:AC068725 EMBL:AC069550
EMBL:AC078994 RefSeq:NP_620072.1 UniGene:Hs.637685 GeneID:9378
KEGG:hsa:9378 GeneCards:GC02M050145 HGNC:HGNC:8008 MIM:600565
ChiTaRS:NRXN1 GenomeRNAi:9378 NextBio:35134 CleanEx:HS_NRXN1
GO:GO:0097109 GO:GO:0097118 EMBL:AF064842 IPI:IPI00428511
ProteinModelPortal:P58400 SMR:P58400 DIP:DIP-46402N STRING:P58400
DMDM:17368284 PRIDE:P58400 Ensembl:ENST00000342183 UCSC:uc010fbp.3
neXtProt:NX_P58400 HOGENOM:HOG000230482 EvolutionaryTrace:P58400
ArrayExpress:P58400 Bgee:P58400 Genevestigator:P58400
GermOnline:ENSG00000179915 GO:GO:0097112 GO:GO:0097117
Uniprot:P58400
Length = 442
Score = 93 (37.8 bits), Expect = 0.00097, P = 0.00097
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN 57
T V+G LC IL++++ +Y+ R +DEGSY ++E R+ SNS N
Sbjct: 366 TGMVVGIVAAAALC-ILILLYAMYKYRNRDEGSYHVDE-SRNYISNSAQSN 414
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.133 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 64 64 0.00091 102 3 11 22 0.38 28
29 0.44 28
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 46
No. of states in DFA: 428 (46 KB)
Total size of DFA: 72 KB (2061 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 8.57u 0.07s 8.64t Elapsed: 00:00:05
Total cpu time: 8.57u 0.07s 8.64t Elapsed: 00:00:06
Start: Thu Aug 15 14:13:25 2013 End: Thu Aug 15 14:13:31 2013