RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1892
(64 letters)
>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain. Syndecans are transmembrane
heparin sulfate proteoglycans which are implicated in
the binding of extracellular matrix components and
growth factors.
Length = 207
Score = 103 bits (258), Expect = 8e-30
Identities = 34/54 (62%), Positives = 39/54 (72%), Gaps = 3/54 (5%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN-SNREF 62
VI G VVGLL A+ +VMF+VYRM+KKDEGSYALEEPK A+ Y K EF
Sbjct: 156 VIAGGVVGLLFAVFLVMFLVYRMKKKDEGSYALEEPK--QANAGYQKPAKQEEF 207
>gnl|CDD|128590 smart00294, 4.1m, putative band 4.1 homologues' binding motif.
Length = 19
Score = 34.0 bits (79), Expect = 2e-04
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 30 YRMRKKDEGSYALEEPK 46
YR + +DEGSY EPK
Sbjct: 2 YRYKHRDEGSYHTHEPK 18
>gnl|CDD|163005 TIGR02762, TraL_TIGR, type IV conjugative transfer system protein
TraL. This protein is part of the type IV secretion
system for conjugative plasmid transfer. The function
of the TraL protein is unknown [Cellular processes,
Conjugation].
Length = 95
Score = 28.9 bits (65), Expect = 0.069
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 3 IPLATSTVIG---GAVVGLLCAILVVMFIVYRMR--KKDEGSYAL 42
+P AT IG G + L VM I R+R K EG L
Sbjct: 24 LPGATLFGIGILSGKALIGLILGAAVMLIWKRLRRIKGGEGENFL 68
>gnl|CDD|232845 TIGR00145, TIGR00145, FTR1 family protein. A characterized member
from yeast acts as oxidase-coupled high affinity iron
transporter. Note that the apparent member from E. coli
K12-MG1655 has a frameshift by homology with member
sequences from other species [Unknown function,
General].
Length = 283
Score = 28.9 bits (65), Expect = 0.11
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 2 TIPLATSTVIGGAVVGLLCAILVVMFIVY 30
+ IG AV GL+ A++V + +
Sbjct: 145 QQGSHATAYIGPAVAGLIVAVVVGVLLYR 173
>gnl|CDD|163482 TIGR03770, anch_rpt_perm, anchored repeat-type ABC transporter,
permease subunit. This protein family is the permease
subunit of binding protein-dependent ABC transporter
complex that strictly co-occurs with TIGR03769.
TIGRFAMs model TIGR03769 describes a protein domain
that occurs singly or as one of up to three repeats in
proteins of a number of Actinobacteria, including
Propionibacterium acnes KPA171202. The TIGR03769 domain
occurs both in the adjacent gene for the
substrate-binding protein and in additional (often
nearby) proteins, often with LPXTG-like sortase
recognition signals. Homologous permease subunits
outside the scope of this family include manganese
transporter MntB in Synechocystis sp. PCC 6803 and
chelated iron transporter subunits. The function of
this transporter complex is unknown [Transport and
binding proteins, Unknown substrate].
Length = 270
Score = 27.8 bits (62), Expect = 0.29
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 LATSTVIGGAVVGLLCAILVVMFIVYRMRKKD 36
L S ++GGAV G+ AIL+ +F R K+D
Sbjct: 64 LQGSLLLGGAVAGVATAILIAVFSQNRRLKED 95
>gnl|CDD|179620 PRK03642, PRK03642, putative periplasmic esterase; Provisional.
Length = 432
Score = 27.1 bits (60), Expect = 0.62
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 29 VYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 64
+ KK +GS L P ++ + Y SN + YA
Sbjct: 73 AWGYAKKYDGSTLLAHPVKATTNTMYDLASNTKMYA 108
>gnl|CDD|213052 cd12087, TM_EGFR-like, Transmembrane domain of the Epidermal
Growth Factor Receptor family of Protein Tyrosine
Kinases. PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EGFR (HER, ErbB)
subfamily members include EGFR (HER1, ErbB1), HER2
(ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar
proteins. They are receptor PTKs (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane (TM) helix, and a cytoplasmic region with
a tyr kinase domain and a regulatory C-terminal tail.
They are activated by ligand-induced dimerization,
resulting in the phosphorylation of tyr residues in the
C-terminal tail, which serve as binding sites for
downstream signaling molecules. Collectively, they can
recognize a variety of ligands including EGF, TGFalpha,
and neuregulins, among others. All four subfamily
members can form homo- or heterodimers. HER3 contains
an impaired kinase domain and depends on its
heterodimerization partner for activation. EGFR
subfamily members are involved in signaling pathways
leading to a broad range of cellular responses
including cell proliferation, differentiation,
migration, growth inhibition, and apoptosis. The TM
domain not only serves as a membrane anchor, but also
plays an important role in receptor dimerization and
optimal activation. Mutations in the TM domain of EGFR
family RTKs have been associated with increased breast
cancer risk.
Length = 38
Score = 24.8 bits (55), Expect = 0.93
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKK 35
T+++ G V GLL +++ + + R++
Sbjct: 5 TTSIAAGVVGGLLVLVILGLIVFLFRRRR 33
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 25.6 bits (57), Expect = 1.6
Identities = 5/40 (12%), Positives = 15/40 (37%)
Query: 11 IGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPA 50
+ G L ++++ F++ + L E + +
Sbjct: 440 LIKLAAGALLILILIFFVLRPRLRPLLPEEELAEEEAAAE 479
>gnl|CDD|236800 PRK10935, PRK10935, nitrate/nitrite sensor protein NarQ;
Provisional.
Length = 565
Score = 25.6 bits (57), Expect = 1.6
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKK 35
+ +++GL+ + +V F V R++
Sbjct: 150 LAAISLLGLILILTLVFFTVRFTRRQ 175
>gnl|CDD|217447 pfam03239, FTR1, Iron permease FTR1 family.
Length = 284
Score = 25.8 bits (57), Expect = 1.6
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 4 PLATSTVIGGAVVGLLCAILVVMFIVY 30
S G V+G A+++ + I
Sbjct: 150 VKRASAYPLGVVLGAATAVVLGVLIYR 176
>gnl|CDD|227368 COG5035, CDC50, Cell cycle control protein [Cell division and
chromosome partitioning / Transcription / Signal
transduction mechanisms].
Length = 372
Score = 25.6 bits (56), Expect = 1.6
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 12/51 (23%)
Query: 2 TIPLATSTVIGGA---------VVGLLCAILVVMFIV---YRMRKKDEGSY 40
+I L T++VIGG +VG +CA+L ++F++ ++ RK + SY
Sbjct: 316 SIVLTTNSVIGGKNYFLGIVYLIVGGICALLGLIFLIKWLFKPRKMADHSY 366
>gnl|CDD|223836 COG0765, HisM, ABC-type amino acid transport system, permease
component [Amino acid transport and metabolism].
Length = 222
Score = 25.5 bits (57), Expect = 1.7
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 1 MTIPLATSTVIGGAVVGLLCAIL 23
+T+ L +++ G V+GLL A++
Sbjct: 24 VTLLLTLLSIVLGLVLGLLLALM 46
>gnl|CDD|217523 pfam03381, CDC50, LEM3 (ligand-effect modulator 3) family / CDC50
family. Members of this family have been predicted to
contain transmembrane helices. The family member LEM3 is
a ligand-effect modulator, mutation of which increases
glucocorticoid receptor activity in response to
dexamethasone and also confers increased activity on
other intracellular receptors including the
progesterone, oestrogen and mineralocorticoid receptors.
LEM3 is thought to affect a downstream step in the
glucocorticoid receptor pathway. Factors that modulate
ligand responsiveness are likely to contribute to the
context-specific actions of the glucocorticoid receptor
in mammalian cells. The products of genes YNR048w,
YNL323w and YCR094w (CDC50) show redundancy of function
and are involved in regulation of transcription via
CDC39. CDC39 (also known as NOT1) is normally a negative
regulator of transcription either by affecting the
general RNA polymerase II machinery or by altering
chromatin structure. One function of CDC39 is to block
activation of the mating response pathway in the absence
of pheromone, and mutation causes arrest in G1 by
activation of the pathway. It may be that the
cold-sensitive arrest in G1 noticed in CDC50 mutants may
be due to inactivation of CDC39. The effects of LEM3 on
glucocorticoid receptor activity may also be due to
effects on transcription via CDC39.
Length = 275
Score = 25.7 bits (57), Expect = 1.7
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 9/39 (23%)
Query: 5 LATSTVIGG---------AVVGLLCAILVVMFIVYRMRK 34
L+T++ GG VVG +C +L ++F++ + K
Sbjct: 229 LSTTSWFGGKNPFLGIAYLVVGGICFLLGILFLIRHLFK 267
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 25.4 bits (56), Expect = 2.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 8 STVIGGAVVGLLCAI 22
+IGG + GL CA+
Sbjct: 3 VIIIGGGLAGLSCAL 17
>gnl|CDD|219141 pfam06697, DUF1191, Protein of unknown function (DUF1191). This
family contains hypothetical plant proteins of unknown
function.
Length = 278
Score = 25.1 bits (55), Expect = 2.5
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 5 LATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEG 38
+ V G ++GLL LV + Y+ +K+ E
Sbjct: 215 VVGGVVGGVGLLGLLAV-LVARLVRYKRKKRREE 247
>gnl|CDD|216421 pfam01299, Lamp, Lysosome-associated membrane glycoprotein (Lamp).
Length = 305
Score = 25.1 bits (55), Expect = 2.5
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 1 MTIPLATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGS 39
M +P+A +G A+ GL IL+V+ I Y + ++ +
Sbjct: 270 MLVPIA----VGAALAGL---ILIVL-IAYLIGRRRSHA 300
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 25.2 bits (56), Expect = 2.5
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 15/38 (39%)
Query: 9 TVIGGAVVGLLCA--------------ILVVMFIVYRM 32
TVIGGA+VGLL +L V IVY++
Sbjct: 404 TVIGGAIVGLLAVLADLLGALGGGTGLLLTVS-IVYQL 440
>gnl|CDD|114659 pfam05950, Orthopox_A36R, Orthopoxvirus A36R protein. This
family consists of several Orthopoxvirus A36R proteins.
The A36R protein is predicted to be a type Ib membrane
protein.
Length = 158
Score = 24.7 bits (53), Expect = 3.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 8/35 (22%)
Query: 1 MTIPLATSTVIGGAVVGLLCAILVVMFIVYRMRKK 35
M +PL T TV+ G + +V +I+Y RKK
Sbjct: 2 MLVPLITVTVVAGTI--------LVCYILYICRKK 28
>gnl|CDD|223014 PHA03231, PHA03231, glycoprotein BALF4; Provisional.
Length = 829
Score = 24.9 bits (55), Expect = 3.3
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 12 GGAVVGLLC-AILVVMFIVYR 31
GG +GLL A+LV +F+ YR
Sbjct: 705 GGLAIGLLVIAVLVAVFLAYR 725
>gnl|CDD|235955 PRK07190, PRK07190, hypothetical protein; Provisional.
Length = 487
Score = 24.8 bits (54), Expect = 3.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 1 MTIPLATSTVIGGAVVGLLCAIL 23
M+ + +IG VGL+CA L
Sbjct: 1 MSTQVTDVVIIGAGPVGLMCAYL 23
>gnl|CDD|116649 pfam08039, Mit_proteolip, Mitochondrial proteolipid. This family
consists of proteins with similarity to the
mitochondrial proteolipids. Mitochondrial proteolipid
consists of about 60 amino acids residues and is about
6.8 kDa in size.
Length = 60
Score = 23.9 bits (51), Expect = 3.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 27 FIVYRMRKKDEGSYALEEPKRSPA 50
FIVY++R D+ S AL+ +PA
Sbjct: 33 FIVYKIRAADKRSKALKASAAAPA 56
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme
metabolism / Energy production and conversion].
Length = 387
Score = 24.7 bits (54), Expect = 3.6
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 10 VIGGAVVGLLCAIL 23
++G GL A+
Sbjct: 7 IVGAGPAGLALALA 20
>gnl|CDD|216018 pfam00606, Glycoprotein_B, Herpesvirus Glycoprotein B. This family
of proteins contains a transmembrane region.
Length = 711
Score = 24.8 bits (55), Expect = 3.7
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 11 IGGAVVGLLC-AILVVMFIVYR 31
GG ++ LL A LV +F+ YR
Sbjct: 665 FGGLLIILLVLAGLVAVFLAYR 686
>gnl|CDD|221699 pfam12669, P12, Virus attachment protein p12 family. This family
of proteins are related to Virus attachment protein p12
from the African swine fever virus. The family appears
to contain an N-terminal signal peptide followed by a
short cysteine rich region. The cysteine rich region is
extremely variable and it is possible that only the
N-terminal region is homologous.
Length = 52
Score = 23.8 bits (52), Expect = 3.8
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 15 VVGLLCAILVVMFIVYRMRKK 35
++GL+ A V ++ + KK
Sbjct: 3 IIGLIIAAAVAYVLIRKFFKK 23
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 24.7 bits (54), Expect = 3.9
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 7 TSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNS 58
+ T+ G + L+C L+ +F+ +RK+ E + RS A+ S++ S
Sbjct: 277 SPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFE-----RSAAATSFLVES 323
>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (encoded by the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (encoded by the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and -2. SMCT1(encoded by
the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. SMCT2 (encoded by the SLC5A12
gene) is a low-affinity transporter for short-chain
fatty acids, lactate, pyruvate, and nicotinate. This
subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 522
Score = 24.7 bits (55), Expect = 4.0
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 1 MTIPLATSTVIGGAVVGLLCAILVVMFIVY 30
M P A S GA+VGLL + ++I
Sbjct: 421 MFFPWANSK---GALVGLLVGLAFSLWIGI 447
>gnl|CDD|215376 PLN02699, PLN02699, Bifunctional molybdopterin
adenylyltransferase/molybdopterin molybdenumtransferase.
Length = 659
Score = 24.4 bits (53), Expect = 4.3
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 5 LATSTVIGGAVVGLLCAILVVMFIVYRMRK------KDEGSYALEEPKRSPASNSYMKNS 58
L +G + +GLL + V M VY DE L EP +++S
Sbjct: 154 LKAGERLGASEIGLLATVGVTMVKVYPRPTVAILSTGDE----LVEPTTGTLGRGQIRDS 209
Query: 59 NR 60
NR
Sbjct: 210 NR 211
>gnl|CDD|224099 COG1178, ThiP, ABC-type Fe3+ transport system, permease component
[Inorganic ion transport and metabolism].
Length = 540
Score = 24.5 bits (54), Expect = 4.6
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 2 TIPLATSTVIGGAVVGLLCAILVVMFIVYRMRKK 35
T+ LA + V+G+ A L+ Y +
Sbjct: 61 TLILAVLVTLLSVVLGIPLAWLLSR---YDFPGR 91
>gnl|CDD|217633 pfam03600, CitMHS, Citrate transporter.
Length = 377
Score = 24.1 bits (53), Expect = 4.9
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 3 IPLATSTVIGGAVVGLLCAILVVMFIVYRMRKKD 36
+ + + G++ +L+V+ Y + KK+
Sbjct: 163 LNFFPTDFFAPMIPGVIAGLLIVILGAYYLGKKE 196
>gnl|CDD|216842 pfam02009, Rifin_STEVOR, Rifin/stevor family. Several multicopy
gene families have been described in Plasmodium
falciparum, including the stevor family of subtelomeric
open reading frames and the rif interspersed repetitive
elements. Both families contain three predicted
transmembrane segments. It has been proposed that stevor
and rif are members of a larger superfamily that code
for variant surface antigens.
Length = 290
Score = 24.2 bits (53), Expect = 5.1
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 6 ATSTVIGGAVVGLLCAILVVMFIVY---RMRKKDEGSYALE 43
+ A+ L+ I++VM I+Y R R+K + L+
Sbjct: 245 LFEPIYASAIAILI--IVLVMLIIYLILRYRRKKKMKKKLQ 283
>gnl|CDD|111345 pfam02439, Adeno_E3_CR2, Adenovirus E3 region protein CR2. Early
region 3 (E3) of human adenoviruses (Ads) codes for
proteins that appear to control viral interactions with
the host. This region called CR2 (conserved region 1)
is found in Adenovirus type 19 (a subgroup D virus) 49
Kd protein in the E3 region. CR2 is also found in the
20.1 Kd protein of subgroup B adenoviruses. The
function of this 50 amino acid region is unknown.
Length = 38
Score = 22.7 bits (49), Expect = 6.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 3 IPLATSTVIGGAVVGLLCAILVVMFIVYRMRK 34
IP +T +I VVG+ I+ + + RK
Sbjct: 1 IPSSTIAIIVAVVVGMAIIIICMFYYACCYRK 32
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional.
Length = 445
Score = 24.0 bits (52), Expect = 6.5
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 2 TIPLATSTVIGGAVVGLLCAILVVM-----FIVYRMRKKD 36
++ L ST + + GL+CA++V+ + + R +
Sbjct: 401 SLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSRQ 440
>gnl|CDD|183131 PRK11427, PRK11427, multidrug efflux system protein MdtO;
Provisional.
Length = 683
Score = 24.1 bits (52), Expect = 6.9
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 11 IGGAVVGLLCAILVVMFI 28
GGA G + A+L + +
Sbjct: 402 FGGAFCGAILALLFTLLV 419
>gnl|CDD|177239 MTH00191, CYTB, cytochrome b; Provisional.
Length = 365
Score = 23.7 bits (52), Expect = 7.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 12 GGAVVGLLCAILVVMFI 28
G V+ L+ +ILV+ +
Sbjct: 285 LGGVLALVMSILVLFLL 301
>gnl|CDD|238813 cd01610, PAP2_like, PAP2_like proteins, a super-family of histidine
phosphatases and vanadium haloperoxidases, includes type
2 phosphatidic acid phosphatase or lipid phosphate
phosphatase (LPP), Glucose-6-phosphatase,
Phosphatidylglycerophosphatase B and bacterial acid
phosphatase, vanadium chloroperoxidases, vanadium
bromoperoxidases, and several other mostly
uncharacterized subfamilies. Several members of this
superfamily have been predicted to be transmembrane
proteins.
Length = 122
Score = 23.6 bits (51), Expect = 7.1
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 10 VIGGAVVGLLCAILVV 25
V+ GA++G+L A+LV+
Sbjct: 107 VLAGALLGILVALLVL 122
>gnl|CDD|239484 cd03390, PAP2_containing_1_like, PAP2, subfamily similar to human
phosphatidic_acid_phosphatase_type_2_domain_containing_1
. Most likely membrane-associated phosphatidic acid
phosphatases. Plant members of this group are
constitutively expressed in many tissues and exhibit
both diacylglycerol pyrophosphate phosphatase activity
as well as phosphatidate (PA) phosphatase activity, they
may have a more generic housekeeping role in lipid
metabolism.
Length = 193
Score = 23.7 bits (52), Expect = 7.9
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 5/23 (21%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRM 32
VI G+++GL+ A ++ YR
Sbjct: 175 VIAGSLIGLIIA-----YLSYRQ 192
>gnl|CDD|224967 COG2056, COG2056, Predicted permease [General function prediction
only].
Length = 444
Score = 23.8 bits (52), Expect = 8.2
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 2 TIPLATSTVIGGAVVGLLCAILVVMFIVYR 31
+P A G +VGLL AI F+ YR
Sbjct: 189 QVPKAMWIPGLGMIVGLLLAI----FVSYR 214
>gnl|CDD|217407 pfam03176, MMPL, MMPL family. Members of this family are putative
integral membrane proteins from bacteria. Several of the
members are mycobacterial proteins. Many of the proteins
contain two copies of this aligned region. The function
of these proteins is not known, although it has been
suggested that they may be involved in lipid transport.
Length = 332
Score = 23.8 bits (52), Expect = 8.4
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 14 AVVGLLCAILVVMFIVYR 31
L I +++ IVYR
Sbjct: 147 IEAVTLVVIFIILLIVYR 164
>gnl|CDD|219372 pfam07314, DUF1461, Protein of unknown function (DUF1461). This
family contains a number of hypothetical bacterial
proteins of unknown function approximately 200 residues
long. These are possibly integral membrane proteins.
Length = 180
Score = 23.7 bits (52), Expect = 8.6
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 10 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSY 40
+ G +V + +L ++ +Y ++KK +
Sbjct: 92 FLLGYLVFNILLLLALLIFLYLLKKKKKWKL 122
>gnl|CDD|233768 TIGR02185, Trep_Strep, conserved hypothetical integral membrane
protein TIGR02185. This family consists of strongly
hydrophobic proteins about 190 amino acids in length
with a strongly basic motif near the C-terminus. If is
found in rather few species, but in paralogous families
of 12 members in the oral pathogenic spirochaete
Treponema denticola and 2 in Streptococcus pneumoniae
R6 [Cell envelope, Other].
Length = 189
Score = 23.4 bits (51), Expect = 8.8
Identities = 4/33 (12%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 3 IPLATSTVIGGAVVGLLCAILVVMFIVYRMRKK 35
+ + + L I + +V ++ K+
Sbjct: 29 TTGFFAHLFSPGITAFLVGI-IFFLMVAKVPKR 60
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.374
Gapped
Lambda K H
0.267 0.0820 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,154,504
Number of extensions: 221913
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 711
Number of HSP's successfully gapped: 62
Length of query: 64
Length of database: 10,937,602
Length adjustment: 35
Effective length of query: 29
Effective length of database: 9,385,212
Effective search space: 272171148
Effective search space used: 272171148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.0 bits)