RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1892
         (64 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 26.3 bits (57), Expect = 0.22
 Identities = 5/27 (18%), Positives = 13/27 (48%)

Query: 10  VIGGAVVGLLCAILVVMFIVYRMRKKD 36
           +    ++GL   +  ++F+  R R  +
Sbjct: 481 ITRFYIIGLFLFLTFLVFLAERRRNHE 507


>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 189

 Score = 24.0 bits (51), Expect = 1.3
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 5/25 (20%)

Query: 11  IGGAVVGLLCAILVVMFIVYRMRKK 35
           I G +VGL+       FI  ++RK 
Sbjct: 167 ISGLIVGLIWG-----FIDSKLRKN 186


>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase
          DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
          Length = 265

 Score = 23.9 bits (50), Expect = 1.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query: 10 VIGGAVVGLLCAIL 23
          V+GG++ GL  A++
Sbjct: 9  VVGGSISGLTAALM 22


>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase
          {Soil-living yeast (Trichosporon cutaneum) [TaxId:
          5554]}
          Length = 360

 Score = 23.5 bits (49), Expect = 2.4
 Identities = 4/14 (28%), Positives = 8/14 (57%)

Query: 10 VIGGAVVGLLCAIL 23
          ++G    GL+ A +
Sbjct: 12 IVGAGPAGLMAARV 25


>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
          sp., strain b0618 [TaxId: 1409]}
          Length = 281

 Score = 23.5 bits (49), Expect = 2.4
 Identities = 3/13 (23%), Positives = 6/13 (46%)

Query: 10 VIGGAVVGLLCAI 22
          V+G   +G+    
Sbjct: 8  VVGAGSMGMAAGY 20


>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase,
          N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 246

 Score = 23.3 bits (49), Expect = 2.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 9  TVIGGAVVGLLCAI 22
           VIG  V+GL  A+
Sbjct: 4  VVIGAGVIGLSTAL 17


>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 288

 Score = 23.5 bits (49), Expect = 2.5
 Identities = 5/14 (35%), Positives = 8/14 (57%)

Query: 10 VIGGAVVGLLCAIL 23
          + G  + GL CA+ 
Sbjct: 6  IAGAGIGGLSCALA 19


>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
          N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
          Length = 268

 Score = 23.5 bits (49), Expect = 2.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 10 VIGGAVVGLLCAI 22
          V+G  V+GL  A+
Sbjct: 11 VLGSGVIGLSSAL 23


>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase
          {Arthrobacter globiformis [TaxId: 1665]}
          Length = 305

 Score = 23.2 bits (48), Expect = 3.0
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 10 VIGGAVVGLLCA 21
          +IG  +VG   A
Sbjct: 6  IIGAGIVGTNLA 17


>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO
          {Bacillus sp. [TaxId: 1409]}
          Length = 276

 Score = 23.2 bits (48), Expect = 3.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 10 VIGGAVVGLLCAI 22
          VIGG ++G   A 
Sbjct: 9  VIGGGIIGSAIAY 21


>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate
          hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 292

 Score = 23.0 bits (48), Expect = 3.1
 Identities = 6/14 (42%), Positives = 7/14 (50%)

Query: 10 VIGGAVVGLLCAIL 23
          +IG    GLL   L
Sbjct: 7  IIGAGPSGLLLGQL 20


>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma
           chain {Escherichia coli [TaxId: 562]}
          Length = 225

 Score = 22.9 bits (49), Expect = 3.2
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 10  VIGGAVVGLLCAILVVMFIVYRMRKK 35
           +  G   G+LC I  V+ +  R+   
Sbjct: 91  MFAGGASGVLCLIGGVLLLKRRLFSP 116


>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
          cereus [TaxId: 1396]}
          Length = 251

 Score = 23.1 bits (48), Expect = 3.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 10 VIGGAVVGLLCAI 22
          VIGG   GL+ AI
Sbjct: 7  VIGGGPSGLMAAI 19


>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
          Length = 180

 Score = 22.4 bits (47), Expect = 4.8
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 11  IGGAVVGLLCAILVVM 26
           I G  VGL  A +  +
Sbjct: 165 IAGLAVGLAMAFVDSL 180


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 212,461
Number of extensions: 6769
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 16
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)