Diaphorina citri psyllid: psy1892


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60----
MTIPLATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
****LATSTVIGGAVVGLLCAILVVMFIVYRMRKKD****************************
xxxxxxHHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTIPLATSTVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Probable syndecan Cell surface proteoglycan that bears heparan sulfate.confidentP50605
Syndecan-1 Cell surface proteoglycan that bears both heparan sulfate and chondroitin sulfate and that links the cytoskeleton to the interstitial matrix.confidentP18828
Syndecan-1 Cell surface proteoglycan that bears both heparan sulfate and chondroitin sulfate and that links the cytoskeleton to the interstitial matrix.confidentP26260

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0045202 [CC]synapseprobableGO:0005575
GO:0043202 [CC]lysosomal lumenprobableGO:0005737, GO:0044446, GO:0000323, GO:0043231, GO:0043233, GO:0005773, GO:0044464, GO:0043229, GO:0005775, GO:0005622, GO:0005764, GO:0070013, GO:0044444, GO:0044437, GO:0031974, GO:0005575, GO:0044424, GO:0005623, GO:0043227, GO:0043226, GO:0044422
GO:0009897 [CC]external side of plasma membraneprobableGO:0009986, GO:0016020, GO:0044464, GO:0005623, GO:0005575, GO:0071944, GO:0005886, GO:0044425, GO:0044459
GO:0097009 [BP]energy homeostasisprobableGO:0032501, GO:0048871, GO:0044707, GO:0042592, GO:0008150, GO:0065007, GO:0065008, GO:0044699
GO:0043025 [CC]neuronal cell bodyprobableGO:0005575, GO:0097458, GO:0044297, GO:0005623, GO:0044464
GO:0006027 [BP]glycosaminoglycan catabolic processprobableGO:1901575, GO:0030203, GO:1901565, GO:1901136, GO:1901135, GO:0043170, GO:0008150, GO:0071704, GO:0006807, GO:0009056, GO:0008152, GO:0006022, GO:1901564, GO:0006026, GO:0009057
GO:0006024 [BP]glycosaminoglycan biosynthetic processprobableGO:1901576, GO:0044710, GO:0030203, GO:1901564, GO:1901566, GO:1901137, GO:1901135, GO:0043170, GO:0008150, GO:0071704, GO:0009058, GO:0009059, GO:0006807, GO:0008152, GO:0006022, GO:0006023
GO:0044246 [BP]regulation of multicellular organismal metabolic processprobableGO:0008150, GO:0065007, GO:0051239, GO:0019222, GO:0050789
GO:0045887 [BP]positive regulation of synaptic growth at neuromuscular junctionprobableGO:0048639, GO:0048638, GO:0019226, GO:0045927, GO:0035637, GO:0050803, GO:0008582, GO:0050807, GO:0048634, GO:0051128, GO:0032501, GO:0023052, GO:0051147, GO:0050789, GO:0044699, GO:0051962, GO:0040008, GO:0060284, GO:0065007, GO:0048518, GO:0048641, GO:0065008, GO:0051130, GO:0016202, GO:0009987, GO:0050793, GO:0050877, GO:0048742, GO:1901861, GO:0050794, GO:0051153, GO:0045595, GO:0008150, GO:0051239, GO:0007268, GO:0007267, GO:0007154, GO:0003008, GO:0044700, GO:0044707, GO:0051094, GO:0051963, GO:0044087, GO:0051960, GO:2000026, GO:0051965, GO:0044763, GO:0044089, GO:0048522
GO:0050908 [BP]detection of light stimulus involved in visual perceptionprobableGO:0009582, GO:0009581, GO:0050962, GO:0009583, GO:0009584, GO:0051606, GO:0009605, GO:0009628, GO:0050877, GO:0050896, GO:0007601, GO:0007600, GO:0050953, GO:0008150, GO:0032501, GO:0050906, GO:0009314, GO:0009416, GO:0044707, GO:0044699, GO:0003008
GO:0043234 [CC]protein complexprobableGO:0005575, GO:0032991
GO:0005925 [CC]focal adhesionprobableGO:0070161, GO:0005575, GO:0005912, GO:0005924, GO:0030054, GO:0030055
GO:0030204 [BP]chondroitin sulfate metabolic processprobableGO:0030203, GO:0006807, GO:0050654, GO:0009100, GO:0044710, GO:0044260, GO:0071704, GO:0009987, GO:0008150, GO:0008152, GO:0043436, GO:0044238, GO:1901564, GO:0006082, GO:0019538, GO:1901135, GO:0044237, GO:0043170, GO:0006029, GO:0006790, GO:0006022, GO:0044281
GO:0005515 [MF]protein bindingprobableGO:0003674, GO:0005488
GO:0005975 [BP]carbohydrate metabolic processprobableGO:0044238, GO:0008150, GO:0008152, GO:0071704
GO:2000637 [BP]positive regulation of gene silencing by miRNAprobableGO:0050794, GO:0050789, GO:0060966, GO:0060147, GO:0060964, GO:0065007, GO:0048518, GO:0008150, GO:0060968, GO:0060148, GO:0048522
GO:0006954 [BP]inflammatory responseprobableGO:0006952, GO:0050896, GO:0006950, GO:0008150, GO:0009611
GO:0007427 [BP]epithelial cell migration, open tracheal systemprobableGO:0032502, GO:0006928, GO:0051674, GO:0001667, GO:0007275, GO:0044699, GO:0090132, GO:0016477, GO:0060541, GO:0032501, GO:0009987, GO:0008150, GO:0048731, GO:0051179, GO:0090130, GO:0040011, GO:0007424, GO:0010631, GO:0044707, GO:0048870, GO:0048856, GO:0044763
GO:0008045 [BP]motor neuron axon guidanceprobableGO:0032502, GO:0044707, GO:0030030, GO:0030154, GO:0048468, GO:0031175, GO:0007411, GO:0009653, GO:0007275, GO:0044699, GO:0000904, GO:0000902, GO:0042330, GO:0048869, GO:0016043, GO:0032989, GO:0071840, GO:0048666, GO:0048667, GO:0032501, GO:0006935, GO:0030182, GO:0009987, GO:0044767, GO:0008150, GO:0007409, GO:0048731, GO:0042221, GO:0022008, GO:0048858, GO:0040011, GO:0048699, GO:0032990, GO:0009605, GO:0050896, GO:0048856, GO:0007399, GO:0048812, GO:0044763
GO:0030424 [CC]axonprobableGO:0044464, GO:0005623, GO:0005575, GO:0097458, GO:0043005, GO:0042995
GO:0005796 [CC]Golgi lumenprobableGO:0005737, GO:0005794, GO:0043231, GO:0043229, GO:0043233, GO:0044464, GO:0044444, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0044431, GO:0005623, GO:0005575, GO:0044424, GO:0043227, GO:0043226, GO:0044422
GO:0048627 [BP]myoblast developmentprobableGO:0032502, GO:0048856, GO:0048869, GO:0030154, GO:0048468, GO:0044767, GO:0061061, GO:0044763, GO:0045445, GO:0008150, GO:0009987, GO:0042692, GO:0044699
GO:0042060 [BP]wound healingprobableGO:0050896, GO:0006950, GO:0008150, GO:0009611
GO:0009790 [BP]embryo developmentprobableGO:0032502, GO:0032501, GO:0044707, GO:0048856, GO:0044767, GO:0008150, GO:0007275, GO:0044699
GO:0060429 [BP]epithelium developmentprobableGO:0032502, GO:0048856, GO:0008150, GO:0009888
GO:0007155 [BP]cell adhesionprobableGO:0008150, GO:0009987, GO:0022610, GO:0044763, GO:0044699

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 1AFO, chain A
Confidence level:confident
Coverage over the Query: 1-35
View the alignment between query and template
View the model in PyMOL
Template: 1EJP, chain A
Confidence level:confident
Coverage over the Query: 31-64
View the alignment between query and template
View the model in PyMOL