Query psy1893
Match_columns 78
No_of_seqs 104 out of 423
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 18:56:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2802|consensus 99.3 6.6E-13 1.4E-17 104.6 3.8 59 3-62 361-419 (503)
2 COG0053 MMT1 Predicted Co/Zn/C 98.9 5E-09 1.1E-13 78.6 7.6 65 8-76 159-223 (304)
3 PRK09509 fieF ferrous iron eff 98.9 1E-08 2.2E-13 75.6 8.6 67 6-76 155-221 (299)
4 TIGR01297 CDF cation diffusion 98.9 1.1E-08 2.4E-13 73.0 7.6 69 6-75 131-199 (268)
5 PRK03557 zinc transporter ZitB 98.8 2.7E-08 5.9E-13 74.2 7.6 68 5-75 160-227 (312)
6 PF01545 Cation_efflux: Cation 98.2 2.4E-07 5.3E-12 66.3 -1.2 61 16-76 152-213 (284)
7 KOG1485|consensus 97.9 3.9E-05 8.4E-10 60.8 6.0 65 11-76 269-333 (412)
8 COG1230 CzcD Co/Zn/Cd efflux s 97.3 0.0014 3.1E-08 49.9 7.9 59 6-67 163-221 (296)
9 KOG1484|consensus 96.5 0.023 5.1E-07 44.5 8.6 64 4-67 210-273 (354)
10 PF07332 DUF1469: Protein of u 90.2 3.4 7.4E-05 26.4 8.5 40 36-75 73-113 (121)
11 PRK03557 zinc transporter ZitB 88.8 2.1 4.5E-05 32.0 6.5 55 9-63 55-116 (312)
12 TIGR01297 CDF cation diffusion 86.7 3.8 8.3E-05 29.0 6.6 53 11-63 28-87 (268)
13 COG4956 Integral membrane prot 86.4 2.3 5E-05 33.5 5.7 59 4-62 81-139 (356)
14 COG0053 MMT1 Predicted Co/Zn/C 84.9 5.3 0.00011 30.1 6.9 55 8-62 48-109 (304)
15 PRK09509 fieF ferrous iron eff 83.9 5.7 0.00012 29.3 6.6 54 10-63 48-108 (299)
16 PF05105 Phage_holin_4: Holin 82.1 11 0.00024 24.3 8.3 59 17-78 58-116 (118)
17 PLN00014 light-harvesting-like 79.6 2.7 5.8E-05 31.8 3.5 46 10-58 169-216 (250)
18 PF04156 IncA: IncA protein; 78.8 18 0.00039 24.7 7.5 45 9-53 10-60 (191)
19 PF03818 MadM: Malonate/sodium 77.3 13 0.00029 22.5 5.4 40 11-50 18-57 (60)
20 PRK09609 hypothetical protein; 73.5 15 0.00033 28.5 6.2 66 11-77 60-125 (312)
21 PF01545 Cation_efflux: Cation 72.7 23 0.0005 25.1 6.7 55 9-63 35-96 (284)
22 PF03707 MHYT: Bacterial signa 72.6 16 0.00034 21.0 4.9 39 19-57 9-50 (62)
23 PF13386 DsbD_2: Cytochrome C 72.5 22 0.00048 24.6 6.4 46 11-56 47-92 (199)
24 COG1230 CzcD Co/Zn/Cd efflux s 70.3 27 0.0006 26.8 7.0 54 9-62 58-118 (296)
25 cd02435 CCC1 CCC1. CCC1: This 67.1 33 0.00072 25.2 6.6 46 9-54 188-239 (241)
26 PF06738 DUF1212: Protein of u 66.6 21 0.00046 24.3 5.3 45 14-58 107-151 (193)
27 PF11021 DUF2613: Protein of u 63.5 9.8 0.00021 22.6 2.7 22 33-54 6-27 (56)
28 PF06295 DUF1043: Protein of u 62.8 8.5 0.00018 25.6 2.6 23 35-57 2-24 (128)
29 COG4993 Gcd Glucose dehydrogen 62.1 5.2 0.00011 34.3 1.8 50 6-60 6-55 (773)
30 PF01569 PAP2: PAP2 superfamil 56.8 30 0.00065 21.2 4.3 34 24-57 94-128 (129)
31 PRK10440 iron-enterobactin tra 56.7 14 0.00031 28.4 3.2 27 9-35 65-91 (330)
32 PF10762 DUF2583: Protein of u 54.8 27 0.00058 22.7 3.8 44 9-52 12-63 (89)
33 PRK09777 fecD iron-dicitrate t 54.5 17 0.00036 27.9 3.3 27 9-35 57-83 (318)
34 PF07178 TraL: TraL protein; 53.4 54 0.0012 20.5 5.1 33 18-58 26-58 (95)
35 PRK10441 iron-enterobactin tra 53.1 18 0.00039 27.9 3.3 27 9-35 66-92 (335)
36 PRK09535 btuC corrinoid ABC tr 53.0 18 0.00039 28.4 3.3 27 9-35 101-127 (366)
37 COG3300 MHYT domain (predicted 52.8 72 0.0016 24.0 6.3 59 10-73 111-175 (236)
38 PRK10983 putative inner membra 52.1 50 0.0011 25.5 5.6 43 35-77 323-366 (368)
39 PRK13857 type IV secretion sys 51.7 25 0.00054 24.0 3.4 40 16-55 76-115 (120)
40 TIGR00267 conserved hypothetic 51.7 60 0.0013 22.4 5.5 43 9-51 122-165 (169)
41 PF01988 VIT1: VIT family; In 51.4 71 0.0015 22.5 5.9 43 10-52 167-210 (213)
42 PRK11228 fecC iron-dicitrate t 51.2 20 0.00043 27.3 3.2 27 9-35 57-83 (323)
43 PF04956 TrbC: TrbC/VIRB2 fami 50.9 56 0.0012 19.9 5.7 37 17-53 60-96 (99)
44 PF01032 FecCD: FecCD transpor 50.3 22 0.00048 26.8 3.3 27 9-35 48-74 (311)
45 TIGR03869 F420-0_ABCperm propo 50.1 21 0.00046 27.3 3.3 27 9-35 59-85 (325)
46 PRK10692 hypothetical protein; 50.0 39 0.00085 22.0 4.0 45 8-52 11-63 (92)
47 PF10835 DUF2573: Protein of u 49.5 25 0.00054 22.5 3.0 23 52-75 11-33 (82)
48 PF11190 DUF2976: Protein of u 49.4 68 0.0015 20.5 6.3 52 6-57 23-85 (87)
49 TIGR02121 Na_Pro_sym sodium/pr 48.8 1.3E+02 0.0028 23.6 7.8 18 60-77 466-483 (487)
50 PRK11677 hypothetical protein; 48.2 20 0.00043 24.6 2.6 24 33-56 4-27 (134)
51 PF06695 Sm_multidrug_ex: Puta 47.7 40 0.00087 22.1 3.9 31 18-48 90-120 (121)
52 PRK03784 vtamin B12-transporte 46.9 26 0.00055 27.0 3.3 27 9-35 64-90 (331)
53 PF14351 DUF4401: Domain of un 46.7 31 0.00067 25.8 3.6 27 30-56 28-54 (326)
54 PF13829 DUF4191: Domain of un 46.0 1.2E+02 0.0026 22.6 6.5 31 17-47 38-68 (224)
55 PRK04897 heat shock protein Ht 45.9 1E+02 0.0023 22.9 6.4 64 13-76 20-89 (298)
56 PF04246 RseC_MucC: Positive r 45.9 65 0.0014 21.0 4.7 44 15-61 79-122 (135)
57 PF13040 DUF3901: Protein of u 44.3 36 0.00078 18.9 2.8 22 51-75 10-31 (40)
58 PF12301 CD99L2: CD99 antigen 42.1 39 0.00085 23.9 3.4 29 33-61 117-145 (169)
59 PRK01030 tetrahydromethanopter 41.3 65 0.0014 24.7 4.6 43 13-55 75-117 (264)
60 PF06181 DUF989: Protein of un 41.3 80 0.0017 24.6 5.2 59 10-68 153-216 (300)
61 PF12631 GTPase_Cys_C: Catalyt 40.6 71 0.0015 18.9 4.0 31 43-73 38-68 (73)
62 TIGR02840 spore_YtaF putative 39.7 1.4E+02 0.003 21.3 6.1 44 15-58 41-84 (206)
63 cd02434 Nodulin-21_like_3 Nodu 39.6 1.4E+02 0.0031 21.5 6.4 39 13-51 180-219 (225)
64 COG0609 FepD ABC-type Fe3+-sid 38.9 41 0.00088 25.8 3.3 27 9-35 60-86 (334)
65 PRK01265 heat shock protein Ht 37.8 1.9E+02 0.0041 22.3 7.5 38 39-76 48-92 (324)
66 TIGR02762 TraL_TIGR type IV co 37.5 1.1E+02 0.0023 19.4 4.8 25 18-46 26-50 (95)
67 PF11431 Transport_MerF: Membr 37.1 54 0.0012 18.9 2.8 41 15-57 4-44 (46)
68 PF06123 CreD: Inner membrane 36.4 1.5E+02 0.0032 23.9 6.2 49 14-62 360-408 (430)
69 PF00854 PTR2: POT family; In 35.8 36 0.00078 25.1 2.5 59 11-69 4-66 (372)
70 PRK11715 inner membrane protei 35.7 1.7E+02 0.0037 23.6 6.4 49 14-62 366-414 (436)
71 COG3104 PTR2 Dipeptide/tripept 35.7 14 0.00031 30.3 0.4 59 10-71 94-152 (498)
72 COG3559 TnrB3 Putative exporte 34.7 1.5E+02 0.0032 24.8 6.0 50 15-64 409-459 (536)
73 PF13488 Gly-zipper_Omp: Glyci 34.5 88 0.0019 17.5 4.2 31 18-48 7-37 (46)
74 PRK01030 tetrahydromethanopter 33.9 2.2E+02 0.0047 21.9 7.4 55 7-67 9-67 (264)
75 PF06897 DUF1269: Protein of u 33.0 98 0.0021 19.9 3.9 45 19-75 6-50 (102)
76 PF07155 ECF-ribofla_trS: ECF- 32.9 1.5E+02 0.0032 19.6 5.6 43 13-56 53-96 (169)
77 PF10112 Halogen_Hydrol: 5-bro 32.8 1.6E+02 0.0035 20.4 5.3 43 12-56 12-54 (199)
78 PF04650 YSIRK_signal: YSIRK t 32.8 35 0.00076 17.4 1.4 12 35-46 15-26 (27)
79 PF04211 MtrC: Tetrahydrometha 32.2 93 0.002 23.8 4.2 43 13-55 82-124 (262)
80 TIGR03745 conj_TIGR03745 integ 32.0 1.1E+02 0.0024 20.3 4.1 53 6-58 39-102 (104)
81 KOG1485|consensus 31.5 81 0.0017 25.5 4.0 34 29-62 178-211 (412)
82 PRK10577 iron-hydroxamate tran 31.3 59 0.0013 27.2 3.3 27 9-35 403-429 (668)
83 PLN02601 beta-carotene hydroxy 31.0 1.6E+02 0.0034 23.0 5.3 68 7-74 181-251 (303)
84 PF12669 P12: Virus attachment 30.9 55 0.0012 19.1 2.3 13 39-51 2-14 (58)
85 PF15179 Myc_target_1: Myc tar 30.1 62 0.0013 23.8 2.9 18 36-53 26-43 (197)
86 PRK08456 flagellar motor prote 29.9 1.1E+02 0.0025 22.5 4.3 45 10-54 160-204 (257)
87 PF01810 LysE: LysE type trans 29.8 1.5E+02 0.0032 19.8 4.6 45 17-61 41-86 (191)
88 COG4980 GvpP Gas vesicle prote 29.4 95 0.0021 20.9 3.5 22 32-53 4-25 (115)
89 PRK10577 iron-hydroxamate tran 29.0 68 0.0015 26.8 3.3 27 9-35 68-94 (668)
90 COG3763 Uncharacterized protei 28.7 1.3E+02 0.0027 18.8 3.7 24 38-64 13-36 (71)
91 TIGR01148 mtrC N5-methyltetrah 28.4 2.8E+02 0.006 21.3 7.4 56 6-67 15-74 (265)
92 PF04657 DUF606: Protein of un 28.3 1.8E+02 0.004 19.3 6.1 47 10-56 6-55 (138)
93 PRK09543 znuB high-affinity zi 27.9 1.3E+02 0.0027 22.0 4.2 21 31-51 80-100 (261)
94 COG1814 Uncharacterized membra 27.8 2.3E+02 0.0051 20.3 6.4 28 11-38 179-206 (229)
95 TIGR03546 conserved hypothetic 27.7 79 0.0017 22.0 3.0 21 35-55 110-130 (154)
96 PRK10862 SoxR reducing system 27.5 2E+02 0.0044 19.6 5.8 37 16-55 87-123 (154)
97 KOG1483|consensus 27.3 1E+02 0.0022 25.0 3.8 37 30-66 261-297 (404)
98 PRK14013 hypothetical protein; 27.2 2.9E+02 0.0063 21.8 6.3 52 4-58 281-332 (338)
99 cd03386 PAP2_Aur1_like PAP2_li 27.0 2.1E+02 0.0045 19.5 5.4 34 15-48 147-181 (186)
100 cd02432 Nodulin-21_like_1 Nodu 27.0 2.5E+02 0.0053 20.3 6.3 26 39-64 167-192 (218)
101 PRK10019 nickel/cobalt efflux 26.5 2.6E+02 0.0056 21.3 5.8 42 19-60 72-113 (279)
102 PF06570 DUF1129: Protein of u 25.7 2.4E+02 0.0052 19.7 5.9 27 28-54 173-199 (206)
103 PLN02525 phosphatidic acid pho 24.8 2.2E+02 0.0047 22.3 5.2 55 5-62 201-267 (352)
104 PLN02250 lipid phosphate phosp 24.4 3E+02 0.0065 21.2 5.9 36 19-54 208-245 (314)
105 cd08182 HEPD Hydroxyethylphosp 24.4 2.9E+02 0.0062 20.8 5.7 39 10-48 240-281 (367)
106 PF10177 DUF2371: Uncharacteri 24.4 77 0.0017 22.0 2.4 19 9-27 41-59 (141)
107 TIGR00808 malonate_madM malona 24.0 2.7E+02 0.0058 21.2 5.3 41 11-51 19-59 (254)
108 PRK08124 flagellar motor prote 23.8 1.3E+02 0.0028 22.3 3.7 31 8-38 2-36 (263)
109 PF06946 Phage_holin_5: Phage 23.4 2.2E+02 0.0048 18.5 4.9 27 27-53 27-55 (93)
110 PLN02731 Putative lipid phosph 23.0 3.4E+02 0.0074 21.2 6.0 41 17-57 224-266 (333)
111 cd02433 Nodulin-21_like_2 Nodu 22.9 3.1E+02 0.0067 20.0 6.1 24 10-33 186-209 (234)
112 COG3105 Uncharacterized protei 22.8 66 0.0014 22.4 1.8 23 32-54 8-30 (138)
113 PF04156 IncA: IncA protein; 22.8 2.5E+02 0.0054 18.9 5.8 26 38-63 38-63 (191)
114 PLN02715 lipid phosphate phosp 22.7 2.2E+02 0.0049 22.0 4.9 34 20-53 233-268 (327)
115 PF08507 COPI_assoc: COPI asso 22.3 2.4E+02 0.0051 18.5 5.6 35 35-71 85-119 (136)
116 KOG0224|consensus 22.2 85 0.0018 24.6 2.5 23 10-32 201-223 (316)
117 PRK08124 flagellar motor prote 21.9 2.2E+02 0.0048 21.0 4.6 41 11-51 162-202 (263)
118 PF01024 Colicin: Colicin pore 21.6 2E+02 0.0043 20.9 4.2 35 14-52 141-175 (187)
119 PRK10764 potassium-tellurite e 21.3 3.4E+02 0.0073 20.3 5.5 47 18-64 268-314 (324)
120 PF04530 Viral_Beta_CD: Viral 20.9 72 0.0016 21.8 1.7 15 64-78 99-113 (122)
121 PF05237 MoeZ_MoeB: MoeZ/MoeB 20.9 1.2E+02 0.0025 18.3 2.5 25 40-64 25-49 (84)
122 PF03672 UPF0154: Uncharacteri 20.9 2.1E+02 0.0046 17.4 4.5 17 48-64 13-29 (64)
123 PF13548 DUF4126: Domain of un 20.8 3.2E+02 0.0068 19.3 5.7 38 5-55 138-175 (177)
124 PF06582 DUF1136: Repeat of un 20.7 96 0.0021 15.7 1.8 18 60-77 1-18 (28)
125 PF06103 DUF948: Bacterial pro 20.6 1.4E+02 0.0031 18.0 2.9 23 37-59 2-24 (90)
126 PRK03001 M48 family peptidase; 20.5 3.5E+02 0.0076 19.8 6.0 61 11-76 11-76 (283)
127 PF03239 FTR1: Iron permease F 20.5 3.7E+02 0.0081 20.1 6.7 41 30-76 72-112 (306)
128 COG4280 Predicted membrane pro 20.3 1.5E+02 0.0033 22.3 3.4 31 35-65 64-94 (236)
129 PRK10699 phosphatidylglyceroph 20.2 2.1E+02 0.0046 21.2 4.2 35 28-62 204-239 (244)
130 PF02659 DUF204: Domain of unk 20.1 1.9E+02 0.0041 16.5 4.0 28 17-45 36-63 (67)
131 cd03392 PAP2_like_2 PAP2_like_ 20.1 2.8E+02 0.006 18.5 6.6 28 27-54 152-180 (182)
132 PF04211 MtrC: Tetrahydrometha 20.1 4.1E+02 0.0089 20.4 6.3 55 7-67 16-74 (262)
No 1
>KOG2802|consensus
Probab=99.34 E-value=6.6e-13 Score=104.56 Aligned_cols=59 Identities=39% Similarity=0.576 Sum_probs=50.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy1893 3 SRQTEDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVG 62 (78)
Q Consensus 3 ~V~~ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiG 62 (78)
+|++||+||+.|+.||+.+++++.+||||+||+++||+||.||+.|--. +++-++--+|
T Consensus 361 vVl~EDtAAVtGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLGmVe~d-iyDvK~~diG 419 (503)
T KOG2802|consen 361 VVLLEDTAAVTGVIIAAACMGLSSITGNPIYDSLGSIVVGALLGMVEND-IYDVKATDIG 419 (503)
T ss_pred EEEecchHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHh-hhhccceeec
Confidence 6899999999999999999999999999999999999999999998433 4444444444
No 2
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.91 E-value=5e-09 Score=78.59 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHhh
Q psy1893 8 DAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLAQKMLL 76 (78)
Q Consensus 8 D~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~~~~I~~~ 76 (78)
|....+|. ++|+. +.++|+|+.|++++++|++++++.++.++|||.+.|+|+++|||..++|+++
T Consensus 159 D~~ts~~~---lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~ 223 (304)
T COG0053 159 DVLTSLAV---LVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAI 223 (304)
T ss_pred HHHHHHHH---HHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHH
Confidence 44444544 44555 7788999999999999999999999999999999999999999999999875
No 3
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=98.90 E-value=1e-08 Score=75.64 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=55.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHhh
Q psy1893 6 TEDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLAQKMLL 76 (78)
Q Consensus 6 ~ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~~~~I~~~ 76 (78)
..|...-.+++++ +.++ ++|+|++|++++++||+++.+.++.+.|||.+.|+|+++|||..++|++.
T Consensus 155 ~~D~~~s~~vl~~---~~~~-~~g~~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~ 221 (299)
T PRK09509 155 QSDVMMNGAILLA---LGLS-WYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDI 221 (299)
T ss_pred HHHHHHHHHHHHH---HHHH-HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 4566665554443 3333 46999999999999999999999999999999999999999999988864
No 4
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=98.87 E-value=1.1e-08 Score=72.99 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=57.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHh
Q psy1893 6 TEDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLAQKML 75 (78)
Q Consensus 6 ~ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~~~~I~~ 75 (78)
.++....++-+.+++|+.++.++ +|++|+++|++|++++.+.++.+.++|.+.|+|+++|++.++++++
T Consensus 131 ~~~~~D~~~s~~vli~~~~~~~~-~~~~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~ 199 (268)
T TIGR01297 131 LHVLSDALSSVGVLIGALLIYFG-WHWADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKK 199 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHH
Confidence 44455555556666666777666 8999999999999999999999999999999999998888887765
No 5
>PRK03557 zinc transporter ZitB; Provisional
Probab=98.78 E-value=2.7e-08 Score=74.23 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=55.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHh
Q psy1893 5 QTEDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLAQKML 75 (78)
Q Consensus 5 ~~ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~~~~I~~ 75 (78)
..+|....+|++++. .+..+||+|++|++++++|++++.+.++.++|||..-|++++||++..+++++
T Consensus 160 ~~~D~l~s~~vlv~~---~~~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~ 227 (312)
T PRK03557 160 VLGDLLGSVGAIIAA---LIIIWTGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKR 227 (312)
T ss_pred HHHHHHHHHHHHHHH---HHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHH
Confidence 467776666665544 44567999999999999999999999999999999999998887766666654
No 6
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=98.15 E-value=2.4e-07 Score=66.28 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHhh
Q psy1893 16 LVAGSCMGLTLYTGSHI-PDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLAQKMLL 76 (78)
Q Consensus 16 ~iA~~gi~l~~~tG~p~-~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~~~~I~~~ 76 (78)
+.++++..++..++++. +|+++|++|++.+.+.++.++|++.+.|+++++||+..+++++.
T Consensus 152 ~~v~i~~~~~~~~~~~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~ 213 (284)
T PF01545_consen 152 LAVLISLLLAYLGPWFWYADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRI 213 (284)
T ss_dssp STS-SSSTSSSTT-STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHh
Confidence 44455566677777776 99999999999999999999999999999999999988888763
No 7
>KOG1485|consensus
Probab=97.86 E-value=3.9e-05 Score=60.79 Aligned_cols=65 Identities=32% Similarity=0.347 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHhh
Q psy1893 11 AVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLAQKMLL 76 (78)
Q Consensus 11 A~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~~~~I~~~ 76 (78)
-++--.+|+++++++.+.. +++|+++++++.....++...=..+|..-|+|+++|||..+++..+
T Consensus 269 D~lTn~vaLva~~la~~~~-~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~ 333 (412)
T KOG1485|consen 269 DVLTNSVALVAASLAYYYN-YWLDPIGAILVSTYIIYTGGRTGLENIKELVGRSAPPEYLEIITYL 333 (412)
T ss_pred HHHHHHHHHHHHHHHHhhh-hcccchhhhhhheehhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3556678999999988876 9999999999999999999999999999999999999999988653
No 8
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.0014 Score=49.87 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=48.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCH
Q psy1893 6 TEDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPD 67 (78)
Q Consensus 6 ~ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~ 67 (78)
++|..--+|+++|.. +..+||+++.|++.|++|+++...-|+.+.||..+-|+-..|+.
T Consensus 163 l~D~Lgsv~vIia~i---~i~~~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~ 221 (296)
T COG1230 163 LGDALGSVGVIIAAI---VIRFTGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEG 221 (296)
T ss_pred HHHHHHHHHHHHHHH---HHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 466666666666554 55678999999999999999999999999999999999877733
No 9
>KOG1484|consensus
Probab=96.52 E-value=0.023 Score=44.51 Aligned_cols=64 Identities=17% Similarity=0.064 Sum_probs=52.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCH
Q psy1893 4 RQTEDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPD 67 (78)
Q Consensus 4 V~~ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~ 67 (78)
|++-=.|.++|-+--.+...+=+++|+.+.|++.|++|+++.....+=|.|+...-|+=+.||.
T Consensus 210 ifLHVLaDtlgSvGviist~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s~~iLLq~tPp~ 273 (354)
T KOG1484|consen 210 IFLHVLADTLGSVGVIISTLLIKLFGWMIADPICSLLIAILIFLSVLPLLKYSGKILLQRTPPH 273 (354)
T ss_pred hhHHHHHHHhcchHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 4444445555555555667788999999999999999999999999999999999999986544
No 10
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=90.16 E-value=3.4 Score=26.37 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-CCCCCHHHHHHHHh
Q psy1893 36 VGSFLVGGILGCVAYFIVSSNIEALV-GRSIPDDYLAQKML 75 (78)
Q Consensus 36 iaSi~IG~lL~~vA~~L~~en~~lLi-Ges~~~e~~~~I~~ 75 (78)
.+..+++.+...++..+..--++.+= ...++++..+++++
T Consensus 73 ~a~liv~~~~l~la~i~~~~~~~~l~~~~~~~~~t~~~l~~ 113 (121)
T PF07332_consen 73 LAFLIVAGLYLLLALILLLIGRRRLRRAPPPFEETIAELKE 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 77778888888888877777777776 34555566666553
No 11
>PRK03557 zinc transporter ZitB; Provisional
Probab=88.79 E-value=2.1 Score=32.03 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHH-------hCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy1893 9 AAAVLSVLVAGSCMGLTLY-------TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGR 63 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~-------tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGe 63 (78)
..-++..++++.+..+++. +|...+..+++.+.|+++..+++++++|....+...
T Consensus 55 l~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~~l~~~~~~i~~eai~~l~~~ 116 (312)
T PRK03557 55 LTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERFRTP 116 (312)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445666777777777654 566689999999999999999999999999998764
No 12
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=86.71 E-value=3.8 Score=29.03 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHH-------hCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy1893 11 AVLSVLVAGSCMGLTLY-------TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGR 63 (78)
Q Consensus 11 A~~Gl~iA~~gi~l~~~-------tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGe 63 (78)
-++..++.+.+...++. .|...++.+++++.|+++...++.+++|....+...
T Consensus 28 D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si~~l~~~ 87 (268)
T TIGR01297 28 DVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAIERLINP 87 (268)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34445566666666532 567788999999999999999999999999998853
No 13
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=86.43 E-value=2.3 Score=33.51 Aligned_cols=59 Identities=7% Similarity=0.058 Sum_probs=48.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy1893 4 RQTEDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVG 62 (78)
Q Consensus 4 V~~ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiG 62 (78)
+++--...++|+++|.....--...++|++-.+-++++-++|++.++.++-++++-++-
T Consensus 81 ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~ 139 (356)
T COG4956 81 ILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKKRDEFLR 139 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHH
Confidence 34444556778888777776667899999999999999999999999999998887654
No 14
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=84.93 E-value=5.3 Score=30.11 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHHHHH-------HHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy1893 8 DAAAVLSVLVAGSCMGLT-------LYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVG 62 (78)
Q Consensus 8 D~aA~~Gl~iA~~gi~l~-------~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiG 62 (78)
...-++.-++.+.|+-++ |-.|......++|+++|+++.++++.+.+|....++.
T Consensus 48 s~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~sl~~~~~i~~~g~~i~~~a~~~~~~ 109 (304)
T COG0053 48 SLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLASLIVSILIFAAGFEILLEAIKRLIS 109 (304)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455566777777776 5578889999999999999999999999999999997
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=83.88 E-value=5.7 Score=29.29 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHH-------HhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy1893 10 AAVLSVLVAGSCMGLTL-------YTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGR 63 (78)
Q Consensus 10 aA~~Gl~iA~~gi~l~~-------~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGe 63 (78)
.-++..++++.+..++. -+|...+..+++++.|+++...++++++|....++..
T Consensus 48 ~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~esi~~l~~~ 108 (299)
T PRK09509 48 VDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISP 108 (299)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34566667777777765 3566689999999999999999999999999998853
No 16
>PF05105 Phage_holin_4: Holin family ; InterPro: IPR006480 This group of sequences describe one of the many mutually dissimilar families of holins, phage proteins that act together with lytic enzymes in bacterial lysis. This family includes, besides phage holins, the protein TcdE/UtxA involved in toxin secretion in Clostridium difficile and related species []. This entry is represented by the Bacteriophage phi-29, Gp14 (holin). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=82.13 E-value=11 Score=24.30 Aligned_cols=59 Identities=10% Similarity=0.027 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHhhhC
Q psy1893 17 VAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLAQKMLLQS 78 (78)
Q Consensus 17 iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~~~~I~~~~~ 78 (78)
+.+.+..+....+.+ ...+...++......=... +-||.+.+ |-..|+...+.++.+|+
T Consensus 58 ~v~va~~~d~~~~~~-~~~~~~~~~~~~i~~E~~S-I~EN~~~~-G~~iP~~l~~~l~~l~~ 116 (118)
T PF05105_consen 58 LVLVAHPIDIALGEN-GLPFRTLVIIFYILNELIS-ILENLAEM-GVPIPKWLKKFLKQLKD 116 (118)
T ss_pred HHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHHH-HHHHHHHh-CCCchHHHHHHHHHHhc
Confidence 344555566666666 4445544554444444333 45999876 98889999999998874
No 17
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=79.61 E-value=2.7 Score=31.80 Aligned_cols=46 Identities=17% Similarity=0.355 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHH--HHHHHHHHHHHHHHH
Q psy1893 10 AAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGG--ILGCVAYFIVSSNIE 58 (78)
Q Consensus 10 aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~--lL~~vA~~L~~en~~ 58 (78)
+|++|.+. ++..-..||..++|=+++..-++ ++.+++++++|.|..
T Consensus 169 ~AMiGFva---al~~E~~TG~gll~Qlg~f~~k~llfv~v~gvlliRk~eD 216 (250)
T PLN00014 169 AAMVGFFM---AYLVDSLTGVGLVDQMGNFFCKTLLFVTVAGVLLIRKNED 216 (250)
T ss_pred HHHHHHHH---HHHHHHHcCCcHHHHHhhhhhHHHHHHHHHHheeeeehhh
Confidence 57888776 45567889999999999966554 455677778887754
No 18
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.77 E-value=18 Score=24.67 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCc------cchHHHHHHHHHHHHHHHHHHH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSH------IPDAVGSFLVGGILGCVAYFIV 53 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p------~~DgiaSi~IG~lL~~vA~~L~ 53 (78)
.+.++|++++..|+++-.+++.+ ..=+++++++|++|...++...
T Consensus 10 ~~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~ 60 (191)
T PF04156_consen 10 ILIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCL 60 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999998886666643 3333444444555554444433
No 19
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=77.28 E-value=13 Score=22.49 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHH
Q psy1893 11 AVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAY 50 (78)
Q Consensus 11 A~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~ 50 (78)
|++|++.-.....=-.+|...+--+.-.|++|+.|.+++.
T Consensus 18 a~vG~~m~~S~~lS~~LT~GrihGSAIAI~lGLvLAy~GG 57 (60)
T PF03818_consen 18 AVVGIIMWVSYWLSKKLTRGRIHGSAIAIVLGLVLAYIGG 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcc
Confidence 5556655555444447788888888889999999998764
No 20
>PRK09609 hypothetical protein; Provisional
Probab=73.53 E-value=15 Score=28.55 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHhhh
Q psy1893 11 AVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLAQKMLLQ 77 (78)
Q Consensus 11 A~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~~~~I~~~~ 77 (78)
++.|.+--+++..... ..+..+=.+.+.+.|++-+.+++++.+-++....+|.-..+..++|...|
T Consensus 60 ~ivG~lsDLLs~li~p-G~ffPgFTLsa~l~GlI~Glf~~~~fk~~~~~f~~~~~~~~~~~~i~~~~ 125 (312)
T PRK09609 60 FFTGLLSDLISFLFVP-GVYHPYYTLAAMVYGFIPGIVGWFFFKFGKKFFGKESRIKRYDNKIFKQK 125 (312)
T ss_pred HHHHHHHHHHHHHhcC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4444444444443321 12223445667789999999999999999999999988888888776544
No 21
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=72.65 E-value=23 Score=25.14 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHH-------hCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy1893 9 AAAVLSVLVAGSCMGLTLY-------TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGR 63 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~-------tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGe 63 (78)
.+-.+-..+++.+...+.. .|...+..+++...++++...++.++.|+...++-.
T Consensus 35 l~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~~~~~~~~~si~~~~~~ 96 (284)
T PF01545_consen 35 LADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIFLGLFLIVESIQRLISP 96 (284)
T ss_dssp HHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSS
T ss_pred HHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhhhHHHHHHHHhhccccc
Confidence 3445556667777777665 466789999999999999999999999999888754
No 22
>PF03707 MHYT: Bacterial signalling protein N terminal repeat; InterPro: IPR005330 The MHYT (~190-residue) domain is thought to function as a sensor domain in bacterial signalling proteins, and is named after its conserved amino acid motif, methionine, histidine, and tyrosine. The MHYT domain consists of six predicted transmembrane (TM) segments, connected by short arginine-rich cytoplasmic and periplasmic loops rich in charged residues. Three of the TM segments contain the MHYT motif near the outer face of the cytoplasmic membrane. The MHYT domain has been found in several phylogenetically distinct bacteria, either as a separate, single domain, or in combination with other domains, such as a LytTR-type DNA-binding helix-turn-helix (IPR007492 from INTERPRO), or the signalling domains histidine kinase (IPR005467 from INTERPRO), GGDEF (IPR000160 from INTERPRO), EAL (IPR001633 from INTERPRO) or PAS (IPR000014 from INTERPRO). Proteins containing this repeat include CoxC (Q9KX27 from SWISSPROT) and CoxH (Q9KX23 from SWISSPROT) from Pseudomonas carboxydovorans.
Probab=72.63 E-value=16 Score=20.97 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCccchHH---HHHHHHHHHHHHHHHHHHHHH
Q psy1893 19 GSCMGLTLYTGSHIPDAV---GSFLVGGILGCVAYFIVSSNI 57 (78)
Q Consensus 19 ~~gi~l~~~tG~p~~Dgi---aSi~IG~lL~~vA~~L~~en~ 57 (78)
++|+..-+..+...||.. .|+.+++....+++.+....+
T Consensus 9 y~gM~A~~~~~~~~~~~~~~~~S~~iav~~~~~al~~~~~~~ 50 (62)
T PF03707_consen 9 YTGMAAMRFPGPISYDPPLTLLSILIAVLASAVALWILFRAR 50 (62)
T ss_pred HHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666666667778875 889999998888887776543
No 23
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=72.47 E-value=22 Score=24.56 Aligned_cols=46 Identities=15% Similarity=0.036 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 11 AVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSN 56 (78)
Q Consensus 11 A~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en 56 (78)
+++|.+....|-.+......+..-.+.++..|.++...+..+.+.+
T Consensus 47 ~llG~l~g~~G~~l~~~~~~~~l~~~~~~~~~~~~l~~gl~~l~~~ 92 (199)
T PF13386_consen 47 TLLGALAGLLGSGLSLSGWLPGLRRIIGILLGLLGLFLGLRLLGGP 92 (199)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5789999999999987766788888999999999999888887644
No 24
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=70.26 E-value=27 Score=26.75 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHH-------hCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy1893 9 AAAVLSVLVAGSCMGLTLY-------TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVG 62 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~-------tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiG 62 (78)
+.-.+++.+|+.++.++.. +|+..+.-+++.+=|++|..++.++++|...-+.-
T Consensus 58 l~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~ 118 (296)
T COG1230 58 LSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLA 118 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456678899999998864 56668899999999999999999999999998885
No 25
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=67.07 E-value=33 Score=25.23 Aligned_cols=46 Identities=26% Similarity=0.192 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcc------chHHHHHHHHHHHHHHHHHHHH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHI------PDAVGSFLVGGILGCVAYFIVS 54 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~------~DgiaSi~IG~lL~~vA~~L~~ 54 (78)
+.++.++.++++|.+.+.++|.+. +=++=-+++|++-..+++.+.+
T Consensus 188 si~l~~~aL~ilG~~~s~~s~~~~~~~~~~~s~lrml~~G~~aa~vty~l~~ 239 (241)
T cd02435 188 SVIVTLVALFVFGYVKTWFTGGWGGAGGGVWGAVQMLVVGGLAAGAAWGLVK 239 (241)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777777777777775544 3566666666666666665543
No 26
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=66.60 E-value=21 Score=24.29 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 14 SVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIE 58 (78)
Q Consensus 14 Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~ 58 (78)
-+..++.+...+.++|-.++|.+.+.++|++...+..++.|....
T Consensus 107 ~l~~~l~~~~fa~lfgg~~~~~~~a~i~g~~~~~~~~~~~r~~~~ 151 (193)
T PF06738_consen 107 ILAAGLASAAFALLFGGSWIDMIVAFILGLLVGLLRQLLSRRRLN 151 (193)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 344566667778888999999999999999998888887766544
No 27
>PF11021 DUF2613: Protein of unknown function (DUF2613); InterPro: IPR022566 This is a family of putative small secreted proteins expressed by Actinobacteria. The function is not known.
Probab=63.47 E-value=9.8 Score=22.65 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q psy1893 33 PDAVGSFLVGGILGCVAYFIVS 54 (78)
Q Consensus 33 ~DgiaSi~IG~lL~~vA~~L~~ 54 (78)
.=+++|.++|+.|+..+.+.+-
T Consensus 6 ~pa~aSaV~Gi~lG~~av~gvt 27 (56)
T PF11021_consen 6 GPAAASAVVGIVLGVAAVFGVT 27 (56)
T ss_pred hHHHHHHHHHHHHHHHHHhhhh
Confidence 3478999999999999988653
No 28
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=62.84 E-value=8.5 Score=25.64 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 35 AVGSFLVGGILGCVAYFIVSSNI 57 (78)
Q Consensus 35 giaSi~IG~lL~~vA~~L~~en~ 57 (78)
++.+.+||+++++++.++...|.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~ 24 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQ 24 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccch
Confidence 46788999999999988887774
No 29
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=62.05 E-value=5.2 Score=34.31 Aligned_cols=50 Identities=20% Similarity=0.170 Sum_probs=39.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1893 6 TEDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEAL 60 (78)
Q Consensus 6 ~ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lL 60 (78)
.-=..++.|+.++..|+.|..+-|.++| ++-|+-+...|+.|.|+++..|
T Consensus 6 ~~~~~~~~gl~l~~gg~~l~~lggs~yy-----~iagl~~l~~~~ll~~~k~aal 55 (773)
T COG4993 6 TALVIALCGLALLIGGIWLVALGGSWYY-----LIAGLVLLLSAWLLLRRKRAAL 55 (773)
T ss_pred HHHHHHHHHHHHhccceeEEeeCCchHH-----HHHHHHHHHHHHHHhccchhHH
Confidence 3345677888888888888888898888 6778889999999998887644
No 30
>PF01569 PAP2: PAP2 superfamily This family includes the following Prosite family; InterPro: IPR000326 This entry represents type 2 phosphatidic acid phosphatase (PAP2; 3.1.3.4 from EC) enzymes, such as phosphatidylglycerophosphatase B 3.1.3.27 from EC from Escherichia coli. PAP2 enzymes have a core structure consisting of a 5-helical bundle, where the beginning of the third helix binds the cofactor []. PAP2 enzymes catalyse the dephosphorylation of phosphatidate, yielding diacylglycerol and inorganic phosphate []. In eukaryotic cells, PAP activity has a central role in the synthesis of phospholipids and triacylglycerol through its product diacylglycerol, and it also generates and/or degrades lipid-signalling molecules that are related to phosphatidate. Other related enzymes have a similar core structure, including haloperoxidases such as bromoperoxidase (contains one core bundle, but forms a dimer), chloroperoxidases (contains two core bundles arranged as in other family dimers), bacitracin transport permease from Bacillus licheniformis, glucose-6-phosphatase from rat. The vanadium-dependent haloperoxidases exclusively catalyse the oxidation of halides, and act as histidine phosphatases, using histidine for the nucleophilic attack in the first step of the reaction []. Amino acid residues involved in binding phosphate/vanadate are conserved between the two families, supporting a proposal that vanadium passes through a tetrahedral intermediate during the reaction mechanism.; GO: 0003824 catalytic activity, 0016020 membrane; PDB: 1QI9_B 1IW8_A 1EOI_A 1D2T_A 1QHB_D 1UP8_C 2IPB_A 1VNS_A 1VNF_A 1VNE_A ....
Probab=56.78 E-value=30 Score=21.19 Aligned_cols=34 Identities=21% Similarity=0.477 Sum_probs=24.6
Q ss_pred HHHHhCCc-cchHHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 24 LTLYTGSH-IPDAVGSFLVGGILGCVAYFIVSSNI 57 (78)
Q Consensus 24 l~~~tG~p-~~DgiaSi~IG~lL~~vA~~L~~en~ 57 (78)
-..+.|.+ .-|.++|+++|.....+....-++++
T Consensus 94 srv~~g~H~~~Dvi~G~~lg~~~~~~~~~~~~~~~ 128 (129)
T PF01569_consen 94 SRVYLGAHFFSDVIAGILLGILIAYLFYRVYKKRR 128 (129)
T ss_dssp HHHHTTSS-HHHHHHHHHHHHHHHHHHCCHCHHH-
T ss_pred CEEEcCeEehHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 34444544 56999999999999988877766654
No 31
>PRK10440 iron-enterobactin transporter permease; Provisional
Probab=56.69 E-value=14 Score=28.42 Aligned_cols=27 Identities=7% Similarity=-0.016 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccchH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIPDA 35 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~Dg 35 (78)
.|.+.|..+|..|..+=..|.||..|+
T Consensus 65 ~a~l~G~~LalsG~llQ~l~rNpLa~P 91 (330)
T PRK10440 65 MALLIGAALGVSGAIFQSLMRNPLGSP 91 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 467899999999999999999999985
No 32
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=54.77 E-value=27 Score=22.69 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccch--------HHHHHHHHHHHHHHHHHH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIPD--------AVGSFLVGGILGCVAYFI 52 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~D--------giaSi~IG~lL~~vA~~L 52 (78)
.---+|++.-..|++.+-....|-+| ++-||+||.++=.++.++
T Consensus 12 ~lMglGmv~Mv~gigysi~~~~~~L~Lp~~~~~gal~~IFiGAllWL~GARi 63 (89)
T PF10762_consen 12 VLMGLGMVVMVGGIGYSILSQIPQLGLPQFLAHGALFSIFIGALLWLVGARI 63 (89)
T ss_pred HHHHHhHHHHHHhHHHHHHHhcccCCCcHHHHhhHHHHHHHHHHHHHhcccc
Confidence 33456777777777766666555544 577888888887666554
No 33
>PRK09777 fecD iron-dicitrate transporter subunit FecD; Reviewed
Probab=54.54 E-value=17 Score=27.86 Aligned_cols=27 Identities=11% Similarity=-0.011 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccchH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIPDA 35 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~Dg 35 (78)
.+.+.|..+|..|..+=..|.||..|+
T Consensus 57 ~a~l~G~~LavsG~~lQ~l~rNpLA~P 83 (318)
T PRK09777 57 LALFVGAALAVSGVLVQGIVRNPLASP 83 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 467899999999999999999999995
No 34
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=53.41 E-value=54 Score=20.54 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 18 AGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIE 58 (78)
Q Consensus 18 A~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~ 58 (78)
+++++..+..+|+ .++|++++.+.....+.-|+
T Consensus 26 ~~~~~~~gi~~~~--------~~~g~i~g~~~~~~~~k~K~ 58 (95)
T PF07178_consen 26 ALILFVIGILSGH--------FLIGLILGIVLWWGYRKFKK 58 (95)
T ss_pred HHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHc
Confidence 4444444555554 66788888877777776554
No 35
>PRK10441 iron-enterobactin transporter membrane protein; Provisional
Probab=53.14 E-value=18 Score=27.85 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccchH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIPDA 35 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~Dg 35 (78)
.+.+.|..+|..|..+=..|.||..|+
T Consensus 66 ~ailvG~~LavaG~llQ~l~rNpLA~P 92 (335)
T PRK10441 66 AGLLAGGALGLAGALMQTLTRNPLADP 92 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 467889999999999999999999985
No 36
>PRK09535 btuC corrinoid ABC transporter permease; Reviewed
Probab=52.97 E-value=18 Score=28.43 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccchH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIPDA 35 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~Dg 35 (78)
.|.+.|..+|..|..+=..|.||..|+
T Consensus 101 ~a~lvGa~LalsG~~lQ~l~rNPLAdP 127 (366)
T PRK09535 101 LAATVGFALAAAGTVMQGFFRNPMADP 127 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 477899999999999999999999995
No 37
>COG3300 MHYT domain (predicted integral membrane sensor domain) [Signal transduction mechanisms]
Probab=52.83 E-value=72 Score=24.02 Aligned_cols=59 Identities=17% Similarity=0.090 Sum_probs=39.2
Q ss_pred HHHHHHHHHH---HHHHHHHHhCCccchH---HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHH
Q psy1893 10 AAVLSVLVAG---SCMGLTLYTGSHIPDA---VGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLAQK 73 (78)
Q Consensus 10 aA~~Gl~iA~---~gi~l~~~tG~p~~Dg---iaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~~~~I 73 (78)
+.++|+-||. +|+..=+.-|+-+||. ..|++||.....+|+.++.+-| +|.+...++..
T Consensus 111 g~llGlgIAaMHYtGMaA~~~~g~I~y~~~~v~~Svliav~as~~AL~~~~rlr-----~s~~~~~~~~~ 175 (236)
T COG3300 111 GLLLGLGIAAMHYTGMAAMEVQGTIVYDPALVALSVLIAVAASFVALWLFFRLR-----GSRRSRLRRAV 175 (236)
T ss_pred HHHHhhhHHHHHHhhHHHHHHcceeeechHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchhHHHHHH
Confidence 3444544442 3444444455667776 4899999999999999999822 56666666543
No 38
>PRK10983 putative inner membrane protein; Provisional
Probab=52.12 E-value=50 Score=25.46 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCH-HHHHHHHhhh
Q psy1893 35 AVGSFLVGGILGCVAYFIVSSNIEALVGRSIPD-DYLAQKMLLQ 77 (78)
Q Consensus 35 giaSi~IG~lL~~vA~~L~~en~~lLiGes~~~-e~~~~I~~~~ 77 (78)
|+.++++|-.+..+...+.++-++.=-..+++| |..|+.++++
T Consensus 323 G~~G~~lgp~i~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (368)
T PRK10983 323 GMIGLFIGPVVLAVSYRLFSAWVHEVPPPTDQPEEILEELEEIE 366 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHhcc
Confidence 566777777777777777777654211333333 5667777765
No 39
>PRK13857 type IV secretion system pilin subunit VirB2; Provisional
Probab=51.75 E-value=25 Score=24.01 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH
Q psy1893 16 LVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSS 55 (78)
Q Consensus 16 ~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~e 55 (78)
++|.++++++.++|.-=|--.++.++|+.+++-|-.+...
T Consensus 76 ~LAVI~vG~swmfGrldl~~a~~Vv~GI~iVFGA~~iV~t 115 (120)
T PRK13857 76 VLGIVAIGISWMFGRASLGLVAGVVGGIVIMFGASFLGQT 115 (120)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhheeccHHHHHH
Confidence 5677888889999999898999999999888877766543
No 40
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=51.66 E-value=60 Score=22.45 Aligned_cols=43 Identities=9% Similarity=0.110 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccc-hHHHHHHHHHHHHHHHHH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIP-DAVGSFLVGGILGCVAYF 51 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~-DgiaSi~IG~lL~~vA~~ 51 (78)
+.++..+.++..|...+.+.|.+++ -++=-+++|.+-+.+++.
T Consensus 122 s~~~~~~~L~ilG~~~a~~s~~~~~~s~lr~~~~G~~aa~it~~ 165 (169)
T TIGR00267 122 TVLLTLIALLVLGVYLGRISRENILISSLKMVVIGLLVAVVSLL 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777778888776666 555556666666655543
No 41
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=51.36 E-value=71 Score=22.55 Aligned_cols=43 Identities=21% Similarity=0.076 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccchHHH-HHHHHHHHHHHHHHH
Q psy1893 10 AAVLSVLVAGSCMGLTLYTGSHIPDAVG-SFLVGGILGCVAYFI 52 (78)
Q Consensus 10 aA~~Gl~iA~~gi~l~~~tG~p~~Dgia-Si~IG~lL~~vA~~L 52 (78)
.++..+.++..|.+.+..++.|++-... .+++|++-..+++.+
T Consensus 167 ~~~~~~~L~~~G~~~a~~~~~~~~~~~l~~~~~G~~aa~~~~~i 210 (213)
T PF01988_consen 167 IAVTILALFILGYFKARISGQSWWRSGLEMLLIGLIAAAVTYLI 210 (213)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777775554443 344444444444443
No 42
>PRK11228 fecC iron-dicitrate transporter permease subunit; Provisional
Probab=51.24 E-value=20 Score=27.29 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccchH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIPDA 35 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~Dg 35 (78)
.|.+.|..+|..|..+=..|.||..|+
T Consensus 57 ~a~l~G~~La~sG~~lQ~l~rNpLa~P 83 (323)
T PRK11228 57 VAVLIGASLALAGALLQTLTHNPLASP 83 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 367889999999999999999999985
No 43
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=50.86 E-value=56 Score=19.95 Aligned_cols=37 Identities=22% Similarity=0.101 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHH
Q psy1893 17 VAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIV 53 (78)
Q Consensus 17 iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~ 53 (78)
+++...++...+|..-+.-+..+++|..+...|-.+.
T Consensus 60 i~ii~~g~~~~~g~~~~~~~~~~v~G~~iv~~A~~iv 96 (99)
T PF04956_consen 60 IAIIVAGIMMMFGRQSWRWFIGVVIGIIIVFGAPSIV 96 (99)
T ss_pred HHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677788877999999999999998887664
No 44
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=50.31 E-value=22 Score=26.79 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccchH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIPDA 35 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~Dg 35 (78)
.+.+.|..+|..|..+=..|.||..|+
T Consensus 48 ~a~l~G~~La~sG~~lQ~~~rNpLA~P 74 (311)
T PF01032_consen 48 AAILVGAALALSGALLQTLTRNPLADP 74 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TT--T
T ss_pred HHHHhHHHHHHHHHHHHHHhCCCcccc
Confidence 367889999999999999999999995
No 45
>TIGR03869 F420-0_ABCperm proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=50.11 E-value=21 Score=27.35 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccchH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIPDA 35 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~Dg 35 (78)
.+.+.|..+|..|..+=..|.||..|+
T Consensus 59 ~a~lvG~~La~sG~i~Q~l~rNpLa~P 85 (325)
T TIGR03869 59 TAAAVGAGLAIAGAVMQSLTRNPLADP 85 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 367889999999999999999999985
No 46
>PRK10692 hypothetical protein; Provisional
Probab=50.05 E-value=39 Score=22.04 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCccch--------HHHHHHHHHHHHHHHHHH
Q psy1893 8 DAAAVLSVLVAGSCMGLTLYTGSHIPD--------AVGSFLVGGILGCVAYFI 52 (78)
Q Consensus 8 D~aA~~Gl~iA~~gi~l~~~tG~p~~D--------giaSi~IG~lL~~vA~~L 52 (78)
..---+|+++-..|++.+-....|-+| ++-||.||.++-.++.++
T Consensus 11 N~lMglGmv~Mv~gigysi~~~i~~L~Lp~~~~~gal~~IFiGAllWL~GAri 63 (92)
T PRK10692 11 NVLMGLGLVVMVVGVGYSILNQLPQLNLPQFFAHGALLSIFVGALLWLAGARV 63 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHhhHHHHHHHHHHHHHhcccc
Confidence 334456777777777766655555444 566888888876665544
No 47
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=49.50 E-value=25 Score=22.53 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=17.2
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHh
Q psy1893 52 IVSSNIEALVGRSIPDDYLAQKML 75 (78)
Q Consensus 52 L~~en~~lLiGes~~~e~~~~I~~ 75 (78)
|...-..+|+||+ +||..++++.
T Consensus 11 LveKytELL~Ge~-~~e~~EkVk~ 33 (82)
T PF10835_consen 11 LVEKYTELLLGET-SPEMKEKVKQ 33 (82)
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHH
Confidence 4566788999986 7887777653
No 48
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=49.37 E-value=68 Score=20.50 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=36.1
Q ss_pred hhhhHHHHHHHHHHHHHHH---HH-------HhCC-ccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 6 TEDAAAVLSVLVAGSCMGL---TL-------YTGS-HIPDAVGSFLVGGILGCVAYFIVSSNI 57 (78)
Q Consensus 6 ~ED~aA~~Gl~iA~~gi~l---~~-------~tG~-p~~DgiaSi~IG~lL~~vA~~L~~en~ 57 (78)
.-|...+.|++++..+..- +. ..|. ..-|-....++|+.|..+.++|..+..
T Consensus 23 ~~d~~~l~gLv~~a~afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwLl~~A~ 85 (87)
T PF11190_consen 23 AKDGVLLLGLVLAAAAFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWLLTKAA 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHHHHHHc
Confidence 4577888888776655432 11 1233 355777788999999999999987754
No 49
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=48.78 E-value=1.3e+02 Score=23.61 Aligned_cols=18 Identities=6% Similarity=-0.069 Sum_probs=11.1
Q ss_pred hhCCCCCHHHHHHHHhhh
Q psy1893 60 LVGRSIPDDYLAQKMLLQ 77 (78)
Q Consensus 60 LiGes~~~e~~~~I~~~~ 77 (78)
++.+.+|+|+++..++.|
T Consensus 466 ~~t~~~~~~~~~~~~~~~ 483 (487)
T TIGR02121 466 KLTKAPPAAVQTVFEKAK 483 (487)
T ss_pred hccCCCCHHHHHHHHHHH
Confidence 335667777777665543
No 50
>PRK11677 hypothetical protein; Provisional
Probab=48.23 E-value=20 Score=24.56 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 33 PDAVGSFLVGGILGCVAYFIVSSN 56 (78)
Q Consensus 33 ~DgiaSi~IG~lL~~vA~~L~~en 56 (78)
.=++++++||++++++..++...|
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccch
Confidence 345678888888888888775544
No 51
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=47.67 E-value=40 Score=22.14 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHH
Q psy1893 18 AGSCMGLTLYTGSHIPDAVGSFLVGGILGCV 48 (78)
Q Consensus 18 A~~gi~l~~~tG~p~~DgiaSi~IG~lL~~v 48 (78)
+-+|-.++...|.+..+++.++.+|.++..+
T Consensus 90 ~wtgal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 90 AWTGALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 4577888999999999999999999988653
No 52
>PRK03784 vtamin B12-transporter permease; Provisional
Probab=46.94 E-value=26 Score=27.03 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccchH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIPDA 35 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~Dg 35 (78)
.+.+.|..++..|..+=..|.||..|+
T Consensus 64 ~a~l~G~~La~sG~llQ~l~rNpLA~P 90 (331)
T PRK03784 64 AVLLVGAALAVSGAVMQALFENPLAEP 90 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 467889999999999999999999985
No 53
>PF14351 DUF4401: Domain of unknown function (DUF4401)
Probab=46.66 E-value=31 Score=25.77 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=20.2
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 30 SHIPDAVGSFLVGGILGCVAYFIVSSN 56 (78)
Q Consensus 30 ~p~~DgiaSi~IG~lL~~vA~~L~~en 56 (78)
+...|..+++++|+++...|..+-|.+
T Consensus 28 ~~~~~~~~~li~Gl~l~~~A~~l~R~~ 54 (326)
T PF14351_consen 28 FLLSESGAALIVGLLLIAIAVGLLRKD 54 (326)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHccC
Confidence 333343888999999999999888654
No 54
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=45.98 E-value=1.2e+02 Score=22.57 Aligned_cols=31 Identities=16% Similarity=0.031 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHHH
Q psy1893 17 VAGSCMGLTLYTGSHIPDAVGSFLVGGILGC 47 (78)
Q Consensus 17 iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~ 47 (78)
...+++.++-++|+++|=.+-++..|++...
T Consensus 38 ~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am 68 (224)
T PF13829_consen 38 PIAVFVLIGLLFGSWWYWLIIGILLGLLAAM 68 (224)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 3355777788889777766666666555443
No 55
>PRK04897 heat shock protein HtpX; Provisional
Probab=45.94 E-value=1e+02 Score=22.95 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHH-hCCccchHHHHHHHHHHHHHHHHHHHH-----HHHHhhhCCCCCHHHHHHHHhh
Q psy1893 13 LSVLVAGSCMGLTLY-TGSHIPDAVGSFLVGGILGCVAYFIVS-----SNIEALVGRSIPDDYLAQKMLL 76 (78)
Q Consensus 13 ~Gl~iA~~gi~l~~~-tG~p~~DgiaSi~IG~lL~~vA~~L~~-----en~~lLiGes~~~e~~~~I~~~ 76 (78)
..++++++|..++.. +++.....+-++++|+.....+++... -|+.--+.+.-+|+.++.++++
T Consensus 20 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~p~L~~~v~~l 89 (298)
T PRK04897 20 FFLLLALVGAAVGYLFLNSGLGGLIIALIIGVIYALIMIFQSTNVVMSMNHAREVTEEEAPELWHIVEDM 89 (298)
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCEECChhhhHHHHHHHHHH
Confidence 344455555444432 222233334445555555555544332 2333334444456777777765
No 56
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=45.87 E-value=65 Score=20.99 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1893 15 VLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALV 61 (78)
Q Consensus 15 l~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLi 61 (78)
++..++|.++++..+.+ -..+++.|+.-...++.+.|-..+..-
T Consensus 79 ll~li~g~~l~~~~~~~---e~~~~l~~l~~l~~~~~~~~~~~~~~~ 122 (135)
T PF04246_consen 79 LLALIAGAVLGSYLGGS---ELWAILGGLLGLALGFLILRLFDRRLK 122 (135)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34445555555555555 445566666666666666666555443
No 57
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=44.34 E-value=36 Score=18.92 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHh
Q psy1893 51 FIVSSNIEALVGRSIPDDYLAQKML 75 (78)
Q Consensus 51 ~L~~en~~lLiGes~~~e~~~~I~~ 75 (78)
.|+.||+.-|+- |++..++|.+
T Consensus 10 eLV~eNK~ell~---d~~~me~Iee 31 (40)
T PF13040_consen 10 ELVRENKQELLN---DKEAMEKIEE 31 (40)
T ss_pred HHHHHHHHHHHc---CHHHHHHHHH
Confidence 478999999997 7777777753
No 58
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=42.12 E-value=39 Score=23.95 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1893 33 PDAVGSFLVGGILGCVAYFIVSSNIEALV 61 (78)
Q Consensus 33 ~DgiaSi~IG~lL~~vA~~L~~en~~lLi 61 (78)
.=+|.|.+.-.+++.++-++++++|++=-
T Consensus 117 IaGIvsav~valvGAvsSyiaYqkKKlCF 145 (169)
T PF12301_consen 117 IAGIVSAVVVALVGAVSSYIAYQKKKLCF 145 (169)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccce
Confidence 34678888888999999999999999877
No 59
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=41.31 E-value=65 Score=24.65 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH
Q psy1893 13 LSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSS 55 (78)
Q Consensus 13 ~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~e 55 (78)
.|.+=++.|+.++..++..+.-++.++++..+++++-.+++++
T Consensus 75 mG~iaal~G~~i~~~~~~~~~~PI~~liia~iiG~vvG~lan~ 117 (264)
T PRK01030 75 MGTIAALAGVAIGDALGIVLAGPIVALIIAAIIGAVVGKLANN 117 (264)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4777788888888888888888999999999999988888763
No 60
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=41.27 E-value=80 Score=24.58 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-----CCCCCHH
Q psy1893 10 AAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALV-----GRSIPDD 68 (78)
Q Consensus 10 aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLi-----Ges~~~e 68 (78)
++++.+++...+-+.+|.+...---=--+..+|.++...-++++.-|.+-.+ ||.+||+
T Consensus 153 ~~~~~v~~~~~a~~~~q~FSgRaa~i~vGa~lgTiM~~NV~fvI~P~Qkkvv~~~~ag~~~dp~ 216 (300)
T PF06181_consen 153 GVVLFVLLVVAAWGLTQVFSGRAAFIHVGAWLGTIMAANVFFVIWPNQKKVVAAVKAGEEPDPA 216 (300)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhHheeecCCcHHHHhhhhcCCCCCch
Confidence 4556666677777777766554443444566777888888888888877766 5666665
No 61
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=40.63 E-value=71 Score=18.91 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCHHHHHHH
Q psy1893 43 GILGCVAYFIVSSNIEALVGRSIPDDYLAQK 73 (78)
Q Consensus 43 ~lL~~vA~~L~~en~~lLiGes~~~e~~~~I 73 (78)
.=+...-+.-+.+..+-++|+..++++.++|
T Consensus 38 ~dl~a~~L~~A~~~L~~ItG~~~~ediLd~I 68 (73)
T PF12631_consen 38 LDLVAEDLREALESLGEITGEVVTEDILDNI 68 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHCTSS--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 4456677888999999999999999999876
No 62
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=39.65 E-value=1.4e+02 Score=21.25 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 15 VLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIE 58 (78)
Q Consensus 15 l~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~ 58 (78)
.+....|+.+++..+..+...++..+=+++|..++.+..+|+.+
T Consensus 41 ~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~ 84 (206)
T TIGR02840 41 GLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFR 84 (206)
T ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667788888888876666677788899999999999998854
No 63
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=39.62 E-value=1.4e+02 Score=21.48 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhCCccc-hHHHHHHHHHHHHHHHHH
Q psy1893 13 LSVLVAGSCMGLTLYTGSHIP-DAVGSFLVGGILGCVAYF 51 (78)
Q Consensus 13 ~Gl~iA~~gi~l~~~tG~p~~-DgiaSi~IG~lL~~vA~~ 51 (78)
.++.++++|...+..++.+.+ -++=.+++|.+-+.+++.
T Consensus 180 ~~~~L~~~G~~~~~~~~~~~~~~~l~~~~~G~~aa~~ty~ 219 (225)
T cd02434 180 VAFTLFLLGSFKSKLYNGKWIISGIIMLINGAASGGVSFF 219 (225)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666665 333444444444444443
No 64
>COG0609 FepD ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]
Probab=38.92 E-value=41 Score=25.84 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccchH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIPDA 35 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~Dg 35 (78)
.|.+.|..+|..|..+-..|.||..|+
T Consensus 60 ~a~l~Ga~LavsG~~lQ~v~rNpLAdP 86 (334)
T COG0609 60 LAILVGAALAVAGALLQGVTRNPLADP 86 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 477899999999999999999999996
No 65
>PRK01265 heat shock protein HtpX; Provisional
Probab=37.85 E-value=1.9e+02 Score=22.31 Aligned_cols=38 Identities=8% Similarity=-0.067 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhC-----CCC--CHHHHHHHHhh
Q psy1893 39 FLVGGILGCVAYFIVSSNIEALVG-----RSI--PDDYLAQKMLL 76 (78)
Q Consensus 39 i~IG~lL~~vA~~L~~en~~lLiG-----es~--~~e~~~~I~~~ 76 (78)
+++++.+....+++.-.-...+.| +.. +|+.++.++++
T Consensus 48 ~~~~~~~~~~~~~~sp~li~~~~~a~~~~p~~~~~~~L~~~v~~l 92 (324)
T PRK01265 48 LIFVFFLNIIQWLFGPYMINAAYRTVEVTPTDPVYGWLYSIVAEV 92 (324)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHcCCeeCCCCCcccHHHHHHHHHH
Confidence 444555566666666555555555 111 35677777765
No 66
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=37.52 E-value=1.1e+02 Score=19.37 Aligned_cols=25 Identities=12% Similarity=0.414 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHH
Q psy1893 18 AGSCMGLTLYTGSHIPDAVGSFLVGGILG 46 (78)
Q Consensus 18 A~~gi~l~~~tG~p~~DgiaSi~IG~lL~ 46 (78)
++++..++..+|.++ .++++|..+.
T Consensus 26 ~~~~~~~Gi~~~~~l----~g~~lg~~~~ 50 (95)
T TIGR02762 26 GATLFGIGILSGKAL----IGLILGAAVM 50 (95)
T ss_pred HHHHHHHHHHHhhHH----HHHHHHHHHH
Confidence 334444444445442 5566666554
No 67
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=37.08 E-value=54 Score=18.88 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 15 VLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNI 57 (78)
Q Consensus 15 l~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~ 57 (78)
+++-+.+++++..+| +.|-+-==...+.++.+.+.+.|+.+
T Consensus 4 LviL~g~vGLsa~vg--yLDyvL~PaLa~fi~lt~yal~r~~~ 44 (46)
T PF11431_consen 4 LVILFGAVGLSALVG--YLDYVLLPALAVFIGLTIYALWRRRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHS--HTTTSTTTTHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677788899998 45543222223333344444555443
No 68
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=36.41 E-value=1.5e+02 Score=23.91 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy1893 14 SVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVG 62 (78)
Q Consensus 14 Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiG 62 (78)
...+.+++.++++.+++...=..-+.....+=++.=..|-.|+..+|+|
T Consensus 360 ~a~i~Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lLq~EdyALL~G 408 (430)
T PF06123_consen 360 LACIGLISLYLSSVLKSWKRGLIFAGLLAALYGFLYVLLQSEDYALLMG 408 (430)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3456678888888999888877777777777777777788899999998
No 69
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=35.78 E-value=36 Score=25.11 Aligned_cols=59 Identities=19% Similarity=0.074 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHH
Q psy1893 11 AVLSVLVAGSCMGLTLYTGSH----IPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDY 69 (78)
Q Consensus 11 A~~Gl~iA~~gi~l~~~tG~p----~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~ 69 (78)
-++|.++-.+|..+-..+-.| --.+.....+|+.+..++.-..|-|.+-+.|+--+++.
T Consensus 4 I~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~ 66 (372)
T PF00854_consen 4 ILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD 66 (372)
T ss_dssp HHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred hhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence 467778888888772222222 23466789999999999999999999999999888764
No 70
>PRK11715 inner membrane protein; Provisional
Probab=35.72 E-value=1.7e+02 Score=23.61 Aligned_cols=49 Identities=14% Similarity=0.048 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy1893 14 SVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVG 62 (78)
Q Consensus 14 Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiG 62 (78)
...+.+++.++++.+++...=..-+.....+=++.=..|-.|...+|+|
T Consensus 366 ~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly~lLq~EDyALL~G 414 (436)
T PRK11715 366 LACVLLIGFYLSAVLRSWKRGLLFAAALAALYGVLYGLLQSEDYALLLG 414 (436)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3456678889999999998888877777777777777888899999998
No 71
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=35.66 E-value=14 Score=30.35 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy1893 10 AAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLA 71 (78)
Q Consensus 10 aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~~~ 71 (78)
+-+.|-++-.+|..+-...+ ..+..++.+|+.+..++.=++|.|.+-++||=-||+.-+
T Consensus 94 tI~lGail~~iGh~~L~~~~---~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr 152 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISS---VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR 152 (498)
T ss_pred HHHHHHHHHHHHHHHHhccc---cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence 44566666667766655544 456789999999999999999999999999987776544
No 72
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=34.74 E-value=1.5e+02 Score=24.79 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHH-hCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy1893 15 VLVAGSCMGLTLY-TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRS 64 (78)
Q Consensus 15 l~iA~~gi~l~~~-tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes 64 (78)
.++|+.|.++++. +++...|+...++=..+.-.+|.+...--..++.|-.
T Consensus 409 tllAl~ga~L~~~~~~~~v~~s~~~~v~sgl~~lvav~f~l~ia~ll~GLa 459 (536)
T COG3559 409 TLLALVGAGLAYGMTVGDVGGSLPTVVGSGLVQLVAVWFLLAIAVLLFGLA 459 (536)
T ss_pred HHHHHHHHHHHhhccCcccCccHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 4678999999998 9999999999999999999999999999999999954
No 73
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=34.52 E-value=88 Score=17.50 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHH
Q psy1893 18 AGSCMGLTLYTGSHIPDAVGSFLVGGILGCV 48 (78)
Q Consensus 18 A~~gi~l~~~tG~p~~DgiaSi~IG~lL~~v 48 (78)
|..|..+...+++|....+.+-.+|..++..
T Consensus 7 A~~Ga~iG~~~g~~~~ga~iGa~vGa~~G~~ 37 (46)
T PF13488_consen 7 AAAGAAIGAATGGPGKGAAIGAAVGAAVGAA 37 (46)
T ss_pred HHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 5667777788888877777777777776654
No 74
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=33.87 E-value=2.2e+02 Score=21.86 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHH----HHHHHHHHhhhCCCCCH
Q psy1893 7 EDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAY----FIVSSNIEALVGRSIPD 67 (78)
Q Consensus 7 ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~----~L~~en~~lLiGes~~~ 67 (78)
||-....|++.+++|+++++++. . -+-++|.+...-|. --.|+-.+|=+|...|.
T Consensus 9 ~~~l~~~Givg~LigiYla~~~~--~----~~~~~gglgai~A~VwGa~tvRrva~YGLGTGVPS 67 (264)
T PRK01030 9 ENQLMALGIVGGLIGIYLAYFLP--V----LFSFFGGLGAIAAIVWGANTVRRVASYGLGTGVPS 67 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--h----HHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCc
Confidence 66778899999999999999922 2 22333333333332 33456666667766664
No 75
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=33.03 E-value=98 Score=19.94 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHh
Q psy1893 19 GSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLAQKML 75 (78)
Q Consensus 19 ~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~~~~I~~ 75 (78)
+.|..++.+.++| +.+..+|...+..+..+ .....|++..+++.+
T Consensus 6 ~~G~LiGll~~~p----l~G~~~GA~~Gal~G~l--------~d~gI~d~~~~ev~~ 50 (102)
T PF06897_consen 6 LWGLLIGLLFGPP----LLGAAVGAAAGALAGAL--------SDYGIDDEFIKEVGE 50 (102)
T ss_pred HHHHHHHHHhhhH----HHHHHHHHHHHHHHhHH--------hhCCCCHHHHHHHHh
Confidence 3445555555554 34445555554444442 344567776666653
No 76
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=32.87 E-value=1.5e+02 Score=19.63 Aligned_cols=43 Identities=19% Similarity=0.161 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHH-hCCccchHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 13 LSVLVAGSCMGLTLY-TGSHIPDAVGSFLVGGILGCVAYFIVSSN 56 (78)
Q Consensus 13 ~Gl~iA~~gi~l~~~-tG~p~~DgiaSi~IG~lL~~vA~~L~~en 56 (78)
.|.+.+++|-.++.. .|++. ....+++.-.+.+.++..+.++.
T Consensus 53 ~G~ivg~ig~~l~dll~g~~~-~~~~~~i~~~~~g~i~g~~~~~~ 96 (169)
T PF07155_consen 53 YGAIVGAIGDLLSDLLSGYGP-WAPFTMISKGLMGFIAGLIFRKK 96 (169)
T ss_pred HHHHHHHHHHHHHHHhCCCcc-ccHHHHHHHHHHHHHHHHHHHHh
Confidence 477888889999888 56663 34455555555566666666655
No 77
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=32.84 E-value=1.6e+02 Score=20.35 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 12 VLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSN 56 (78)
Q Consensus 12 ~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en 56 (78)
++|+.++++.... .+.+++....+ |+++|+.-+++.+...+.+
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~~~~~l-~~l~~~~~~~~~~~~~~~~ 54 (199)
T PF10112_consen 12 ILGVLIAAITFLV-SFFGFDHSFLL-SLLIGAVAFAVVYLFGKRR 54 (199)
T ss_pred HHHHHHHHHHHHH-HHHHhhHHHHH-HHHHHHHHHHHHHHhcccc
Confidence 4455444444333 33334444444 6666666555544444444
No 78
>PF04650 YSIRK_signal: YSIRK type signal peptide; InterPro: IPR005877 Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. ; GO: 0016020 membrane
Probab=32.80 E-value=35 Score=17.40 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHH
Q psy1893 35 AVGSFLVGGILG 46 (78)
Q Consensus 35 giaSi~IG~lL~ 46 (78)
|++|++||..+.
T Consensus 15 Gv~SV~ig~~~~ 26 (27)
T PF04650_consen 15 GVASVLIGTLFF 26 (27)
T ss_pred chhHHHHHHHHh
Confidence 678888887653
No 79
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=32.18 E-value=93 Score=23.81 Aligned_cols=43 Identities=9% Similarity=0.262 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH
Q psy1893 13 LSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSS 55 (78)
Q Consensus 13 ~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~e 55 (78)
.|++=++.|+.++.....++.-++.++++..+++++-.++.++
T Consensus 82 mG~ia~l~G~~i~~~~~~~l~~PI~~~iiA~IiG~vvG~la~~ 124 (262)
T PF04211_consen 82 MGIIAALAGLAIGGIGIPNLAGPIIALIIAAIIGAVVGLLANK 124 (262)
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4667777888888777777788899999999999998888763
No 80
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=32.00 E-value=1.1e+02 Score=20.31 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=34.7
Q ss_pred hhhhHHHHHHHHHHHHHHH---HHH-------hCC-ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 6 TEDAAAVLSVLVAGSCMGL---TLY-------TGS-HIPDAVGSFLVGGILGCVAYFIVSSNIE 58 (78)
Q Consensus 6 ~ED~aA~~Gl~iA~~gi~l---~~~-------tG~-p~~DgiaSi~IG~lL~~vA~~L~~en~~ 58 (78)
.-|..-++|++++..+... +.+ .|. ++-|--.-.++|..|.++.++|..|..+
T Consensus 39 ~~dg~~llgL~i~a~aFi~Va~~a~~ty~Ei~~Gk~~W~~fg~~v~VGviLLv~vIwLltkA~~ 102 (104)
T TIGR03745 39 GYDGGILLGLLIAAIAFIGVAYHALGTYHEIRTGKATWGDFGATVVVGAILLVVIIWLLTKATG 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhHHhCcchhhhHhHHHHHHHHHHHHHhh
Confidence 4577888888776554332 222 233 3345556678899999999999877654
No 81
>KOG1485|consensus
Probab=31.55 E-value=81 Score=25.54 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=32.1
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy1893 29 GSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVG 62 (78)
Q Consensus 29 G~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiG 62 (78)
|...+..++++++..+|+..+.-++++..+.+.|
T Consensus 178 G~~r~EtvG~i~~S~iMa~agv~ii~sSl~~i~~ 211 (412)
T KOG1485|consen 178 GRGRVETVGLIAVSVIMAMAGVQIIWSSLRLIVG 211 (412)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhc
Confidence 6677899999999999999999999999999999
No 82
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=31.33 E-value=59 Score=27.19 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccchH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIPDA 35 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~Dg 35 (78)
.+.+.|..+|..|..+=..|.||.-|+
T Consensus 403 ~a~l~G~~La~sG~~lQ~~~rNpLa~P 429 (668)
T PRK10577 403 AALLAGAMLAVAGTLLQRLTRNPLASP 429 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 367889999999999999999999985
No 83
>PLN02601 beta-carotene hydroxylase
Probab=30.95 E-value=1.6e+02 Score=23.05 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHH---HHhhhCCCCCHHHHHHHH
Q psy1893 7 EDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSN---IEALVGRSIPDDYLAQKM 74 (78)
Q Consensus 7 ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en---~~lLiGes~~~e~~~~I~ 74 (78)
-|.-|++-.++|..-+.++..+....+--.-++..|+.+-.++++++-+- +++-.|..++..-.++++
T Consensus 181 NDlFaVifAvpAIaL~~~G~~~~g~~p~~~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~~Y~rrl~ 251 (303)
T PLN02601 181 NDVFAIVNAVPAIGLLYYGFFNKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRKVA 251 (303)
T ss_pred ccchhhhhHHHHHHHHHHhhccccccHHHHHHHHHhHHHHHHHHHHHhhhhhccccccCCCCCCHHHHHHH
Confidence 47777777777777777777643333222346789999999999998764 455566555444444443
No 84
>PF12669 P12: Virus attachment protein p12 family
Probab=30.89 E-value=55 Score=19.13 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q psy1893 39 FLVGGILGCVAYF 51 (78)
Q Consensus 39 i~IG~lL~~vA~~ 51 (78)
|+|+++++..+++
T Consensus 2 iII~~Ii~~~~~~ 14 (58)
T PF12669_consen 2 IIIGIIILAAVAY 14 (58)
T ss_pred eeHHHHHHHHHHH
Confidence 3455444444444
No 85
>PF15179 Myc_target_1: Myc target protein 1
Probab=30.10 E-value=62 Score=23.79 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1893 36 VGSFLVGGILGCVAYFIV 53 (78)
Q Consensus 36 iaSi~IG~lL~~vA~~L~ 53 (78)
--|++||++++...+.|.
T Consensus 26 ~vSm~iGLviG~li~~Ll 43 (197)
T PF15179_consen 26 CVSMAIGLVIGALIWALL 43 (197)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 368888988888877664
No 86
>PRK08456 flagellar motor protein MotA; Validated
Probab=29.94 E-value=1.1e+02 Score=22.48 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHH
Q psy1893 10 AAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVS 54 (78)
Q Consensus 10 aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~ 54 (78)
.+++|++-++..+.=....|..++-++-+-+-|+++.+..+.=..
T Consensus 160 GTVlGlI~~~~~l~dp~~lg~gIa~ALvtT~yGl~vAn~~~~Pia 204 (257)
T PRK08456 160 GAVMGLMLALQKLDNPAEMAAGIAGAFTATVTGIMGSYALFGPWG 204 (257)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666555543334555566666666666666655544333
No 87
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=29.78 E-value=1.5e+02 Score=19.79 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhC-CccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1893 17 VAGSCMGLTLYTG-SHIPDAVGSFLVGGILGCVAYFIVSSNIEALV 61 (78)
Q Consensus 17 iA~~gi~l~~~tG-~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLi 61 (78)
+.+...+++.... +|.+-..-.++-++.|.+.++...|+..+---
T Consensus 41 ~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~~ 86 (191)
T PF01810_consen 41 ILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSSKS 86 (191)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCcch
Confidence 4555667777777 99999999999999999999999998766544
No 88
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=29.41 E-value=95 Score=20.86 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=18.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q psy1893 32 IPDAVGSFLVGGILGCVAYFIV 53 (78)
Q Consensus 32 ~~DgiaSi~IG~lL~~vA~~L~ 53 (78)
-=|-+.+++||.+++.+|..|+
T Consensus 4 ~~~~l~G~liGgiiGa~aaLL~ 25 (115)
T COG4980 4 GKDFLFGILIGGIIGAAAALLF 25 (115)
T ss_pred cchHHHHHHHHHHHHHHHHHHh
Confidence 3466788999999999998876
No 89
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=28.98 E-value=68 Score=26.82 Aligned_cols=27 Identities=7% Similarity=-0.023 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccchH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIPDA 35 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~Dg 35 (78)
.+.+.|..++..|..+=..|.||.-|+
T Consensus 68 ~a~l~G~~La~sG~~lQ~l~rNpLA~P 94 (668)
T PRK10577 68 IALLVGAALGLAGALLQQVLRNPLASP 94 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 467889999999999999999999985
No 90
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.72 E-value=1.3e+02 Score=18.82 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy1893 38 SFLVGGILGCVAYFIVSSNIEALVGRS 64 (78)
Q Consensus 38 Si~IG~lL~~vA~~L~~en~~lLiGes 64 (78)
++++|++++ +|++|+-..-.+.+-
T Consensus 13 ~ll~G~~~G---~fiark~~~k~lk~N 36 (71)
T COG3763 13 ALLAGLIGG---FFIARKQMKKQLKDN 36 (71)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhC
Confidence 455555554 677777665555544
No 91
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=28.38 E-value=2.8e+02 Score=21.33 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHH----HHHHHHHhhhCCCCCH
Q psy1893 6 TEDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYF----IVSSNIEALVGRSIPD 67 (78)
Q Consensus 6 ~ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~----L~~en~~lLiGes~~~ 67 (78)
=|+.....|++.+++|++++++++ + + .-++|.+...-|.. -.|+-.+|=+|...|.
T Consensus 15 p~~~i~~~Givg~LigiYla~~~~-~----~-~~~~ggl~ai~A~vwGa~tvRrvasYGLGTGVPS 74 (265)
T TIGR01148 15 PEQTIMALGIVGGLVGIYLGNFFP-P----A-GPLIGGLGAICATVWGADAVRRVASYGLGTGVPS 74 (265)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcc-h----H-HHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCc
Confidence 366778899999999999999954 2 2 33555555444433 3455566667766654
No 92
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=28.31 E-value=1.8e+02 Score=19.28 Aligned_cols=47 Identities=28% Similarity=0.171 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHH---HHHHhCCccchHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 10 AAVLSVLVAGSCMG---LTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSN 56 (78)
Q Consensus 10 aA~~Gl~iA~~gi~---l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en 56 (78)
+-+.|..++.-+.. +++.+|+|+.=+.-+-.+|.+...+...+.++.
T Consensus 6 a~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~ 55 (138)
T PF04657_consen 6 ALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP 55 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45667777766654 677889999999999999999998888777763
No 93
>PRK09543 znuB high-affinity zinc transporter membrane component; Reviewed
Probab=27.85 E-value=1.3e+02 Score=22.02 Aligned_cols=21 Identities=10% Similarity=-0.040 Sum_probs=11.2
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q psy1893 31 HIPDAVGSFLVGGILGCVAYF 51 (78)
Q Consensus 31 p~~DgiaSi~IG~lL~~vA~~ 51 (78)
-.-|+..+++.+..+...-.+
T Consensus 80 ~~~d~~iGi~~s~~~a~g~~l 100 (261)
T PRK09543 80 LAIDTLLGIMAHSALSLGLVV 100 (261)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 344666666665555444333
No 94
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=27.81 E-value=2.3e+02 Score=20.32 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCccchHHHH
Q psy1893 11 AVLSVLVAGSCMGLTLYTGSHIPDAVGS 38 (78)
Q Consensus 11 A~~Gl~iA~~gi~l~~~tG~p~~DgiaS 38 (78)
.+..+.++++|...+...|.+++....=
T Consensus 179 ~~~~l~L~ilG~~~a~~s~~~~~~~~lr 206 (229)
T COG1814 179 ILALLALAILGAVLARLSGASIAKSILR 206 (229)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 4556666777777777777776665544
No 95
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=27.74 E-value=79 Score=21.96 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1893 35 AVGSFLVGGILGCVAYFIVSS 55 (78)
Q Consensus 35 giaSi~IG~lL~~vA~~L~~e 55 (78)
-+||+++|++++..++++.+-
T Consensus 110 ~~Gg~l~Gli~~~~~Y~ls~~ 130 (154)
T TIGR03546 110 VMGSFVVGLILLPPAFAISKV 130 (154)
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 468999999999988887764
No 96
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=27.53 E-value=2e+02 Score=19.57 Aligned_cols=37 Identities=8% Similarity=-0.068 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH
Q psy1893 16 LVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSS 55 (78)
Q Consensus 16 ~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~e 55 (78)
+..++|.+++++.+.. |.. +++.|++-...++.+.|-
T Consensus 87 l~li~ga~l~~~~~~~--e~~-~~~~~~~g~~~g~~~~r~ 123 (154)
T PRK10862 87 VGLFLGAALFQLLFGS--DLA-ALCGALLGGVGGFLLARG 123 (154)
T ss_pred HHHHHHHHHHHHHhcc--hHH-HHHHHHHHHHHHHHHHHH
Confidence 3344455555555443 444 344444444555555553
No 97
>KOG1483|consensus
Probab=27.25 E-value=1e+02 Score=24.98 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=32.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q psy1893 30 SHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIP 66 (78)
Q Consensus 30 ~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~ 66 (78)
-.+.|++-||++-.++.+.|+-+.||...-|+=..|.
T Consensus 261 ~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~ 297 (404)
T KOG1483|consen 261 AYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPG 297 (404)
T ss_pred hhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCC
Confidence 3578999999999999999999999999998875443
No 98
>PRK14013 hypothetical protein; Provisional
Probab=27.16 E-value=2.9e+02 Score=21.83 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=29.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 4 RQTEDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIE 58 (78)
Q Consensus 4 V~~ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~ 58 (78)
+.+|..+.. .+.++|+-+--..+.++++-+...++..+++..-+.-.+.|++
T Consensus 281 ~yLe~ga~~---~I~~lgvkmll~~~~~IPe~vs~~i~~~~i~~si~~S~~~~r~ 332 (338)
T PRK14013 281 VYLEHGAHY---AIGALAVIMLLSIGVHIPEVITGLIGVALIGLAFWSSIRYNRR 332 (338)
T ss_pred HhhhccHHH---HHHHHHHHHHHhcCcCCcHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467777776 4555555554446778888665544444443333333466664
No 99
>cd03386 PAP2_Aur1_like PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.
Probab=27.05 E-value=2.1e+02 Score=19.47 Aligned_cols=34 Identities=29% Similarity=0.214 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhCCcc-chHHHHHHHHHHHHHH
Q psy1893 15 VLVAGSCMGLTLYTGSHI-PDAVGSFLVGGILGCV 48 (78)
Q Consensus 15 l~iA~~gi~l~~~tG~p~-~DgiaSi~IG~lL~~v 48 (78)
.+.+..=..-+..+|+++ .|.++|+++|.+....
T Consensus 147 ~~~~~~i~~s~v~~~~H~~~Dv~~G~~l~~~~~~~ 181 (186)
T cd03386 147 VLWPLLIWLSTLYLGNHYFIDLVGGIALALLSFYL 181 (186)
T ss_pred HHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHH
Confidence 333333334466677765 6999999988875443
No 100
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=26.97 E-value=2.5e+02 Score=20.29 Aligned_cols=26 Identities=23% Similarity=0.045 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy1893 39 FLVGGILGCVAYFIVSSNIEALVGRS 64 (78)
Q Consensus 39 i~IG~lL~~vA~~L~~en~~lLiGes 64 (78)
+...+.+..++.++.---++.+-|++
T Consensus 167 ~~~s~~~~~~aL~~~G~~~a~~~~~~ 192 (218)
T cd02432 167 VPVTIIATLLALALTGYVSARLGGAS 192 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 33344444444444444444444443
No 101
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=26.54 E-value=2.6e+02 Score=21.27 Aligned_cols=42 Identities=10% Similarity=-0.005 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1893 19 GSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEAL 60 (78)
Q Consensus 19 ~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lL 60 (78)
+.++.+.+..........-....|++++.++.++.+++.+..
T Consensus 72 ~~~~~l~~~~~~~~~~~~le~~S~~lii~lGl~ll~r~~r~~ 113 (279)
T PRK10019 72 FGGMYLSRRFTAQSAEPWLQLISAVIIISTAFWMFWRTWRGE 113 (279)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444554443446677888899999999999999877664
No 102
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=25.72 E-value=2.4e+02 Score=19.72 Aligned_cols=27 Identities=7% Similarity=0.111 Sum_probs=20.6
Q ss_pred hCCccchHHHHHHHHHHHHHHHHHHHH
Q psy1893 28 TGSHIPDAVGSFLVGGILGCVAYFIVS 54 (78)
Q Consensus 28 tG~p~~DgiaSi~IG~lL~~vA~~L~~ 54 (78)
.=||.+.+...++||++.....+++=|
T Consensus 173 ~inp~l~~~~~iiig~i~~~~~~~lkk 199 (206)
T PF06570_consen 173 VINPVLPPWVYIIIGVIAFALRFYLKK 199 (206)
T ss_pred cCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 347788999999999888777766544
No 103
>PLN02525 phosphatidic acid phosphatase family protein
Probab=24.83 E-value=2.2e+02 Score=22.25 Aligned_cols=55 Identities=16% Similarity=0.036 Sum_probs=32.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCC--------cc----chHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy1893 5 QTEDAAAVLSVLVAGSCMGLTLYTGS--------HI----PDAVGSFLVGGILGCVAYFIVSSNIEALVG 62 (78)
Q Consensus 5 ~~ED~aA~~Gl~iA~~gi~l~~~tG~--------p~----~DgiaSi~IG~lL~~vA~~L~~en~~lLiG 62 (78)
.+||++|..|+.+- +-++.+... |. -.++...+.=+++++.-+++-|+-...+..
T Consensus 201 ~f~ds~af~GV~~G---i~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~R~~~Gv~~v~~~r~~~K~~~~ 267 (352)
T PLN02525 201 SFEYHTAFNGVAFG---IVAGVQQTYSQFHHEAAPRIFSPQLPIAAFLGRVAVGIPTILAVKFCSKALAK 267 (352)
T ss_pred CHHHHHHHHHHHHH---HHhhhhhhcccccCccCCccCCccchHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 47999999998653 333333221 11 134445555666777777777777666643
No 104
>PLN02250 lipid phosphate phosphatase
Probab=24.45 E-value=3e+02 Score=21.17 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCc--cchHHHHHHHHHHHHHHHHHHHH
Q psy1893 19 GSCMGLTLYTGSH--IPDAVGSFLVGGILGCVAYFIVS 54 (78)
Q Consensus 19 ~~gi~l~~~tG~p--~~DgiaSi~IG~lL~~vA~~L~~ 54 (78)
...+++|....+. .-|-++|.+||+...+..+..-.
T Consensus 208 A~lVa~SRI~dy~Hh~sDVlaG~lIG~~~A~~~y~~~f 245 (314)
T PLN02250 208 AALVGVSRVDDYWHHWQDVFAGALIGLTVASFCYLQFF 245 (314)
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3346677776555 78999999999988877776533
No 105
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=24.43 E-value=2.9e+02 Score=20.83 Aligned_cols=39 Identities=3% Similarity=-0.094 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCc---cchHHHHHHHHHHHHHH
Q psy1893 10 AAVLSVLVAGSCMGLTLYTGSH---IPDAVGSFLVGGILGCV 48 (78)
Q Consensus 10 aA~~Gl~iA~~gi~l~~~tG~p---~~DgiaSi~IG~lL~~v 48 (78)
+.+.|+.+.-.|.++.|..+++ .++--=+...+++|-.+
T Consensus 240 s~laG~a~~~~~~g~~H~l~h~l~~~~~i~HG~~~a~~lp~v 281 (367)
T cd08182 240 SLLAGLAISNTRTTAAHAISYPLTSRYGVPHGLACALTLPAL 281 (367)
T ss_pred HHHHHHHHhchhHHHHHHHhchhhcCCCCChHHHHHHHHHHH
Confidence 4456888888888888888776 35656666666666443
No 106
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=24.43 E-value=77 Score=21.98 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy1893 9 AAAVLSVLVAGSCMGLTLY 27 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~ 27 (78)
.++++|+++.++|+.++..
T Consensus 41 ~~l~lG~lvllvGiaMAv~ 59 (141)
T PF10177_consen 41 LFLLLGILVLLVGIAMAVL 59 (141)
T ss_pred HHHHHHHHHHHHhhHhhee
Confidence 5788999999999987643
No 107
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=24.00 E-value=2.7e+02 Score=21.16 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHH
Q psy1893 11 AVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYF 51 (78)
Q Consensus 11 A~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~ 51 (78)
|++|++.-.....=-..|...+--+.-.|++|+.|.+++..
T Consensus 19 a~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~gG~ 59 (254)
T TIGR00808 19 AVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVGGV 59 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHccc
Confidence 55666655555555567778888888899999999988654
No 108
>PRK08124 flagellar motor protein MotA; Validated
Probab=23.81 E-value=1.3e+02 Score=22.31 Aligned_cols=31 Identities=6% Similarity=0.225 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-C---CccchHHHH
Q psy1893 8 DAAAVLSVLVAGSCMGLTLYT-G---SHIPDAVGS 38 (78)
Q Consensus 8 D~aA~~Gl~iA~~gi~l~~~t-G---~p~~DgiaS 38 (78)
|.+.++|+++++..+..+... | ..+||.-+=
T Consensus 2 d~~tiiG~~~~~~~i~~g~~~~gg~~~~~~~~~~~ 36 (263)
T PRK08124 2 DITTIIGLILGLIAVVVGMVVKGASLAVLLNPAAI 36 (263)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCChHHHhhHHHH
Confidence 788999999999999988765 4 234775443
No 109
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.45 E-value=2.2e+02 Score=18.52 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=20.5
Q ss_pred HhC--CccchHHHHHHHHHHHHHHHHHHH
Q psy1893 27 YTG--SHIPDAVGSFLVGGILGCVAYFIV 53 (78)
Q Consensus 27 ~tG--~p~~DgiaSi~IG~lL~~vA~~L~ 53 (78)
.|. ++-|=+.-|++||++|+.++..+-
T Consensus 27 kT~~v~~K~iPlIs~viGilLG~~~~~~~ 55 (93)
T PF06946_consen 27 KTKVVPNKWIPLISVVIGILLGAAAYPLT 55 (93)
T ss_pred HhccCCcchhhHHHHHHHHHHHHHhhhcC
Confidence 355 566778899999999998876544
No 110
>PLN02731 Putative lipid phosphate phosphatase
Probab=22.97 E-value=3.4e+02 Score=21.15 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCc--cchHHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 17 VAGSCMGLTLYTGSH--IPDAVGSFLVGGILGCVAYFIVSSNI 57 (78)
Q Consensus 17 iA~~gi~l~~~tG~p--~~DgiaSi~IG~lL~~vA~~L~~en~ 57 (78)
+....+++|....+. ..|-+++.++|++..+..+.--....
T Consensus 224 l~A~lIalSRV~Dy~Hh~sDVlaG~lLG~~iA~~~Y~~yfp~~ 266 (333)
T PLN02731 224 LFAALVGISRVDDYWHHWQDVFAGGLLGLAISTICYLQFFPPP 266 (333)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 334456777776654 78999999999988877766544433
No 111
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=22.91 E-value=3.1e+02 Score=20.03 Aligned_cols=24 Identities=8% Similarity=0.075 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccc
Q psy1893 10 AAVLSVLVAGSCMGLTLYTGSHIP 33 (78)
Q Consensus 10 aA~~Gl~iA~~gi~l~~~tG~p~~ 33 (78)
.++.++.+++.|.+.+.++|.+++
T Consensus 186 ~~~~~~~L~~lG~~~a~~s~~~~~ 209 (234)
T cd02433 186 VLLVGLALLATGAVTGLLSGRSPG 209 (234)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcHH
Confidence 334444445555555555554444
No 112
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.79 E-value=66 Score=22.43 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=16.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q psy1893 32 IPDAVGSFLVGGILGCVAYFIVS 54 (78)
Q Consensus 32 ~~DgiaSi~IG~lL~~vA~~L~~ 54 (78)
+.=+..++++|+.++++..++..
T Consensus 8 W~~a~igLvvGi~IG~li~Rlt~ 30 (138)
T COG3105 8 WEYALIGLVVGIIIGALIARLTN 30 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 33456678888888888777654
No 113
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.77 E-value=2.5e+02 Score=18.95 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy1893 38 SFLVGGILGCVAYFIVSSNIEALVGR 63 (78)
Q Consensus 38 Si~IG~lL~~vA~~L~~en~~lLiGe 63 (78)
|..+|+.+...+..++--+..++.-.
T Consensus 38 s~~lg~~~lAlg~vL~~~g~~~~~~~ 63 (191)
T PF04156_consen 38 SFILGIALLALGVVLLSLGLLCLLSK 63 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555555555566666666555443
No 114
>PLN02715 lipid phosphate phosphatase
Probab=22.68 E-value=2.2e+02 Score=22.05 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCc--cchHHHHHHHHHHHHHHHHHHH
Q psy1893 20 SCMGLTLYTGSH--IPDAVGSFLVGGILGCVAYFIV 53 (78)
Q Consensus 20 ~gi~l~~~tG~p--~~DgiaSi~IG~lL~~vA~~L~ 53 (78)
..+++|....+. ..|-++|.++|+...+..+...
T Consensus 233 ~lIalSRv~Dy~Hh~sDVlaG~lLG~~~a~~~y~~~ 268 (327)
T PLN02715 233 CLVGISRVDDYWHHWQDVFAGALIGILVAAFCYRQF 268 (327)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677766654 8899999999988776666544
No 115
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=22.35 E-value=2.4e+02 Score=18.48 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy1893 35 AVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLA 71 (78)
Q Consensus 35 giaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~~~ 71 (78)
++-+.++|.++..+++.-..- .+.-++++|++.++
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~l--~~~~~~~~~~~~r~ 119 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYIIL--GFFCPIKEPESMRE 119 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHcCCCCchhcCc
Confidence 788888888888888665443 33334445554444
No 116
>KOG0224|consensus
Probab=22.18 E-value=85 Score=24.62 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcc
Q psy1893 10 AAVLSVLVAGSCMGLTLYTGSHI 32 (78)
Q Consensus 10 aA~~Gl~iA~~gi~l~~~tG~p~ 32 (78)
+.++|++++.+|+.++.-+|+|+
T Consensus 201 p~~iG~lv~~Ig~s~G~N~Gyai 223 (316)
T KOG0224|consen 201 PLVIGILVVAIGMSLGYNTGYAI 223 (316)
T ss_pred HHHHHHHHHHHHHHhhcccCccc
Confidence 46789999999999998888764
No 117
>PRK08124 flagellar motor protein MotA; Validated
Probab=21.90 E-value=2.2e+02 Score=21.03 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHH
Q psy1893 11 AVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYF 51 (78)
Q Consensus 11 A~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~ 51 (78)
+++|++-++-.+.=....|..++-++-+-+-|+++.+..+.
T Consensus 162 TVlGlI~~f~~l~~p~~lg~gIa~ALitT~yGl~vA~~~~~ 202 (263)
T PRK08124 162 AVIGLIAALGNLSDIEKLGHAISAAFVATLLGIFTGYVLWH 202 (263)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544433334444455555555566666655443
No 118
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=21.61 E-value=2e+02 Score=20.88 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHH
Q psy1893 14 SVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFI 52 (78)
Q Consensus 14 Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L 52 (78)
|+.-+.++...+..+| -+++-+.+++++++++.++
T Consensus 141 ~~As~v~a~~fs~~~~----t~igi~g~ail~a~v~s~I 175 (187)
T PF01024_consen 141 GAASAVAAFAFSFILG----TPIGILGIAILMAVVGSLI 175 (187)
T ss_dssp TCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHh
Confidence 3334444444555555 5566667777777777654
No 119
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=21.29 E-value=3.4e+02 Score=20.33 Aligned_cols=47 Identities=11% Similarity=-0.037 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy1893 18 AGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRS 64 (78)
Q Consensus 18 A~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes 64 (78)
+....-+++.++++.++.++.....+....+.+...|.-+...=||-
T Consensus 268 ~~at~~l~~~~~~~~~~~la~~~~~~~~~~~~~v~~~tl~~~~~g~l 314 (324)
T PRK10764 268 ATTGLHLGHGSDNGFFHTLAVPLFIFANFIIALLLLRTLALLMQGKL 314 (324)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 44556677778999999999999988888888888887766666654
No 120
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=20.95 E-value=72 Score=21.78 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHhhhC
Q psy1893 64 SIPDDYLAQKMLLQS 78 (78)
Q Consensus 64 s~~~e~~~~I~~~~~ 78 (78)
++|||+.++|.+.|+
T Consensus 99 PIDP~VIaAIHHwQk 113 (122)
T PF04530_consen 99 PIDPEVIAAIHHWQK 113 (122)
T ss_pred CCCHHHHHHHHHHHh
Confidence 679999999999984
No 121
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=20.95 E-value=1.2e+02 Score=18.33 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCC
Q psy1893 40 LVGGILGCVAYFIVSSNIEALVGRS 64 (78)
Q Consensus 40 ~IG~lL~~vA~~L~~en~~lLiGes 64 (78)
++|-+.+.++.+-+.|-.++|+|.+
T Consensus 25 Vlg~~~giigslqA~eaik~l~g~~ 49 (84)
T PF05237_consen 25 VLGPVVGIIGSLQANEAIKLLLGIG 49 (84)
T ss_dssp B-HHHHHHHHHHHHHHHHHHHCT-S
T ss_pred cccchHHHHHHHHHHHHHHHHHhcC
Confidence 5788889999999999999999863
No 122
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.91 E-value=2.1e+02 Score=17.35 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhhCCC
Q psy1893 48 VAYFIVSSNIEALVGRS 64 (78)
Q Consensus 48 vA~~L~~en~~lLiGes 64 (78)
.+++++|....--+.|-
T Consensus 13 ~Gff~ar~~~~k~l~~N 29 (64)
T PF03672_consen 13 IGFFIARKYMEKQLKEN 29 (64)
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 35566665555444443
No 123
>PF13548 DUF4126: Domain of unknown function (DUF4126)
Probab=20.80 E-value=3.2e+02 Score=19.35 Aligned_cols=38 Identities=24% Similarity=0.071 Sum_probs=24.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH
Q psy1893 5 QTEDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSS 55 (78)
Q Consensus 5 ~~ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~e 55 (78)
..||..++.+.++|+.-- +...++-+++...++++.|+
T Consensus 138 ~~ED~~a~~ls~lai~~P-------------~la~~~~~~~l~~~~~~~~r 175 (177)
T PF13548_consen 138 TAEDVLAVGLSLLAIFHP-------------VLALVLVVLLLLLAIRLLRR 175 (177)
T ss_pred HHHHHHHHHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHh
Confidence 689999999988887543 33444445555555555553
No 124
>PF06582 DUF1136: Repeat of unknown function (DUF1136); InterPro: IPR010939 This family consists of several eukaryote specific repeats of unknown function. This repeat seems to always be found with IPR007110 from INTERPRO.
Probab=20.66 E-value=96 Score=15.75 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=14.2
Q ss_pred hhCCCCCHHHHHHHHhhh
Q psy1893 60 LVGRSIPDDYLAQKMLLQ 77 (78)
Q Consensus 60 LiGes~~~e~~~~I~~~~ 77 (78)
++.++-.|+-.++|..|+
T Consensus 1 I~~dTQhp~~lekIq~LE 18 (28)
T PF06582_consen 1 IILDTQHPESLEKIQELE 18 (28)
T ss_pred CcccccCHHHHHHHHHHH
Confidence 356788899889988875
No 125
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=20.61 E-value=1.4e+02 Score=17.96 Aligned_cols=23 Identities=4% Similarity=0.170 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy1893 37 GSFLVGGILGCVAYFIVSSNIEA 59 (78)
Q Consensus 37 aSi~IG~lL~~vA~~L~~en~~l 59 (78)
+.+++++-+.+.++++++--+++
T Consensus 2 a~lI~Aiaf~vLvi~l~~~l~~l 24 (90)
T PF06103_consen 2 AGLIAAIAFAVLVIFLIKVLKKL 24 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445554555555555444443
No 126
>PRK03001 M48 family peptidase; Provisional
Probab=20.54 E-value=3.5e+02 Score=19.80 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh-----hCCCCCHHHHHHHHhh
Q psy1893 11 AVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEAL-----VGRSIPDDYLAQKMLL 76 (78)
Q Consensus 11 A~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lL-----iGes~~~e~~~~I~~~ 76 (78)
++++.+++.+|.++....+ -+...++++.+.....++.-.-...+ +.+.-.|+.++.++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~p~L~~~v~~l 76 (283)
T PRK03001 11 AAITALFIVIGGMIGGSQG-----MLIALLFALGMNFFSYWFSDKMVLKMYNAQEVDENTAPQFYRMVREL 76 (283)
T ss_pred HHHHHHHHHHHHHHhchhh-----HHHHHHHHHHHHHHHHHHhHHHHHHHcCCEECCccccHHHHHHHHHH
Confidence 3444555555555543222 22333444444444443332222222 3444446788877765
No 127
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=20.50 E-value=3.7e+02 Score=20.07 Aligned_cols=41 Identities=7% Similarity=0.239 Sum_probs=27.1
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHhh
Q psy1893 30 SHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLAQKMLL 76 (78)
Q Consensus 30 ~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~~~~I~~~ 76 (78)
...+++..|++=-+++..+.++.-+. ++....|.++++.+.
T Consensus 72 ~e~~eg~~~liA~~li~~m~~wm~~~------~~~~~~~~~~~~~~~ 112 (306)
T PF03239_consen 72 EELFEGAISLIAVALITWMVFWMRRH------GRKMKGEWEDKLAKA 112 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhchhHHHHHHHH
Confidence 36778888887777777777777665 444555555555443
No 128
>COG4280 Predicted membrane protein [Function unknown]
Probab=20.29 E-value=1.5e+02 Score=22.25 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q psy1893 35 AVGSFLVGGILGCVAYFIVSSNIEALVGRSI 65 (78)
Q Consensus 35 giaSi~IG~lL~~vA~~L~~en~~lLiGes~ 65 (78)
-.-=+++|.+|...+++..|..++...|+-.
T Consensus 64 n~lqiv~gvLLllFG~rw~Rsavrr~ag~rk 94 (236)
T COG4280 64 NYLQIVSGVLLLLFGYRWIRSAVRRFAGIRK 94 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhchhc
Confidence 4556899999999999999999999998644
No 129
>PRK10699 phosphatidylglycerophosphatase B; Provisional
Probab=20.25 E-value=2.1e+02 Score=21.25 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=27.3
Q ss_pred hCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy1893 28 TGSHI-PDAVGSFLVGGILGCVAYFIVSSNIEALVG 62 (78)
Q Consensus 28 tG~p~-~DgiaSi~IG~lL~~vA~~L~~en~~lLiG 62 (78)
.|.|+ -|-++|.++|..++..+..+.++-.+.+..
T Consensus 204 LGvH~psDVlaG~llG~~~~~l~~~l~~~~~~~~~~ 239 (244)
T PRK10699 204 LGMHWPRDLVVATLISWLLVTVATWLAQRICGPLTP 239 (244)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 56555 499999999999999998888765555544
No 130
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=20.15 E-value=1.9e+02 Score=16.48 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHH
Q psy1893 17 VAGSCMGLTLYTGSHIPDAVGSFLVGGIL 45 (78)
Q Consensus 17 iA~~gi~l~~~tG~p~~DgiaSi~IG~lL 45 (78)
..+.|..+++..+. ++...+..+=|++|
T Consensus 36 ~~~~G~~~G~~~~~-~~~~~~~~igg~iL 63 (67)
T PF02659_consen 36 MPLLGLLLGRRLGR-FIGSYAEWIGGIIL 63 (67)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33444444444443 33333444333333
No 131
>cd03392 PAP2_like_2 PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=20.13 E-value=2.8e+02 Score=18.46 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=20.6
Q ss_pred HhCCcc-chHHHHHHHHHHHHHHHHHHHH
Q psy1893 27 YTGSHI-PDAVGSFLVGGILGCVAYFIVS 54 (78)
Q Consensus 27 ~tG~p~-~DgiaSi~IG~lL~~vA~~L~~ 54 (78)
+.|.++ -|-++|.++|.....+...+.+
T Consensus 152 ~lg~H~~sDvl~G~~lG~~~~~~~~~~~~ 180 (182)
T cd03392 152 YLGVHYPSDVLAGWLLGLAWLALLILLYR 180 (182)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 345554 7999999999988877766543
No 132
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=20.12 E-value=4.1e+02 Score=20.37 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHH----HHHHHHHhhhCCCCCH
Q psy1893 7 EDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYF----IVSSNIEALVGRSIPD 67 (78)
Q Consensus 7 ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~----L~~en~~lLiGes~~~ 67 (78)
|+-....|++-.++|++++++... .+-++|.+...-|.. -.|+-.+|=+|...|.
T Consensus 16 ~~~l~~~Givg~ligiYla~~~~~------~~~~~gglgav~A~VwGadtvRrvasYGLGTGVPS 74 (262)
T PF04211_consen 16 ENKLMALGIVGGLIGIYLAYFLPV------LFSFIGGLGAVCAIVWGADTVRRVASYGLGTGVPS 74 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHhchHHHHHHHhccCCCCCcc
Confidence 566678999999999999986544 344555555554443 3455566667766654
Done!