Query psy1893
Match_columns 78
No_of_seqs 104 out of 423
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 18:56:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h90_A Ferrous-iron efflux pum 98.8 3.6E-10 1.2E-14 81.0 -0.1 67 6-76 148-214 (283)
2 3j1z_P YIIP, cation efflux fam 98.8 1.6E-08 5.3E-13 73.8 6.5 50 27-76 174-223 (306)
3 3j1z_P YIIP, cation efflux fam 89.1 1.7 5.9E-05 31.1 7.3 57 8-64 48-111 (306)
4 3h90_A Ferrous-iron efflux pum 88.2 2.2 7.6E-05 29.9 7.2 56 7-62 38-100 (283)
5 4g1u_A Hemin transport system 53.8 11 0.00038 28.1 3.4 26 9-34 84-109 (357)
6 2qi9_A Vitamin B12 import syst 49.5 35 0.0012 24.8 5.4 27 9-35 62-88 (326)
7 2nq2_A Hypothetical ABC transp 43.1 21 0.00072 26.1 3.4 27 9-35 68-94 (337)
8 2jwa_A Receptor tyrosine-prote 40.3 36 0.0012 18.5 3.2 17 34-50 12-28 (44)
9 2i88_A Colicin-E1; protein-mem 36.2 33 0.0011 24.0 3.3 43 4-51 134-176 (191)
10 3p5n_A RIBU, riboflavin uptake 32.0 75 0.0026 21.0 4.5 43 13-56 62-106 (189)
11 2ckx_A NGTRF1, telomere bindin 25.9 43 0.0015 19.9 2.2 17 61-77 61-77 (83)
12 2aje_A Telomere repeat-binding 23.6 27 0.00093 21.9 1.0 17 61-77 74-90 (105)
13 2jo1_A Phospholemman; FXYD1, N 21.7 1.3E+02 0.0045 17.9 3.7 22 36-57 18-39 (72)
14 2k1k_A Ephrin type-A receptor 20.5 1E+02 0.0035 15.8 3.2 14 33-46 10-23 (38)
No 1
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=98.83 E-value=3.6e-10 Score=81.05 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=56.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHhh
Q psy1893 6 TEDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLAQKMLL 76 (78)
Q Consensus 6 ~ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~~~~I~~~ 76 (78)
..|....+|+++++.+ .++|+|++|+++|++|++++.+.++.+.|||.+.|+|+++|++..++|++.
T Consensus 148 ~~D~~~s~~vli~~~~----~~~g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~~~~~~~~i~~~ 214 (283)
T 3h90_A 148 QSDVMMNGAILLALGL----SWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDI 214 (283)
T ss_dssp HHHHCCCSCSCSSSCS----CSTTSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4566666666555432 478999999999999999999999999999999999999999999888764
No 2
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=98.75 E-value=1.6e-08 Score=73.84 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=47.5
Q ss_pred HhCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHhh
Q psy1893 27 YTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDDYLAQKMLL 76 (78)
Q Consensus 27 ~tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes~~~e~~~~I~~~ 76 (78)
++|+|++|+++|++|++++++.++.++|||.+.|+|+++|++.+++|++.
T Consensus 174 ~~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~ 223 (306)
T 3j1z_P 174 QYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLI 223 (306)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HhCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHH
Confidence 57999999999999999999999999999999999999999999998864
No 3
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=89.11 E-value=1.7 Score=31.10 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH-------hCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy1893 8 DAAAVLSVLVAGSCMGLTLY-------TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRS 64 (78)
Q Consensus 8 D~aA~~Gl~iA~~gi~l~~~-------tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiGes 64 (78)
...-++..++++.+...+.. +|......+++++.|+++..+++++.+|....++-..
T Consensus 48 sl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~~~l~~~~~~i~~eai~~l~~p~ 111 (306)
T 3j1z_P 48 SFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQSAFIMGSAFLLLFYGGERLLNPS 111 (306)
T ss_dssp TTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhheecCC
Confidence 34566777888888888864 5777899999999999999999999999999888643
No 4
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=88.17 E-value=2.2 Score=29.86 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-------hCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy1893 7 EDAAAVLSVLVAGSCMGLTLY-------TGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVG 62 (78)
Q Consensus 7 ED~aA~~Gl~iA~~gi~l~~~-------tG~p~~DgiaSi~IG~lL~~vA~~L~~en~~lLiG 62 (78)
....-++..++++.+..++.. .|+..+..+++++.|+++..+++++.+|....++.
T Consensus 38 hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~eai~~l~~ 100 (283)
T 3h90_A 38 DSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLIS 100 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344566777888888888765 46667899999999999999999999999988875
No 5
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=53.83 E-value=11 Score=28.13 Aligned_cols=26 Identities=19% Similarity=0.060 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccch
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIPD 34 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~D 34 (78)
.|.+.|..++..|..+=..|.||..|
T Consensus 84 ~a~lvGaaLavsG~~~Q~~~rNPLA~ 109 (357)
T 4g1u_A 84 LAVVVGCALAVSGTIMQGLFRNPLAD 109 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 46789999999999999999999999
No 6
>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 4dbl_A 1l7v_A*
Probab=49.51 E-value=35 Score=24.82 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccchH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIPDA 35 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~Dg 35 (78)
.+.+.|..++..|..+=..++||.-|+
T Consensus 62 ~a~lvG~~La~sG~~~Q~l~rNpLa~P 88 (326)
T 2qi9_A 62 AVLLVGAALAISGAVMQALFENPLAEP 88 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCG
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 467889999999999988999999874
No 7
>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=43.05 E-value=21 Score=26.11 Aligned_cols=27 Identities=15% Similarity=-0.034 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccchH
Q psy1893 9 AAAVLSVLVAGSCMGLTLYTGSHIPDA 35 (78)
Q Consensus 9 ~aA~~Gl~iA~~gi~l~~~tG~p~~Dg 35 (78)
.+.+.|..++..|..+-..|+||.-|+
T Consensus 68 ~a~lvGa~la~aG~~~Q~l~rNpLa~P 94 (337)
T 2nq2_A 68 TALCVGAGLALSGVVLQGIFRNPLVNP 94 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhcc
Confidence 367899999999999999999999983
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=40.25 E-value=36 Score=18.46 Aligned_cols=17 Identities=29% Similarity=0.171 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy1893 34 DAVGSFLVGGILGCVAY 50 (78)
Q Consensus 34 DgiaSi~IG~lL~~vA~ 50 (78)
-.+++.+||+++.++..
T Consensus 12 ~~Ia~~vVGvll~vi~~ 28 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLG 28 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 35788888866555443
No 9
>2i88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin structure, voltage-gated channel, membrane protein; 2.50A {Escherichia coli}
Probab=36.17 E-value=33 Score=23.99 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=26.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHH
Q psy1893 4 RQTEDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYF 51 (78)
Q Consensus 4 V~~ED~aA~~Gl~iA~~gi~l~~~tG~p~~DgiaSi~IG~lL~~vA~~ 51 (78)
+-+|=.++..|+.- .++...+..+|.|+ +.+.+++++++++.+
T Consensus 134 lelEs~a~~~gaa~-~vA~~fS~~~g~p~----gi~g~aii~a~v~s~ 176 (191)
T 2i88_A 134 LTLEKKAADAGVSY-VVALLFSLLAGTTL----GIWGIAIVTGILCSY 176 (191)
T ss_dssp HHHHHHHGGGTHHH-HHHHHHHHHHTCCC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHcchH----HHHHHHHHHHHHHHH
Confidence 45666665555442 24456678889885 455555666666654
No 10
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=31.95 E-value=75 Score=20.98 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHh-CC-ccchHHHHHHHHHHHHHHHHHHHHHH
Q psy1893 13 LSVLVAGSCMGLTLYT-GS-HIPDAVGSFLVGGILGCVAYFIVSSN 56 (78)
Q Consensus 13 ~Gl~iA~~gi~l~~~t-G~-p~~DgiaSi~IG~lL~~vA~~L~~en 56 (78)
.|.+.+++...++..+ |. |.+ ...+.+.+...+.++.++-|++
T Consensus 62 ~g~~~~~l~~ll~~l~~g~~~~g-~~~~~l~~~~~g~~~~~~y~k~ 106 (189)
T 3p5n_A 62 AGIIVALVKNLLNYLFSMGDPVG-PFANFLAGASFLLTAYAIYKNK 106 (189)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSSH-HHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 3556666666666554 43 555 6777888888888888776654
No 11
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=25.91 E-value=43 Score=19.95 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=14.6
Q ss_pred hCCCCCHHHHHHHHhhh
Q psy1893 61 VGRSIPDDYLAQKMLLQ 77 (78)
Q Consensus 61 iGes~~~e~~~~I~~~~ 77 (78)
-|++.|++..++|.++|
T Consensus 61 ~~~~~p~~~~~rv~~~~ 77 (83)
T 2ckx_A 61 RGEPVPQDLLDRVLAAH 77 (83)
T ss_dssp CSSCCCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 48899999999998876
No 12
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=23.59 E-value=27 Score=21.90 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=14.9
Q ss_pred hCCCCCHHHHHHHHhhh
Q psy1893 61 VGRSIPDDYLAQKMLLQ 77 (78)
Q Consensus 61 iGes~~~e~~~~I~~~~ 77 (78)
-|+..|++..++|++++
T Consensus 74 rg~~~P~~~l~rv~~~~ 90 (105)
T 2aje_A 74 RGEPVPQELLNRVLNAH 90 (105)
T ss_dssp TCCSCCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 38899999999999886
No 13
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=21.75 E-value=1.3e+02 Score=17.90 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1893 36 VGSFLVGGILGCVAYFIVSSNI 57 (78)
Q Consensus 36 iaSi~IG~lL~~vA~~L~~en~ 57 (78)
+++++++.+|..+++.++..++
T Consensus 18 iGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHcCc
Confidence 5777777778777777765553
No 14
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=20.53 E-value=1e+02 Score=15.84 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=9.4
Q ss_pred chHHHHHHHHHHHH
Q psy1893 33 PDAVGSFLVGGILG 46 (78)
Q Consensus 33 ~DgiaSi~IG~lL~ 46 (78)
--++++++||.+.+
T Consensus 10 ~GaIAGiVvG~v~g 23 (38)
T 2k1k_A 10 GGEIVAVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCceeeeehHHHHH
Confidence 34678888887644
Done!