RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1893
(78 letters)
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family. Members of this
family are integral membrane proteins, that are found to
increase tolerance to divalent metal ions such as
cadmium, zinc, and cobalt. These proteins are thought to
be efflux pumps that remove these ions from cells.
Length = 273
Score = 38.4 bits (90), Expect = 8e-05
Identities = 14/66 (21%), Positives = 27/66 (40%)
Query: 7 EDAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIP 66
VL L + L L TG I D + S L+ ++ ++ ++ L+G S
Sbjct: 133 HALVDVLGSLAVLIGLLLILLTGLPIADPLASLLIALLILYTGLRLLKESLSELLGASPD 192
Query: 67 DDYLAQ 72
+ + +
Sbjct: 193 PELVDE 198
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 304
Score = 31.5 bits (72), Expect = 0.022
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 8 DAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPD 67
D L+VLV L G D + + L+ + + + ++ L+ ++
Sbjct: 159 DVLTSLAVLVGL----LGSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDP 214
Query: 68 D 68
+
Sbjct: 215 E 215
>gnl|CDD|218030 pfam04332, DUF475, Protein of unknown function (DUF475). Predicted
to be an integral membrane protein with multiple
membrane spans.
Length = 294
Score = 28.1 bits (63), Expect = 0.34
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 13 LSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSS 55
+S ++ + + + + + + L G+LG + Y +V
Sbjct: 117 ISAIIVFVLLLIFAFFFTAPAEQFQTVLFAGLLGLLTYLLVDG 159
>gnl|CDD|220432 pfam09835, DUF2062, Uncharacterized protein conserved in bacteria
(DUF2062). This domain, found in various prokaryotic
proteins, has no known function.
Length = 148
Score = 27.1 bits (61), Expect = 0.61
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 36 VGSFLVGGILGCVAYFIV 53
+GS ++G +L + YF+V
Sbjct: 116 LGSLVLGLVLALLGYFLV 133
>gnl|CDD|217547 pfam03419, Peptidase_U4, Sporulation factor SpoIIGA.
Length = 291
Score = 27.2 bits (61), Expect = 0.69
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 14 SVLVAGSCMGLTLYTGSHIPDAVG--------SFLVGGILGCVAYFIVSSNIEALVGRSI 65
+ L G L +TG+ G F++ G + Y E + R I
Sbjct: 95 TFLFGGGLFALHYFTGTGSLVQNGIFGDPISWKFVLIGFP--ILYIFSKRRWEYIKRRKI 152
Query: 66 PDDYL 70
+ +
Sbjct: 153 QYELI 157
>gnl|CDD|216577 pfam01569, PAP2, PAP2 superfamily. This family includes the enzyme
type 2 phosphatidic acid phosphatase (PAP2),
Glucose-6-phosphatase EC:3.1.3.9,
Phosphatidylglycerophosphatase B EC:3.1.3.27 and
bacterial acid phosphatase EC:3.1.3.2. The family also
includes a variety of haloperoxidases that function by
oxidising halides in the presence of hydrogen peroxide
to form the corresponding hypohalous acids.
Length = 123
Score = 26.3 bits (58), Expect = 1.2
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 9 AAAVLSVLVAGSCMGLTLYTGSHIP-DAVGSFLVGGILGCVAYFIVSSNIE 58
L+ LV S +Y G+H P D + L+G ++ + Y ++ E
Sbjct: 77 LLLALAALVGLS----RVYLGAHFPSDVLAGALLGALVALLVYRLLKKLRE 123
>gnl|CDD|219689 pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of
this family are glucose/sorbosone dehydrogenases that
possess a beta-propeller fold.
Length = 324
Score = 26.3 bits (59), Expect = 1.3
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 23 GLTLYTGSHIPDAVGSFLVGG 43
G+ YTG P+ G VG
Sbjct: 254 GMAFYTGDAFPEWKGDLFVGA 274
>gnl|CDD|172710 PRK14222, PRK14222, camphor resistance protein CrcB; Provisional.
Length = 124
Score = 25.8 bits (57), Expect = 1.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 43 GILGCVAYFIVSSNIEALVGRSIPDDYLA 71
G LGC+A + +S + AL GR+ P LA
Sbjct: 11 GALGCLARYYLSGWVYALFGRAFPYGTLA 39
>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase.
Length = 296
Score = 25.5 bits (56), Expect = 2.8
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 19 GSCMGLTLYTGSHIPDAVG 37
G+ +GL Y SHIPD G
Sbjct: 111 GTDLGL--YRKSHIPDGPG 127
>gnl|CDD|147296 pfam05038, Cytochrom_B558a, Cytochrome Cytochrome b558
alpha-subunit. Cytochrome b-245 light chain (p22-phox)
is one of the key electron transfer elements of the
NADPH oxidase in phagocytes.
Length = 186
Score = 25.6 bits (56), Expect = 3.0
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 26 LYTGSHIPDAVGSFLVGGILGCVAYFIVSS 55
L+ +P FL+ ILG V FI S
Sbjct: 92 LHLALCVP---AGFLLATILGTVCLFIASI 118
>gnl|CDD|215190 PLN02332, PLN02332, membrane bound O-acyl transferase (MBOAT)
family protein.
Length = 465
Score = 25.4 bits (56), Expect = 3.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 10 AAVLSVLVAGSCMGLTLYTGSHIP 33
A + ++L A CMGL LY P
Sbjct: 209 ATLRALLQAAICMGLYLYLTPQFP 232
>gnl|CDD|237726 PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I;
Provisional.
Length = 473
Score = 25.6 bits (57), Expect = 3.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 35 AVGSFLVGGILGCVAYFI 52
AVG FL G LG + YF+
Sbjct: 208 AVGFFLTAGFLGMMYYFV 225
>gnl|CDD|237583 PRK14013, PRK14013, hypothetical protein; Provisional.
Length = 338
Score = 25.2 bits (56), Expect = 3.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 13 LSVLVAGSCMGLTLYTGSHIP-DAVGSFLVGGILGCVAYFIV 53
+SV+VA + L +P D + L+ G+LG + Y IV
Sbjct: 161 ISVIVALVLL---LIFSLLLPADEALTVLIAGLLGLLTYLIV 199
>gnl|CDD|239480 cd03385, PAP2_BcrC_like, PAP2_like proteins, BcrC_like subfamily.
Several members of this family have been annotated as
bacitracin transport permeases, as it was suspected that
they form the permease component of an ABC transporter
system. It was shown, however, that BcrC from Bacillus
subtilis posesses undecaprenyl pyrophosphate (UPP)
phospatase activity, and it is hypothesized that it
competes with bacitracin for UPP, increasing the cell's
resistance to bacitracin.
Length = 144
Score = 24.9 bits (55), Expect = 4.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 9 AAAVLSVLVAGSCMGLTLYTGSHIP-DAVGSFLVGGILGCVAYFI 52
+L++LVA S +Y G H P D +G+ LV +L + F
Sbjct: 105 ILLILALLVAWS----RIYLGVHYPLDMLGAALV-AVLSALLVFQ 144
>gnl|CDD|239489 cd03395, PAP2_like_4, PAP2_like_4 proteins. PAP2 is a super-family
of phosphatases and haloperoxidases. This subgroup,
which is specific to bacteria, lacks functional
characterization and may act as a membrane-associated
lipid phosphatase.
Length = 177
Score = 24.9 bits (55), Expect = 4.1
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 12 VLSVLVAGSCMGLTLYTGSHIP-DAVGSFLVGGILGCVAYFI 52
+ ++LV S +Y G H P D + L+G I G + Y +
Sbjct: 136 LWALLVGYS----RVYVGVHYPGDVIAGALIGIISGLLFYLL 173
>gnl|CDD|233586 TIGR01820, TrpE-arch, anthranilate synthase component I, archaeal
clade. This model represents an archaeal clade of
anthranilate synthase component I enzymes. This enzyme
is responsible for the first step of tryptophan
biosynthesis from chorismate. The Sulfolobus enzyme has
been reported to be part of a gene cluster for Trp
biosynthesis [Amino acid biosynthesis, Aromatic amino
acid family].
Length = 435
Score = 25.0 bits (55), Expect = 4.2
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 31 HIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIPDD 68
+IP F GG++G +AY V E +V +
Sbjct: 74 NIPGEDRRFK-GGLVGYIAYDAVRDYWEGIVDLKRKAE 110
>gnl|CDD|237397 PRK13488, PRK13488, chemoreceptor glutamine deamidase CheD;
Provisional.
Length = 157
Score = 24.5 bits (54), Expect = 5.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 11 AVLSVLVAGSCMGLTLY 27
V+ GSC+G+ LY
Sbjct: 18 EVIETSGLGSCVGIILY 34
>gnl|CDD|129862 TIGR00780, ccoN, cytochrome c oxidase, cbb3-type, subunit I. This
model represents the largest subunit, I, of the
ccb3-type cytochrome c oxidase, with two protohemes and
copper. It shows strong homology to subunits of other
types of cytochrome oxidases. Species with this type,
all from the Proteobacteria so far, include Neisseria
meningitidis, Helicobacter pylori, Campylobacter jejuni,
Rhodobacter sphaeroides, Rhizobium leguminosarum, and
others. Gene symbols ccoN and fixN are synonymous
[Energy metabolism, Electron transport].
Length = 474
Score = 24.8 bits (54), Expect = 5.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 34 DAVGSFLVGGILGCVAYFI 52
+AVG FL G LG + YF+
Sbjct: 207 NAVGFFLTAGFLGMMYYFL 225
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding
protein Lhcb6 (CP24); Provisional.
Length = 255
Score = 24.5 bits (53), Expect = 6.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 10 AAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILG 46
AAV+ + V + G+ + P A+ F G +LG
Sbjct: 108 AAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLG 144
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.387
Gapped
Lambda K H
0.267 0.0800 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,930,845
Number of extensions: 316491
Number of successful extensions: 482
Number of sequences better than 10.0: 1
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 60
Length of query: 78
Length of database: 10,937,602
Length adjustment: 47
Effective length of query: 31
Effective length of database: 8,852,964
Effective search space: 274441884
Effective search space used: 274441884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)