RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1893
         (78 letters)



>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
           cell inner membrane, cell membrane, ION transport, iron
           transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
          Length = 283

 Score = 30.2 bits (69), Expect = 0.036
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 8   DAAAVLSVLVAGSCMGLTL-YTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGRSIP 66
           D     ++L+      L L + G H  DA+ +  +G  +   A  +    +++L+ R++P
Sbjct: 150 DVMMNGAILL-----ALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALP 204

Query: 67  DDYLAQ 72
           D+   +
Sbjct: 205 DEERQE 210


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.0 bits (67), Expect = 0.051
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 30/76 (39%)

Query: 22   MGLTLYTGS------------HIPDAVGSFLVGGILGCVAYFIVSSNIEALV-------G 62
            MG+ LY  S            H  D  G F    IL      IV +N   L        G
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYG-F---SILD-----IVINNPVNLTIHFGGEKG 1681

Query: 63   RSIPDDYLAQKMLLQS 78
            + I ++Y A  M+ ++
Sbjct: 1682 KRIRENYSA--MIFET 1695


>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor,
           pyrolloquinoline quinone (PQQ), quinoprotein, sugar
           binding protein; HET: MSE; 1.50A {Escherichia coli K12}
          Length = 353

 Score = 27.7 bits (62), Expect = 0.32
 Identities = 4/21 (19%), Positives = 6/21 (28%)

Query: 23  GLTLYTGSHIPDAVGSFLVGG 43
           G+  Y     P       +G 
Sbjct: 275 GMAFYNSDKFPQWQQKLFIGA 295


>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
           secreted, protease, PALM hydrolase, developmental
           protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
           sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
          Length = 463

 Score = 27.6 bits (61), Expect = 0.35
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 19  GSCMGLTLYTGSHIPDAVGSFLVG 42
           G  +G  +Y G       GS++ G
Sbjct: 276 GPLVGGFVYRGCQSERLYGSYVFG 299


>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase,
           aldose sugar dehydrogenase, BET propeller fold,
           oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum}
           PDB: 3a9h_A*
          Length = 354

 Score = 27.3 bits (61), Expect = 0.47
 Identities = 5/21 (23%), Positives = 7/21 (33%)

Query: 23  GLTLYTGSHIPDAVGSFLVGG 43
           G +   G   P   G  L+  
Sbjct: 263 GASFVHGDMFPGLRGWLLIAC 283


>3pty_A Arabinosyltransferase C; beta-sandwich, carbohydrate binding,
          carbohydrate; HET: AFO; 2.00A {Mycobacterium
          tuberculosis}
          Length = 406

 Score = 24.5 bits (53), Expect = 4.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 36 VGSFLVGGILGCVAYFIVSSNIEALVGRS 64
          V S     I    A+ +  SN++AL G++
Sbjct: 2  VVSLTQAMISQYPAWSVGRSNLQALAGKT 30


>2jaf_A Halorhodopsin, HR; chromophore, chloride pump, ION transport,
           membrane, chloride, receptor, ION pump, transport,
           sensory transduction; HET: BOG PLM RET; 1.7A
           {Halobacterium salinarium} PDB: 2jag_A* 1e12_A*
          Length = 274

 Score = 23.9 bits (51), Expect = 7.9
 Identities = 8/46 (17%), Positives = 18/46 (39%)

Query: 8   DAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIV 53
           D  ++ +V+ A   M +T    +    A+        + C  + +V
Sbjct: 130 DLGSLFTVIAADIGMCVTGLAAAMTTSALLFRWAFYAISCAFFVVV 175


>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane
           channel protein, transport PROT; HET: BOG; 2.10A
           {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A*
           1ldi_A*
          Length = 281

 Score = 23.7 bits (52), Expect = 8.7
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 7/34 (20%)

Query: 40  LVGGILGCVAYFIVSSNIEALVGRSIPDDYLAQK 73
           +VG I+G  AY         L+GR +P D    +
Sbjct: 241 IVGAIVGAFAY-------RKLIGRHLPCDICVVE 267


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,169,137
Number of extensions: 59628
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 15
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)