RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1893
         (78 letters)



>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
           {Escherichia coli [TaxId: 562]}
          Length = 204

 Score = 31.3 bits (70), Expect = 0.007
 Identities = 9/56 (16%), Positives = 22/56 (39%)

Query: 8   DAAAVLSVLVAGSCMGLTLYTGSHIPDAVGSFLVGGILGCVAYFIVSSNIEALVGR 63
              + + +  A        + G H  DA+ +  +G  +   A  +    +++L+ R
Sbjct: 149 HYQSDVMMNGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDR 204


>d2f9zc1 d.194.1.3 (C:1-157) Chemoreceptor glutamine deamidase
          CheD {Thermotoga maritima [TaxId: 2336]}
          Length = 157

 Score = 22.3 bits (48), Expect = 8.7
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 8  DAAAVLSVLVAGSCMGLTLY 27
              V+  L  GSC+ + + 
Sbjct: 14 KNPGVIVTLGLGSCVAVCMR 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0502    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 263,718
Number of extensions: 9386
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 7
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)