BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1894
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ENK|A Chain A, Solution Structure Of A Putativ Dna-Binding Domain Of The
Humansolute Carrier Family 30 (Zinc Transporter) Protein
Length = 101
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 68/92 (73%), Gaps = 2/92 (2%)
Query: 108 TERNFITPNRAMSDFLLKQSDLEGLKVIKRRSPYENEPPISVYWRKDVEAKAIQVWGSKE 167
T+ NFIT RA+++F LK SDLE L+ I+RRSP+E+ +VY R DVEAK+++VWGS E
Sbjct: 10 TQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEVWGSPE 69
Query: 168 RLLQE-RLKNELERKYQQQHIFTMKRKLRDYR 198
L +E +L+ E E +Y+++ +F ++ LR+YR
Sbjct: 70 ALAREKKLRKEAEIEYRER-LFRNQKILREYR 100
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 9 VQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGAR 68
+Q+ I+ ++IFSK+ C YC MAK +F + V K VELD + G+ QD L ++TG R
Sbjct: 42 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGER 101
Query: 69 SQP 71
+ P
Sbjct: 102 TVP 104
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 9 VQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGAR 68
+Q+ I+ ++IFSK+ C YC MAK +F + V K VELD + G+ QD L ++TG R
Sbjct: 28 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGER 87
Query: 69 SQP 71
+ P
Sbjct: 88 TVP 90
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 9 VQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGAR 68
+Q+ I+ ++IFSK+ C YC MAK +F + V K VELD + G+ QD L ++TG R
Sbjct: 20 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGER 79
Query: 69 SQP 71
+ P
Sbjct: 80 TVP 82
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 12 LIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQP 71
LI +++IFSKSYCP+ K++F L V +ELD DDG +Q+VL EIT ++ P
Sbjct: 13 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVP 72
Query: 72 S 72
+
Sbjct: 73 N 73
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 9 VQDLIASEKILIFSKSYCPYCKMA-KDVFQKLKVTPKT----VELDHRDDGDSIQDVLLE 63
V+DLI +++ + +K+YCPYCK +FQ+L V PK+ +ELD +G IQD L E
Sbjct: 30 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNV-PKSKALVLELDEMSNGSEIQDALEE 88
Query: 64 ITGARSQPS 72
I+G ++ P+
Sbjct: 89 ISGQKTVPN 97
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 9 VQDLIASEKILIFSKSYCPYCKMA-KDVFQKLKVTPKT----VELDHRDDGDSIQDVLLE 63
V+DLI +++ + +K+YCPYCK +FQ+L V PK+ +ELD +G IQD L E
Sbjct: 10 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNV-PKSKALVLELDEMSNGSEIQDALEE 68
Query: 64 ITGARSQPS 72
I+G ++ P+
Sbjct: 69 ISGQKTVPN 77
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 6/69 (8%)
Query: 9 VQDLIASEKILIFSKSYCPYCKMA-KDVFQKLKVTPKT----VELDHRDDGDSIQDVLLE 63
V+DLIA +I + SK+YCPYC A +F+KLKV P++ ++L+ +G IQ L E
Sbjct: 18 VKDLIAENEIFVASKTYCPYCHAALNTLFEKLKV-PRSKVLVLQLNDMKEGADIQAALYE 76
Query: 64 ITGARSQPS 72
I G R+ P+
Sbjct: 77 INGQRTVPN 85
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin
Glutatione Reductase From Schistosoma Mansoni In
Complex With Auranofin
Length = 598
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 1 MNPA--SKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQ 58
M PA + Q+++ + S +++FSK+ CPYCK KDV + K+ T+ELD +G +IQ
Sbjct: 1 MPPADGTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQ 60
Query: 59 DVLLEITGARSQP 71
L + + P
Sbjct: 61 KCLASFSKIETVP 73
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni In Complex With Nadph
Length = 598
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 1 MNPA--SKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQ 58
M PA + Q+++ + S +++FSK+ CPYCK KDV + K+ T+ELD +G +IQ
Sbjct: 1 MPPADGTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQ 60
Query: 59 DVLLEITGARSQP 71
L + + P
Sbjct: 61 KCLASFSKIETVP 73
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 1 MNPA--SKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQ 58
M PA + Q+++ + S +++FSK+ CPYCK KDV + K+ T+ELD +G +IQ
Sbjct: 1 MPPADGTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQ 60
Query: 59 DVLLEITGARSQP 71
L + + P
Sbjct: 61 KCLASFSKIETVP 73
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 6/69 (8%)
Query: 9 VQDLIASEKILIFSKSYCPYCKMA-KDVFQKLKVTPKT----VELDHRDDGDSIQDVLLE 63
V+DLI +++ + +K+YCPY K +FQ+L V PK+ +ELD +G IQD L E
Sbjct: 13 VKDLIGQKEVFVAAKTYCPYSKATLSTLFQELNV-PKSKALVLELDEMSNGSEIQDALEE 71
Query: 64 ITGARSQPS 72
I+G ++ P+
Sbjct: 72 ISGQKTVPN 80
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 117
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 10 QDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARS 69
++L +S +++FSK+YC YC K + ++ + K VELD DG +Q L TG +
Sbjct: 15 KELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGT 74
Query: 70 QPS 72
P+
Sbjct: 75 VPN 77
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1
From Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1
From Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1
From Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1
From Populus Tremula X Tremuloides
Length = 116
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 10 QDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARS 69
++L +S +++FSK+YC YC K + ++ + K VELD DG +Q L TG +
Sbjct: 14 KELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGT 73
Query: 70 QPS 72
P+
Sbjct: 74 VPN 76
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 7 QFVQDLIASEKILIFSKSYCPYCKMA-KDVFQKLKVTPKT----VELDHRDDGDSIQDVL 61
+ V+DLIA +I + SK+YCPY A +F+KLKV P++ ++L+ +G IQ L
Sbjct: 8 KHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKV-PRSKVLVLQLNDMKEGADIQAAL 66
Query: 62 LEITGARSQPS 72
EI G R+ P+
Sbjct: 67 YEINGQRTVPN 77
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
Query: 9 VQDLIASEKILIFSKSYCPYCKMA-KDVFQKLKVTPKT----VELDHRDDGDSIQDVLLE 63
V+DLIA +I + SK+YCPY A +F+KLKV P++ ++L+ +G IQ L E
Sbjct: 254 VKDLIAENEIFVASKTYCPYSHAALNTLFEKLKV-PRSKVLVLQLNDMKEGADIQAALYE 312
Query: 64 ITGARSQPS 72
I G R+ P+
Sbjct: 313 INGQRTVPN 321
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5
From Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5
From Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5
From Arabidopsis Thaliana
Length = 113
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 9 VQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQDVLLEITGA 67
++ + ++I+SK++C YC K +F++L V P VELD G +Q VL +TG
Sbjct: 12 IRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQ 71
Query: 68 RSQPS 72
+ P+
Sbjct: 72 HTVPN 76
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 9 VQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQDVLLEITGA 67
V+ +A ++++SK++C Y K +F++L V P VELD G IQ VL +TG
Sbjct: 11 VKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLTGQ 70
Query: 68 RSQPS 72
+ P+
Sbjct: 71 HTVPN 75
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 5 SKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVE---LDHRDDGDSIQDVL 61
+++FV I K+++F K CPYC+ A+++ +L + +E + + + IQD L
Sbjct: 2 AQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYL 61
Query: 62 LEITGARSQP 71
++TGAR+ P
Sbjct: 62 QQLTGARTVP 71
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex
With Glutathione
Length = 105
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 5 SKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVE---LDHRDDGDSIQDVL 61
+++FV I K+++F K CPY + A+++ +L + +E + + + IQD L
Sbjct: 1 AQEFVNSKIQPGKVVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYL 60
Query: 62 LEITGARSQP 71
++TGAR+ P
Sbjct: 61 QQLTGARTVP 70
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 5 SKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVE---LDHRDDGDSIQDVL 61
++ FV I K+++F K CP+C+ +++ +L +E + D + IQD L
Sbjct: 1 AQAFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYL 60
Query: 62 LEITGARSQP 71
++TGAR+ P
Sbjct: 61 QQLTGARTVP 70
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 5 SKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKV---TPKTVELDHRDDGDSIQDVL 61
+++FVQ +A+ K+ IF K CP+C+ A D+ K + V++ + ++D
Sbjct: 8 AEEFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYF 67
Query: 62 LEITGARSQP 71
+ITG ++ P
Sbjct: 68 EQITGGKTVP 77
>pdb|1D4U|A Chain A, Interactions Of Human Nucleotide Excision Repair Protein
Xpa With Rpa70 And Dna: Chemical Shift Mapping And 15n
Nmr Relaxation Studies
Length = 111
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 102 DLSVSSTERNFITPNRAMSDFLLKQSDLEG----LKVIKRRSPYENE-PPISVYWRKDVE 156
D + + IT A ++LLK DLE LK I +++P+ ++ + +Y + +
Sbjct: 31 DCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIV 90
Query: 157 AKAIQVWGSKERL 169
++++VWGS+E L
Sbjct: 91 KRSLEVWGSQEAL 103
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 5 SKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKV---TPKTVELDHRDDGDSIQDVL 61
+++FVQ +A+ K+ IF K P+C+ A D+ K + V++ + ++D
Sbjct: 8 AEEFVQQRLANNKVTIFVKYTXPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYF 67
Query: 62 LEITGARSQP 71
+ITG ++ P
Sbjct: 68 EQITGGKTVP 77
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 18 ILIFSKSYCPYCKMAKDVFQ-KLKVTPK--TVELDHRDDGDSIQDVLLEITGARSQPS 72
I+IFSKS C Y K K++ + + + P +ELD G+ +Q+ + +TG + P+
Sbjct: 16 IIIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPN 73
>pdb|1XPA|A Chain A, Solution Structure Of The Dna-And Rpa-Binding Domain Of
The Human Repair Factor Xpa, Nmr, 1 Structure
Length = 122
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 106 SSTERNFITPNRAMSDFLLKQSDLEG----LKVIKRRSPYENE-PPISVYWRKDVEAKAI 160
+ + IT A ++LLK DLE LK I +++P+ ++ + +Y + + +++
Sbjct: 35 ADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSL 94
Query: 161 QVWGSKERL 169
+VWGS+E L
Sbjct: 95 EVWGSQEAL 103
>pdb|1EGO|A Chain A, Nmr Structure Of Oxidized Escherichia Coli Glutaredoxin:
Comparison With Reduced E. Coli Glutaredoxin And
Functionally Related Proteins
pdb|1EGR|A Chain A, Sequence-Specific 1h N.M.R. Assignments And
Determination Of The Three-Dimensional Structure Of
Reduced Escherichia Coli Glutaredoxin
Length = 85
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKL 39
+ +IF +S CPYC AKD+ +KL
Sbjct: 2 QTVIFGRSGCPYCVRAKDLAEKL 24
>pdb|3GL5|A Chain A, Crystal Structure Of Probable Dsba Oxidoreductase
Sco1869 From Streptomyces Coelicolor
Length = 239
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 16/83 (19%)
Query: 17 KILIFSKSYCPYCKMAKDVFQK----------LKVTPKTVELDHRDDGDSIQDVLLEITG 66
++ I+S CP+C + K F+K ++V ++ ELD D +Q VL +T
Sbjct: 4 RVEIWSDIACPWCYVGKARFEKALAAFPHRDGVEVVHRSFELDPGRAKDDVQPVLTXLTA 63
Query: 67 ------ARSQPSDNDLEEKPKAE 83
++Q +++L + AE
Sbjct: 64 KYGXSQEQAQAGEDNLGAQAAAE 86
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 16 EKILIFSKSYCPYCKMAKDVFQKLKV 41
++I+++++ CPYCK A+D+ K V
Sbjct: 6 KEIILYTRPNCPYCKRARDLLDKKGV 31
>pdb|1A8L|A Chain A, Protein Disulfide Oxidoreductase From Archaeon Pyrococcus
Furiosus
Length = 226
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 5 SKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKV 41
+KQ ++++ +IL+F CPYC +A + K +
Sbjct: 125 TKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAI 161
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 14 ASEKILI--FSKSYCPYCKMAKDVFQKL 39
S+K+++ F+ S+CP CKM +F +L
Sbjct: 24 GSQKLIVVDFTASWCPPCKMIAPIFAEL 51
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 16 EKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDH 50
E I IF+K CP+C AK + ++ + + L H
Sbjct: 170 ESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGH 204
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 7 QFVQDLIASEKILI--FSKSYCPYCKMAKDVFQKLKVTPKTVELD-HRDDGDSIQDVLLE 63
QF Q + +K+++ F ++C CKM VF+K+ TP ++ ++ D D + E
Sbjct: 25 QFKQ-VTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQE 83
Query: 64 ITGARSQPS 72
+ G R+ P+
Sbjct: 84 V-GIRAMPT 91
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced
Form
Length = 110
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 15 SEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD 52
S+ I+ F K+ CP+CK + V K V + D
Sbjct: 20 SDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVD 57
>pdb|2HQY|A Chain A, Crystal Structure Of Conserved Protein Of Unknown Function
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2HQY|B Chain B, Crystal Structure Of Conserved Protein Of Unknown Function
From Bacteroides Thetaiotaomicron Vpi-5482
Length = 305
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 99 IRVDLSVSSTERNFITPNRAMSDFLLKQSDLEGLK 133
+R DL ER T +RA +D++ +SDL LK
Sbjct: 100 MRADLEAILPERFIFTEDRAYADYIYLRSDLATLK 134
>pdb|1QFN|A Chain A, Glutaredoxin-1-Ribonucleotide Reductase B1 Mixed
Disulfide Bond
pdb|1GRX|A Chain A, Structure Of E. Coli Glutaredoxin
Length = 85
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKL 39
+ +IF +S CPY AKD+ +KL
Sbjct: 2 QTVIFGRSGCPYSVRAKDLAEKL 24
>pdb|2G2Q|A Chain A, The Crystal Structure Of G4, The Poxviral Disulfide
Oxidoreductase Essential For Cytoplasmic Disulfide Bond
Formation
pdb|2G2Q|B Chain B, The Crystal Structure Of G4, The Poxviral Disulfide
Oxidoreductase Essential For Cytoplasmic Disulfide Bond
Formation
pdb|2G2Q|C Chain C, The Crystal Structure Of G4, The Poxviral Disulfide
Oxidoreductase Essential For Cytoplasmic Disulfide Bond
Formation
Length = 124
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELD----HRDDGDS 56
++IF K YC C+ D ++LK + +D DGDS
Sbjct: 5 LIIFGKPYCSICENVSDAVEELKSEYDILHVDILSFFLKDGDS 47
>pdb|3LGC|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis
pdb|3MSZ|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
pdb|3MSZ|B Chain B, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
Length = 89
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 15 SEKILIFSKSYCPYCKMAKDVFQKLKVT 42
+ K+ I++++ CPYC AK F++ +
Sbjct: 3 AXKVKIYTRNGCPYCVWAKQWFEENNIA 30
>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
Length = 226
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 5 SKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKV 41
SK+ V + +ILIF CPYC +A + K +
Sbjct: 125 SKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAI 161
>pdb|1HBZ|A Chain A, Catalase From Micrococcus Lysodeikticu
Length = 498
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 22/30 (73%)
Query: 152 RKDVEAKAIQVWGSKERLLQERLKNELERK 181
R+DV+A+A + W + + + +R+++E++R
Sbjct: 453 RQDVQARAFEYWKNVDATIGQRIEDEVKRH 482
>pdb|1GWH|A Chain A, Atomic Resolution Structure Of Micrococcus Lysodeikticus
Catalase Complexed With Nadph
pdb|1GWE|A Chain A, Atomic Resolution Structure Of Micrococcus Lysodeikticus
Catalase
Length = 503
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 22/30 (73%)
Query: 152 RKDVEAKAIQVWGSKERLLQERLKNELERK 181
R+DV+A+A + W + + + +R+++E++R
Sbjct: 458 RQDVQARAFEYWKNVDATIGQRIEDEVKRH 487
>pdb|1V5V|A Chain A, Crystal Structure Of A Component Of Glycine Cleavage
System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5
A Resolution
pdb|1V5V|B Chain B, Crystal Structure Of A Component Of Glycine Cleavage
System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5
A Resolution
Length = 401
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 19/101 (18%)
Query: 83 EKKILEIPVEAVAKPRIRVDLSVSSTERNFITPNRAMSDFLLKQSDLEGLKVIKRRSPYE 142
E K +I + AV P+ R DL+ + F M F + +L+G+K++ RS Y
Sbjct: 145 ELKTYDIAMFAVQGPKAR-DLA----KDLFGIDINEMWWFQARWVELDGIKMLLSRSGYT 199
Query: 143 NEPPISVYW-----------RKDVEAKAIQVWGSKERLLQE 172
E VY ++ KA+ VW ER+L+E
Sbjct: 200 GENGFEVYIEDANPYHPDESKRGEPEKALHVW---ERILEE 237
>pdb|1GWF|A Chain A, Compound Ii Structure Of Micrococcus Lysodeikticus
Catalase
Length = 503
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 22/30 (73%)
Query: 152 RKDVEAKAIQVWGSKERLLQERLKNELERK 181
R+DV+A+A + W + + + +R+++E++R
Sbjct: 458 RQDVQARAFEYWKNVDATIGQRIEDEVKRH 487
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,155,459
Number of Sequences: 62578
Number of extensions: 236507
Number of successful extensions: 724
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 60
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)