Query psy1894
Match_columns 228
No_of_seqs 221 out of 1311
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 18:57:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00598 rad14 DNA repair pro 100.0 1.2E-38 2.7E-43 265.8 9.2 99 108-208 30-133 (172)
2 KOG4017|consensus 100.0 2.1E-37 4.6E-42 269.2 7.3 102 108-211 135-240 (274)
3 COG5145 RAD14 DNA excision rep 100.0 1.2E-32 2.6E-37 237.2 5.7 122 94-225 137-263 (292)
4 TIGR02189 GlrX-like_plant Glut 99.9 9.2E-24 2E-28 162.4 6.6 89 9-97 1-89 (99)
5 PHA03050 glutaredoxin; Provisi 99.9 4.2E-23 9.1E-28 161.5 8.6 90 5-94 2-94 (108)
6 PRK10824 glutaredoxin-4; Provi 99.9 5.1E-23 1.1E-27 163.0 8.7 92 3-97 2-98 (115)
7 KOG1752|consensus 99.9 1.2E-22 2.7E-27 158.2 7.9 94 4-97 2-95 (104)
8 TIGR00365 monothiol glutaredox 99.9 2.7E-22 5.9E-27 153.7 7.6 87 6-95 2-93 (97)
9 PF05181 XPA_C: XPA protein C- 99.9 1.7E-22 3.7E-27 137.9 2.8 47 109-155 2-52 (52)
10 cd03028 GRX_PICOT_like Glutare 99.8 6.7E-21 1.5E-25 143.6 7.2 83 9-94 1-88 (90)
11 KOG2802|consensus 99.8 3.3E-20 7.2E-25 170.5 7.0 124 85-228 91-214 (503)
12 cd03027 GRX_DEP Glutaredoxin ( 99.8 3.5E-19 7.6E-24 128.4 7.3 70 17-89 2-71 (73)
13 PTZ00062 glutaredoxin; Provisi 99.8 2.9E-19 6.4E-24 154.1 8.1 93 3-98 100-197 (204)
14 COG0695 GrxC Glutaredoxin and 99.8 2.5E-19 5.4E-24 133.0 6.4 76 16-92 1-76 (80)
15 PRK10638 glutaredoxin 3; Provi 99.8 3.4E-19 7.4E-24 131.7 6.9 78 16-96 2-79 (83)
16 TIGR02181 GRX_bact Glutaredoxi 99.8 4.3E-19 9.2E-24 129.3 6.4 76 18-96 1-76 (79)
17 TIGR02190 GlrX-dom Glutaredoxi 99.8 7.4E-19 1.6E-23 129.0 7.3 74 12-89 4-77 (79)
18 cd03418 GRX_GRXb_1_3_like Glut 99.8 1.1E-18 2.3E-23 125.2 6.9 72 17-91 1-73 (75)
19 cd03029 GRX_hybridPRX5 Glutare 99.8 1.4E-18 3E-23 124.8 7.1 69 17-89 2-70 (72)
20 cd03419 GRX_GRXh_1_2_like Glut 99.7 7.4E-18 1.6E-22 122.4 7.6 79 17-95 1-79 (82)
21 PRK11200 grxA glutaredoxin 1; 99.7 9.6E-18 2.1E-22 124.3 7.0 73 16-91 1-80 (85)
22 TIGR02180 GRX_euk Glutaredoxin 99.7 9.9E-18 2.1E-22 121.9 6.6 78 18-95 1-80 (84)
23 TIGR02183 GRXA Glutaredoxin, G 99.7 2.2E-17 4.9E-22 123.4 6.7 71 18-91 2-79 (86)
24 cd02066 GRX_family Glutaredoxi 99.7 5.7E-17 1.2E-21 112.9 7.2 70 17-89 1-70 (72)
25 PF00462 Glutaredoxin: Glutare 99.7 7.5E-17 1.6E-21 112.0 5.9 60 18-80 1-60 (60)
26 cd03031 GRX_GRX_like Glutaredo 99.7 5.8E-17 1.3E-21 133.4 6.2 79 17-98 1-89 (147)
27 COG0278 Glutaredoxin-related p 99.6 1.5E-15 3.3E-20 117.0 7.1 89 3-94 2-96 (105)
28 PRK12759 bifunctional gluaredo 99.6 1.3E-15 2.9E-20 143.3 6.8 73 16-88 2-79 (410)
29 TIGR02194 GlrX_NrdH Glutaredox 99.6 4.2E-15 9.1E-20 107.0 6.1 63 18-84 1-64 (72)
30 PRK10329 glutaredoxin-like pro 99.6 8.9E-15 1.9E-19 108.7 6.6 69 17-89 2-72 (81)
31 KOG0911|consensus 99.4 3.5E-13 7.5E-18 117.2 7.1 84 7-93 130-218 (227)
32 cd03030 GRX_SH3BGR Glutaredoxi 99.4 4E-13 8.8E-18 102.5 5.9 74 18-94 2-85 (92)
33 TIGR02196 GlrX_YruB Glutaredox 99.4 7.8E-13 1.7E-17 92.5 6.2 64 17-83 1-64 (74)
34 cd02976 NrdH NrdH-redoxin (Nrd 99.3 3.7E-12 8E-17 89.0 6.8 66 17-85 1-66 (73)
35 TIGR02200 GlrX_actino Glutared 99.2 2.7E-11 5.9E-16 86.2 6.8 63 17-82 1-65 (77)
36 cd02973 TRX_GRX_like Thioredox 99.2 2.3E-11 4.9E-16 85.4 4.2 58 17-81 2-64 (67)
37 cd00570 GST_N_family Glutathio 98.9 1.7E-09 3.7E-14 73.6 5.4 68 18-88 1-68 (71)
38 cd03041 GST_N_2GST_N GST_N fam 98.9 3.2E-09 7E-14 77.0 6.2 69 18-89 2-72 (77)
39 cd03040 GST_N_mPGES2 GST_N fam 98.8 1.6E-08 3.6E-13 72.6 6.4 67 17-89 1-71 (77)
40 cd03026 AhpF_NTD_C TRX-GRX-lik 98.8 7.8E-09 1.7E-13 78.0 4.8 70 5-81 3-77 (89)
41 cd03037 GST_N_GRX2 GST_N famil 98.8 1.3E-08 2.7E-13 72.2 5.6 66 19-89 2-68 (71)
42 KOG2824|consensus 98.7 1E-08 2.2E-13 91.8 4.6 80 15-97 130-219 (281)
43 cd03060 GST_N_Omega_like GST_N 98.7 5.7E-08 1.2E-12 69.1 6.7 66 19-88 2-68 (71)
44 cd03059 GST_N_SspA GST_N famil 98.6 5.2E-08 1.1E-12 68.9 4.6 68 18-89 1-68 (73)
45 cd03055 GST_N_Omega GST_N fami 98.6 1.1E-07 2.3E-12 71.0 6.1 70 15-88 16-86 (89)
46 cd03051 GST_N_GTT2_like GST_N 98.6 7.7E-08 1.7E-12 67.6 4.9 69 18-87 1-70 (74)
47 cd03036 ArsC_like Arsenate Red 98.6 6.7E-08 1.5E-12 75.5 4.9 50 18-70 1-50 (111)
48 TIGR00411 redox_disulf_1 small 98.5 1.3E-07 2.9E-12 68.0 4.8 55 17-78 2-62 (82)
49 TIGR00412 redox_disulf_2 small 98.5 1.5E-07 3.2E-12 68.6 4.7 55 17-80 2-60 (76)
50 cd03045 GST_N_Delta_Epsilon GS 98.5 1.6E-07 3.5E-12 66.5 4.6 69 18-87 1-69 (74)
51 cd03056 GST_N_4 GST_N family, 98.5 2.1E-07 4.5E-12 65.5 5.0 70 18-88 1-70 (73)
52 PF05768 DUF836: Glutaredoxin- 98.5 3.4E-07 7.4E-12 67.5 6.1 53 17-77 1-57 (81)
53 cd02977 ArsC_family Arsenate R 98.5 2E-07 4.4E-12 71.6 5.0 47 18-67 1-47 (105)
54 PF04908 SH3BGR: SH3-binding, 98.4 3.7E-07 8.1E-12 70.7 5.4 72 17-91 2-88 (99)
55 cd02975 PfPDO_like_N Pyrococcu 98.4 3.8E-07 8.3E-12 71.2 5.5 68 1-75 3-81 (113)
56 PHA02125 thioredoxin-like prot 98.4 4.9E-07 1.1E-11 65.4 4.8 53 18-78 2-54 (75)
57 PRK01655 spxA transcriptional 98.4 9E-07 2E-11 71.3 6.1 45 18-65 2-46 (131)
58 TIGR03140 AhpF alkyl hydropero 98.3 2E-07 4.4E-12 89.8 2.6 78 1-80 104-181 (515)
59 PF13417 GST_N_3: Glutathione 98.3 3.2E-07 7E-12 66.0 3.0 68 20-91 1-68 (75)
60 PRK15317 alkyl hydroperoxide r 98.3 2.8E-07 6E-12 88.9 2.7 73 1-80 103-180 (517)
61 TIGR01617 arsC_related transcr 98.2 2.4E-06 5.2E-11 67.1 5.9 35 18-52 1-35 (117)
62 TIGR03143 AhpF_homolog putativ 98.2 1.5E-06 3.2E-11 84.7 5.5 71 1-78 463-538 (555)
63 cd03052 GST_N_GDAP1 GST_N fami 98.2 2E-06 4.4E-11 62.0 4.7 70 18-88 1-70 (73)
64 cd03032 ArsC_Spx Arsenate Redu 98.2 3.1E-06 6.8E-11 66.3 5.9 35 18-52 2-36 (115)
65 TIGR02187 GlrX_arch Glutaredox 98.2 2.4E-06 5.3E-11 73.5 5.7 70 2-78 121-195 (215)
66 cd03053 GST_N_Phi GST_N family 98.2 3.9E-06 8.5E-11 59.8 5.3 71 18-89 2-72 (76)
67 PRK13344 spxA transcriptional 98.2 6.3E-06 1.4E-10 66.6 6.9 35 18-52 2-36 (132)
68 PRK12559 transcriptional regul 98.1 8E-06 1.7E-10 65.9 6.9 35 18-52 2-36 (131)
69 cd03035 ArsC_Yffb Arsenate Red 98.1 9.8E-06 2.1E-10 63.0 6.4 41 18-58 1-42 (105)
70 cd03058 GST_N_Tau GST_N family 98.1 7E-06 1.5E-10 58.5 4.9 68 18-89 1-69 (74)
71 cd03061 GST_N_CLIC GST_N famil 98.1 4.8E-06 1E-10 63.5 4.1 64 24-91 20-83 (91)
72 cd03054 GST_N_Metaxin GST_N fa 98.0 6.6E-06 1.4E-10 58.4 4.5 54 25-89 15-68 (72)
73 cd03049 GST_N_3 GST_N family, 98.0 8.7E-06 1.9E-10 57.7 5.0 67 18-88 1-70 (73)
74 PF13192 Thioredoxin_3: Thiore 98.0 6.9E-06 1.5E-10 59.7 4.1 56 17-81 2-63 (76)
75 cd03042 GST_N_Zeta GST_N famil 98.0 9.1E-06 2E-10 57.1 4.4 70 18-88 1-70 (73)
76 TIGR01295 PedC_BrcD bacterioci 98.0 3.8E-05 8.2E-10 61.0 7.9 74 7-81 14-104 (122)
77 cd03076 GST_N_Pi GST_N family, 97.9 2.4E-05 5.2E-10 56.0 4.8 69 17-89 1-69 (73)
78 cd03033 ArsC_15kD Arsenate Red 97.8 5.4E-05 1.2E-09 59.7 6.9 42 17-58 1-43 (113)
79 cd03039 GST_N_Sigma_like GST_N 97.8 2.2E-05 4.7E-10 55.6 3.9 69 18-89 1-69 (72)
80 PF13409 GST_N_2: Glutathione 97.8 1.1E-05 2.4E-10 57.5 2.4 65 25-89 1-66 (70)
81 cd03048 GST_N_Ure2p_like GST_N 97.8 3.9E-05 8.5E-10 55.5 4.8 71 18-90 2-75 (81)
82 cd02953 DsbDgamma DsbD gamma f 97.8 6.1E-05 1.3E-09 56.8 5.9 64 9-75 4-78 (104)
83 KOG3029|consensus 97.8 2.9E-05 6.3E-10 70.4 4.5 65 17-87 90-154 (370)
84 cd03038 GST_N_etherase_LigE GS 97.8 2.2E-05 4.8E-10 57.4 3.1 65 24-90 14-79 (84)
85 cd03050 GST_N_Theta GST_N fami 97.7 5.7E-05 1.2E-09 54.0 4.9 70 18-88 1-70 (76)
86 PRK09481 sspA stringent starva 97.7 5.2E-05 1.1E-09 64.5 5.4 71 16-90 9-79 (211)
87 cd03080 GST_N_Metaxin_like GST 97.7 6.2E-05 1.3E-09 54.0 5.0 61 18-89 2-69 (75)
88 TIGR02182 GRXB Glutaredoxin, G 97.7 5.6E-05 1.2E-09 64.5 5.2 71 19-94 1-72 (209)
89 cd02947 TRX_family TRX family; 97.7 8.6E-05 1.9E-09 52.5 5.2 56 16-78 12-74 (93)
90 PRK10387 glutaredoxin 2; Provi 97.7 8E-05 1.7E-09 62.5 5.8 72 18-94 1-73 (210)
91 cd03044 GST_N_EF1Bgamma GST_N 97.6 8.7E-05 1.9E-09 53.2 4.8 67 19-87 2-69 (75)
92 PHA02278 thioredoxin-like prot 97.6 0.00018 3.8E-09 55.7 6.5 71 7-80 5-85 (103)
93 cd01659 TRX_superfamily Thiore 97.6 0.00012 2.6E-09 47.0 4.3 57 18-78 1-62 (69)
94 cd02949 TRX_NTR TRX domain, no 97.6 0.00014 3E-09 54.5 5.0 57 17-80 16-80 (97)
95 TIGR02187 GlrX_arch Glutaredox 97.6 0.00012 2.7E-09 62.9 5.4 74 2-80 2-90 (215)
96 cd03047 GST_N_2 GST_N family, 97.5 0.00017 3.8E-09 51.1 4.8 68 19-87 2-69 (73)
97 COG4545 Glutaredoxin-related p 97.5 0.00019 4E-09 53.2 4.9 68 19-88 5-83 (85)
98 PTZ00051 thioredoxin; Provisio 97.5 0.00037 8.1E-09 51.5 6.5 68 6-80 8-84 (98)
99 cd02954 DIM1 Dim1 family; Dim1 97.5 0.00025 5.4E-09 56.2 5.7 58 17-81 17-82 (114)
100 COG1393 ArsC Arsenate reductas 97.5 0.00044 9.5E-09 55.0 6.9 36 17-52 2-37 (117)
101 cd02994 PDI_a_TMX PDIa family, 97.5 0.00035 7.5E-09 52.2 6.1 60 9-75 11-77 (101)
102 cd02989 Phd_like_TxnDC9 Phosdu 97.5 0.00036 7.7E-09 54.4 6.3 58 17-81 25-89 (113)
103 KOG0910|consensus 97.4 0.00018 3.9E-09 59.6 4.7 69 4-79 49-127 (150)
104 cd03057 GST_N_Beta GST_N famil 97.4 0.0002 4.3E-09 51.2 4.3 69 19-89 2-71 (77)
105 TIGR01616 nitro_assoc nitrogen 97.4 0.00052 1.1E-08 55.2 6.6 43 17-59 2-45 (126)
106 cd03034 ArsC_ArsC Arsenate Red 97.4 0.00054 1.2E-08 53.6 6.4 41 18-58 1-42 (112)
107 PRK10026 arsenate reductase; P 97.3 0.00066 1.4E-08 55.7 6.9 44 16-59 2-46 (141)
108 TIGR00014 arsC arsenate reduct 97.3 0.00059 1.3E-08 53.6 6.3 41 18-58 1-42 (114)
109 PF14595 Thioredoxin_9: Thiore 97.3 4.7E-05 1E-09 61.3 -0.0 70 2-75 29-103 (129)
110 PRK15113 glutathione S-transfe 97.3 0.00049 1.1E-08 58.6 5.6 75 16-91 4-80 (214)
111 cd03043 GST_N_1 GST_N family, 97.2 0.0007 1.5E-08 48.5 5.3 65 22-88 6-70 (73)
112 PRK10853 putative reductase; P 97.2 0.00095 2.1E-08 53.0 6.5 42 18-59 2-44 (118)
113 TIGR00862 O-ClC intracellular 97.2 0.00049 1.1E-08 60.8 5.3 64 24-91 17-80 (236)
114 PF00085 Thioredoxin: Thioredo 97.2 0.00087 1.9E-08 49.3 5.6 59 17-80 20-84 (103)
115 cd02948 TRX_NDPK TRX domain, T 97.2 0.0011 2.4E-08 50.2 6.2 67 7-79 8-83 (102)
116 PRK09381 trxA thioredoxin; Pro 97.2 0.00077 1.7E-08 51.1 5.0 59 17-80 24-88 (109)
117 cd02996 PDI_a_ERp44 PDIa famil 97.1 0.0013 2.8E-08 49.9 6.2 63 9-78 11-89 (108)
118 cd02959 ERp19 Endoplasmic reti 97.1 0.0013 2.8E-08 51.7 6.3 70 6-81 9-91 (117)
119 cd02985 TRX_CDSP32 TRX family, 97.1 0.0017 3.6E-08 49.4 6.7 60 17-80 18-84 (103)
120 TIGR01068 thioredoxin thioredo 97.1 0.0016 3.5E-08 47.5 6.3 59 16-79 16-80 (101)
121 cd02951 SoxW SoxW family; SoxW 97.1 0.0012 2.5E-08 51.5 5.5 70 8-77 5-93 (125)
122 PLN02473 glutathione S-transfe 97.1 0.00078 1.7E-08 56.9 4.7 74 17-91 2-75 (214)
123 cd02956 ybbN ybbN protein fami 97.0 0.0016 3.4E-08 48.1 5.6 58 17-79 15-78 (96)
124 cd03046 GST_N_GTT1_like GST_N 97.0 0.00086 1.9E-08 47.3 3.9 69 19-89 2-70 (76)
125 PF13098 Thioredoxin_2: Thiore 97.0 0.00076 1.7E-08 51.1 3.9 63 16-78 7-94 (112)
126 cd03003 PDI_a_ERdj5_N PDIa fam 97.0 0.0013 2.8E-08 49.3 4.9 63 9-78 11-83 (101)
127 cd02999 PDI_a_ERp44_like PDIa 97.0 0.0022 4.7E-08 48.8 6.0 55 17-75 21-78 (100)
128 cd02961 PDI_a_family Protein D 97.0 0.0027 5.7E-08 45.8 6.3 63 8-75 7-77 (101)
129 cd02963 TRX_DnaJ TRX domain, D 97.0 0.0021 4.6E-08 49.6 5.9 68 6-80 12-92 (111)
130 cd03004 PDI_a_ERdj5_C PDIa fam 96.9 0.0017 3.6E-08 48.7 5.1 54 17-77 22-83 (104)
131 PLN02378 glutathione S-transfe 96.9 0.001 2.2E-08 56.8 4.3 64 24-91 18-81 (213)
132 cd03006 PDI_a_EFP1_N PDIa fami 96.9 0.0025 5.3E-08 50.1 6.0 59 13-78 26-95 (113)
133 TIGR01262 maiA maleylacetoacet 96.8 0.00091 2E-08 56.1 3.2 73 20-92 2-74 (210)
134 cd03002 PDI_a_MPD1_like PDI fa 96.8 0.003 6.4E-08 47.5 5.7 54 17-75 21-80 (109)
135 cd02962 TMX2 TMX2 family; comp 96.8 0.0027 5.8E-08 52.5 5.8 57 18-81 51-122 (152)
136 cd02984 TRX_PICOT TRX domain, 96.8 0.0023 5E-08 47.0 4.9 59 17-80 17-81 (97)
137 TIGR01126 pdi_dom protein disu 96.8 0.0032 6.9E-08 46.2 5.3 54 17-75 16-75 (102)
138 PLN02817 glutathione dehydroge 96.8 0.0017 3.7E-08 58.1 4.5 65 23-91 70-134 (265)
139 cd03001 PDI_a_P5 PDIa family, 96.8 0.0059 1.3E-07 45.1 6.7 54 17-75 21-78 (103)
140 cd02957 Phd_like Phosducin (Ph 96.7 0.0016 3.5E-08 50.2 3.5 60 18-83 28-92 (113)
141 cd02965 HyaE HyaE family; HyaE 96.7 0.0022 4.8E-08 50.6 4.2 63 15-82 28-98 (111)
142 cd03005 PDI_a_ERp46 PDIa famil 96.6 0.0046 1E-07 45.6 5.4 59 15-78 17-84 (102)
143 PRK10996 thioredoxin 2; Provis 96.6 0.008 1.7E-07 48.4 6.8 69 7-80 43-119 (139)
144 cd02993 PDI_a_APS_reductase PD 96.5 0.0091 2E-07 45.6 6.5 54 16-74 23-83 (109)
145 cd02998 PDI_a_ERp38 PDIa famil 96.5 0.005 1.1E-07 45.4 4.9 55 17-75 21-81 (105)
146 PF03960 ArsC: ArsC family; I 96.5 0.0068 1.5E-07 46.9 5.7 45 21-66 1-46 (110)
147 PF13728 TraF: F plasmid trans 96.5 0.0075 1.6E-07 52.5 6.4 70 6-75 112-189 (215)
148 cd02987 Phd_like_Phd Phosducin 96.5 0.0066 1.4E-07 51.1 5.8 58 18-81 87-149 (175)
149 COG0625 Gst Glutathione S-tran 96.5 0.0042 9E-08 52.5 4.6 71 19-91 2-73 (211)
150 cd02955 SSP411 TRX domain, SSP 96.4 0.013 2.9E-07 46.8 7.2 73 9-82 8-96 (124)
151 PLN02395 glutathione S-transfe 96.4 0.0053 1.1E-07 51.7 5.0 73 17-91 2-74 (215)
152 cd02986 DLP Dim1 family, Dim1- 96.4 0.0058 1.3E-07 48.5 4.9 56 18-80 18-81 (114)
153 KOG0406|consensus 96.4 0.0086 1.9E-07 53.0 6.4 75 16-94 8-83 (231)
154 cd02952 TRP14_like Human TRX-r 96.4 0.005 1.1E-07 49.0 4.4 58 18-75 25-96 (119)
155 cd03000 PDI_a_TMX3 PDIa family 96.4 0.0049 1.1E-07 46.5 4.1 55 16-75 17-78 (104)
156 PRK10877 protein disulfide iso 96.4 0.0059 1.3E-07 53.6 5.2 68 17-84 110-218 (232)
157 cd02950 TxlA TRX-like protein 96.3 0.0079 1.7E-07 48.7 5.3 66 10-80 14-90 (142)
158 KOG1422|consensus 96.3 0.0077 1.7E-07 52.6 5.4 70 25-98 20-89 (221)
159 COG3118 Thioredoxin domain-con 96.2 0.0092 2E-07 54.6 5.8 74 6-86 34-116 (304)
160 cd02997 PDI_a_PDIR PDIa family 96.2 0.0085 1.8E-07 44.3 4.5 57 17-78 20-86 (104)
161 PRK10357 putative glutathione 96.2 0.0075 1.6E-07 50.4 4.5 67 19-89 2-69 (202)
162 cd03077 GST_N_Alpha GST_N fami 96.1 0.014 3.1E-07 42.3 5.3 67 18-88 2-70 (79)
163 PLN00410 U5 snRNP protein, DIM 96.1 0.011 2.3E-07 48.7 5.2 55 17-78 26-89 (142)
164 COG2999 GrxB Glutaredoxin 2 [P 96.1 0.0055 1.2E-07 52.6 3.4 68 19-91 2-70 (215)
165 PRK13972 GSH-dependent disulfi 96.1 0.011 2.5E-07 50.0 5.4 72 18-91 2-80 (215)
166 TIGR02740 TraF-like TraF-like 96.1 0.014 3E-07 52.5 6.2 69 7-75 159-235 (271)
167 cd02988 Phd_like_VIAF Phosduci 96.0 0.013 2.7E-07 50.2 5.3 68 6-81 90-166 (192)
168 PTZ00062 glutaredoxin; Provisi 95.9 0.01 2.2E-07 51.5 4.5 68 1-81 1-76 (204)
169 cd03020 DsbA_DsbC_DsbG DsbA fa 95.8 0.017 3.8E-07 48.7 5.2 31 16-46 79-111 (197)
170 cd02995 PDI_a_PDI_a'_C PDIa fa 95.8 0.017 3.6E-07 42.5 4.5 53 17-75 21-79 (104)
171 PTZ00443 Thioredoxin domain-co 95.7 0.016 3.4E-07 51.0 4.8 58 16-78 54-117 (224)
172 PRK11752 putative S-transferas 95.7 0.014 3.1E-07 51.8 4.5 78 12-91 39-126 (264)
173 PRK13728 conjugal transfer pro 95.7 0.024 5.1E-07 48.5 5.6 59 17-75 72-142 (181)
174 cd03065 PDI_b_Calsequestrin_N 95.7 0.015 3.2E-07 46.3 4.1 65 9-80 19-100 (120)
175 cd02972 DsbA_family DsbA famil 95.6 0.032 7E-07 39.7 5.2 64 18-81 1-96 (98)
176 cd02964 TryX_like_family Trypa 95.5 0.045 9.8E-07 43.0 6.2 21 17-37 20-40 (132)
177 cd02992 PDI_a_QSOX PDIa family 95.5 0.034 7.3E-07 43.2 5.4 64 9-75 11-84 (114)
178 TIGR02739 TraF type-F conjugat 95.5 0.025 5.4E-07 50.8 5.2 71 5-75 141-219 (256)
179 KOG4023|consensus 95.4 0.015 3.3E-07 45.2 3.2 74 16-89 2-86 (108)
180 KOG0907|consensus 95.3 0.013 2.8E-07 45.7 2.6 60 18-82 25-93 (106)
181 cd03010 TlpA_like_DsbE TlpA-li 95.2 0.054 1.2E-06 41.9 5.9 34 17-50 28-63 (127)
182 PRK13703 conjugal pilus assemb 95.2 0.03 6.5E-07 50.1 4.9 69 6-75 135-212 (248)
183 PF06764 DUF1223: Protein of u 95.0 0.01 2.2E-07 51.4 1.3 66 18-83 2-85 (202)
184 TIGR00385 dsbE periplasmic pro 94.9 0.05 1.1E-06 45.0 5.1 23 17-39 66-88 (173)
185 PF02798 GST_N: Glutathione S- 94.9 0.038 8.3E-07 39.7 3.8 68 17-87 2-71 (76)
186 PRK10542 glutathionine S-trans 94.8 0.041 8.9E-07 45.7 4.4 72 19-91 2-74 (201)
187 cd03009 TryX_like_TryX_NRX Try 94.8 0.1 2.2E-06 40.6 6.4 21 17-37 21-41 (131)
188 TIGR01130 ER_PDI_fam protein d 94.8 0.072 1.6E-06 49.5 6.3 67 8-79 10-87 (462)
189 PF13899 Thioredoxin_7: Thiore 94.8 0.053 1.2E-06 39.3 4.3 52 18-75 21-79 (82)
190 KOG0867|consensus 94.7 0.052 1.1E-06 47.3 4.8 78 17-95 2-79 (226)
191 PLN02309 5'-adenylylsulfate re 94.5 0.098 2.1E-06 50.6 6.8 53 17-75 368-428 (457)
192 cd03079 GST_N_Metaxin2 GST_N f 94.4 0.046 1E-06 40.0 3.3 56 24-89 15-70 (74)
193 KOG4244|consensus 94.4 0.055 1.2E-06 48.9 4.3 65 12-87 40-111 (281)
194 cd03078 GST_N_Metaxin1_like GS 94.2 0.059 1.3E-06 38.9 3.4 55 24-89 14-68 (73)
195 COG3634 AhpF Alkyl hydroperoxi 94.2 0.044 9.5E-07 51.9 3.3 75 3-82 105-182 (520)
196 cd03075 GST_N_Mu GST_N family, 93.9 0.12 2.6E-06 37.8 4.7 68 20-87 3-75 (82)
197 cd02982 PDI_b'_family Protein 93.9 0.077 1.7E-06 39.2 3.7 56 15-75 13-74 (103)
198 TIGR00424 APS_reduc 5'-adenyly 93.9 0.12 2.6E-06 50.1 6.0 57 17-78 374-439 (463)
199 PTZ00102 disulphide isomerase; 93.7 0.1 2.2E-06 49.2 5.1 65 9-78 42-117 (477)
200 PRK00293 dipZ thiol:disulfide 93.5 0.25 5.5E-06 48.9 7.5 59 18-79 478-547 (571)
201 PTZ00057 glutathione s-transfe 93.3 0.14 3.1E-06 43.1 4.8 71 17-89 4-78 (205)
202 cd03011 TlpA_like_ScsD_MtbDsbE 93.2 0.088 1.9E-06 40.2 3.1 34 15-48 21-54 (123)
203 TIGR02738 TrbB type-F conjugat 93.0 0.24 5.2E-06 40.9 5.5 38 14-51 50-91 (153)
204 PF13905 Thioredoxin_8: Thiore 92.7 0.43 9.4E-06 34.7 6.1 43 17-59 4-52 (95)
205 COG5494 Predicted thioredoxin/ 92.7 0.12 2.6E-06 45.5 3.5 68 15-89 10-83 (265)
206 KOG0868|consensus 92.5 0.11 2.4E-06 44.8 2.9 76 17-94 5-82 (217)
207 cd02966 TlpA_like_family TlpA- 92.4 0.24 5.2E-06 35.8 4.3 25 14-38 19-43 (116)
208 cd03007 PDI_a_ERp29_N PDIa fam 92.3 0.87 1.9E-05 36.1 7.7 68 9-78 11-91 (116)
209 PRK03147 thiol-disulfide oxido 92.0 0.44 9.6E-06 38.5 5.9 23 15-37 62-84 (173)
210 PTZ00102 disulphide isomerase; 91.4 0.13 2.8E-06 48.5 2.5 52 17-75 378-437 (477)
211 cd02958 UAS UAS family; UAS is 91.2 0.96 2.1E-05 34.6 6.8 70 4-76 5-84 (114)
212 KOG2501|consensus 91.2 0.55 1.2E-05 39.4 5.6 54 9-62 27-88 (157)
213 KOG3425|consensus 91.1 0.34 7.3E-06 39.1 4.1 49 3-51 13-76 (128)
214 cd02967 mauD Methylamine utili 90.9 0.96 2.1E-05 33.9 6.4 57 16-74 23-83 (114)
215 COG2143 Thioredoxin-related pr 90.5 0.35 7.6E-06 40.9 3.9 62 17-78 45-125 (182)
216 COG3019 Predicted metal-bindin 90.2 0.3 6.4E-06 40.4 3.1 79 14-99 24-114 (149)
217 TIGR02661 MauD methylamine deh 90.2 0.53 1.1E-05 39.7 4.8 31 17-47 77-111 (189)
218 KOG0908|consensus 89.7 0.29 6.2E-06 44.2 2.9 67 7-80 11-87 (288)
219 PF06953 ArsD: Arsenical resis 89.7 0.32 6.9E-06 39.1 2.9 73 16-89 2-94 (123)
220 KOG0190|consensus 89.4 0.64 1.4E-05 45.5 5.3 68 7-79 33-111 (493)
221 PF07315 DUF1462: Protein of u 89.3 0.42 9.1E-06 36.6 3.1 69 19-87 1-86 (93)
222 cd03008 TryX_like_RdCVF Trypar 88.5 1.4 3E-05 36.2 5.9 22 17-38 28-49 (146)
223 TIGR03143 AhpF_homolog putativ 88.4 1 2.2E-05 44.1 6.0 67 2-75 350-425 (555)
224 PRK15412 thiol:disulfide inter 88.3 1.6 3.5E-05 36.4 6.4 56 17-76 71-129 (185)
225 PF11009 DUF2847: Protein of u 88.2 2.1 4.6E-05 33.5 6.5 71 7-80 8-91 (105)
226 PHA03075 glutaredoxin-like pro 87.8 0.73 1.6E-05 36.9 3.7 35 16-50 3-37 (123)
227 KOG1695|consensus 87.8 1 2.2E-05 39.2 5.0 70 16-89 2-71 (206)
228 COG5429 Uncharacterized secret 87.0 0.9 1.9E-05 40.6 4.2 61 18-78 45-122 (261)
229 smart00594 UAS UAS domain. 87.0 2.8 6.1E-05 32.7 6.7 69 4-75 15-92 (122)
230 cd02960 AGR Anterior Gradient 86.7 1.2 2.6E-05 36.1 4.5 31 6-36 13-45 (130)
231 TIGR01130 ER_PDI_fam protein d 86.4 0.63 1.4E-05 43.2 3.2 50 17-75 367-425 (462)
232 PRK11657 dsbG disulfide isomer 86.3 0.62 1.3E-05 41.4 2.9 31 17-47 120-154 (251)
233 cd02970 PRX_like2 Peroxiredoxi 83.3 4.6 9.9E-05 31.3 6.4 54 17-75 26-87 (149)
234 cd03023 DsbA_Com1_like DsbA fa 81.9 0.8 1.7E-05 35.6 1.5 24 15-38 6-29 (154)
235 PF10568 Tom37: Outer mitochon 81.5 2.2 4.8E-05 30.8 3.6 53 26-89 14-70 (72)
236 PF08534 Redoxin: Redoxin; In 81.0 4.7 0.0001 31.5 5.7 52 18-74 32-91 (146)
237 PF06110 DUF953: Eukaryotic pr 81.0 1 2.3E-05 35.9 1.9 49 23-74 35-94 (119)
238 KOG4277|consensus 80.0 1.1 2.3E-05 41.8 1.8 70 18-89 47-127 (468)
239 COG4837 Uncharacterized protei 79.6 1.4 3.1E-05 34.1 2.2 73 14-87 3-93 (106)
240 cd02968 SCO SCO (an acronym fo 79.6 4.6 0.0001 31.3 5.2 22 16-37 24-46 (142)
241 PTZ00056 glutathione peroxidas 77.8 5.6 0.00012 33.9 5.5 16 17-32 42-57 (199)
242 PF04134 DUF393: Protein of un 77.0 2.1 4.5E-05 32.6 2.4 64 21-89 2-73 (114)
243 PTZ00256 glutathione peroxidas 76.9 8.5 0.00019 32.0 6.3 54 19-73 46-111 (183)
244 PLN02412 probable glutathione 76.3 7.4 0.00016 32.0 5.7 56 18-74 33-100 (167)
245 KOG0191|consensus 76.1 2.7 5.9E-05 39.1 3.4 57 14-75 47-107 (383)
246 TIGR03759 conj_TIGR03759 integ 76.0 6.1 0.00013 34.4 5.2 63 14-80 108-170 (200)
247 KOG0912|consensus 73.8 3.7 7.9E-05 38.3 3.5 68 9-81 6-86 (375)
248 COG0526 TrxA Thiol-disulfide i 73.7 3.3 7.2E-05 29.0 2.6 18 22-39 40-57 (127)
249 TIGR01689 EcbF-BcbF capsule bi 73.7 9.8 0.00021 30.5 5.6 48 3-50 27-87 (126)
250 PRK14018 trifunctional thiored 73.0 4 8.7E-05 40.3 3.8 23 17-39 59-81 (521)
251 PLN02399 phospholipid hydroper 72.5 11 0.00023 33.4 6.1 57 16-73 101-169 (236)
252 PF09822 ABC_transp_aux: ABC-t 72.2 11 0.00024 33.1 6.2 70 1-73 12-92 (271)
253 PF00578 AhpC-TSA: AhpC/TSA fa 71.9 9.1 0.0002 28.7 4.9 56 17-75 28-89 (124)
254 cd03019 DsbA_DsbA DsbA family, 71.5 3.6 7.7E-05 33.1 2.6 26 14-39 15-40 (178)
255 cd00340 GSH_Peroxidase Glutath 71.4 8.5 0.00018 30.8 4.8 21 17-38 25-45 (152)
256 PF13462 Thioredoxin_4: Thiore 71.3 3.8 8.1E-05 32.4 2.7 34 15-48 13-54 (162)
257 PF03190 Thioredox_DsbH: Prote 70.8 7 0.00015 32.9 4.3 60 20-80 43-116 (163)
258 cd03018 PRX_AhpE_like Peroxire 70.0 20 0.00043 27.9 6.6 53 18-73 32-90 (149)
259 cd02971 PRX_family Peroxiredox 68.8 13 0.00029 28.5 5.3 57 14-74 21-86 (140)
260 PF13462 Thioredoxin_4: Thiore 68.6 3.3 7.1E-05 32.7 1.8 25 63-87 130-154 (162)
261 KOG4420|consensus 68.5 1.9 4.1E-05 39.3 0.4 74 17-91 26-99 (325)
262 cd03012 TlpA_like_DipZ_like Tl 68.5 4.9 0.00011 31.0 2.7 23 16-38 25-47 (126)
263 PF15643 Tox-PL-2: Papain fold 67.8 14 0.00031 28.7 5.1 69 4-81 4-73 (100)
264 cd03017 PRX_BCP Peroxiredoxin 65.9 12 0.00026 28.7 4.5 54 15-73 23-85 (140)
265 TIGR02540 gpx7 putative glutat 65.5 21 0.00045 28.5 5.9 17 18-34 26-42 (153)
266 PLN02919 haloacid dehalogenase 64.2 14 0.00031 39.4 5.9 22 17-38 423-444 (1057)
267 TIGR01162 purE phosphoribosyla 62.4 27 0.00058 29.3 6.1 36 18-53 3-38 (156)
268 cd03022 DsbA_HCCA_Iso DsbA fam 61.9 4.5 9.9E-05 33.0 1.5 24 64-87 162-185 (192)
269 cd02969 PRX_like1 Peroxiredoxi 61.3 30 0.00064 28.0 6.2 22 16-37 27-48 (171)
270 cd03015 PRX_Typ2cys Peroxiredo 60.9 12 0.00025 30.6 3.8 23 15-37 29-53 (173)
271 KOG0190|consensus 58.7 4.5 9.7E-05 39.7 1.0 26 18-43 388-413 (493)
272 TIGR03137 AhpC peroxiredoxin. 57.2 15 0.00033 30.6 3.9 37 14-50 30-75 (187)
273 PF11287 DUF3088: Protein of u 56.8 21 0.00046 28.4 4.3 74 26-124 24-104 (112)
274 PRK11509 hydrogenase-1 operon 56.1 22 0.00048 28.8 4.5 65 11-82 29-106 (132)
275 TIGR01626 ytfJ_HI0045 conserve 55.2 31 0.00068 29.4 5.5 37 15-51 60-105 (184)
276 PF10865 DUF2703: Domain of un 54.3 18 0.0004 28.9 3.7 48 25-80 14-72 (120)
277 cd03023 DsbA_Com1_like DsbA fa 54.2 6.3 0.00014 30.5 1.0 25 63-87 123-147 (154)
278 KOG0191|consensus 50.9 20 0.00044 33.3 4.0 55 16-75 164-224 (383)
279 COG4232 Thiol:disulfide interc 50.9 27 0.00059 35.0 5.0 66 7-75 463-540 (569)
280 PRK15000 peroxidase; Provision 50.7 27 0.00059 29.7 4.5 23 14-36 33-57 (200)
281 cd03016 PRX_1cys Peroxiredoxin 50.5 18 0.0004 30.6 3.4 35 16-50 26-69 (203)
282 cd03014 PRX_Atyp2cys Peroxired 50.2 45 0.00097 25.8 5.4 56 15-72 26-86 (143)
283 PRK09437 bcp thioredoxin-depen 50.0 28 0.00061 27.5 4.2 55 14-73 29-92 (154)
284 PF01323 DSBA: DSBA-like thior 49.1 17 0.00036 29.5 2.8 35 17-51 1-40 (193)
285 COG2761 FrnE Predicted dithiol 48.9 17 0.00038 32.1 3.0 24 16-39 6-29 (225)
286 PF08412 Ion_trans_N: Ion tran 48.4 20 0.00044 26.5 2.9 24 152-175 7-30 (77)
287 PF02114 Phosducin: Phosducin; 48.1 13 0.00029 33.5 2.2 64 18-87 150-218 (265)
288 cd02974 AhpF_NTD_N Alkyl hydro 46.8 39 0.00085 25.6 4.3 38 1-39 2-43 (94)
289 PRK00522 tpx lipid hydroperoxi 45.8 64 0.0014 26.3 5.8 48 17-67 47-99 (167)
290 COG0041 PurE Phosphoribosylcar 44.1 79 0.0017 26.7 6.0 36 18-53 7-42 (162)
291 cd03008 TryX_like_RdCVF Trypar 43.0 1.3E+02 0.0028 24.5 7.2 59 17-80 65-126 (146)
292 cd05295 MDH_like Malate dehydr 42.8 40 0.00087 32.8 4.7 67 23-91 1-82 (452)
293 PRK13189 peroxiredoxin; Provis 41.7 32 0.0007 29.8 3.6 37 14-50 34-79 (222)
294 PRK13599 putative peroxiredoxi 40.9 31 0.00066 29.9 3.3 37 14-50 27-72 (215)
295 PRK13190 putative peroxiredoxi 39.6 33 0.00072 29.1 3.3 36 15-50 27-71 (202)
296 PTZ00137 2-Cys peroxiredoxin; 37.9 54 0.0012 29.5 4.5 41 10-50 93-142 (261)
297 cd03025 DsbA_FrnE_like DsbA fa 37.7 22 0.00047 29.0 1.8 22 17-38 2-23 (193)
298 TIGR03865 PQQ_CXXCW PQQ-depend 37.1 79 0.0017 26.0 5.1 36 14-50 115-150 (162)
299 PRK10128 2-keto-3-deoxy-L-rham 36.5 1.1E+02 0.0023 27.6 6.2 96 1-97 1-97 (267)
300 cd03013 PRX5_like Peroxiredoxi 36.2 1.1E+02 0.0024 24.7 5.8 56 9-67 23-88 (155)
301 PRK10382 alkyl hydroperoxide r 34.9 43 0.00093 28.3 3.2 18 16-33 32-51 (187)
302 PF10087 DUF2325: Uncharacteri 34.8 1.8E+02 0.0038 21.5 6.3 53 7-62 40-94 (97)
303 PRK15317 alkyl hydroperoxide r 34.7 54 0.0012 31.7 4.3 38 1-39 2-43 (517)
304 PF00282 Pyridoxal_deC: Pyrido 33.5 62 0.0013 30.2 4.3 73 15-89 139-216 (373)
305 PRK10954 periplasmic protein d 32.9 28 0.00061 29.5 1.8 20 63-82 161-180 (207)
306 PF01323 DSBA: DSBA-like thior 32.8 23 0.00049 28.7 1.2 53 32-86 126-185 (193)
307 PRK13191 putative peroxiredoxi 32.8 51 0.0011 28.5 3.4 37 14-50 32-77 (215)
308 PRK04195 replication factor C 32.7 1.8E+02 0.0038 28.1 7.4 47 3-49 20-73 (482)
309 PF09413 DUF2007: Domain of un 32.5 42 0.00091 23.0 2.3 53 18-78 1-53 (67)
310 cd03019 DsbA_DsbA DsbA family, 32.4 26 0.00056 28.0 1.4 20 63-82 137-156 (178)
311 PF12689 Acid_PPase: Acid Phos 32.4 79 0.0017 26.5 4.4 91 4-97 49-151 (169)
312 cd03012 TlpA_like_DipZ_like Tl 32.2 2.2E+02 0.0048 21.5 6.9 61 7-75 46-111 (126)
313 cd01520 RHOD_YbbB Member of th 31.8 96 0.0021 24.0 4.6 38 12-51 83-120 (128)
314 PRK10606 btuE putative glutath 31.7 1.4E+02 0.0031 25.1 5.9 16 16-31 27-42 (183)
315 cd03022 DsbA_HCCA_Iso DsbA fam 31.4 41 0.00089 27.2 2.5 31 18-48 1-35 (192)
316 PF07739 TipAS: TipAS antibiot 30.8 44 0.00095 25.1 2.4 47 156-203 3-50 (118)
317 KOG4598|consensus 30.5 39 0.00084 35.1 2.5 51 6-66 1045-1096(1203)
318 PF06627 DUF1153: Protein of u 30.0 14 0.0003 28.2 -0.5 23 109-131 46-68 (90)
319 PF00763 THF_DHG_CYH: Tetrahyd 28.9 1.9E+02 0.0041 22.4 5.8 66 4-69 15-87 (117)
320 PRK10558 alpha-dehydro-beta-de 28.5 1.5E+02 0.0033 26.3 5.8 75 3-78 4-79 (256)
321 cd01427 HAD_like Haloacid deha 28.4 2.3E+02 0.0049 20.4 6.9 37 2-41 26-63 (139)
322 PRK15412 thiol:disulfide inter 28.2 1.2E+02 0.0026 25.1 4.8 53 17-76 97-150 (185)
323 PF12958 DUF3847: Protein of u 28.2 1.5E+02 0.0032 22.5 4.7 34 165-198 2-35 (86)
324 cd06387 PBP1_iGluR_AMPA_GluR3 27.9 1.2E+02 0.0026 28.3 5.2 84 4-88 51-145 (372)
325 TIGR03140 AhpF alkyl hydropero 27.1 87 0.0019 30.3 4.3 38 1-39 2-43 (515)
326 PF06053 DUF929: Domain of unk 26.9 44 0.00095 30.0 2.0 25 17-41 61-89 (249)
327 COG1651 DsbG Protein-disulfide 26.6 34 0.00073 29.3 1.2 27 62-88 208-234 (244)
328 PF00578 AhpC-TSA: AhpC/TSA fa 26.5 2.6E+02 0.0056 20.5 6.0 58 9-75 51-114 (124)
329 TIGR03521 GldG gliding-associa 26.3 1.9E+02 0.0041 28.6 6.5 52 1-52 35-96 (552)
330 PF05582 Peptidase_U57: YabG p 25.9 1.9E+02 0.0041 26.7 5.9 16 211-226 97-112 (287)
331 TIGR00635 ruvB Holliday juncti 25.7 2.8E+02 0.0061 24.3 7.0 59 16-77 31-89 (305)
332 PTZ00253 tryparedoxin peroxida 24.9 61 0.0013 27.2 2.5 36 16-51 37-81 (199)
333 KOG1672|consensus 24.7 67 0.0015 28.2 2.7 79 5-88 74-161 (211)
334 KOG1731|consensus 24.5 27 0.00058 35.1 0.2 66 17-82 60-138 (606)
335 COG3011 Predicted thiol-disulf 24.4 2.2E+02 0.0047 23.4 5.5 69 16-89 8-82 (137)
336 PF13344 Hydrolase_6: Haloacid 24.1 1.8E+02 0.004 21.7 4.8 60 3-64 17-77 (101)
337 cd03024 DsbA_FrnE DsbA family, 23.9 58 0.0013 26.6 2.1 20 18-37 1-20 (201)
338 COG1651 DsbG Protein-disulfide 23.8 77 0.0017 27.1 2.9 24 15-38 85-108 (244)
339 PRK10954 periplasmic protein d 23.5 50 0.0011 28.0 1.7 20 15-34 38-57 (207)
340 KOG0913|consensus 23.1 30 0.00066 31.0 0.3 42 11-52 36-84 (248)
341 PF03227 GILT: Gamma interfero 22.9 58 0.0013 24.9 1.8 16 17-32 2-17 (108)
342 PF07728 AAA_5: AAA domain (dy 22.3 1.6E+02 0.0034 22.5 4.2 37 17-53 1-37 (139)
343 TIGR01533 lipo_e_P4 5'-nucleot 22.0 4.2E+02 0.0092 23.8 7.4 77 3-84 121-202 (266)
344 COG5642 Uncharacterized conser 21.9 71 0.0015 26.3 2.1 30 139-168 77-106 (149)
345 COG2179 Predicted hydrolase of 21.8 2.6E+02 0.0056 24.0 5.6 72 2-79 48-120 (175)
346 cd03021 DsbA_GSTK DsbA family, 21.5 1.1E+02 0.0024 25.7 3.4 32 17-48 2-37 (209)
347 cd01444 GlpE_ST GlpE sulfurtra 21.3 2.4E+02 0.0052 19.8 4.8 35 7-42 48-82 (96)
348 cd06388 PBP1_iGluR_AMPA_GluR4 21.3 2.4E+02 0.0053 26.0 5.9 84 4-88 51-145 (371)
349 cd04911 ACT_AKiii-YclM-BS_1 AC 21.1 1.1E+02 0.0024 22.5 2.8 26 25-50 14-39 (76)
350 TIGR03190 benz_CoA_bzdN benzoy 21.0 2.5E+02 0.0053 26.3 5.9 46 7-52 303-355 (377)
351 PRK10670 hypothetical protein; 20.6 1.7E+02 0.0037 23.9 4.3 45 31-75 3-50 (159)
352 COG0283 Cmk Cytidylate kinase 20.2 1.2E+02 0.0025 27.0 3.3 34 145-178 138-180 (222)
353 PF02224 Cytidylate_kin: Cytid 20.0 1.8E+02 0.0039 24.3 4.3 19 145-163 80-98 (157)
No 1
>TIGR00598 rad14 DNA repair protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.2e-38 Score=265.79 Aligned_cols=99 Identities=28% Similarity=0.508 Sum_probs=96.2
Q ss_pred ccccccchhhhhhhccCCCCCccc----cccccccCCCC-CCCCceeeeHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHH
Q psy1894 108 TERNFITPNRAMSDFLLKQSDLEG----LKVIKRRSPYE-NEPPISVYWRKDVEAKAIQVWGSKERLLQERLKNELERKY 182 (228)
Q Consensus 108 ~~~~lit~t~a~~~y~l~~~dl~~----l~~~~~~nP~~-~~~~m~lyl~~~ve~~a~~~wgs~e~l~~e~~~r~~~~~~ 182 (228)
.+++|||+|+|++||||+|+||++ |++|.++|||+ +|++|+|||++|||++|++||||+|+|++|+++|++++++
T Consensus 30 ek~~liTkTeak~dYlL~d~dL~~~e~~L~~i~k~NPh~~~~~~MkLYlr~qVe~~A~~~wGS~E~L~~E~e~Re~~k~~ 109 (172)
T TIGR00598 30 DKYKLLTKTEAKEEYLLKDCDLDKREPLLRRIVKKNPHNPRWGDMKLYLKLQVEKRALEVWGSEEALDEEKERREESKEE 109 (172)
T ss_pred cccccccHHHHHHHhcCChhhhhcchhhchhcccCCCCCCCcccceeehHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 356999999999999999999999 99999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhcccchhh
Q psy1894 183 QQQHIFTMKRKLRDYRREQGSLADQK 208 (228)
Q Consensus 183 ~~~~~~~~~~~lk~lr~~~~~~~~~~ 208 (228)
++|++|+ ++||+||+++|++.|++
T Consensus 110 ~kekkf~--kklkelR~~~R~~~y~~ 133 (172)
T TIGR00598 110 MKEKKFE--KKLKELRRAVRSSEYTN 133 (172)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHhhc
Confidence 9999999 99999999999999975
No 2
>KOG4017|consensus
Probab=100.00 E-value=2.1e-37 Score=269.20 Aligned_cols=102 Identities=24% Similarity=0.486 Sum_probs=98.2
Q ss_pred ccccccchhhhhhhccCCCCCccc---cccccccCCCC-CCCCceeeeHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHH
Q psy1894 108 TERNFITPNRAMSDFLLKQSDLEG---LKVIKRRSPYE-NEPPISVYWRKDVEAKAIQVWGSKERLLQERLKNELERKYQ 183 (228)
Q Consensus 108 ~~~~lit~t~a~~~y~l~~~dl~~---l~~~~~~nP~~-~~~~m~lyl~~~ve~~a~~~wgs~e~l~~e~~~r~~~~~~~ 183 (228)
.+++|||+|+|+++||||||||++ |++|.|+|||+ +|++|+|||++|||++|++||||+|+|++++++|++.++.+
T Consensus 135 ekykLlTkTEcK~eYLLtD~eL~~re~l~~l~k~NPH~~~wg~MkLYL~~qVe~falekWGS~E~Le~~~e~Re~~ke~r 214 (274)
T KOG4017|consen 135 EKYKLLTKTECKSEYLLTDCELDDRELLRRLQKKNPHNGTWGDMKLYLRCQVEQFALEKWGSEEELEREKERREEMKEER 214 (274)
T ss_pred hhhheeehhhhhhhhhccCccccchhhhHHhhcCCCCCCchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 345999999999999999999998 99999999998 99999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhcccchhhhhh
Q psy1894 184 QQHIFTMKRKLRDYRREQGSLADQKMAE 211 (228)
Q Consensus 184 ~~~~~~~~~~lk~lr~~~~~~~~~~~~~ 211 (228)
++|+|+ |+||+||+.||+|.|.+++.
T Consensus 215 kekKfe--KKiKeLR~~tRts~~~r~~~ 240 (274)
T KOG4017|consen 215 KEKKFE--KKIKELRRKTRTSMYKRSSE 240 (274)
T ss_pred HHHHHH--HHHHHHHHHHHhhhhhhccc
Confidence 999999 99999999999999998764
No 3
>COG5145 RAD14 DNA excision repair protein [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.2e-32 Score=237.22 Aligned_cols=122 Identities=21% Similarity=0.389 Sum_probs=111.1
Q ss_pred ccCcc-ccccCCcCcccccccchhhhhhhccCCCCCccc---cccccccCCCC-CCCCceeeeHHHHHHHHHHHhCCHHH
Q psy1894 94 VAKPR-IRVDLSVSSTERNFITPNRAMSDFLLKQSDLEG---LKVIKRRSPYE-NEPPISVYWRKDVEAKAIQVWGSKER 168 (228)
Q Consensus 94 v~k~~-~~~~~~~~~~~~~lit~t~a~~~y~l~~~dl~~---l~~~~~~nP~~-~~~~m~lyl~~~ve~~a~~~wgs~e~ 168 (228)
+..+| |+-.|+.+| +|+|+|+|+.||||||++|.+ |+++.++|||. +|+.|+||||+|||++|+.+|||.|+
T Consensus 137 ~~VC~~Cr~~~pdky---~llTKTeCk~dYlLTdpEL~dqelf~rL~kpNPH~gtws~M~Lylr~eVE~FA~kKWGs~E~ 213 (292)
T COG5145 137 ISVCRSCRHSMPDKY---KLLTKTECKSDYLLTDPELKDQELFRRLQKPNPHKGTWSKMHLYLREEVEQFAIKKWGSLEE 213 (292)
T ss_pred chhHHhhhhhcchhh---hhhhhhhhhhhhhcCChhhcchHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHhcccHHH
Confidence 33344 678899988 999999999999999999999 99999999998 99999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhhhhccccCCCCceeee
Q psy1894 169 LLQERLKNELERKYQQQHIFTMKRKLRDYRREQGSLADQKMAEKAGLFGLLYPISML 225 (228)
Q Consensus 169 l~~e~~~r~~~~~~~~~~~~~~~~~lk~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (228)
|++|++||+..++.+++|+|+ ++|++||+.||.+-|++++-+. ..+|||+
T Consensus 214 ld~e~qrRe~~k~~rkekK~e--kkikelR~kTrt~~ysrm~vRe-----k~kHvH~ 263 (292)
T COG5145 214 LDREKQRREKMKDDRKEKKLE--KKIKELRRKTRTSNYSRMDVRE-----KEKHVHV 263 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhccccchhhhh-----hhcceee
Confidence 999999999999999999999 9999999999999999875443 3556665
No 4
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.89 E-value=9.2e-24 Score=162.44 Aligned_cols=89 Identities=20% Similarity=0.402 Sum_probs=81.3
Q ss_pred HHHHhcCCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhc
Q psy1894 9 VQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILE 88 (228)
Q Consensus 9 l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~ 88 (228)
++++|++++|+||++++||||.+|+++|+++|++|+++|||.++++.++++++.+.+|+.+||+|||||++|||+++|.+
T Consensus 1 ~~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 1 VRRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred ChhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 36789999999999999999999999999999999999999988777788889999999999999999999999999999
Q ss_pred cccccccCc
Q psy1894 89 IPVEAVAKP 97 (228)
Q Consensus 89 ~~v~~v~k~ 97 (228)
+...+.+.+
T Consensus 81 l~~~G~L~~ 89 (99)
T TIGR02189 81 LHISGSLVP 89 (99)
T ss_pred HHHcCCHHH
Confidence 977665443
No 5
>PHA03050 glutaredoxin; Provisional
Probab=99.89 E-value=4.2e-23 Score=161.51 Aligned_cols=90 Identities=27% Similarity=0.441 Sum_probs=82.4
Q ss_pred HHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHHcCC---CCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCccc
Q psy1894 5 SKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKV---TPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPK 81 (228)
Q Consensus 5 ~~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~gI---~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IG 81 (228)
++++++++|++++|+||+++|||||.+|+++|+++|+ +|+.++|+...++.+++++|.+.+|+.+||+|||||++||
T Consensus 2 ~~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iG 81 (108)
T PHA03050 2 AEEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIG 81 (108)
T ss_pred hHHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEe
Confidence 4689999999999999999999999999999999999 7999999985555788999999999999999999999999
Q ss_pred chhhhhccccccc
Q psy1894 82 AEKKILEIPVEAV 94 (228)
Q Consensus 82 G~d~L~~~~v~~v 94 (228)
|+++|.++...+-
T Consensus 82 G~ddl~~l~~~g~ 94 (108)
T PHA03050 82 GYSDLLEIDNMDA 94 (108)
T ss_pred ChHHHHHHHHcCC
Confidence 9999999865543
No 6
>PRK10824 glutaredoxin-4; Provisional
Probab=99.89 E-value=5.1e-23 Score=162.97 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=83.9
Q ss_pred hhHHHHHHHHhcCCCEEEEEcC-----CChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCC
Q psy1894 3 PASKQFVQDLIASEKILIFSKS-----YCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLE 77 (228)
Q Consensus 3 ~~~~~~l~~ii~~~~VvIYtk~-----~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~G 77 (228)
+++.++|+++|++++|+||+++ +||||.+|+++|+++|++|.++||+.+ ++++++|.+++|++|||||||||
T Consensus 2 ~~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d---~~~~~~l~~~sg~~TVPQIFI~G 78 (115)
T PRK10824 2 STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN---PDIRAELPKYANWPTFPQLWVDG 78 (115)
T ss_pred chHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC---HHHHHHHHHHhCCCCCCeEEECC
Confidence 4578999999999999999995 999999999999999999999999876 57889999999999999999999
Q ss_pred CcccchhhhhccccccccCc
Q psy1894 78 EKPKAEKKILEIPVEAVAKP 97 (228)
Q Consensus 78 e~IGG~d~L~~~~v~~v~k~ 97 (228)
++|||+|++.++...+.+.+
T Consensus 79 ~~IGG~ddl~~l~~~G~L~~ 98 (115)
T PRK10824 79 ELVGGCDIVIEMYQRGELQQ 98 (115)
T ss_pred EEEcChHHHHHHHHCCCHHH
Confidence 99999999999876655443
No 7
>KOG1752|consensus
Probab=99.88 E-value=1.2e-22 Score=158.19 Aligned_cols=94 Identities=34% Similarity=0.566 Sum_probs=87.8
Q ss_pred hHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccch
Q psy1894 4 ASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAE 83 (228)
Q Consensus 4 ~~~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~ 83 (228)
.+.++++.++.+++|+||++++||||++++.+|...|+++..+++|.++++.+++++|.+.+|+++||.|||+|++|||+
T Consensus 2 ~~~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~ 81 (104)
T KOG1752|consen 2 AAEAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGA 81 (104)
T ss_pred cHHHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccccCc
Q psy1894 84 KKILEIPVEAVAKP 97 (228)
Q Consensus 84 d~L~~~~v~~v~k~ 97 (228)
++|.++...+.+.+
T Consensus 82 ~dl~~lh~~G~L~~ 95 (104)
T KOG1752|consen 82 SDLMALHKSGELVP 95 (104)
T ss_pred HHHHHHHHcCCHHH
Confidence 99999977665543
No 8
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.87 E-value=2.7e-22 Score=153.70 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=80.0
Q ss_pred HHHHHHHhcCCCEEEEEc-----CCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcc
Q psy1894 6 KQFVQDLIASEKILIFSK-----SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKP 80 (228)
Q Consensus 6 ~~~l~~ii~~~~VvIYtk-----~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~I 80 (228)
.++|.+++++++|+||++ ++||||.+|+.+|+++||+|+++||+.+ ++.+++|.+++|+.+||+|||||++|
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~---~~~~~~l~~~tg~~tvP~vfi~g~~i 78 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED---PEIRQGIKEYSNWPTIPQLYVKGEFV 78 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC---HHHHHHHHHHhCCCCCCEEEECCEEE
Confidence 588999999999999998 8999999999999999999999999866 57788999999999999999999999
Q ss_pred cchhhhhcccccccc
Q psy1894 81 KAEKKILEIPVEAVA 95 (228)
Q Consensus 81 GG~d~L~~~~v~~v~ 95 (228)
||+++|.++...+-+
T Consensus 79 GG~ddl~~l~~~g~L 93 (97)
T TIGR00365 79 GGCDIIMEMYQSGEL 93 (97)
T ss_pred eChHHHHHHHHCcCh
Confidence 999999988665544
No 9
>PF05181 XPA_C: XPA protein C-terminus; InterPro: IPR022656 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry describes the uncharacterised C-terminal in the XPA protein; PDB: 1D4U_A 1XPA_A.
Probab=99.85 E-value=1.7e-22 Score=137.90 Aligned_cols=47 Identities=30% Similarity=0.497 Sum_probs=35.4
Q ss_pred cccccchhhhhhhccCCCCCccc---cccccccCCCC-CCCCceeeeHHHH
Q psy1894 109 ERNFITPNRAMSDFLLKQSDLEG---LKVIKRRSPYE-NEPPISVYWRKDV 155 (228)
Q Consensus 109 ~~~lit~t~a~~~y~l~~~dl~~---l~~~~~~nP~~-~~~~m~lyl~~~v 155 (228)
+++|||+|+|++||||+|+||++ |+||.|+|||+ +|++|+||||+||
T Consensus 2 k~~LiTkTeak~dYlL~d~dL~~~~~L~~i~k~NPH~~~w~~MkLyLr~QV 52 (52)
T PF05181_consen 2 KYSLITKTEAKEDYLLTDCDLDDRELLPFIEKPNPHNSTWGDMKLYLRCQV 52 (52)
T ss_dssp SS--EEHHHHCCCTT--SSTTTTSSS--EEESS-SSSS-TTS-EEE-HHHH
T ss_pred cccceehhhhhhhhccCcccccccccccccccCCCCCCCccCeeEEEeecC
Confidence 46999999999999999999988 99999999998 9999999999998
No 10
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.83 E-value=6.7e-21 Score=143.58 Aligned_cols=83 Identities=16% Similarity=0.227 Sum_probs=76.1
Q ss_pred HHHHhcCCCEEEEEc-----CCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccch
Q psy1894 9 VQDLIASEKILIFSK-----SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAE 83 (228)
Q Consensus 9 l~~ii~~~~VvIYtk-----~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~ 83 (228)
|+++|++++|+||++ ++||||.+|+++|+++|++|+++||+.+ ++++++|.+.+|+.++|+|||||++|||+
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~---~~~~~~l~~~~g~~tvP~vfi~g~~iGG~ 77 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED---EEVRQGLKEYSNWPTFPQLYVNGELVGGC 77 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC---HHHHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence 467899999999998 5999999999999999999999999876 67888999999999999999999999999
Q ss_pred hhhhccccccc
Q psy1894 84 KKILEIPVEAV 94 (228)
Q Consensus 84 d~L~~~~v~~v 94 (228)
+++.++...+.
T Consensus 78 ~~l~~l~~~g~ 88 (90)
T cd03028 78 DIVKEMHESGE 88 (90)
T ss_pred HHHHHHHHcCC
Confidence 99998866554
No 11
>KOG2802|consensus
Probab=99.81 E-value=3.3e-20 Score=170.49 Aligned_cols=124 Identities=42% Similarity=0.584 Sum_probs=109.6
Q ss_pred hhhccccccccCccccccCCcCcccccccchhhhhhhccCCCCCccccccccccCCCCCCCCceeeeHHHHHHHHHHHhC
Q psy1894 85 KILEIPVEAVAKPRIRVDLSVSSTERNFITPNRAMSDFLLKQSDLEGLKVIKRRSPYENEPPISVYWRKDVEAKAIQVWG 164 (228)
Q Consensus 85 ~L~~~~v~~v~k~~~~~~~~~~~~~~~lit~t~a~~~y~l~~~dl~~l~~~~~~nP~~~~~~m~lyl~~~ve~~a~~~wg 164 (228)
+.+.....+++.+| ..|+.+++||+..|+.+|+|+++||++|+++.+.+||.+-++|.+||+++|+..|+++||
T Consensus 91 ~~k~~~s~a~ls~r------~ry~e~n~i~~v~aiaeF~lk~s~ledl~K~r~~s~~~~~ssh~~yl~sdv~~kal~v~g 164 (503)
T KOG2802|consen 91 EPKQVRSKAVLSKR------ERYTENNFITGVRAIAEFCLKSSDLEDLPKIRRRSPHEDTSSHTVYLRSDVEAKALEVWG 164 (503)
T ss_pred hhhhhhhHHhhcch------hcchhhcccchhHHHHHhhccccchhhcccccccCcccCCCCceEEeehhhhhhhheeec
Confidence 34455667888888 467788999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhhhhccccCCCCceeeeeeC
Q psy1894 165 SKERLLQERLKNELERKYQQQHIFTMKRKLRDYRREQGSLADQKMAEKAGLFGLLYPISMLRLT 228 (228)
Q Consensus 165 s~e~l~~e~~~r~~~~~~~~~~~~~~~~~lk~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (228)
|.|+|++|+ |+..+ .|++..|+.++.++++|.++++.. +|+|+||+||++
T Consensus 165 s~eaL~rer-rplve--~yr~~l~~~~R~~~~~R~e~~n~~-----------k~s~rvVatAi~ 214 (503)
T KOG2802|consen 165 SPEALARER-RPLVE--EYRERLFRNQRILREYRDELGNTA-----------KGSGRVVATAIC 214 (503)
T ss_pred CHHHHhhhh-hhHHH--HHHHHHHHHHHHHHHHHHHhcCcc-----------cCCCceehhHHH
Confidence 999999986 34443 799999999999999999999833 578999999874
No 12
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.78 E-value=3.5e-19 Score=128.37 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=65.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
+|+||+.++||+|.+|+.+|+++||+|+.+||+.+ ++.++++.+++|..++|+|||||++|||+++|.++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~---~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~ 71 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF---PERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSL 71 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhh
Confidence 68999999999999999999999999999999987 45678899999999999999999999999999876
No 13
>PTZ00062 glutaredoxin; Provisional
Probab=99.78 E-value=2.9e-19 Score=154.13 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=84.7
Q ss_pred hhHHHHHHHHhcCCCEEEEEc-----CCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCC
Q psy1894 3 PASKQFVQDLIASEKILIFSK-----SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLE 77 (228)
Q Consensus 3 ~~~~~~l~~ii~~~~VvIYtk-----~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~G 77 (228)
+++.++|+++|+.++|+||++ |+||||.+++.+|+++||+|.++||+.+ ++.+++|.+.+|++|||+|||||
T Consensus 100 ~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d---~~~~~~l~~~sg~~TvPqVfI~G 176 (204)
T PTZ00062 100 EDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED---PDLREELKVYSNWPTYPQLYVNG 176 (204)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC---HHHHHHHHHHhCCCCCCeEEECC
Confidence 357889999999999999999 6899999999999999999999999977 57788999999999999999999
Q ss_pred CcccchhhhhccccccccCcc
Q psy1894 78 EKPKAEKKILEIPVEAVAKPR 98 (228)
Q Consensus 78 e~IGG~d~L~~~~v~~v~k~~ 98 (228)
++|||+++++++...+.++.-
T Consensus 177 ~~IGG~d~l~~l~~~G~L~~~ 197 (204)
T PTZ00062 177 ELIGGHDIIKELYESNSLRKV 197 (204)
T ss_pred EEEcChHHHHHHHHcCChhhh
Confidence 999999999999777766544
No 14
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.5e-19 Score=132.96 Aligned_cols=76 Identities=18% Similarity=0.372 Sum_probs=65.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhccccc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPVE 92 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v~ 92 (228)
..|+||++++||||.+|+++|+++|++|++++++.++. .+.++.+...+|+++||+|||||++|||++++.++...
T Consensus 1 ~~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 1 ANVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAK 76 (80)
T ss_pred CCEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhh
Confidence 36999999999999999999999999999999998853 24556666666999999999999999999999877543
No 15
>PRK10638 glutaredoxin 3; Provisional
Probab=99.78 E-value=3.4e-19 Score=131.72 Aligned_cols=78 Identities=14% Similarity=0.305 Sum_probs=70.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcccccccc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPVEAVA 95 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v~~v~ 95 (228)
.+|+||++++||||.+|+.+|+++|++|+.+||+.+ ++.++++.+.+|..++|+||+||++|||++++.++...+.+
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~---~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l 78 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGD---AAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGL 78 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCH
Confidence 479999999999999999999999999999999876 45667899999999999999999999999999998776654
Q ss_pred C
Q psy1894 96 K 96 (228)
Q Consensus 96 k 96 (228)
.
T Consensus 79 ~ 79 (83)
T PRK10638 79 D 79 (83)
T ss_pred H
Confidence 3
No 16
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.77 E-value=4.3e-19 Score=129.25 Aligned_cols=76 Identities=22% Similarity=0.423 Sum_probs=69.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhccccccccC
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPVEAVAK 96 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v~~v~k 96 (228)
|+||++++||+|.+|+.+|+++|++|++++|+.+ ++.++++.+.+|+.++|+|||||++|||++++.++..++.++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~---~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~ 76 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGD---PALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLD 76 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCC---HHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChh
Confidence 6899999999999999999999999999999987 466778999999999999999999999999999997776654
No 17
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.77 E-value=7.4e-19 Score=129.05 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=65.5
Q ss_pred HhcCCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcc
Q psy1894 12 LIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 12 ii~~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
+-+.++|+||++++||+|.+|+.+|+++||+|++++|+.+++ .+++...+|..+||+|||||++|||+++|.++
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~----~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~ 77 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDAR----GRSLRAVTGATTVPQVFIGGKLIGGSDELEAY 77 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChH----HHHHHHHHCCCCcCeEEECCEEEcCHHHHHHH
Confidence 346789999999999999999999999999999999987632 24577788999999999999999999999764
No 18
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.76 E-value=1.1e-18 Score=125.20 Aligned_cols=72 Identities=21% Similarity=0.410 Sum_probs=65.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCC-CCCccccCCCcccchhhhhcccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGAR-SQPSDNDLEEKPKAEKKILEIPV 91 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~-tVP~VfI~Ge~IGG~d~L~~~~v 91 (228)
+|+||++++||+|.+|+.+|+++||+|++++|+.+ ++..+++.+.+|.. ++|+|||||++|||++++.++..
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~---~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD---PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC---HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 58999999999999999999999999999999977 45667788888887 99999999999999999987743
No 19
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.76 E-value=1.4e-18 Score=124.79 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=62.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
+|+||++++||+|.+|+.+|+++|++|++++++.++ + ..++...+|..++|+|||||++|||+++|.++
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~---~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~ 70 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI---T-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKY 70 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh---h-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHH
Confidence 699999999999999999999999999999998874 2 34677888999999999999999999999875
No 20
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.73 E-value=7.4e-18 Score=122.40 Aligned_cols=79 Identities=38% Similarity=0.635 Sum_probs=71.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcccccccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPVEAVA 95 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v~~v~ 95 (228)
+|++|++++||+|..++.+|++++++|+.++++.+++..++++++.+.+|+.++|+||++|++|||++++.++-..+-+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l 79 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKL 79 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCc
Confidence 5899999999999999999999999999999998876567778899999999999999999999999999988665543
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.72 E-value=9.6e-18 Score=124.31 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=63.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHH-----cCCCCEEEEccCCCCchHHHHHHHHHhCC--CCCCccccCCCcccchhhhhc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQK-----LKVTPKTVELDHRDDGDSIQDVLLEITGA--RSQPSDNDLEEKPKAEKKILE 88 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~-----~gI~y~~idVd~~~d~~e~~eeL~~~sg~--~tVP~VfI~Ge~IGG~d~L~~ 88 (228)
++|+||++++||+|.+|+.+|++ .|++|+++|++.++ ...+++...+|+ .+||+|||||++|||+++|.+
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~---~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~ 77 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG---ISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEA 77 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh---HHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHH
Confidence 47999999999999999999999 89999999999763 234568887875 899999999999999999987
Q ss_pred ccc
Q psy1894 89 IPV 91 (228)
Q Consensus 89 ~~v 91 (228)
+..
T Consensus 78 ~~~ 80 (85)
T PRK11200 78 YVK 80 (85)
T ss_pred HHH
Confidence 744
No 22
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.72 E-value=9.9e-18 Score=121.87 Aligned_cols=78 Identities=40% Similarity=0.597 Sum_probs=70.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCC--CEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcccccccc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVT--PKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPVEAVA 95 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~--y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v~~v~ 95 (228)
|++|+++|||+|.+++.+|++++++ |+.++|+.+++..++++++.+.+|..++|+|||||++|||++++.++...+-+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l 80 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence 6899999999999999999999999 99999998766667778899999999999999999999999999988655443
No 23
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.70 E-value=2.2e-17 Score=123.37 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=60.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcC-----CCCEEEEccCCCCchHHHHHHHHHhCC--CCCCccccCCCcccchhhhhccc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLK-----VTPKTVELDHRDDGDSIQDVLLEITGA--RSQPSDNDLEEKPKAEKKILEIP 90 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~g-----I~y~~idVd~~~d~~e~~eeL~~~sg~--~tVP~VfI~Ge~IGG~d~L~~~~ 90 (228)
|+||+++|||+|.+|+++|++++ ++|+++|++.+. ...+++.+.+|. .+||+|||||++|||+++|.++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~---~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG---ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH---HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHH
Confidence 79999999999999999999984 678888887542 224568888886 89999999999999999999874
Q ss_pred c
Q psy1894 91 V 91 (228)
Q Consensus 91 v 91 (228)
.
T Consensus 79 ~ 79 (86)
T TIGR02183 79 K 79 (86)
T ss_pred H
Confidence 4
No 24
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.69 E-value=5.7e-17 Score=112.88 Aligned_cols=70 Identities=26% Similarity=0.440 Sum_probs=65.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
+|++|++++||+|..++.+|++++++|.++|++.+ ++.+++|.+++|..++|++|+||++|||++++.++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~---~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILED---GELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCC---HHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 58999999999999999999999999999999887 45678899999999999999999999999999875
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.67 E-value=7.5e-17 Score=111.99 Aligned_cols=60 Identities=25% Similarity=0.510 Sum_probs=56.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKP 80 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~I 80 (228)
|+||++++||+|.+++++|+++|++|+++||+.+ ++.+++|.+.+|..++|+|||||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~---~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDED---EEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGS---HHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccc---hhHHHHHHHHcCCCccCEEEECCEEC
Confidence 7999999999999999999999999999999998 47788999999999999999999976
No 26
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.67 E-value=5.8e-17 Score=133.40 Aligned_cols=79 Identities=13% Similarity=0.230 Sum_probs=70.7
Q ss_pred CEEEEEcC------CChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCC----CCCCccccCCCcccchhhh
Q psy1894 17 KILIFSKS------YCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGA----RSQPSDNDLEEKPKAEKKI 86 (228)
Q Consensus 17 ~VvIYtk~------~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~----~tVP~VfI~Ge~IGG~d~L 86 (228)
+|+||+++ +||+|.+|+++|++++|+|+++||+++ ++.+++|.+.+|. .++|+|||+|++|||.+++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~---~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMD---SGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCC---HHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 58999999 999999999999999999999999987 5778889988775 8999999999999999999
Q ss_pred hccccccccCcc
Q psy1894 87 LEIPVEAVAKPR 98 (228)
Q Consensus 87 ~~~~v~~v~k~~ 98 (228)
.++...+.+.+-
T Consensus 78 ~~L~e~G~L~~l 89 (147)
T cd03031 78 LRLNESGELRKL 89 (147)
T ss_pred HHHHHcCCHHHH
Confidence 999776655443
No 27
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.5e-15 Score=116.96 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=81.1
Q ss_pred hhHHHHHHHHhcCCCEEEEEcCC-----ChhHHHHHHHHHHcC-CCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccC
Q psy1894 3 PASKQFVQDLIASEKILIFSKSY-----CPYCKMAKDVFQKLK-VTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDL 76 (228)
Q Consensus 3 ~~~~~~l~~ii~~~~VvIYtk~~-----CP~C~~ak~~L~~~g-I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~ 76 (228)
.++.++|+..|+.++|++|.|.+ |+|+.+|..+|..+| ++|..+||-.+ +++|+.|++.++|+|+||++|+
T Consensus 2 ~~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d---~eiR~~lk~~s~WPT~PQLyi~ 78 (105)
T COG0278 2 MEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD---PEIRQGLKEYSNWPTFPQLYVN 78 (105)
T ss_pred chHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccC---HHHHhccHhhcCCCCCceeeEC
Confidence 46779999999999999999865 999999999999999 79999999888 6899999999999999999999
Q ss_pred CCcccchhhhhccccccc
Q psy1894 77 EEKPKAEKKILEIPVEAV 94 (228)
Q Consensus 77 Ge~IGG~d~L~~~~v~~v 94 (228)
|+||||+|.+.++--++-
T Consensus 79 GEfvGG~DIv~Em~q~GE 96 (105)
T COG0278 79 GEFVGGCDIVREMYQSGE 96 (105)
T ss_pred CEEeccHHHHHHHHHcch
Confidence 999999999988855443
No 28
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.59 E-value=1.3e-15 Score=143.32 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=61.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHH-----HHHhCCCCCCccccCCCcccchhhhhc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVL-----LEITGARSQPSDNDLEEKPKAEKKILE 88 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL-----~~~sg~~tVP~VfI~Ge~IGG~d~L~~ 88 (228)
.+|+|||+++||+|.+|+.+|+++||+|+++||+.++...++.+++ ...+|..+||+|||||++|||++++.+
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 5799999999999999999999999999999999775333332232 233689999999999999999999987
No 29
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.57 E-value=4.2e-15 Score=107.00 Aligned_cols=63 Identities=21% Similarity=0.340 Sum_probs=54.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCC-cccchh
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEE-KPKAEK 84 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge-~IGG~d 84 (228)
|+||++++||+|.+|+.+|+++||+|+++||+.+ ++..+++.. .|..+||+|+++|. +|||++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~---~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQ---PEAIDYVKA-QGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHH-cCCcccCEEEECCCcEEeccC
Confidence 6899999999999999999999999999999987 455666665 59999999999775 899953
No 30
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.55 E-value=8.9e-15 Score=108.68 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=58.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccch--hhhhcc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAE--KKILEI 89 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~--d~L~~~ 89 (228)
+|+||++++||+|.+++.+|++.||+|+++||+.+ ++..+.+.. .|..+||+|+++|..|+|+ +.|.++
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~---~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~~~~l~~~ 72 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRV---PEAAETLRA-QGFRQLPVVIAGDLSWSGFRPDMINRL 72 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHH-cCCCCcCEEEECCEEEecCCHHHHHHH
Confidence 69999999999999999999999999999999987 344555654 5999999999999999994 444443
No 31
>KOG0911|consensus
Probab=99.41 E-value=3.5e-13 Score=117.19 Aligned_cols=84 Identities=13% Similarity=0.197 Sum_probs=78.4
Q ss_pred HHHHHHhcCCCEEEEEcCC-----ChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCccc
Q psy1894 7 QFVQDLIASEKILIFSKSY-----CPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPK 81 (228)
Q Consensus 7 ~~l~~ii~~~~VvIYtk~~-----CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IG 81 (228)
+.++++++.++|++|.+.. |+|...+..+|.++|++|..+||-.| +++|+.+++.+.|+|+||+||+|+|+|
T Consensus 130 ~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~D---eelRqglK~fSdWPTfPQlyI~GEFiG 206 (227)
T KOG0911|consen 130 NRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTD---EELRQGLKEFSDWPTFPQLYVKGEFIG 206 (227)
T ss_pred HHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCC---HHHHHHhhhhcCCCCccceeECCEecc
Confidence 4899999999999999877 99999999999999999999999988 689999999999999999999999999
Q ss_pred chhhhhcccccc
Q psy1894 82 AEKKILEIPVEA 93 (228)
Q Consensus 82 G~d~L~~~~v~~ 93 (228)
|.|.|.++.-.+
T Consensus 207 GlDIl~~m~~~g 218 (227)
T KOG0911|consen 207 GLDILKEMHEKG 218 (227)
T ss_pred CcHHHHHHhhcc
Confidence 999999885543
No 32
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.40 E-value=4e-13 Score=102.49 Aligned_cols=74 Identities=11% Similarity=0.038 Sum_probs=63.5
Q ss_pred EEEEEcCC------ChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCC----CCCCccccCCCcccchhhhh
Q psy1894 18 ILIFSKSY------CPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGA----RSQPSDNDLEEKPKAEKKIL 87 (228)
Q Consensus 18 VvIYtk~~------CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~----~tVP~VfI~Ge~IGG~d~L~ 87 (228)
|++|+++. =..|.+++.+|+++||+|+++||+.+ ++.+++|.+.+|. .++|||||||++|||+|+|.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d---~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN---EENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC---HHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 67787665 35789999999999999999999987 5678889988764 99999999999999999999
Q ss_pred ccccccc
Q psy1894 88 EIPVEAV 94 (228)
Q Consensus 88 ~~~v~~v 94 (228)
++...+.
T Consensus 79 ~l~e~g~ 85 (92)
T cd03030 79 EAKENNT 85 (92)
T ss_pred HHHhCCC
Confidence 8866543
No 33
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.39 E-value=7.8e-13 Score=92.48 Aligned_cols=64 Identities=17% Similarity=0.374 Sum_probs=57.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccch
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAE 83 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~ 83 (228)
+|++|+.+|||+|..++.+|++.|++|..+|++.+ ++..+++.+.+|..++|+++++|+.++|+
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~---~~~~~~~~~~~~~~~vP~~~~~~~~~~g~ 64 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD---SAAREEVLKVLGQRGVPVIVIGHKIIVGF 64 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC---HHHHHHHHHHhCCCcccEEEECCEEEeeC
Confidence 48999999999999999999999999999999876 34456788889999999999999988774
No 34
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.33 E-value=3.7e-12 Score=88.98 Aligned_cols=66 Identities=23% Similarity=0.419 Sum_probs=58.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhh
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKK 85 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~ 85 (228)
+|++|+.+|||+|.+++.+|++.|++|..++++.+ ....+++.+.++..++|+|+++|+.|+|.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~---~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED---PEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC---HHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 58999999999999999999999999999999876 3455678888889999999999999988553
No 35
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.23 E-value=2.7e-11 Score=86.24 Aligned_cols=63 Identities=16% Similarity=0.355 Sum_probs=53.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHh-CCCCCCcccc-CCCcccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEIT-GARSQPSDND-LEEKPKA 82 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~s-g~~tVP~VfI-~Ge~IGG 82 (228)
+|+||+.+|||+|.+++.+|+++|++|+.+|++.+ +...+.+..++ |..++|+|++ ||.++..
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~---~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~ 65 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEED---EGAADRVVSVNNGNMTVPTVKFADGSFLTN 65 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCC---HhHHHHHHHHhCCCceeCEEEECCCeEecC
Confidence 58999999999999999999999999999999876 34456677776 8999999976 5666654
No 36
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.18 E-value=2.3e-11 Score=85.43 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=49.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc-----CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL-----KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPK 81 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~-----gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IG 81 (228)
+|++|+.+|||+|..++.+|+++ ++.+..+|++.+ +++.+.+|..++|+++|||++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~-------~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF-------PDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC-------HhHHHHcCCcccCEEEECCEEEE
Confidence 58999999999999999999876 577777887765 23667789999999999998774
No 37
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.94 E-value=1.7e-09 Score=73.57 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=57.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILE 88 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~ 88 (228)
+++|+.++||+|.+++.+|+.+|++|+.++++....... ++.+.++..++|+++++|..+++...|.+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~es~~I~~ 68 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLTESLAILE 68 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEEcHHHHHH
Confidence 368999999999999999999999999999987643222 57778899999999999999988777654
No 38
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.91 E-value=3.2e-09 Score=77.03 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=56.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccC--CCcccchhhhhcc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDL--EEKPKAEKKILEI 89 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~--Ge~IGG~d~L~~~ 89 (228)
+++|+.++||+|.+++.+|..+|++|+.++++.. ....+++...++..+||++..+ |..+.+...|..+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~y 72 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKG---SPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKY 72 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCC---hHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHH
Confidence 6899999999999999999999999999999754 2334568888899999999763 5677777777654
No 39
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.79 E-value=1.6e-08 Score=72.64 Aligned_cols=67 Identities=13% Similarity=0.273 Sum_probs=53.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccC----CCcccchhhhhcc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDL----EEKPKAEKKILEI 89 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~----Ge~IGG~d~L~~~ 89 (228)
+|.+|+.+.||+|.+++.+|..+|++|+.++++... ..++ ..++..+||+++++ |..+.....|.++
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-----~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~y 71 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-----RKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIIST 71 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-----HHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHH
Confidence 588999999999999999999999999999986531 2234 34788999999987 6677666666544
No 40
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.78 E-value=7.8e-09 Score=77.99 Aligned_cols=70 Identities=11% Similarity=0.047 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHHc-----CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCc
Q psy1894 5 SKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKL-----KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEK 79 (228)
Q Consensus 5 ~~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~-----gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~ 79 (228)
.++.++++-+.-.|.+|+.+|||+|..+..++.+. ++.+..+|++.. .++...+|..++|+++|||+.
T Consensus 3 ~~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~-------~e~a~~~~V~~vPt~vidG~~ 75 (89)
T cd03026 3 LLEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF-------QDEVEERGIMSVPAIFLNGEL 75 (89)
T ss_pred HHHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC-------HHHHHHcCCccCCEEEECCEE
Confidence 46778887777899999999999999999988765 677888888765 246677899999999999985
Q ss_pred cc
Q psy1894 80 PK 81 (228)
Q Consensus 80 IG 81 (228)
++
T Consensus 76 ~~ 77 (89)
T cd03026 76 FG 77 (89)
T ss_pred EE
Confidence 53
No 41
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.78 E-value=1.3e-08 Score=72.25 Aligned_cols=66 Identities=15% Similarity=0.301 Sum_probs=54.4
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccC-CCcccchhhhhcc
Q psy1894 19 LIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDL-EEKPKAEKKILEI 89 (228)
Q Consensus 19 vIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~-Ge~IGG~d~L~~~ 89 (228)
.+|+.++||+|.+++.+|...|++|+.+.++.... . ...+.++..++|+++++ |..+++..+|.++
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~--~---~~~~~~~~~~vP~L~~~~~~~l~es~aI~~y 68 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDE--A---TPIRMIGAKQVPILEKDDGSFMAESLDIVAF 68 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCch--H---HHHHhcCCCccCEEEeCCCeEeehHHHHHHH
Confidence 58999999999999999999999999999885421 1 22356788899999987 8899988887654
No 42
>KOG2824|consensus
Probab=98.73 E-value=1e-08 Score=91.77 Aligned_cols=80 Identities=11% Similarity=0.261 Sum_probs=68.8
Q ss_pred CCCEEEEEcCC------ChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCC----CCCCccccCCCcccchh
Q psy1894 15 SEKILIFSKSY------CPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGA----RSQPSDNDLEEKPKAEK 84 (228)
Q Consensus 15 ~~~VvIYtk~~------CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~----~tVP~VfI~Ge~IGG~d 84 (228)
+..|+||+++- --.|..++.+|++++|.|++.||.+| ...+++|+++.|. .+.|+|||+|.+|||.+
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd---~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgae 206 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMD---SEFREELQELLGEDEKAVSLPRVFVKGRYIGGAE 206 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEeccccc---HHHHHHHHHHHhcccccCccCeEEEccEEeccHH
Confidence 45799999764 67899999999999999999999998 5778888888754 78899999999999999
Q ss_pred hhhccccccccCc
Q psy1894 85 KILEIPVEAVAKP 97 (228)
Q Consensus 85 ~L~~~~v~~v~k~ 97 (228)
++.++...+.+++
T Consensus 207 eV~~LnE~GkL~~ 219 (281)
T KOG2824|consen 207 EVVRLNEEGKLGK 219 (281)
T ss_pred HhhhhhhcchHHH
Confidence 9999976655443
No 43
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.69 E-value=5.7e-08 Score=69.06 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=55.0
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccC-CCcccchhhhhc
Q psy1894 19 LIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDL-EEKPKAEKKILE 88 (228)
Q Consensus 19 vIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~-Ge~IGG~d~L~~ 88 (228)
++|+.++||+|.+++.+|+.+|++|+.++++.... .+++.+.++..+||++..+ |..+.....|.+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~----~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNK----PAEMLAASPKGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCC----CHHHHHHCCCCCCCEEEECCCcEEecHHHHHH
Confidence 68999999999999999999999999999887532 2467788899999999986 887766665543
No 44
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.62 E-value=5.2e-08 Score=68.85 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=55.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
+++|+.++||+|.+++.+|+..|++|+.++++.... .+++.+.++..++|++..+|..+.....|.++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~----~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 68 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNP----PEDLAELNPYGTVPTLVDRDLVLYESRIIMEY 68 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCC----CHHHHhhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 479999999999999999999999999998876422 24577778889999998888777666666544
No 45
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.60 E-value=1.1e-07 Score=71.04 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccC-CCcccchhhhhc
Q psy1894 15 SEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDL-EEKPKAEKKILE 88 (228)
Q Consensus 15 ~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~-Ge~IGG~d~L~~ 88 (228)
...+++|+.+.||+|.+++.+|...|++|+.++++.... .+++.+.++..++|++.++ |..+.....|..
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~----~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~ 86 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDK----PDWFLEKNPQGKVPALEIDEGKVVYESLIICE 86 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCC----cHHHHhhCCCCCcCEEEECCCCEEECHHHHHH
Confidence 357999999999999999999999999999999876421 2457778889999999998 777776666654
No 46
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.59 E-value=7.7e-08 Score=67.60 Aligned_cols=69 Identities=10% Similarity=0.054 Sum_probs=53.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc-CCCcccchhhhh
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND-LEEKPKAEKKIL 87 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI-~Ge~IGG~d~L~ 87 (228)
+++|+.++||+|.+++.+|...|++|+.+.++.... ....+++.+.++..++|++.+ ||..+.....|.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~ 70 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAG-EQRSPEFLAKNPAGTVPVLELDDGTVITESVAIC 70 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccC-ccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHH
Confidence 379999999999999999999999999998875321 112245788889999999987 556665555554
No 47
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.59 E-value=6.7e-08 Score=75.53 Aligned_cols=50 Identities=12% Similarity=0.247 Sum_probs=39.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCC
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQ 70 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tV 70 (228)
|+||+.++||+|.+|+++|+++|++|+++|+..++.. +++|..+.+...+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~---~~el~~~~~~~~~ 50 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPS---KEELKKWLEKSGL 50 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCccc---HHHHHHHHHHcCC
Confidence 5899999999999999999999999999999887532 3345554443333
No 48
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.53 E-value=1.3e-07 Score=67.95 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=41.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHH----cCC--CCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCC
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQK----LKV--TPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEE 78 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~----~gI--~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge 78 (228)
.|++|+.+|||+|..+...|++ ++. .+..+|++.+ + ++.+.+|..++|++++||+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~---~----~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN---P----QKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC---H----HHHHHcCCccCCEEEECCE
Confidence 5899999999999999999875 353 3444555443 2 3455689999999999986
No 49
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.51 E-value=1.5e-07 Score=68.59 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=43.8
Q ss_pred CEEEEEcCCChhHHHH----HHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcc
Q psy1894 17 KILIFSKSYCPYCKMA----KDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKP 80 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~a----k~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~I 80 (228)
.|.+|+ +|||.|..+ ..+++++|+++++++||.. . + ...+|..++|++++||+.+
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~---~----~-a~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDM---N----E-ILEAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH---H----H-HHHcCCCcCCEEEECCEEE
Confidence 477887 999999999 6677889999999999832 1 1 2347999999999999644
No 50
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.50 E-value=1.6e-07 Score=66.55 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=55.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhh
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKIL 87 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~ 87 (228)
+++|+.+.||+|.+++.+|+..|++|+.++++.... ....+++.+.++..+||++.++|..+.....|.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~ 69 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKG-EHLKPEFLKLNPQHTVPTLVDNGFVLWESHAIL 69 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccC-CcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHH
Confidence 479999999999999999999999999998875422 223356888888999999988877665555554
No 51
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.49 E-value=2.1e-07 Score=65.46 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=56.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILE 88 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~ 88 (228)
+++|+.+.||+|.+++.+|...|++|+.++++.... ....+++.+.++..++|++.++|..+.....|..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKG-ETRTPEFLALNPNGEVPVLELDGRVLAESNAILV 70 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCc-ccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHH
Confidence 378999999999999999999999999999875321 1223567788888999999999887766665543
No 52
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.48 E-value=3.4e-07 Score=67.54 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=42.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcC----CCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCC
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLK----VTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLE 77 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~g----I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~G 77 (228)
+|++||+++|+.|..|+..|.... +.++.+||+.+ +++...||. .+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d-------~~l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED-------PELFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT-------HHHHHHSCT-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC-------HHHHHHhcC-CCCEEEEcC
Confidence 589999999999999999999654 45677888855 247778884 899999999
No 53
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.48 E-value=2e-07 Score=71.58 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=38.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCC
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGA 67 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~ 67 (228)
|+||+.++||+|.+|+.+|+++||+|+++|+..++.. .++|.++.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~---~~~l~~~~~~ 47 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPT---KEELKELLAK 47 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCC---HHHHHHHHHh
Confidence 5899999999999999999999999999999876432 3455655543
No 54
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=98.43 E-value=3.7e-07 Score=70.69 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=53.1
Q ss_pred CEEEEEcCCC------hhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhC---------CCCCCccccCCCccc
Q psy1894 17 KILIFSKSYC------PYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG---------ARSQPSDNDLEEKPK 81 (228)
Q Consensus 17 ~VvIYtk~~C------P~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg---------~~tVP~VfI~Ge~IG 81 (228)
.|.||+.+.- ..|.++..+|+.++|+|+.+||..+ ++.++.+.+..| ....||||.||+++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~---e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD---EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT----HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC---HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 5788886663 3577999999999999999999987 567788887763 445589999999999
Q ss_pred chhhhhcccc
Q psy1894 82 AEKKILEIPV 91 (228)
Q Consensus 82 G~d~L~~~~v 91 (228)
+++++.++..
T Consensus 79 dye~f~ea~E 88 (99)
T PF04908_consen 79 DYEDFEEANE 88 (99)
T ss_dssp EHHHHHHHHC
T ss_pred eHHHHHHHHh
Confidence 9999987644
No 55
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.43 E-value=3.8e-07 Score=71.17 Aligned_cols=68 Identities=18% Similarity=0.426 Sum_probs=49.1
Q ss_pred CChhHHHHHHH-----HhcCCCEEEE-EcCCChhHHHHHHHHHHcC-----CCCEEEEccCCCCchHHHHHHHHHhCCCC
Q psy1894 1 MNPASKQFVQD-----LIASEKILIF-SKSYCPYCKMAKDVFQKLK-----VTPKTVELDHRDDGDSIQDVLLEITGARS 69 (228)
Q Consensus 1 ~~~~~~~~l~~-----ii~~~~VvIY-tk~~CP~C~~ak~~L~~~g-----I~y~~idVd~~~d~~e~~eeL~~~sg~~t 69 (228)
|+++.++.++. +.+...|++| +.+|||+|..++.+|++.. +.+..+|+|.. .++...+|..+
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~-------~~l~~~~~v~~ 75 (113)
T cd02975 3 LSDEDRKALKEEFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED-------KEKAEKYGVER 75 (113)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC-------HHHHHHcCCCc
Confidence 45566555555 5555567666 7899999999999998654 44556666654 25778899999
Q ss_pred CCcccc
Q psy1894 70 QPSDND 75 (228)
Q Consensus 70 VP~VfI 75 (228)
+|++++
T Consensus 76 vPt~~i 81 (113)
T cd02975 76 VPTTIF 81 (113)
T ss_pred CCEEEE
Confidence 999988
No 56
>PHA02125 thioredoxin-like protein
Probab=98.39 E-value=4.9e-07 Score=65.41 Aligned_cols=53 Identities=25% Similarity=0.407 Sum_probs=42.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCC
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEE 78 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge 78 (228)
|++|+.+|||+|..++.+|++. .+..++||.+.. .++...++..++|++. +|+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~-----~~l~~~~~v~~~PT~~-~g~ 54 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEG-----VELTAKHHIRSLPTLV-NTS 54 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCC-----HHHHHHcCCceeCeEE-CCE
Confidence 8999999999999999999864 567777776532 2577788999999987 565
No 57
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.35 E-value=9e-07 Score=71.30 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=37.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHh
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEIT 65 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~s 65 (228)
|+||+.++||+|.+|+.+|+++||+|+++|+..++. .+++|..+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~---~~~eL~~~l 46 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPL---TIDEIKQIL 46 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChh---hHHHHHHHH
Confidence 889999999999999999999999999999987742 234455543
No 58
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.35 E-value=2e-07 Score=89.85 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=59.4
Q ss_pred CChhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcc
Q psy1894 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKP 80 (228)
Q Consensus 1 ~~~~~~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~I 80 (228)
+++++++.|+.+-....|.+|.+++||||..|...+.++.+....|..+.. |+.+ .+++.+.++..+||++||||+.+
T Consensus 104 l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~i-d~~~-~~~~~~~~~v~~VP~~~i~~~~~ 181 (515)
T TIGR03140 104 LDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMI-DGAL-FQDEVEALGIQGVPAVFLNGEEF 181 (515)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEE-Echh-CHHHHHhcCCcccCEEEECCcEE
Confidence 468889999999888999999999999999999999877554333322221 1112 24577888999999999999855
No 59
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.35 E-value=3.2e-07 Score=66.03 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=58.8
Q ss_pred EEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcccc
Q psy1894 20 IFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPV 91 (228)
Q Consensus 20 IYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v 91 (228)
+|+.++||+|.+++.+|..+||+|+.++++.... ...+.+.++..+||++..||..+.+..+|..+-.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~----~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEK----RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTST----SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccc----hhHHHhhcccccceEEEECCEEEeCHHHHHHHHH
Confidence 6899999999999999999999999999986532 3567888899999999999999988888876644
No 60
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.32 E-value=2.8e-07 Score=88.86 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=58.5
Q ss_pred CChhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHHcCCC-----CEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVT-----PKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 1 ~~~~~~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~gI~-----y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
++++++++|+.+.+...|.+|.+++||||..|...+.+..+. .+.+|.... .++.+.++..+||++||
T Consensus 103 l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~-------~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 103 LDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALF-------QDEVEARNIMAVPTVFL 175 (517)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhC-------HhHHHhcCCcccCEEEE
Confidence 478889999999889999999999999999999999876443 333433332 35777889999999999
Q ss_pred CCCcc
Q psy1894 76 LEEKP 80 (228)
Q Consensus 76 ~Ge~I 80 (228)
||+.+
T Consensus 176 ~~~~~ 180 (517)
T PRK15317 176 NGEEF 180 (517)
T ss_pred CCcEE
Confidence 99854
No 61
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.23 E-value=2.4e-06 Score=67.11 Aligned_cols=35 Identities=14% Similarity=0.402 Sum_probs=32.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCC
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD 52 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~ 52 (228)
|+||+.++||+|.+|+.+|+++||+|+++|+..++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~ 35 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDG 35 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCCh
Confidence 57999999999999999999999999999998764
No 62
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.22 E-value=1.5e-06 Score=84.74 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=59.5
Q ss_pred CChhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHH----c-CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQK----L-KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 1 ~~~~~~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~----~-gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
+++++.+.|+.+-....|.+|..++||+|..+...+.. + +|..+.+++... +++.+.++..+||.++|
T Consensus 463 l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~-------~~~~~~~~v~~vP~~~i 535 (555)
T TIGR03143 463 LGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF-------PDLKDEYGIMSVPAIVV 535 (555)
T ss_pred CCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc-------HHHHHhCCceecCEEEE
Confidence 46788899998888889999999999999998887654 3 678888888765 35677889999999999
Q ss_pred CCC
Q psy1894 76 LEE 78 (228)
Q Consensus 76 ~Ge 78 (228)
||+
T Consensus 536 ~~~ 538 (555)
T TIGR03143 536 DDQ 538 (555)
T ss_pred CCE
Confidence 996
No 63
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.21 E-value=2e-06 Score=62.00 Aligned_cols=70 Identities=4% Similarity=0.035 Sum_probs=56.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILE 88 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~ 88 (228)
+++|..+.||+|.+++.+|..+|++|+.+.++.... ....+++.++++..+||++..||..+.....|..
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~ 70 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLS-EHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIID 70 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcC-ccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHH
Confidence 478999999999999999999999999998876432 1123468889999999999988887766666543
No 64
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.20 E-value=3.1e-06 Score=66.33 Aligned_cols=35 Identities=17% Similarity=0.395 Sum_probs=33.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCC
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD 52 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~ 52 (228)
|+||+.++||+|.+|+.+|+++||+|+++|+..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~ 36 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQP 36 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCc
Confidence 78999999999999999999999999999998764
No 65
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.20 E-value=2.4e-06 Score=73.49 Aligned_cols=70 Identities=23% Similarity=0.322 Sum_probs=51.9
Q ss_pred ChhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHHcC-----CCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccC
Q psy1894 2 NPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLK-----VTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDL 76 (228)
Q Consensus 2 ~~~~~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~g-----I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~ 76 (228)
++.+.+.++.+-....|++|+.+|||+|..++.+++.+- |.+..+|++.. .++.+.+|..++|+++|+
T Consensus 121 ~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~-------~~~~~~~~V~~vPtl~i~ 193 (215)
T TIGR02187 121 SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN-------PDLAEKYGVMSVPKIVIN 193 (215)
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC-------HHHHHHhCCccCCEEEEe
Confidence 455677777766666788899999999999999888653 33444555443 246677899999999987
Q ss_pred CC
Q psy1894 77 EE 78 (228)
Q Consensus 77 Ge 78 (228)
++
T Consensus 194 ~~ 195 (215)
T TIGR02187 194 KG 195 (215)
T ss_pred cC
Confidence 65
No 66
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.16 E-value=3.9e-06 Score=59.77 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=57.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
+++|+.+.||+|.+++.+|...|++|+.+.++.... ....+.+.+.++..++|++..+|..+.....|.++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~y 72 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKG-EHKSPEHLARNPFGQIPALEDGDLKLFESRAITRY 72 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCcccc-ccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 689999999999999999999999999998876422 12234678888999999998888777666666544
No 67
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.16 E-value=6.3e-06 Score=66.63 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=33.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCC
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD 52 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~ 52 (228)
|+||+.++|+.|.+|+.+|+++||+|+++|+..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence 78999999999999999999999999999998775
No 68
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.12 E-value=8e-06 Score=65.93 Aligned_cols=35 Identities=11% Similarity=0.402 Sum_probs=33.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCC
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD 52 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~ 52 (228)
|+||+.++|+.|.+|+++|+++||+|+++|+..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCc
Confidence 88999999999999999999999999999998875
No 69
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.08 E-value=9.8e-06 Score=62.96 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=35.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCC-CchHHH
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQ 58 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~-d~~e~~ 58 (228)
|+||+.++|+.|.+|+.+|+++|++|+++|+..++ +..++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~ 42 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLE 42 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHH
Confidence 68999999999999999999999999999998775 334443
No 70
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.06 E-value=7e-06 Score=58.47 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=53.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhC-CCCCCccccCCCcccchhhhhcc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG-ARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg-~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
+.+|+.+.||+|.+++.+|...|++|+.++++.... ..++.+.+. ..++|.+..+|..+.....|.++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~----~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~y 69 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNK----SELLLASNPVHKKIPVLLHNGKPICESLIIVEY 69 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccC----CHHHHHhCCCCCCCCEEEECCEEeehHHHHHHH
Confidence 468999999999999999999999999988775421 234666666 48999998888777776666543
No 71
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.05 E-value=4.8e-06 Score=63.49 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=53.9
Q ss_pred CCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcccc
Q psy1894 24 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPV 91 (228)
Q Consensus 24 ~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v 91 (228)
..||||++++.+|...||+|+.+++|.... + +.+.+++....||++..+|..|...+.|.++-.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p---~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-P---EDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCC-C---HHHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 559999999999999999999999987532 2 458888888999999989988888888877644
No 72
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.05 E-value=6.6e-06 Score=58.41 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=46.4
Q ss_pred CChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcc
Q psy1894 25 YCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 25 ~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
+||+|.+++.+|+..|++|+.++++... .++...+|++.++|..+.+...|.++
T Consensus 15 ~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------~~p~g~vP~l~~~g~~l~es~~I~~y 68 (72)
T cd03054 15 LSPECLKVETYLRMAGIPYEVVFSSNPW-----------RSPTGKLPFLELNGEKIADSEKIIEY 68 (72)
T ss_pred CCHHHHHHHHHHHhCCCceEEEecCCcc-----------cCCCcccCEEEECCEEEcCHHHHHHH
Confidence 7999999999999999999999997541 45677999999999989888777654
No 73
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.04 E-value=8.7e-06 Score=57.72 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=53.0
Q ss_pred EEEEEcCCChhHHHHHHHHHH--cCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc-CCCcccchhhhhc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQK--LKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND-LEEKPKAEKKILE 88 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~--~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI-~Ge~IGG~d~L~~ 88 (228)
+.+|+.+.||+|.+++.+|.. .|++|+.+.++.... .+++.+.++..++|++.. ||..+.....|.+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~----~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~ 70 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSD----DESLLAVNPLGKIPALVLDDGEALFDSRVICE 70 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccC----ChHHHHhCCCCCCCEEEECCCCEEECHHHHHh
Confidence 368999999999999999999 899999999975321 135667788899999975 7777766666543
No 74
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.01 E-value=6.9e-06 Score=59.67 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=41.1
Q ss_pred CEEEEEcCCChhHHHHHHHH----HHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCC--ccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVF----QKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEE--KPK 81 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L----~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge--~IG 81 (228)
+|.+| .++||+|..+..++ ..+|+.++.+++ .+ .+++ ..+|..++|+++|||+ +.|
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~------~~~~-~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI-ED------FEEI-EKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET-TT------HHHH-HHTT-SSSSEEEETTEEEEES
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc-cC------HHHH-HHcCCCCCCEEEECCEEEEEe
Confidence 57775 57799999776655 567888888887 32 1345 6789999999999998 445
No 75
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.00 E-value=9.1e-06 Score=57.09 Aligned_cols=70 Identities=7% Similarity=-0.013 Sum_probs=55.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILE 88 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~ 88 (228)
+++|+.+.|+.|.+++.+|...|++|+.+.++.... ....+++.+.++..++|++..+|..+....+|..
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~ 70 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKG-EQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIE 70 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccC-CcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHH
Confidence 368999999999999999999999999998876421 1123457788889999999988887766655543
No 76
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.97 E-value=3.8e-05 Score=60.96 Aligned_cols=74 Identities=9% Similarity=0.213 Sum_probs=48.4
Q ss_pred HHHHHHhcCC-C-EEEEEcCCChhHHHHHHHHH----HcCCCCEEEEccCCC-----CchHHHHHHHHHhC----CCCCC
Q psy1894 7 QFVQDLIASE-K-ILIFSKSYCPYCKMAKDVFQ----KLKVTPKTVELDHRD-----DGDSIQDVLLEITG----ARSQP 71 (228)
Q Consensus 7 ~~l~~ii~~~-~-VvIYtk~~CP~C~~ak~~L~----~~gI~y~~idVd~~~-----d~~e~~eeL~~~sg----~~tVP 71 (228)
+.+.+.++.. . |+.|+.+|||+|+.+.-.|. +.++++-.+|+|.+. +..++ .++.+.++ ...+|
T Consensus 14 ~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~-~~~~~~~~i~~~i~~~P 92 (122)
T TIGR01295 14 VRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDL-TAFRSRFGIPTSFMGTP 92 (122)
T ss_pred HHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHH-HHHHHHcCCcccCCCCC
Confidence 4556666653 3 88899999999999766665 446778888888642 11133 24555544 44599
Q ss_pred cc--ccCCCccc
Q psy1894 72 SD--NDLEEKPK 81 (228)
Q Consensus 72 ~V--fI~Ge~IG 81 (228)
++ |-+|+.++
T Consensus 93 T~v~~k~Gk~v~ 104 (122)
T TIGR01295 93 TFVHITDGKQVS 104 (122)
T ss_pred EEEEEeCCeEEE
Confidence 98 44887554
No 77
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.87 E-value=2.4e-05 Score=55.99 Aligned_cols=69 Identities=9% Similarity=-0.068 Sum_probs=56.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
++++|..+.|+.|.+++.+|...|++|+.+.++.+ ...+++...++..++|++..+|..+.....|..+
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~----~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 69 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE----EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRH 69 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH----HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 46899999999999999999999999999988752 2234577777889999999888888776666544
No 78
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.85 E-value=5.4e-05 Score=59.69 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=35.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCC-CchHHH
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQ 58 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~-d~~e~~ 58 (228)
.|+||+.+.|+.|.+|+.+|+++|++|+++|+-.++ +..++.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~ 43 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLR 43 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHH
Confidence 488999999999999999999999999999997764 434443
No 79
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.83 E-value=2.2e-05 Score=55.60 Aligned_cols=69 Identities=10% Similarity=-0.103 Sum_probs=54.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
+++|..+.|+.|.+++.+|...|++|+.+.++.... ....+...++..++|++..+|..+.....|..+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEW---PELDLKPTLPFGQLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHh---hhhhhccCCcCCCCCEEEECCEEEEecHHHHHH
Confidence 368999999999999999999999999998875421 112366778899999999888777666665543
No 80
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.83 E-value=1.1e-05 Score=57.48 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=48.4
Q ss_pred CChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc-CCCcccchhhhhcc
Q psy1894 25 YCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND-LEEKPKAEKKILEI 89 (228)
Q Consensus 25 ~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI-~Ge~IGG~d~L~~~ 89 (228)
.||||.++.-+|+.+|++|+...+...+++....+++.+.++..+||++.. +|..+.....|.++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~y 66 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEY 66 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHH
Confidence 499999999999999999998777432222222246888999999999997 78888877777554
No 81
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.78 E-value=3.9e-05 Score=55.49 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=55.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccC---CCcccchhhhhccc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDL---EEKPKAEKKILEIP 90 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~---Ge~IGG~d~L~~~~ 90 (228)
+++|+.+. |+|.+++.+|...|++|+.+.++.... ....+++.+.++..+||++..+ |..+.....|..+-
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL 75 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKG-EQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYL 75 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCC-cccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHH
Confidence 68999886 999999999999999999988875321 1223567788889999999887 66776666666553
No 82
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.77 E-value=6.1e-05 Score=56.81 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=40.9
Q ss_pred HHHHhcCCC--EEEEEcCCChhHHHHHHHH-------HHc--CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 9 VQDLIASEK--ILIFSKSYCPYCKMAKDVF-------QKL--KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 9 l~~ii~~~~--VvIYtk~~CP~C~~ak~~L-------~~~--gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
+.+.++.++ ++.|+.+||++|......+ +.+ ++.+-.+|++.+. ....++...++..++|++++
T Consensus 4 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 4 LAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKND---PEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCC---HHHHHHHHHcCCCCCCEEEE
Confidence 445555554 6789999999999887543 122 3333444554432 22346777889999998844
No 83
>KOG3029|consensus
Probab=97.76 E-value=2.9e-05 Score=70.39 Aligned_cols=65 Identities=12% Similarity=0.283 Sum_probs=54.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhh
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKIL 87 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~ 87 (228)
++++|.-..||||-+++++|+=+||+|.+++|+.. .+.++ +.+.+..||.+.|+|+-+-+.+-|.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV-----~r~eI-k~SsykKVPil~~~Geqm~dSsvII 154 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPV-----LRQEI-KWSSYKKVPILLIRGEQMVDSSVII 154 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecch-----hhhhc-cccccccccEEEeccceechhHHHH
Confidence 89999999999999999999999999999999875 23333 3567899999999998766655444
No 84
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.76 E-value=2.2e-05 Score=57.41 Aligned_cols=65 Identities=20% Similarity=0.107 Sum_probs=50.0
Q ss_pred CCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccC-CCcccchhhhhccc
Q psy1894 24 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDL-EEKPKAEKKILEIP 90 (228)
Q Consensus 24 ~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~-Ge~IGG~d~L~~~~ 90 (228)
++||+|.+++.+|...|++|+.+.++.... .....++ ..++...+|++..+ |..+.+...|.++-
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~-~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL 79 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDI-PPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYL 79 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCc-ccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHH
Confidence 679999999999999999999988875321 2222344 56788999999888 78888777776553
No 85
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.73 E-value=5.7e-05 Score=53.97 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=54.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILE 88 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~ 88 (228)
+++|+.+.||+|.++..+|...|++|+.+.++.... ....+++.+.+....+|++..+|..+.....|..
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~ 70 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKG-EQLTPEFKKINPFGKVPAIVDGDFTLAESVAILR 70 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCC-CcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHH
Confidence 368999999999999999999999999998875421 1122457778889999999888766655555543
No 86
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.73 E-value=5.2e-05 Score=64.46 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=57.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhccc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIP 90 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~ 90 (228)
..+++|+.++||+|.++..+|...|++|+.+.|+... ..+++..++...+||++..||..|-....|..+-
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~----~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL 79 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDN----LPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYL 79 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCccc----CCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 3589999999999999999999999999999998642 1246788888999999988876665555555543
No 87
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.73 E-value=6.2e-05 Score=54.03 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=50.7
Q ss_pred EEEEEcC-------CChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcc
Q psy1894 18 ILIFSKS-------YCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 18 VvIYtk~-------~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
+++|+.+ .||+|.++..+|+..|++|+.++++.. ..++..++|++..+|+.+.+...|.++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----------~~~p~g~vPvl~~~g~~l~eS~~I~~y 69 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----------KRSPKGKLPFIELNGEKIADSELIIDH 69 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----------cCCCCCCCCEEEECCEEEcCHHHHHHH
Confidence 5788887 579999999999999999999887641 356788999999999988887777654
No 88
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.70 E-value=5.6e-05 Score=64.52 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=56.6
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccc-cCCCcccchhhhhccccccc
Q psy1894 19 LIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDN-DLEEKPKAEKKILEIPVEAV 94 (228)
Q Consensus 19 vIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf-I~Ge~IGG~d~L~~~~v~~v 94 (228)
++|+.+.||+|.+++.+|..+|++|+.++++.... . ...+.++..+||++. .||..+++...|..+-....
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~----~-~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~ 72 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE----E-TPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLD 72 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc----h-hHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhC
Confidence 37899999999999999999999999988865421 1 125667789999997 78888999888887755433
No 89
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.68 E-value=8.6e-05 Score=52.51 Aligned_cols=56 Identities=27% Similarity=0.309 Sum_probs=42.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHH-----cCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--CCC
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQK-----LKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND--LEE 78 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~-----~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~Ge 78 (228)
.-+++|+.+||++|..+...|++ .++.+-.++++.. ..+...++...+|++++ +|+
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN-------PELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC-------hhHHHhcCcccccEEEEEECCE
Confidence 34889999999999999999987 5666666676654 23566678899999876 665
No 90
>PRK10387 glutaredoxin 2; Provisional
Probab=97.68 E-value=8e-05 Score=62.52 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=56.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcc-ccCCCcccchhhhhccccccc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSD-NDLEEKPKAEKKILEIPVEAV 94 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V-fI~Ge~IGG~d~L~~~~v~~v 94 (228)
+++|+.+.||+|.+++.+|+..|++|+.++++..+ .. .. .+.++..+||++ ..||..+.+...|..+-.+..
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~---~~-~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~ 73 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDD---EA-TP-IRMIGQKQVPILQKDDGSYMPESLDIVHYIDELD 73 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCc---hh-hH-HHhcCCcccceEEecCCeEecCHHHHHHHHHHhC
Confidence 47899999999999999999999999999986542 11 11 346678899999 568888888888887765433
No 91
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.65 E-value=8.7e-05 Score=53.15 Aligned_cols=67 Identities=7% Similarity=-0.038 Sum_probs=52.9
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccC-CCcccchhhhh
Q psy1894 19 LIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDL-EEKPKAEKKIL 87 (228)
Q Consensus 19 vIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~-Ge~IGG~d~L~ 87 (228)
++|+.+.||+|.+++-+|...|++|+.+.++...+ ...+++.+++...++|++..+ |..+.....|.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~--~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~ 69 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE--NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIA 69 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc--cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHH
Confidence 58999999999999999999999999998886421 122467888899999999985 66665544443
No 92
>PHA02278 thioredoxin-like protein
Probab=97.62 E-value=0.00018 Score=55.67 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=47.4
Q ss_pred HHHHHHhcC-C-CEEEEEcCCChhHHHHHHHHHHc------CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--C
Q psy1894 7 QFVQDLIAS-E-KILIFSKSYCPYCKMAKDVFQKL------KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND--L 76 (228)
Q Consensus 7 ~~l~~ii~~-~-~VvIYtk~~CP~C~~ak~~L~~~------gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~ 76 (228)
+.+.+.+.. . -|+-|..+||+.|..+.-.|++. .+.+-.+|+|.++.. .+.+.+.++..++|++.+ |
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d---~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVD---REKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccc---cHHHHHHCCCccccEEEEEEC
Confidence 334444443 3 46778999999999988777654 234666777765210 234778889999999843 7
Q ss_pred CCcc
Q psy1894 77 EEKP 80 (228)
Q Consensus 77 Ge~I 80 (228)
|+.+
T Consensus 82 G~~v 85 (103)
T PHA02278 82 GQLV 85 (103)
T ss_pred CEEE
Confidence 8754
No 93
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.58 E-value=0.00012 Score=46.96 Aligned_cols=57 Identities=19% Similarity=0.472 Sum_probs=42.2
Q ss_pred EEEEEcCCChhHHHHHHHHH-----HcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCC
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQ-----KLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEE 78 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~-----~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge 78 (228)
+++|..++||+|..+...+. ..++.+..++++... ..... ....+..++|++++.+.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~P~~~~~~~ 62 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP---ALEKE-LKRYGVGGVPTLVVFGP 62 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh---HHhhH-HHhCCCccccEEEEEeC
Confidence 47889999999999999999 456777777877663 21111 24567899999987664
No 94
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.56 E-value=0.00014 Score=54.46 Aligned_cols=57 Identities=18% Similarity=0.361 Sum_probs=40.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHH----c--CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--CCCcc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQK----L--KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND--LEEKP 80 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~----~--gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~Ge~I 80 (228)
-+++|..+||+.|..+...|++ + ++.+-.+|++.+ .++...++..++|++++ +|+.+
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~-------~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED-------QEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC-------HHHHHHCCCeeccEEEEEECCeEE
Confidence 3678899999999999888865 2 244555555544 24666778999999855 66544
No 95
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.56 E-value=0.00012 Score=62.87 Aligned_cols=74 Identities=18% Similarity=0.390 Sum_probs=52.2
Q ss_pred ChhHHHHHHHH-----hcCCCEEEEEc---CCChhHHHHHHHHHHcC-----CCCEEEEccCCCCchHHHHHHHHHhCCC
Q psy1894 2 NPASKQFVQDL-----IASEKILIFSK---SYCPYCKMAKDVFQKLK-----VTPKTVELDHRDDGDSIQDVLLEITGAR 68 (228)
Q Consensus 2 ~~~~~~~l~~i-----i~~~~VvIYtk---~~CP~C~~ak~~L~~~g-----I~y~~idVd~~~d~~e~~eeL~~~sg~~ 68 (228)
|++.+..++.+ .+...|++|+. +|||+|..+..+|++.. +.+..+++|.+.+ .++...+|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-----~~l~~~~~V~ 76 (215)
T TIGR02187 2 SEEDREILKELFLKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-----KEEAEKYGVE 76 (215)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-----HHHHHHcCCC
Confidence 55665555555 33457889988 99999999999887652 3445677775432 3578888999
Q ss_pred CCCcccc--CCCcc
Q psy1894 69 SQPSDND--LEEKP 80 (228)
Q Consensus 69 tVP~VfI--~Ge~I 80 (228)
++|++.+ ||+.+
T Consensus 77 ~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 77 RVPTTIILEEGKDG 90 (215)
T ss_pred ccCEEEEEeCCeee
Confidence 9999965 55443
No 96
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=97.52 E-value=0.00017 Score=51.13 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=53.4
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhh
Q psy1894 19 LIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKIL 87 (228)
Q Consensus 19 vIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~ 87 (228)
.+|+.+++|+|.++..+|...|++|+.++++.... ....+++.++++..++|.+..+|..+.....|.
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~-~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~ 69 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFG-GLDTPEFLAMNPNGRVPVLEDGDFVLWESNAIL 69 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEeccccc-cccCHHHHhhCCCCCCCEEEECCEEEECHHHHH
Confidence 68999999999999999999999999988875321 122345778888999999988887666555554
No 97
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00019 Score=53.23 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=48.1
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCC----------CchHHHHHHHHHhCCCCCCccccCC-Ccccchhhhh
Q psy1894 19 LIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD----------DGDSIQDVLLEITGARSQPSDNDLE-EKPKAEKKIL 87 (228)
Q Consensus 19 vIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~----------d~~e~~eeL~~~sg~~tVP~VfI~G-e~IGG~d~L~ 87 (228)
++|+...||.|..+.+.|+++++.|++++|..+- |.....++.+ ..|+-.+|.+.+++ +.|=| +||.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk-~~gyiGIPall~~d~~vVl~-~Dl~ 82 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVK-SNGYIGIPALLTDDGKVVLG-DDLS 82 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhh-hcCcccceEEEeCCCcEEEe-chhh
Confidence 8999999999999999999999999999996531 1111112222 35888999997754 44433 5554
Q ss_pred c
Q psy1894 88 E 88 (228)
Q Consensus 88 ~ 88 (228)
+
T Consensus 83 k 83 (85)
T COG4545 83 K 83 (85)
T ss_pred h
Confidence 4
No 98
>PTZ00051 thioredoxin; Provisional
Probab=97.49 E-value=0.00037 Score=51.54 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHHc-----CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--C
Q psy1894 6 KQFVQDLIASEK--ILIFSKSYCPYCKMAKDVFQKL-----KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND--L 76 (228)
Q Consensus 6 ~~~l~~ii~~~~--VvIYtk~~CP~C~~ak~~L~~~-----gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~ 76 (228)
.+.+..++...+ ++.|..+||+.|......|... ++.+-.+|++.. ..+.+.++...+|++.+ +
T Consensus 8 ~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-------~~~~~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL-------SEVAEKENITSMPTFKVFKN 80 (98)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch-------HHHHHHCCCceeeEEEEEeC
Confidence 355666776655 6789999999999998887663 343444444432 24667789999998744 6
Q ss_pred CCcc
Q psy1894 77 EEKP 80 (228)
Q Consensus 77 Ge~I 80 (228)
|+.+
T Consensus 81 g~~~ 84 (98)
T PTZ00051 81 GSVV 84 (98)
T ss_pred CeEE
Confidence 6544
No 99
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.48 E-value=0.00025 Score=56.23 Aligned_cols=58 Identities=16% Similarity=0.242 Sum_probs=42.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcC------CCCEEEEccCCCCchHHHHHHHHHhCCCCCCcc--ccCCCccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLK------VTPKTVELDHRDDGDSIQDVLLEITGARSQPSD--NDLEEKPK 81 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~g------I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V--fI~Ge~IG 81 (228)
-|+-|+.+|||.|..+.-.|+++- +.+-.+|+|.. .++...+|..++|++ |-||+.++
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~-------~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV-------PDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC-------HHHHHHcCCCCCCEEEEEECCEEEE
Confidence 456699999999999988886542 23344556554 247788899999998 44888664
No 100
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00044 Score=54.99 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=33.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCC
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD 52 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~ 52 (228)
.|+||+.|.|.-|..|+++|+++||+|+++++..++
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~ 37 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTP 37 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCC
Confidence 589999999999999999999999999999987764
No 101
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.46 E-value=0.00035 Score=52.19 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=42.8
Q ss_pred HHHHhcCCCEEEEEcCCChhHHHHHHHHHHc-------CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 9 VQDLIASEKILIFSKSYCPYCKMAKDVFQKL-------KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 9 l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~-------gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
+.++++...++.|..+|||+|......|.+. ++.+-.+|++.+ ..+...++..++|++++
T Consensus 11 f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-------~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 11 WTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-------PGLSGRFFVTALPTIYH 77 (101)
T ss_pred HHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-------HhHHHHcCCcccCEEEE
Confidence 4456777789999999999999888777644 233344444433 23566789999999965
No 102
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.46 E-value=0.00036 Score=54.41 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=41.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc-----CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcc--ccCCCccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL-----KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSD--NDLEEKPK 81 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~-----gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V--fI~Ge~IG 81 (228)
-|+.|..+||+.|..+...|.++ ++.+-.+|++.. .++.+.++..++|++ |-+|+.++
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~-------~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA-------PFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC-------HHHHHHCCCccCCEEEEEECCEEEE
Confidence 36677889999999998888763 344444555543 247777899999998 44887554
No 103
>KOG0910|consensus
Probab=97.45 E-value=0.00018 Score=59.63 Aligned_cols=69 Identities=23% Similarity=0.345 Sum_probs=50.6
Q ss_pred hHHHHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHHcC------CCCEEEEccCCCCchHHHHHHHHHhCCCCCCcc--
Q psy1894 4 ASKQFVQDLIASEK--ILIFSKSYCPYCKMAKDVFQKLK------VTPKTVELDHRDDGDSIQDVLLEITGARSQPSD-- 73 (228)
Q Consensus 4 ~~~~~l~~ii~~~~--VvIYtk~~CP~C~~ak~~L~~~g------I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V-- 73 (228)
+..++-..+++... ||.|..+||..|....-.|+++- +.+-.+|+|++. +|...|+...||+|
T Consensus 49 s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~-------ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 49 SDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHP-------ELAEDYEISAVPTVLV 121 (150)
T ss_pred CHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccccc-------chHhhcceeeeeEEEE
Confidence 34566677777653 77899999999999988887652 333445666552 47888999999998
Q ss_pred ccCCCc
Q psy1894 74 NDLEEK 79 (228)
Q Consensus 74 fI~Ge~ 79 (228)
|-||+.
T Consensus 122 fknGe~ 127 (150)
T KOG0910|consen 122 FKNGEK 127 (150)
T ss_pred EECCEE
Confidence 558873
No 104
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=97.44 E-value=0.0002 Score=51.20 Aligned_cols=69 Identities=14% Similarity=0.058 Sum_probs=52.5
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccC-CCcccchhhhhcc
Q psy1894 19 LIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDL-EEKPKAEKKILEI 89 (228)
Q Consensus 19 vIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~-Ge~IGG~d~L~~~ 89 (228)
.+|+.+.|+ |.+++.+|...|++|+.++++.... ....+++.+.++...+|++..+ |..+.....|.++
T Consensus 2 ~Ly~~~~~~-~~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~y 71 (77)
T cd03057 2 KLYYSPGAC-SLAPHIALEELGLPFELVRVDLRTK-TQKGADYLAINPKGQVPALVLDDGEVLTESAAILQY 71 (77)
T ss_pred EEEeCCCCc-hHHHHHHHHHcCCCceEEEEecccC-ccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHH
Confidence 588888774 8899999999999999988876421 1223567888899999999887 6767666666554
No 105
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.39 E-value=0.00052 Score=55.20 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=36.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCC-CchHHHH
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQD 59 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~-d~~e~~e 59 (228)
.|+||+.+.|.-|.+|+.+|+++||+|+++|+-.++ +..++..
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~ 45 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRP 45 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHH
Confidence 588999999999999999999999999999987654 4344443
No 106
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.37 E-value=0.00054 Score=53.57 Aligned_cols=41 Identities=17% Similarity=0.362 Sum_probs=35.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCC-CchHHH
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQ 58 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~-d~~e~~ 58 (228)
|+||+.+.|+-|.+|..+|+++|++|+++|+-..+ +..++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~ 42 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELR 42 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHH
Confidence 57999999999999999999999999999987664 444444
No 107
>PRK10026 arsenate reductase; Provisional
Probab=97.35 E-value=0.00066 Score=55.73 Aligned_cols=44 Identities=11% Similarity=0.265 Sum_probs=37.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCC-CchHHHH
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQD 59 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~-d~~e~~e 59 (228)
..|+||+.+.|.-|.+|..+|+++|++|+++|+-.++ +..++..
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~ 46 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVK 46 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHH
Confidence 4699999999999999999999999999999987664 4444444
No 108
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.34 E-value=0.00059 Score=53.56 Aligned_cols=41 Identities=10% Similarity=0.312 Sum_probs=35.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCC-CchHHH
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQ 58 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~-d~~e~~ 58 (228)
|++|+.+.|+-|.+|..+|+++|++|+++|+-..+ ...++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~ 42 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELE 42 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHH
Confidence 57999999999999999999999999999987764 334443
No 109
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.33 E-value=4.7e-05 Score=61.28 Aligned_cols=70 Identities=17% Similarity=0.310 Sum_probs=41.3
Q ss_pred ChhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHH----HHc-CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 2 NPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVF----QKL-KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 2 ~~~~~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L----~~~-gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
+++..+.++.+.+...|++++-+|||.|....-+| +.. +|++..+..|.+ .++-+.+.. .|...+|++++
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~---~el~~~~lt-~g~~~IP~~I~ 103 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDEN---KELMDQYLT-NGGRSIPTFIF 103 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH---HHHTTTTTT--SS--SSEEEE
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC---hhHHHHHHh-CCCeecCEEEE
Confidence 56777888888888899999999999998765554 444 677777777655 233233333 57899999855
No 110
>PRK15113 glutathione S-transferase; Provisional
Probab=97.27 E-value=0.00049 Score=58.56 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=59.5
Q ss_pred CCEEEEEcC--CChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcccc
Q psy1894 16 EKILIFSKS--YCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPV 91 (228)
Q Consensus 16 ~~VvIYtk~--~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v 91 (228)
..+++|+.+ .||+|.++..+|...||+|+.+.++.... ....+++.+++....||++.+||..|-....|..+-.
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~-~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAG-EHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLE 80 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCc-cccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 357899975 69999999999999999999998876421 1223568888999999999999887766667766644
No 111
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.25 E-value=0.0007 Score=48.45 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=50.8
Q ss_pred EcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhc
Q psy1894 22 SKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILE 88 (228)
Q Consensus 22 tk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~ 88 (228)
....||+|.+++-+|...|++|+.+.++.... +..+++.+.+....+|++..+|..+.....|..
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~--~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~ 70 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTP--DTRARILEFSPTGKVPVLVDGGIVVWDSLAICE 70 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc--cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHH
Confidence 35679999999999999999999998876431 123467888889999999988877766555543
No 112
>PRK10853 putative reductase; Provisional
Probab=97.24 E-value=0.00095 Score=52.97 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=35.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCC-CchHHHH
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQD 59 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~-d~~e~~e 59 (228)
|+||+.+.|.-|.+|..+|+++|++|+++|+-.++ +..++..
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~ 44 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQG 44 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHH
Confidence 78999999999999999999999999999987654 4444443
No 113
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=97.24 E-value=0.00049 Score=60.79 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=53.2
Q ss_pred CCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcccc
Q psy1894 24 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPV 91 (228)
Q Consensus 24 ~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v 91 (228)
..||+|.++..+|...|++|+.+.||.... .+++.+++...+||++..+|..|.....|.++-.
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~----~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRK----PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCC----CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 459999999999999999999999987531 2468889989999999888888877777776655
No 114
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.21 E-value=0.00087 Score=49.25 Aligned_cols=59 Identities=25% Similarity=0.398 Sum_probs=41.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc----CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--CCCcc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL----KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND--LEEKP 80 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~----gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~Ge~I 80 (228)
-|+.|+.+||+.|......|.+. +-.+....||.+.. ..+.+.++...+|++++ +|+..
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-----KELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-----HHHHHHTTCSSSSEEEEEETTEEE
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhcc-----chhhhccCCCCCCEEEEEECCcEE
Confidence 48889999999999998887543 32455555555421 34777889999999844 66543
No 115
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.19 E-value=0.0011 Score=50.17 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=42.3
Q ss_pred HHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHH----cCCC-CEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--CC
Q psy1894 7 QFVQDLIASEK--ILIFSKSYCPYCKMAKDVFQK----LKVT-PKTVELDHRDDGDSIQDVLLEITGARSQPSDND--LE 77 (228)
Q Consensus 7 ~~l~~ii~~~~--VvIYtk~~CP~C~~ak~~L~~----~gI~-y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~G 77 (228)
+.+..+++..+ |+.|..+|||.|......|.. ++-. .....+|.+. . ++.+.++...+|++++ +|
T Consensus 8 ~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~--~----~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 8 EEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT--I----DTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred HHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC--H----HHHHHcCCCcCcEEEEEECC
Confidence 44555565554 678999999999988777754 3311 2333444331 1 3567789999998744 66
Q ss_pred Cc
Q psy1894 78 EK 79 (228)
Q Consensus 78 e~ 79 (228)
+.
T Consensus 82 ~~ 83 (102)
T cd02948 82 EL 83 (102)
T ss_pred EE
Confidence 63
No 116
>PRK09381 trxA thioredoxin; Provisional
Probab=97.15 E-value=0.00077 Score=51.07 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=39.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHH----cCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--CCCcc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQK----LKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND--LEEKP 80 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~----~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~Ge~I 80 (228)
-++.|..+|||.|..+...|++ ++-.+....+|.+.. ..+...++..++|++++ +|+.+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN-----PGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC-----hhHHHhCCCCcCCEEEEEeCCeEE
Confidence 5778899999999998877754 333334444443321 13556679999999855 77755
No 117
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.15 E-value=0.0013 Score=49.95 Aligned_cols=63 Identities=17% Similarity=0.330 Sum_probs=41.8
Q ss_pred HHHHhcCCC--EEEEEcCCChhHHHHHHHHHHc------------CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccc
Q psy1894 9 VQDLIASEK--ILIFSKSYCPYCKMAKDVFQKL------------KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDN 74 (228)
Q Consensus 9 l~~ii~~~~--VvIYtk~~CP~C~~ak~~L~~~------------gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf 74 (228)
+.+.++..+ ++.|..+||++|......+++. .+.+-.+|+|.. ..+...+|..++|+++
T Consensus 11 f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-------~~l~~~~~v~~~Ptl~ 83 (108)
T cd02996 11 IDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-------SDIADRYRINKYPTLK 83 (108)
T ss_pred HHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-------HHHHHhCCCCcCCEEE
Confidence 334555543 6789999999999998777532 123333444443 2467778999999984
Q ss_pred c--CCC
Q psy1894 75 D--LEE 78 (228)
Q Consensus 75 I--~Ge 78 (228)
+ +|+
T Consensus 84 ~~~~g~ 89 (108)
T cd02996 84 LFRNGM 89 (108)
T ss_pred EEeCCc
Confidence 3 565
No 118
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.14 E-value=0.0013 Score=51.71 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHH------cCCCCEEEEccCCCCchHHHHHHHHHhCCC--CCCcc-c
Q psy1894 6 KQFVQDLIASEK--ILIFSKSYCPYCKMAKDVFQK------LKVTPKTVELDHRDDGDSIQDVLLEITGAR--SQPSD-N 74 (228)
Q Consensus 6 ~~~l~~ii~~~~--VvIYtk~~CP~C~~ak~~L~~------~gI~y~~idVd~~~d~~e~~eeL~~~sg~~--tVP~V-f 74 (228)
.+-++....+.+ ++.|+.+||++|......+.+ ....|-.++++.+++ . ....++.. .+|++ |
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~----~~~~~~~~g~~vPt~~f 82 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--P----KDEEFSPDGGYIPRILF 82 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--c----hhhhcccCCCccceEEE
Confidence 344555554443 556899999999999877765 334566677776532 1 12233333 49998 4
Q ss_pred c--CCCccc
Q psy1894 75 D--LEEKPK 81 (228)
Q Consensus 75 I--~Ge~IG 81 (228)
+ +|+.++
T Consensus 83 ~~~~Gk~~~ 91 (117)
T cd02959 83 LDPSGDVHP 91 (117)
T ss_pred ECCCCCCch
Confidence 4 566654
No 119
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.14 E-value=0.0017 Score=49.39 Aligned_cols=60 Identities=22% Similarity=-0.018 Sum_probs=40.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc-----CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--CCCcc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL-----KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND--LEEKP 80 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~-----gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~Ge~I 80 (228)
-|+-|..+||+.|......|.++ ++.+-.+|+|.+ .. ..++.+.++...+|++++ +|+.+
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~---~~-~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEN---DS-TMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCC---hH-HHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 47778999999999888777653 333444454443 12 235777789999998744 77644
No 120
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.13 E-value=0.0016 Score=47.50 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=39.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHc----CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--CCCc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKL----KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND--LEEK 79 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~----gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~Ge~ 79 (228)
.-++.|..+||++|..+...|.+. +-....+.+|.+.+ ..+.+.+|..++|++++ +|+.
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN-----PDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC-----HHHHHHcCCCcCCEEEEEeCCcE
Confidence 357788899999999887777653 32244444444321 24566789999999866 6653
No 121
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.08 E-value=0.0012 Score=51.49 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=41.5
Q ss_pred HHHHHhcCC---CEEEEEcCCChhHHHHHHHHH-------Hc--CCCCEEEEccCCCCch------HHHHHHHHHhCCCC
Q psy1894 8 FVQDLIASE---KILIFSKSYCPYCKMAKDVFQ-------KL--KVTPKTVELDHRDDGD------SIQDVLLEITGARS 69 (228)
Q Consensus 8 ~l~~ii~~~---~VvIYtk~~CP~C~~ak~~L~-------~~--gI~y~~idVd~~~d~~------e~~eeL~~~sg~~t 69 (228)
.+.+..+.. -++.|+.+|||+|......+. .+ ++.+-.++++.+.... .-..++...++..+
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 344455555 477899999999998875442 12 3334445555431000 00235777889999
Q ss_pred CCcc-ccCC
Q psy1894 70 QPSD-NDLE 77 (228)
Q Consensus 70 VP~V-fI~G 77 (228)
+|++ |+++
T Consensus 85 ~Pt~~~~~~ 93 (125)
T cd02951 85 TPTVIFLDP 93 (125)
T ss_pred ccEEEEEcC
Confidence 9996 5553
No 122
>PLN02473 glutathione S-transferase
Probab=97.07 E-value=0.00078 Score=56.86 Aligned_cols=74 Identities=9% Similarity=0.001 Sum_probs=57.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPV 91 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v 91 (228)
-+.+|+.+.||+|.++.-+|..+||+|+.+.++.... +....++..++...+||++..||..|.....|..+-.
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~-~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~ 75 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKL-EQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYA 75 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCccc-ccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHH
Confidence 4689999999999999999999999999988765421 1122345667888999999988887777777766544
No 123
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.04 E-value=0.0016 Score=48.05 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=39.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc----CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--CCCc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL----KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND--LEEK 79 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~----gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~Ge~ 79 (228)
-++.|..+||+.|......|.+. +-.+....||.+.. ..+...++...+|++++ +|+.
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ-----PQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-----HHHHHHcCCCCCCEEEEEeCCEE
Confidence 47888999999999998777653 22344445544421 24677789999999854 5653
No 124
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=97.03 E-value=0.00086 Score=47.34 Aligned_cols=69 Identities=12% Similarity=0.017 Sum_probs=52.6
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcc
Q psy1894 19 LIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 19 vIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
.+|+.+. +.|.+++.+|...|++|+.+.++.... ....+++.+.++..++|++..+|..+.....|..+
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~y 70 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPG-EQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILY 70 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCC-ccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 5777665 679999999999999999998875311 11134577788899999999888888777776654
No 125
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.03 E-value=0.00076 Score=51.06 Aligned_cols=63 Identities=17% Similarity=0.313 Sum_probs=36.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHH---c----CCCCEEEEccCCCCc---------------hHHHHHHHHHhCCCCCCcc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQK---L----KVTPKTVELDHRDDG---------------DSIQDVLLEITGARSQPSD 73 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~---~----gI~y~~idVd~~~d~---------------~e~~eeL~~~sg~~tVP~V 73 (228)
..|++|+.+|||+|..+...+.+ . .-.+..+.++.+... .....++...+|...+|++
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~ 86 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTI 86 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEE
Confidence 46889999999999988777653 1 113455544443211 0123467788899999999
Q ss_pred cc-C--CC
Q psy1894 74 ND-L--EE 78 (228)
Q Consensus 74 fI-~--Ge 78 (228)
++ | |+
T Consensus 87 ~~~d~~G~ 94 (112)
T PF13098_consen 87 VFLDKDGK 94 (112)
T ss_dssp EECTTTSC
T ss_pred EEEcCCCC
Confidence 44 4 55
No 126
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.00 E-value=0.0013 Score=49.26 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=41.2
Q ss_pred HHHHhcCCC--EEEEEcCCChhHHHHHHHHHHcC------CCCEEEEccCCCCchHHHHHHHHHhCCCCCCcc--ccCCC
Q psy1894 9 VQDLIASEK--ILIFSKSYCPYCKMAKDVFQKLK------VTPKTVELDHRDDGDSIQDVLLEITGARSQPSD--NDLEE 78 (228)
Q Consensus 9 l~~ii~~~~--VvIYtk~~CP~C~~ak~~L~~~g------I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V--fI~Ge 78 (228)
+.+.+...+ ++.|..+||++|......+.+.. +.+-.+|++.. ..+.+.++...+|++ |-+|+
T Consensus 11 f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~-------~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 11 FDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD-------RMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred HHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc-------HHHHHHcCCCccCEEEEEcCCC
Confidence 344444443 67799999999999888876542 22334555543 235666789999998 44665
No 127
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.98 E-value=0.0022 Score=48.79 Aligned_cols=55 Identities=18% Similarity=0.325 Sum_probs=36.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCC---CEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVT---PKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~---y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
-++.|..+||++|....-.|+++.-. ...+.||.+.. ...+...++...+|++++
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~----~~~l~~~~~V~~~PT~~l 78 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSI----KPSLLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCC----CHHHHHhcCCeecCEEEE
Confidence 47889999999999888777654211 23344444311 124677789999998843
No 128
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=96.98 E-value=0.0027 Score=45.77 Aligned_cols=63 Identities=19% Similarity=0.314 Sum_probs=43.3
Q ss_pred HHHHHhcCC--CEEEEEcCCChhHHHHHHHHHH----c--CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 8 FVQDLIASE--KILIFSKSYCPYCKMAKDVFQK----L--KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 8 ~l~~ii~~~--~VvIYtk~~CP~C~~ak~~L~~----~--gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
.+..++.+. -+++|+.+||++|..+...+.. + +-.+....++.+. ...+.+.+|...+|++++
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-----NNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-----hHHHHHhCCCCCCCEEEE
Confidence 445555555 6888999999999998887754 3 2345555555442 135677789999999844
No 129
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=96.96 E-value=0.0021 Score=49.55 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=43.0
Q ss_pred HHHHHHHhc----CCCEEEEEcCCChhHHHHHHHHHH----c---CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccc
Q psy1894 6 KQFVQDLIA----SEKILIFSKSYCPYCKMAKDVFQK----L---KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDN 74 (228)
Q Consensus 6 ~~~l~~ii~----~~~VvIYtk~~CP~C~~ak~~L~~----~---gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf 74 (228)
.++.+.++. ..-++.|..+||+.|......+.+ + ++.+-.+|++.. ..+...+|..++|+++
T Consensus 12 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-------~~l~~~~~V~~~Pt~~ 84 (111)
T cd02963 12 SQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-------RRLARKLGAHSVPAIV 84 (111)
T ss_pred HHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-------HHHHHHcCCccCCEEE
Confidence 344445543 234677999999999877666543 2 344445555543 2356677999999985
Q ss_pred --cCCCcc
Q psy1894 75 --DLEEKP 80 (228)
Q Consensus 75 --I~Ge~I 80 (228)
.+|+.+
T Consensus 85 i~~~g~~~ 92 (111)
T cd02963 85 GIINGQVT 92 (111)
T ss_pred EEECCEEE
Confidence 477643
No 130
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=96.94 E-value=0.0017 Score=48.69 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=37.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc----C--CCCEEEEccCCCCchHHHHHHHHHhCCCCCCccc--cCC
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL----K--VTPKTVELDHRDDGDSIQDVLLEITGARSQPSDN--DLE 77 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~----g--I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf--I~G 77 (228)
-++.|..+||+.|......+.+. + +.+-.+|++.. ..+.+.+|...+|+++ .+|
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY-------ESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-------HHHHHHcCCCcccEEEEEcCC
Confidence 47779999999999887777543 2 33344455443 2466778999999983 355
No 131
>PLN02378 glutathione S-transferase DHAR1
Probab=96.93 E-value=0.001 Score=56.79 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=51.8
Q ss_pred CCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcccc
Q psy1894 24 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPV 91 (228)
Q Consensus 24 ~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v 91 (228)
..||+|.++.-+|+..|++|+.+.||... + .+++.+++...+||++..||..|.....|..+-.
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~---~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~ 81 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSD-K---PQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILE 81 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCccc-C---CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 45999999999999999999999888752 1 2357888999999999988887766666666544
No 132
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=96.92 E-value=0.0025 Score=50.10 Aligned_cols=59 Identities=7% Similarity=-0.014 Sum_probs=39.8
Q ss_pred hcCC--CEEEEEcCCChhHHHHHHHHHHcC------CCCEEEEccCCCCchHHHHHHH-HHhCCCCCCcc--ccCCC
Q psy1894 13 IASE--KILIFSKSYCPYCKMAKDVFQKLK------VTPKTVELDHRDDGDSIQDVLL-EITGARSQPSD--NDLEE 78 (228)
Q Consensus 13 i~~~--~VvIYtk~~CP~C~~ak~~L~~~g------I~y~~idVd~~~d~~e~~eeL~-~~sg~~tVP~V--fI~Ge 78 (228)
+... -++.|..+||++|+.+.-.|++.. +.+-.+|++.+. .+. +.++..++|++ |.+|+
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~-------~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ-------GKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh-------HHHHHhcCCcccCEEEEEECCc
Confidence 4444 477899999999999988887653 233445555441 244 46788999998 55665
No 133
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=96.84 E-value=0.00091 Score=56.09 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=56.9
Q ss_pred EEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhccccc
Q psy1894 20 IFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPVE 92 (228)
Q Consensus 20 IYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v~ 92 (228)
+|+...||+|.+++.+|...||+|+.+.++....+....+++.+++...++|++.+||..+.....|..+-..
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~ 74 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEE 74 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHH
Confidence 7888899999999999999999999988874211011124577888899999999999888777777766543
No 134
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=96.84 E-value=0.003 Score=47.45 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=36.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc----CCCCEE--EEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL----KVTPKT--VELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~----gI~y~~--idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
-++.|..+||++|......|.+. .-.+.. ++++.++. ..+...++...+|++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~-----~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN-----KPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc-----HHHHHHcCCCcCCEEEE
Confidence 58889999999999887766544 222333 44444211 24666789999999854
No 135
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.83 E-value=0.0027 Score=52.55 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=38.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHc-------CCCCEEEEccCCCCchHHHHHHHHHhCCCC------CCcc--ccCCCccc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKL-------KVTPKTVELDHRDDGDSIQDVLLEITGARS------QPSD--NDLEEKPK 81 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~-------gI~y~~idVd~~~d~~e~~eeL~~~sg~~t------VP~V--fI~Ge~IG 81 (228)
|+.|..+|||.|......|++. ++.+-.+|+|.. + .+.+.++..+ +|++ |.+|+.++
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~---~----~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF---P----NVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC---H----HHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 8899999999999888777543 234444555554 2 3455556555 9987 55887664
No 136
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.82 E-value=0.0023 Score=47.02 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=41.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc----CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcc--ccCCCcc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL----KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSD--NDLEEKP 80 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~----gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V--fI~Ge~I 80 (228)
-++.|..+||+.|..+...|++. ...+..+.+|.+.. .++...++...+|++ |.+|+.+
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL-----PEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC-----HHHHHhcCCccccEEEEEECCEEE
Confidence 36789999999999998888753 33455566665421 246677899999987 4466643
No 137
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.78 E-value=0.0032 Score=46.23 Aligned_cols=54 Identities=20% Similarity=0.272 Sum_probs=35.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc----CC--CCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL----KV--TPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~----gI--~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
-+++|+.+||+.|......|... .- .+....+|.+. ...+.+.+|...+|++++
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-----EKDLASRFGVSGFPTIKF 75 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-----hHHHHHhCCCCcCCEEEE
Confidence 48999999999999876666542 11 13334444331 134667789999999843
No 138
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=96.76 E-value=0.0017 Score=58.09 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=52.5
Q ss_pred cCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcccc
Q psy1894 23 KSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPV 91 (228)
Q Consensus 23 k~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v 91 (228)
...||+|.++.-+|...|++|+.+.|+.... .+++.+++....||++..+|..|.....|..+-.
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~----~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~ 134 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNK----PEWFLKISPEGKVPVVKLDEKWVADSDVITQALE 134 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcC----CHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 4569999999999999999999988876421 2457788889999999999887877777766644
No 139
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=96.75 E-value=0.0059 Score=45.15 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=35.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc----CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL----KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~----gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
-+++|..+||+.|......|.+. .-.+....+|.+.. ..+...+|...+|++++
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH-----QSLAQQYGVRGFPTIKV 78 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch-----HHHHHHCCCCccCEEEE
Confidence 37788999999999987766542 22234444443321 24566779999998833
No 140
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.72 E-value=0.0016 Score=50.22 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=41.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCC---CEEEEccCCCCchHHHHHHHHHhCCCCCCcc--ccCCCcccch
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVT---PKTVELDHRDDGDSIQDVLLEITGARSQPSD--NDLEEKPKAE 83 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~---y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V--fI~Ge~IGG~ 83 (228)
|+.|..+||+.|..+...|+++.-. ...+.||.+. . ++.+.++..++|++ |-+|+.++..
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~----~--~l~~~~~i~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK----A--FLVNYLDIKVLPTLLVYKNGELIDNI 92 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh----h--HHHHhcCCCcCCEEEEEECCEEEEEE
Confidence 5679999999999998888754222 2444555441 1 57777899999998 5588866443
No 141
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.69 E-value=0.0022 Score=50.62 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=44.0
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHHcCCC----CEEEEccCCCCchHHHHHHHHHhCCCCCCcc--ccCCCcccc
Q psy1894 15 SEKILIFSKSY--CPYCKMAKDVFQKLKVT----PKTVELDHRDDGDSIQDVLLEITGARSQPSD--NDLEEKPKA 82 (228)
Q Consensus 15 ~~~VvIYtk~~--CP~C~~ak~~L~~~gI~----y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V--fI~Ge~IGG 82 (228)
...|+.|+.+| ||.|..+.-+|.+.--. ...+.+|.+.. .++...++..++|++ |-||+.++.
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~-----~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE-----QALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC-----HHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 34688899996 99999999888765322 23334443321 268888999999998 448886654
No 142
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=96.64 E-value=0.0046 Score=45.63 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHc----CC---CCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--CCC
Q psy1894 15 SEKILIFSKSYCPYCKMAKDVFQKL----KV---TPKTVELDHRDDGDSIQDVLLEITGARSQPSDND--LEE 78 (228)
Q Consensus 15 ~~~VvIYtk~~CP~C~~ak~~L~~~----gI---~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~Ge 78 (228)
..-++.|..+||+.|......|.+. +- .+....+|.+.. ..+.+.++...+|++++ +|+
T Consensus 17 ~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 17 GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-----RELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-----hhhHhhcCCCcCCEEEEEeCCC
Confidence 3457789999999999876666433 21 234444444321 13556678899999743 555
No 143
>PRK10996 thioredoxin 2; Provisional
Probab=96.57 E-value=0.008 Score=48.37 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=45.2
Q ss_pred HHHHHHhcCC--CEEEEEcCCChhHHHHHHHHHH----cCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--CCC
Q psy1894 7 QFVQDLIASE--KILIFSKSYCPYCKMAKDVFQK----LKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND--LEE 78 (228)
Q Consensus 7 ~~l~~ii~~~--~VvIYtk~~CP~C~~ak~~L~~----~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~Ge 78 (228)
+.+.++++.. -++.|+.+||++|......|.. .+-.+..+.+|.+.. ..+.+.++..++|++++ +|+
T Consensus 43 ~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-----~~l~~~~~V~~~Ptlii~~~G~ 117 (139)
T PRK10996 43 ETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-----RELSARFRIRSIPTIMIFKNGQ 117 (139)
T ss_pred HHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-----HHHHHhcCCCccCEEEEEECCE
Confidence 3445555544 4788999999999987766654 333455555554422 24677789999999855 666
Q ss_pred cc
Q psy1894 79 KP 80 (228)
Q Consensus 79 ~I 80 (228)
.+
T Consensus 118 ~v 119 (139)
T PRK10996 118 VV 119 (139)
T ss_pred EE
Confidence 33
No 144
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=96.52 E-value=0.0091 Score=45.59 Aligned_cols=54 Identities=17% Similarity=0.419 Sum_probs=35.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHc-------CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKL-------KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDN 74 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~-------gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf 74 (228)
.-++.|..+|||+|......|.+. ++.+-.+++|.+. . ....+.++...+|+++
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~---~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--R---EFAKEELQLKSFPTIL 83 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--h---hhHHhhcCCCcCCEEE
Confidence 468889999999999988877653 2334444555421 1 1123346889999984
No 145
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=96.51 E-value=0.005 Score=45.37 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=36.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHH----cC--CCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQK----LK--VTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~----~g--I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
-++.|..+|||+|......+.+ +. -.+....+|.+.. ...+.+.++..++|++++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA----NKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc----chhhHHhCCCCCcCEEEE
Confidence 4788999999999988777654 22 2345555554420 124566678999999854
No 146
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.49 E-value=0.0068 Score=46.88 Aligned_cols=45 Identities=13% Similarity=0.363 Sum_probs=30.6
Q ss_pred EEcCCChhHHHHHHHHHHcCCCCEEEEccCCC-CchHHHHHHHHHhC
Q psy1894 21 FSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQDVLLEITG 66 (228)
Q Consensus 21 Ytk~~CP~C~~ak~~L~~~gI~y~~idVd~~~-d~~e~~eeL~~~sg 66 (228)
|+.+.|.-|.+|.++|+++|++|+++|+...+ +..++. .+....|
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~-~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELR-ELLSKLG 46 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHH-HHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHH-HHHHHhc
Confidence 88999999999999999999999999998764 333443 3444445
No 147
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.47 E-value=0.0075 Score=52.52 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCCEEEEEcCCChhHHHHHHHH----HHcCCCCEEEEccCCCCc--hH--HHHHHHHHhCCCCCCcccc
Q psy1894 6 KQFVQDLIASEKILIFSKSYCPYCKMAKDVF----QKLKVTPKTVELDHRDDG--DS--IQDVLLEITGARSQPSDND 75 (228)
Q Consensus 6 ~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L----~~~gI~y~~idVd~~~d~--~e--~~eeL~~~sg~~tVP~VfI 75 (228)
.+.|..+....-+++|..++||+|+...-+| +++|+..-.|++|..+.. +. .-..+.+..|...+|.+|+
T Consensus 112 ~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred HHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 5677888888899999999999998766555 567999999999863210 00 0123556678899999976
No 148
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.46 E-value=0.0066 Score=51.11 Aligned_cols=58 Identities=10% Similarity=0.013 Sum_probs=40.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCC---CCEEEEccCCCCchHHHHHHHHHhCCCCCCcc--ccCCCccc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKV---TPKTVELDHRDDGDSIQDVLLEITGARSQPSD--NDLEEKPK 81 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI---~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V--fI~Ge~IG 81 (228)
|+-|..+|||.|..+...|..+-- ...++.|+.+. . .+...++...+|++ |-+|+.++
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~----~--~l~~~f~v~~vPTlllyk~G~~v~ 149 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA----T--GASDEFDTDALPALLVYKGGELIG 149 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc----h--hhHHhCCCCCCCEEEEEECCEEEE
Confidence 555889999999988877765421 24555555541 1 46777899999987 45888664
No 149
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0042 Score=52.48 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=57.5
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCC-cccchhhhhcccc
Q psy1894 19 LIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEE-KPKAEKKILEIPV 91 (228)
Q Consensus 19 vIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge-~IGG~d~L~~~~v 91 (228)
++|+.+.+|+|.++.-.|..+|++|+.+.|+... ....+++..+++...||++..+|- .|-....|..+-.
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~--~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~ 73 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA--EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLA 73 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCccc--ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHH
Confidence 6788899999999999999999999999998874 122356888899999999998875 5666666666644
No 150
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=96.45 E-value=0.013 Score=46.81 Aligned_cols=73 Identities=14% Similarity=0.277 Sum_probs=41.9
Q ss_pred HHHHhcCC-CEEE-EEcCCChhHHHHHH-HHHH------cCCCCEEEEccCCCCchHHHHHH----HHHhCCCCCCcccc
Q psy1894 9 VQDLIASE-KILI-FSKSYCPYCKMAKD-VFQK------LKVTPKTVELDHRDDGDSIQDVL----LEITGARSQPSDND 75 (228)
Q Consensus 9 l~~ii~~~-~VvI-Ytk~~CP~C~~ak~-~L~~------~gI~y~~idVd~~~d~~e~~eeL----~~~sg~~tVP~VfI 75 (228)
+....+++ +|.| |+.+||++|+.... .+.. +.-.|..+.+|.+.. +++...+ ...+|...+|++.+
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~-~~~~~~~~~~~~~~~~~~G~Pt~vf 86 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER-PDVDKIYMNAAQAMTGQGGWPLNVF 86 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC-cHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 34444444 4444 88999999998854 3332 233466655554422 3333222 22458889999854
Q ss_pred ---CCCcccc
Q psy1894 76 ---LEEKPKA 82 (228)
Q Consensus 76 ---~Ge~IGG 82 (228)
+|+.+-+
T Consensus 87 l~~~G~~~~~ 96 (124)
T cd02955 87 LTPDLKPFFG 96 (124)
T ss_pred ECCCCCEEee
Confidence 5676643
No 151
>PLN02395 glutathione S-transferase
Probab=96.41 E-value=0.0053 Score=51.73 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=56.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPV 91 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v 91 (228)
.+++|+.++|+ |.++.-+|...|++|+.+.++.... ....+++.+++...+||++..+|..+.....|..+-.
T Consensus 2 ~~~ly~~~~~~-~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~ 74 (215)
T PLN02395 2 VLKVYGPAFAS-PKRALVTLIEKGVEFETVPVDLMKG-EHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYA 74 (215)
T ss_pred eEEEEcCCcCc-HHHHHHHHHHcCCCceEEEeccccC-CcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 47899977764 8999999999999999988876421 1122467888889999999988877777777766644
No 152
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=96.41 E-value=0.0058 Score=48.55 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=41.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCC------CCEEEEccCCCCchHHHHHHHHHhCCCCCCcc--ccCCCcc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKV------TPKTVELDHRDDGDSIQDVLLEITGARSQPSD--NDLEEKP 80 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI------~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V--fI~Ge~I 80 (228)
|+=|+.+|||.|...-.+|.++-- .+-.+|+|+. .++.+.++....|+. |-||+||
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev-------~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV-------PVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecccc-------HHHHHhcCceeCcEEEEEECCcEE
Confidence 556999999999999888887643 2333455544 247777888889986 5588887
No 153
>KOG0406|consensus
Probab=96.40 E-value=0.0086 Score=53.00 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=61.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHh-CCCCCCccccCCCcccchhhhhccccccc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEIT-GARSQPSDNDLEEKPKAEKKILEIPVEAV 94 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~s-g~~tVP~VfI~Ge~IGG~d~L~~~~v~~v 94 (228)
..|.+|+.-.|||..+++-+|+..||+|+.+++|-.. .+ +-|.+.+ -...||++.-||+.|+-.-.+.++-+..-
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks---~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w 83 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN-KS---EWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETW 83 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC-CC---HHHHHhccccccCCEEEECCceehhhHHHHHHHHhhc
Confidence 6799999999999999999999999999999988752 23 3466666 57899999999999976666677766443
No 154
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.38 E-value=0.005 Score=49.03 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=35.6
Q ss_pred EEEEEc-------CCChhHHHHHHHHH----HcC--CCCEEEEccCCCCchHHHHHHHHHhCCC-CCCcccc
Q psy1894 18 ILIFSK-------SYCPYCKMAKDVFQ----KLK--VTPKTVELDHRDDGDSIQDVLLEITGAR-SQPSDND 75 (228)
Q Consensus 18 VvIYtk-------~~CP~C~~ak~~L~----~~g--I~y~~idVd~~~d~~e~~eeL~~~sg~~-tVP~VfI 75 (228)
|+.|.. +|||.|..+.-.|+ ++. +.+-.+|++..+.=.+....+...++.. .+|++++
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence 666888 89999998766654 443 4455556654320000113466666777 9999844
No 155
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.36 E-value=0.0049 Score=46.47 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=35.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHH----c---CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQK----L---KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~----~---gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
.-++.|..+|||+|......|.+ + +..+....+|.+.. ..+.+.++..++|++++
T Consensus 17 ~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 17 IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-----SSIASEFGVRGYPTIKL 78 (104)
T ss_pred eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-----HhHHhhcCCccccEEEE
Confidence 35778899999999977766643 2 33344433443311 24566789999999833
No 156
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.36 E-value=0.0059 Score=53.61 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=44.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc---CCCCEEEEcc---CCC-------------Cc-------------------h--H
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL---KVTPKTVELD---HRD-------------DG-------------------D--S 56 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~---gI~y~~idVd---~~~-------------d~-------------------~--e 56 (228)
.|++|+-+.||||+++...+.++ ||.+.++.+. .++ |. . +
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~v~ 189 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVDIA 189 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccchHH
Confidence 58999999999999999988875 4544443221 111 00 0 0
Q ss_pred HHHHHHHHhCCCCCCcccc-CCCcccchh
Q psy1894 57 IQDVLLEITGARSQPSDND-LEEKPKAEK 84 (228)
Q Consensus 57 ~~eeL~~~sg~~tVP~VfI-~Ge~IGG~d 84 (228)
...++.+..|...+|++++ ||+.+.|+-
T Consensus 190 ~~~~la~~lgi~gTPtiv~~~G~~~~G~~ 218 (232)
T PRK10877 190 DHYALGVQFGVQGTPAIVLSNGTLVPGYQ 218 (232)
T ss_pred HhHHHHHHcCCccccEEEEcCCeEeeCCC
Confidence 1122344457788999887 999888853
No 157
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.31 E-value=0.0079 Score=48.70 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=41.8
Q ss_pred HHHhcCC--CEEEEEcCCChhHHHHHHHHHHc----C--CCCEEEEccCCCCchHHHHHHHHHhCCCCCCccc-c--CCC
Q psy1894 10 QDLIASE--KILIFSKSYCPYCKMAKDVFQKL----K--VTPKTVELDHRDDGDSIQDVLLEITGARSQPSDN-D--LEE 78 (228)
Q Consensus 10 ~~ii~~~--~VvIYtk~~CP~C~~ak~~L~~~----g--I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf-I--~Ge 78 (228)
...+... -|+.|..+||++|......|.++ + +.+-.+++|... . ..+...++...+|+++ + +|+
T Consensus 14 ~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~----~-~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 14 EVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK----W-LPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred HHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc----c-HHHHHHcCCCCCCEEEEECCCCC
Confidence 3444443 46678999999999888777643 3 334445555431 1 2456678999999984 4 466
Q ss_pred cc
Q psy1894 79 KP 80 (228)
Q Consensus 79 ~I 80 (228)
.+
T Consensus 89 ~v 90 (142)
T cd02950 89 EE 90 (142)
T ss_pred EE
Confidence 44
No 158
>KOG1422|consensus
Probab=96.30 E-value=0.0077 Score=52.62 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=58.0
Q ss_pred CChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhccccccccCcc
Q psy1894 25 YCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPVEAVAKPR 98 (228)
Q Consensus 25 ~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v~~v~k~~ 98 (228)
.||+|+++...|...|++|....||...- .+.|.++++...+|.+.+||+.+-+.+.|.+.--+.++-++
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~k----p~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~ 89 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRK----PEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPK 89 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCC----cHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCC
Confidence 49999999999999999998877776521 25689999999999999999999888888877666565555
No 159
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0092 Score=54.59 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCC-EEEEEcCCChhHHHHHHHHHHc----CCCC--EEEEccCCCCchHHHHHHHHHhCCCCCCcc--ccC
Q psy1894 6 KQFVQDLIASEK-ILIFSKSYCPYCKMAKDVFQKL----KVTP--KTVELDHRDDGDSIQDVLLEITGARSQPSD--NDL 76 (228)
Q Consensus 6 ~~~l~~ii~~~~-VvIYtk~~CP~C~~ak~~L~~~----gI~y--~~idVd~~~d~~e~~eeL~~~sg~~tVP~V--fI~ 76 (228)
.+.|.+.-...+ ++.|-.|||+.|....-.|++. +-.| -.+|+|.++ .+....|..++|+| |++
T Consensus 34 e~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p-------~vAaqfgiqsIPtV~af~d 106 (304)
T COG3118 34 EQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP-------MVAAQFGVQSIPTVYAFKD 106 (304)
T ss_pred HHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcch-------hHHHHhCcCcCCeEEEeeC
Confidence 344444444545 4557789999999998888764 3334 445666652 35667899999998 899
Q ss_pred CCcccchhhh
Q psy1894 77 EEKPKAEKKI 86 (228)
Q Consensus 77 Ge~IGG~d~L 86 (228)
|+.|-|+...
T Consensus 107 GqpVdgF~G~ 116 (304)
T COG3118 107 GQPVDGFQGA 116 (304)
T ss_pred CcCccccCCC
Confidence 9988765444
No 160
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=96.19 E-value=0.0085 Score=44.25 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=36.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc----C----CCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--CCC
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL----K----VTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND--LEE 78 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~----g----I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~Ge 78 (228)
-++.|..+|||+|..+...+... . +.+-.+|++.+.. ..+...+|...+|++++ +|+
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH-----DALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc-----HHHHHhCCCccccEEEEEeCCC
Confidence 47889999999999886555432 2 2333445544211 24666779999999844 555
No 161
>PRK10357 putative glutathione S-transferase; Provisional
Probab=96.15 E-value=0.0075 Score=50.38 Aligned_cols=67 Identities=10% Similarity=-0.005 Sum_probs=52.1
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccc-cCCCcccchhhhhcc
Q psy1894 19 LIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDN-DLEEKPKAEKKILEI 89 (228)
Q Consensus 19 vIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf-I~Ge~IGG~d~L~~~ 89 (228)
.+|+.+.||++.++.-+|...|++|+.++++..... ..+.+.+...+||++. .+|..+-....|..+
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~----~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~y 69 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNAD----NGVAQYNPLGKVPALVTEEGECWFDSPIIAEY 69 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCc----hhhhhcCCccCCCeEEeCCCCeeecHHHHHHH
Confidence 689999999999999999999999999888764221 2355668889999998 466666556666554
No 162
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=96.13 E-value=0.014 Score=42.30 Aligned_cols=67 Identities=9% Similarity=-0.055 Sum_probs=47.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHH--HhCCCCCCccccCCCcccchhhhhc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLE--ITGARSQPSDNDLEEKPKAEKKILE 88 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~--~sg~~tVP~VfI~Ge~IGG~d~L~~ 88 (228)
.++|..+.++.|..++.+|...|++|+.+.++.. +... .+.. ......+|++.+||..+.....|..
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~ 70 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILN 70 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHH
Confidence 4789999999999999999999999999988753 1111 1111 1135699999888876655555543
No 163
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=96.12 E-value=0.011 Score=48.65 Aligned_cols=55 Identities=7% Similarity=0.039 Sum_probs=36.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCC------CCEEEEccCCCCchHHHHHHHHHhCCCCC-Ccc-cc-CCC
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKV------TPKTVELDHRDDGDSIQDVLLEITGARSQ-PSD-ND-LEE 78 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI------~y~~idVd~~~d~~e~~eeL~~~sg~~tV-P~V-fI-~Ge 78 (228)
-|+-|+.+|||.|...--+|++..- .+-.+|||.. +++...++..+. |++ |. +|+
T Consensus 26 VVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~-------~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 26 VVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV-------PDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC-------HHHHHHcCccCCCcEEEEEECCe
Confidence 3577999999999999888876532 2244566655 247777787755 455 44 444
No 164
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0055 Score=52.57 Aligned_cols=68 Identities=15% Similarity=0.273 Sum_probs=53.4
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccc-cCCCcccchhhhhcccc
Q psy1894 19 LIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDN-DLEEKPKAEKKILEIPV 91 (228)
Q Consensus 19 vIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf-I~Ge~IGG~d~L~~~~v 91 (228)
.+|.-+.||||.+|+.++-=.+||++.+-++.|+++.. -..-|+..||.+. -+|++++-.=||..+-.
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp-----~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d 70 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETP-----IRMIGQKQVPILQKEDGRAMPESLDIVHYVD 70 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCcccCh-----hhhhcccccceEEccccccchhhhHHHHHHH
Confidence 46788999999999999999999999998887754332 2334999999985 47888887767766644
No 165
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=96.09 E-value=0.011 Score=50.03 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=53.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc-----CCC--cccchhhhhccc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND-----LEE--KPKAEKKILEIP 90 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI-----~Ge--~IGG~d~L~~~~ 90 (228)
+++|..+ +|+|.++..+|..+|++|+.++++.... ....+++.+++....||++.. ||. .|-....|..+-
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKG-GQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCccc-ccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 5788876 6999999999999999999998876422 222346888999999999987 343 354555555543
Q ss_pred c
Q psy1894 91 V 91 (228)
Q Consensus 91 v 91 (228)
.
T Consensus 80 ~ 80 (215)
T PRK13972 80 A 80 (215)
T ss_pred H
Confidence 3
No 166
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.08 E-value=0.014 Score=52.49 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=46.2
Q ss_pred HHHHHHhcCCCEEEEEcCCChhHHHHHHHHH----HcCCCCEEEEccCCCCc--hH--HHHHHHHHhCCCCCCcccc
Q psy1894 7 QFVQDLIASEKILIFSKSYCPYCKMAKDVFQ----KLKVTPKTVELDHRDDG--DS--IQDVLLEITGARSQPSDND 75 (228)
Q Consensus 7 ~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~----~~gI~y~~idVd~~~d~--~e--~~eeL~~~sg~~tVP~VfI 75 (228)
..+..+....-++.|..+|||+|....-.|. ++|+.+-.+++|..... +. .-..+.+.+|...+|++|+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 4455666666788899999999997766664 56776666777764210 00 0023566779999999965
No 167
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.00 E-value=0.013 Score=50.24 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCC----EEEEEcCCChhHHHHHHHHHHcCC---CCEEEEccCCCCchHHHHHHHHHhCCCCCCccc--cC
Q psy1894 6 KQFVQDLIASEK----ILIFSKSYCPYCKMAKDVFQKLKV---TPKTVELDHRDDGDSIQDVLLEITGARSQPSDN--DL 76 (228)
Q Consensus 6 ~~~l~~ii~~~~----VvIYtk~~CP~C~~ak~~L~~~gI---~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf--I~ 76 (228)
.+++..+....+ |+-|+.+||+.|..+...|..+-- ...++.|+.+ . ....++...+|+++ -|
T Consensus 90 ~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad----~----~~~~~~i~~lPTlliyk~ 161 (192)
T cd02988 90 PDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST----Q----CIPNYPDKNLPTILVYRN 161 (192)
T ss_pred HHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH----H----hHhhCCCCCCCEEEEEEC
Confidence 456666665432 455899999999999888876532 2344555443 1 23567899999984 48
Q ss_pred CCccc
Q psy1894 77 EEKPK 81 (228)
Q Consensus 77 Ge~IG 81 (228)
|+.++
T Consensus 162 G~~v~ 166 (192)
T cd02988 162 GDIVK 166 (192)
T ss_pred CEEEE
Confidence 87553
No 168
>PTZ00062 glutaredoxin; Provisional
Probab=95.94 E-value=0.01 Score=51.47 Aligned_cols=68 Identities=18% Similarity=0.055 Sum_probs=49.1
Q ss_pred CChhHHHHHHHHhcC--C-CEEEEEcCCChhHHHHHHHHHHcCC---CCEEEEccCCCCchHHHHHHHHHhCCCCCCccc
Q psy1894 1 MNPASKQFVQDLIAS--E-KILIFSKSYCPYCKMAKDVFQKLKV---TPKTVELDHRDDGDSIQDVLLEITGARSQPSDN 74 (228)
Q Consensus 1 ~~~~~~~~l~~ii~~--~-~VvIYtk~~CP~C~~ak~~L~~~gI---~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf 74 (228)
|+-...+.+.++++. . .|+.|+.+|||.|..+..+|.++-- .+.++.|+.+ ++...||++.
T Consensus 1 ~~~~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------~~V~~vPtfv 67 (204)
T PTZ00062 1 MNFIKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------DANNEYGVFE 67 (204)
T ss_pred CCCCCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------cCcccceEEE
Confidence 556667788888883 3 5666779999999999988877643 3566666532 7889999873
Q ss_pred --cCCCccc
Q psy1894 75 --DLEEKPK 81 (228)
Q Consensus 75 --I~Ge~IG 81 (228)
=||+.|+
T Consensus 68 ~~~~g~~i~ 76 (204)
T PTZ00062 68 FYQNSQLIN 76 (204)
T ss_pred EEECCEEEe
Confidence 3777554
No 169
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.78 E-value=0.017 Score=48.70 Aligned_cols=31 Identities=23% Similarity=0.580 Sum_probs=24.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHH--cCCCCEEE
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQK--LKVTPKTV 46 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~--~gI~y~~i 46 (228)
..|++|+-+.||||.++...+.. .++.+..+
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~ 111 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKPNADGVTVRIF 111 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhhccCceEEEEE
Confidence 47999999999999999999974 34444444
No 170
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=95.77 E-value=0.017 Score=42.55 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=33.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcC------CCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLK------VTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~g------I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
-++.|..+||++|......+.+.. ..+....+|.+. .++...++..++|++++
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~------~~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA------NDVPSEFVVDGFPTILF 79 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc------hhhhhhccCCCCCEEEE
Confidence 467799999999998887776542 123344444332 12334456689998854
No 171
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=95.73 E-value=0.016 Score=51.00 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=38.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHc----CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--CCC
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKL----KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND--LEE 78 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~----gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~Ge 78 (228)
.-++.|..+|||+|......+++. +-......+|.+.. ..+.+.++...+|++++ +|+
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-----~~l~~~~~I~~~PTl~~f~~G~ 117 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-----LNLAKRFAIKGYPTLLLFDKGK 117 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-----HHHHHHcCCCcCCEEEEEECCE
Confidence 347889999999999888877653 22233334443321 24677789999999844 554
No 172
>PRK11752 putative S-transferase; Provisional
Probab=95.70 E-value=0.014 Score=51.79 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=56.4
Q ss_pred HhcCCCEEEEEcCCChhHHHHHHHHHHc------CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCC----Cccc
Q psy1894 12 LIASEKILIFSKSYCPYCKMAKDVFQKL------KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLE----EKPK 81 (228)
Q Consensus 12 ii~~~~VvIYtk~~CP~C~~ak~~L~~~------gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~G----e~IG 81 (228)
....+++++|+. .||+|.++..+|..+ |++|+.+.|+.... ....+++.+++...+||++..++ ..+.
T Consensus 39 ~~~~~~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~-~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ 116 (264)
T PRK11752 39 PVGKHPLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEG-DQFSSGFVEINPNSKIPALLDRSGNPPIRVF 116 (264)
T ss_pred CCCCCCeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCccc-cccCHHHHhhCCCCCCCEEEeCCCCCCeEEE
Confidence 345568999995 599999999999997 88999888765321 12235688889999999998753 2455
Q ss_pred chhhhhcccc
Q psy1894 82 AEKKILEIPV 91 (228)
Q Consensus 82 G~d~L~~~~v 91 (228)
....|..+-.
T Consensus 117 ES~AIl~YL~ 126 (264)
T PRK11752 117 ESGAILLYLA 126 (264)
T ss_pred cHHHHHHHHH
Confidence 5555555443
No 173
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=95.67 E-value=0.024 Score=48.45 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=38.9
Q ss_pred CEEEEEcCCChhHHHH----HHHHHHcCCCCEEEEccCCCC-----c-hHHHHHHHHHhCC--CCCCcccc
Q psy1894 17 KILIFSKSYCPYCKMA----KDVFQKLKVTPKTVELDHRDD-----G-DSIQDVLLEITGA--RSQPSDND 75 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~a----k~~L~~~gI~y~~idVd~~~d-----~-~e~~eeL~~~sg~--~tVP~VfI 75 (228)
++++|..+|||+|+.. +++.+++|+.+--+.+|...+ . +.-...+...+|. ..+|+.|+
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfL 142 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFL 142 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEE
Confidence 4899999999999977 666667787776677765410 0 0001234555663 68898865
No 174
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=95.67 E-value=0.015 Score=46.33 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=42.6
Q ss_pred HHHHhcCC--CEEEEEcCC-Ch--hHH----------HHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcc
Q psy1894 9 VQDLIASE--KILIFSKSY-CP--YCK----------MAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSD 73 (228)
Q Consensus 9 l~~ii~~~--~VvIYtk~~-CP--~C~----------~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V 73 (228)
..+.+.++ .+++|-.+| |+ +|+ .|...|+..++.+-.+|+|.+ ..|...+|..++|++
T Consensus 19 F~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~-------~~La~~~~I~~iPTl 91 (120)
T cd03065 19 YKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD-------AKVAKKLGLDEEDSI 91 (120)
T ss_pred HHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC-------HHHHHHcCCccccEE
Confidence 33444444 566666666 44 497 233444455777777888766 257888999999998
Q ss_pred --ccCCCcc
Q psy1894 74 --NDLEEKP 80 (228)
Q Consensus 74 --fI~Ge~I 80 (228)
|-||+.+
T Consensus 92 ~lfk~G~~v 100 (120)
T cd03065 92 YVFKDDEVI 100 (120)
T ss_pred EEEECCEEE
Confidence 6688855
No 175
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.55 E-value=0.032 Score=39.74 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=40.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHc------CCCCEEEEccCCCC--------------------chHHHH-----HHHHHhC
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKL------KVTPKTVELDHRDD--------------------GDSIQD-----VLLEITG 66 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~------gI~y~~idVd~~~d--------------------~~e~~e-----eL~~~sg 66 (228)
|.+|..+.||+|..+...|.+. ++.+..+.+..... ..++.+ .+....|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 5789999999999998888774 34455554433221 011111 1233457
Q ss_pred CCCCCccccCC-Cccc
Q psy1894 67 ARSQPSDNDLE-EKPK 81 (228)
Q Consensus 67 ~~tVP~VfI~G-e~IG 81 (228)
...+|+++++| .++|
T Consensus 81 ~~g~Pt~v~~~~~~~~ 96 (98)
T cd02972 81 VTGTPTFVVNGEKYSG 96 (98)
T ss_pred CCCCCEEEECCEEcCC
Confidence 89999999999 4443
No 176
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=95.48 E-value=0.045 Score=42.98 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=15.8
Q ss_pred CEEEEEcCCChhHHHHHHHHH
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQ 37 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~ 37 (228)
-++.|..+|||.|......|.
T Consensus 20 vll~F~atwC~~C~~~~p~l~ 40 (132)
T cd02964 20 VGLYFSASWCPPCRAFTPKLV 40 (132)
T ss_pred EEEEEECCCCchHHHHHHHHH
Confidence 456677899999998665554
No 177
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=95.48 E-value=0.034 Score=43.16 Aligned_cols=64 Identities=17% Similarity=0.289 Sum_probs=38.8
Q ss_pred HHHHhcCC---CEEEEEcCCChhHHHHHHHHHHcCCC-------CEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 9 VQDLIASE---KILIFSKSYCPYCKMAKDVFQKLKVT-------PKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 9 l~~ii~~~---~VvIYtk~~CP~C~~ak~~L~~~gI~-------y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
++.++... -++.|..+||+.|......+.+..-. +....+|.+.+ . ...+.+.++...+|++++
T Consensus 11 f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~--~-~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 11 FNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE--E-NVALCRDFGVTGYPTLRY 84 (114)
T ss_pred HHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch--h-hHHHHHhCCCCCCCEEEE
Confidence 44444443 47778999999999887777553221 22233332211 1 134666789999999844
No 178
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.45 E-value=0.025 Score=50.75 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCEEEEEcCCChhHHHHHHHH----HHcCCCCEEEEccCCCCc--hH--HHHHHHHHhCCCCCCcccc
Q psy1894 5 SKQFVQDLIASEKILIFSKSYCPYCKMAKDVF----QKLKVTPKTVELDHRDDG--DS--IQDVLLEITGARSQPSDND 75 (228)
Q Consensus 5 ~~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L----~~~gI~y~~idVd~~~d~--~e--~~eeL~~~sg~~tVP~VfI 75 (228)
-.+.|+.+.+..-+++|..+.||+|+..--+| +++|++.-.+++|..... +. .-..+.+..|...+|.+|+
T Consensus 141 ~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 141 KEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred HHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 35678888888999999999999998765555 678999999999875210 00 0022455567889999976
No 179
>KOG4023|consensus
Probab=95.44 E-value=0.015 Score=45.25 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=54.8
Q ss_pred CCEEEEEcCCChhH------HHHHHHHHHcCCCCEEEEccCCCCch-----HHHHHHHHHhCCCCCCccccCCCcccchh
Q psy1894 16 EKILIFSKSYCPYC------KMAKDVFQKLKVTPKTVELDHRDDGD-----SIQDVLLEITGARSQPSDNDLEEKPKAEK 84 (228)
Q Consensus 16 ~~VvIYtk~~CP~C------~~ak~~L~~~gI~y~~idVd~~~d~~-----e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d 84 (228)
+.|.+|+.+.-+.- ..+..+|+.+.|.++.+||....+.+ .++++.+-..|...-||||-+++.-||++
T Consensus 2 ~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye 81 (108)
T KOG4023|consen 2 MVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYE 81 (108)
T ss_pred CceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHH
Confidence 46778887776544 36778999999999999997754221 12233444568889999999999999999
Q ss_pred hhhcc
Q psy1894 85 KILEI 89 (228)
Q Consensus 85 ~L~~~ 89 (228)
.+.+.
T Consensus 82 ~F~ea 86 (108)
T KOG4023|consen 82 LFFEA 86 (108)
T ss_pred HHHHH
Confidence 99654
No 180
>KOG0907|consensus
Probab=95.35 E-value=0.013 Score=45.71 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=40.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCC---EEEEccCCCCchHHHHHHHHHhCCCCCCcccc--CCC----cccc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTP---KTVELDHRDDGDSIQDVLLEITGARSQPSDND--LEE----KPKA 82 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y---~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~Ge----~IGG 82 (228)
|+-|+.+||+.|....=.+.++...| .++.||-+. + ..+.+.++...+|++.+ +|+ ++|+
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~-~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa 93 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----L-EEVAKEFNVKAMPTFVFYKGGEEVDEVVGA 93 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----C-HhHHHhcCceEeeEEEEEECCEEEEEEecC
Confidence 45599999999999988888765444 333344332 1 34677789999999833 554 5555
No 181
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=95.24 E-value=0.054 Score=41.85 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=22.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCC--CCEEEEccC
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKV--TPKTVELDH 50 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI--~y~~idVd~ 50 (228)
-|+.|..+|||.|......|.++.- .+..+.|+.
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~ 63 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMALARQGRVPIYGINY 63 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEEC
Confidence 4788889999999987777655421 244555543
No 182
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.21 E-value=0.03 Score=50.05 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCCEEEEEcCCChhHHHHHHHH----HHcCCCCEEEEccCCCCchHH-----HHHHHHHhCCCCCCcccc
Q psy1894 6 KQFVQDLIASEKILIFSKSYCPYCKMAKDVF----QKLKVTPKTVELDHRDDGDSI-----QDVLLEITGARSQPSDND 75 (228)
Q Consensus 6 ~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L----~~~gI~y~~idVd~~~d~~e~-----~eeL~~~sg~~tVP~VfI 75 (228)
.+.|+.+.+...++.|..+.||+|+..--+| +++|++.-.+.+|..... .+ -.......|...+|.+|+
T Consensus 135 ~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p-~fp~~~~d~gqa~~l~v~~~PAl~L 212 (248)
T PRK13703 135 RQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINP-LLPDSRTDQGQAQRLGVKYFPALML 212 (248)
T ss_pred HHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCC-CCCCCccChhHHHhcCCcccceEEE
Confidence 4568888888999999999999998765444 578998888888873210 11 012334567788999876
No 183
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=95.00 E-value=0.01 Score=51.44 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=36.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEE----EEccC-------C--C--CchHHHHHHHHHhC--CCCCCccccCCC-c
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKT----VELDH-------R--D--DGDSIQDVLLEITG--ARSQPSDNDLEE-K 79 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~----idVd~-------~--~--d~~e~~eeL~~~sg--~~tVP~VfI~Ge-~ 79 (228)
|.+||..+|+-|.-|-.+|.++.-.-.. +.||- | . .-.+.+.+.....| ....||++|||. +
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 7899999999999999999876332222 22221 1 1 11233445555554 456799999997 4
Q ss_pred ccch
Q psy1894 80 PKAE 83 (228)
Q Consensus 80 IGG~ 83 (228)
.+|.
T Consensus 82 ~~g~ 85 (202)
T PF06764_consen 82 RVGS 85 (202)
T ss_dssp EETT
T ss_pred eecc
Confidence 4453
No 184
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=94.93 E-value=0.05 Score=45.03 Aligned_cols=23 Identities=26% Similarity=0.597 Sum_probs=17.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL 39 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~ 39 (228)
-++.|..+|||.|......|.+.
T Consensus 66 vll~F~a~wC~~C~~~~p~l~~l 88 (173)
T TIGR00385 66 VLLNVWASWCPPCRAEHPYLNEL 88 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHH
Confidence 57778899999999876666544
No 185
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=94.88 E-value=0.038 Score=39.70 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=48.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCC-CCCCccccC-CCcccchhhhh
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGA-RSQPSDNDL-EEKPKAEKKIL 87 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~-~tVP~VfI~-Ge~IGG~d~L~ 87 (228)
++.+|.-++ .|..++.+|+..|++|+.+.++.... ....+++...... ..+|.+.++ |..+-..-.|.
T Consensus 2 ~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~-~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~ 71 (76)
T PF02798_consen 2 TLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKG-EHKSPEFLAINPMFGKVPALEDGDGFVLTESNAIL 71 (76)
T ss_dssp EEEEESSST--TTHHHHHHHHHTT--EEEEEEETTTT-GGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHH
T ss_pred EEEEECCCC--chHHHHHHHHHhcccCceEEEecccc-cccchhhhhcccccceeeEEEECCCCEEEcHHHHH
Confidence 456777666 78899999999999999998876432 1222567888887 999999999 77665554443
No 186
>PRK10542 glutathionine S-transferase; Provisional
Probab=94.83 E-value=0.041 Score=45.69 Aligned_cols=72 Identities=13% Similarity=-0.016 Sum_probs=50.4
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc-CCCcccchhhhhcccc
Q psy1894 19 LIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND-LEEKPKAEKKILEIPV 91 (228)
Q Consensus 19 vIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI-~Ge~IGG~d~L~~~~v 91 (228)
.+|+.++ +.|.++.-+|...||+|+.+.|+.........+++.+++....||++.+ ||..|-....|..+-.
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~ 74 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLA 74 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHH
Confidence 4566543 3467778899999999999888754210011246888889999999986 6667777777776644
No 187
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=94.81 E-value=0.1 Score=40.60 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=15.8
Q ss_pred CEEEEEcCCChhHHHHHHHHH
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQ 37 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~ 37 (228)
-++.|..+|||.|......|.
T Consensus 21 vll~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 21 VGLYFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEEEEECCCChHHHHHhHHHH
Confidence 466677899999997655554
No 188
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=94.77 E-value=0.072 Score=49.51 Aligned_cols=67 Identities=21% Similarity=0.309 Sum_probs=42.6
Q ss_pred HHHHHhcCCC--EEEEEcCCChhHHHHHHHHH-------HcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcc--ccC
Q psy1894 8 FVQDLIASEK--ILIFSKSYCPYCKMAKDVFQ-------KLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSD--NDL 76 (228)
Q Consensus 8 ~l~~ii~~~~--VvIYtk~~CP~C~~ak~~L~-------~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V--fI~ 76 (228)
.+..+++..+ ++.|..+||++|......+. ..+-.+....||.+.. .++.+.+|...+|++ |-+
T Consensus 10 ~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~ 84 (462)
T TIGR01130 10 NFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-----KDLAQKYGVSGYPTLKIFRN 84 (462)
T ss_pred HHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-----HHHHHhCCCccccEEEEEeC
Confidence 3455566654 67899999999998765554 2342244444444321 246677899999998 445
Q ss_pred CCc
Q psy1894 77 EEK 79 (228)
Q Consensus 77 Ge~ 79 (228)
|+.
T Consensus 85 g~~ 87 (462)
T TIGR01130 85 GED 87 (462)
T ss_pred Ccc
Confidence 664
No 189
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=94.75 E-value=0.053 Score=39.31 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=32.5
Q ss_pred EEEEEcCCChhHHHHHHHHHH-------cCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQK-------LKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~-------~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
++.|+.+||++|....+.+-+ ..-.|..+.||.+...... .+.. ..+|+++|
T Consensus 21 lv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~----~~~P~~~~ 79 (82)
T PF13899_consen 21 LVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDR----QGYPTFFF 79 (82)
T ss_dssp EEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHH----CSSSEEEE
T ss_pred EEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCC----ccCCEEEE
Confidence 677899999999988776622 3445777777665321111 1222 34999865
No 190
>KOG0867|consensus
Probab=94.66 E-value=0.052 Score=47.25 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=65.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcccccccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPVEAVA 95 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v~~v~ 95 (228)
.+++|+.+.-|.|.++...+..+|++|+.+.++... +.+..+++.+++...+||++.-+|-.+-...+|..+-++.+.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~-ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~ 79 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVK-GEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYG 79 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccc-cccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcC
Confidence 578999999999999999999999999999776652 245567788999999999999998888778888877776665
No 191
>PLN02309 5'-adenylylsulfate reductase
Probab=94.54 E-value=0.098 Score=50.61 Aligned_cols=53 Identities=15% Similarity=0.325 Sum_probs=35.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc-------CCCCEEEEccCCCCchHHHHHHH-HHhCCCCCCcccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL-------KVTPKTVELDHRDDGDSIQDVLL-EITGARSQPSDND 75 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~-------gI~y~~idVd~~~d~~e~~eeL~-~~sg~~tVP~VfI 75 (228)
-++.|..+||++|+.+...|.++ ++.+-.+|+|.+. . .+. +.++...+|+|++
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~--~----~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ--K----EFAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc--h----HHHHhhCCCceeeEEEE
Confidence 58899999999999888777654 2333444554221 1 233 3468899999843
No 192
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=94.44 E-value=0.046 Score=40.04 Aligned_cols=56 Identities=5% Similarity=-0.029 Sum_probs=42.6
Q ss_pred CCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcc
Q psy1894 24 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 24 ~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
+..+.|.++..+|+..|++|+.+++...+ . .+....||.+.+||+.|++...|..+
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~---~-------~~P~GkVP~L~~dg~vI~eS~aIl~y 70 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAE---F-------MSPSGKVPFIRVGNQIVSEFGPIVQF 70 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCcc---c-------cCCCCcccEEEECCEEEeCHHHHHHH
Confidence 46788999999999999999988643210 0 12347899999999999888777654
No 193
>KOG4244|consensus
Probab=94.36 E-value=0.055 Score=48.91 Aligned_cols=65 Identities=9% Similarity=0.124 Sum_probs=51.0
Q ss_pred HhcCCCEEEEEcCC-------ChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchh
Q psy1894 12 LIASEKILIFSKSY-------CPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEK 84 (228)
Q Consensus 12 ii~~~~VvIYtk~~-------CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d 84 (228)
-.+...|.+|.-+- .|||.++.-+|+..+|+|+.++-.. ..++...++|-|-.||++|.+.+
T Consensus 40 d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~-----------~~rSr~G~lPFIELNGe~iaDS~ 108 (281)
T KOG4244|consen 40 DYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL-----------KRRSRNGTLPFIELNGEHIADSD 108 (281)
T ss_pred ccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc-----------eeeccCCCcceEEeCCeeccccH
Confidence 34445677777554 6899999999999999999887653 22345679999999999999877
Q ss_pred hhh
Q psy1894 85 KIL 87 (228)
Q Consensus 85 ~L~ 87 (228)
-|.
T Consensus 109 ~I~ 111 (281)
T KOG4244|consen 109 LIE 111 (281)
T ss_pred HHH
Confidence 664
No 194
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=94.18 E-value=0.059 Score=38.90 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=43.0
Q ss_pred CCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcc
Q psy1894 24 SYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 24 ~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
+.+|+|.++..+|+-.|++|+.+.... +. .+....+|.|..+|+.|+|++.|.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n-~~----------~sp~gkLP~l~~~~~~i~d~~~Ii~~ 68 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNN-PW----------RSPTGKLPALLTSGTKISGPEKIIEY 68 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCC-CC----------CCCCCccCEEEECCEEecChHHHHHH
Confidence 348999999999999999997764332 11 12356899999999999999888765
No 195
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.044 Score=51.90 Aligned_cols=75 Identities=11% Similarity=0.050 Sum_probs=54.5
Q ss_pred hhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHHc---CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCc
Q psy1894 3 PASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKL---KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEK 79 (228)
Q Consensus 3 ~~~~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~---gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~ 79 (228)
.+..++|+.+-......-|..-+|..|..+.+.|.-+ +-.....-||. .-++++.... +.+.||+||.||+.
T Consensus 105 q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdG----a~Fq~Evear-~IMaVPtvflnGe~ 179 (520)
T COG3634 105 QDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDG----ALFQDEVEAR-NIMAVPTVFLNGEE 179 (520)
T ss_pred HHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecc----hhhHhHHHhc-cceecceEEEcchh
Confidence 4567788888888889888888888887777777655 44445555554 3455555543 78999999999998
Q ss_pred ccc
Q psy1894 80 PKA 82 (228)
Q Consensus 80 IGG 82 (228)
.|-
T Consensus 180 fg~ 182 (520)
T COG3634 180 FGQ 182 (520)
T ss_pred hcc
Confidence 764
No 196
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=93.92 E-value=0.12 Score=37.77 Aligned_cols=68 Identities=13% Similarity=-0.041 Sum_probs=43.9
Q ss_pred EEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchH-HHHHHHHH----hCCCCCCccccCCCcccchhhhh
Q psy1894 20 IFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDS-IQDVLLEI----TGARSQPSDNDLEEKPKAEKKIL 87 (228)
Q Consensus 20 IYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e-~~eeL~~~----sg~~tVP~VfI~Ge~IGG~d~L~ 87 (228)
+|.-+.-+.|..++.+|...|++|+.+.++....+.. -.+.+... ....+||++.+||..+.-...|.
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl 75 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAIL 75 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHH
Confidence 4555555788899999999999999998876431100 01111111 15679999988887665544444
No 197
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=93.92 E-value=0.077 Score=39.21 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=38.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHc----CCCCEEEEccCCCCchHHHHHHHHHhCCC--CCCcccc
Q psy1894 15 SEKILIFSKSYCPYCKMAKDVFQKL----KVTPKTVELDHRDDGDSIQDVLLEITGAR--SQPSDND 75 (228)
Q Consensus 15 ~~~VvIYtk~~CP~C~~ak~~L~~~----gI~y~~idVd~~~d~~e~~eeL~~~sg~~--tVP~VfI 75 (228)
..-+++|..+||+.|...+..|.+. .-.+..+-||.+. ...+.+.+|.. .+|++.+
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~-----~~~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD-----FGRHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh-----hHHHHHHcCCChhhCCEEEE
Confidence 3457778999999999999888764 2234445555431 12466667877 9999865
No 198
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=93.92 E-value=0.12 Score=50.06 Aligned_cols=57 Identities=14% Similarity=0.297 Sum_probs=37.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc-------CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccc--cCCC
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL-------KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDN--DLEE 78 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~-------gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf--I~Ge 78 (228)
-++.|..+|||+|+.....|+++ ++.+-.+++|.+. . +.....++..++|++. .+|.
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~--~---~~~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ--K---EFAKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc--c---HHHHHHcCCCccceEEEEECCC
Confidence 47779999999999888777543 2444556666542 1 1233456889999984 3553
No 199
>PTZ00102 disulphide isomerase; Provisional
Probab=93.73 E-value=0.1 Score=49.21 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=40.2
Q ss_pred HHHHhcCC--CEEEEEcCCChhHHHHHHHHH-------HcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--CC
Q psy1894 9 VQDLIASE--KILIFSKSYCPYCKMAKDVFQ-------KLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND--LE 77 (228)
Q Consensus 9 l~~ii~~~--~VvIYtk~~CP~C~~ak~~L~-------~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~G 77 (228)
+...+... -++.|..+||++|.+....+. ..+..+....||-+.+ ..+.+.+|...+|++++ +|
T Consensus 42 f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~g 116 (477)
T PTZ00102 42 FDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-----MELAQEFGVRGYPTIKFFNKG 116 (477)
T ss_pred HHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-----HHHHHhcCCCcccEEEEEECC
Confidence 44455444 588899999999997765443 2233344444443321 24677789999999843 55
Q ss_pred C
Q psy1894 78 E 78 (228)
Q Consensus 78 e 78 (228)
.
T Consensus 117 ~ 117 (477)
T PTZ00102 117 N 117 (477)
T ss_pred c
Confidence 4
No 200
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=93.48 E-value=0.25 Score=48.85 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=36.7
Q ss_pred EEEEEcCCChhHHHHHHH-H------HHc-CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc---CCCc
Q psy1894 18 ILIFSKSYCPYCKMAKDV-F------QKL-KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND---LEEK 79 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~-L------~~~-gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI---~Ge~ 79 (228)
++-|+.+||+.|+..... + +.+ ++.+-.+|++.++ ++ ..++.+.+|...+|++++ ||+.
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~--~~-~~~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANN--AE-DVALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCC--hh-hHHHHHHcCCCCCCEEEEECCCCCC
Confidence 456999999999987553 2 222 3333334555432 22 245777789999999844 4554
No 201
>PTZ00057 glutathione s-transferase; Provisional
Probab=93.25 E-value=0.14 Score=43.12 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=51.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHH--HHHHH--HHhCCCCCCccccCCCcccchhhhhcc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSI--QDVLL--EITGARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~--~eeL~--~~sg~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
++++|+.+..+.|..++-+|...|++|+.+.++... .+. .+.+. ..+....||++.+||..+.....|..+
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~--~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENG--DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccc--hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 488999889999999999999999999999775421 111 01112 357789999999987666555555554
No 202
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=93.23 E-value=0.088 Score=40.18 Aligned_cols=34 Identities=18% Similarity=0.512 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEc
Q psy1894 15 SEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVEL 48 (228)
Q Consensus 15 ~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idV 48 (228)
..-++.|..+|||+|......|..+.-.+..+-|
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i 54 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSV 54 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhhCCEEEE
Confidence 3468888899999999887666654333444333
No 203
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=92.98 E-value=0.24 Score=40.91 Aligned_cols=38 Identities=24% Similarity=0.537 Sum_probs=27.8
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHH----HcCCCCEEEEccCC
Q psy1894 14 ASEKILIFSKSYCPYCKMAKDVFQ----KLKVTPKTVELDHR 51 (228)
Q Consensus 14 ~~~~VvIYtk~~CP~C~~ak~~L~----~~gI~y~~idVd~~ 51 (228)
....++.|-.+|||+|....-.|. ++|+.+-.+++|..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 445699999999999997766654 45766666777653
No 204
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=92.72 E-value=0.43 Score=34.74 Aligned_cols=43 Identities=23% Similarity=0.391 Sum_probs=26.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHH----cC--CCCEEEEccCCCCchHHHH
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQK----LK--VTPKTVELDHRDDGDSIQD 59 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~----~g--I~y~~idVd~~~d~~e~~e 59 (228)
-++.|..+||+.|......|.+ ++ -.++.+-|..+.+..+..+
T Consensus 4 ~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~ 52 (95)
T PF13905_consen 4 VLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKK 52 (95)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHH
Confidence 4678899999999987666653 34 5566666655544344433
No 205
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.12 Score=45.53 Aligned_cols=68 Identities=18% Similarity=0.114 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCCC--EEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcc-cc---hhhhhc
Q psy1894 15 SEKILIFSKSYCPYCKMAKDVFQKLKVTP--KTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKP-KA---EKKILE 88 (228)
Q Consensus 15 ~~~VvIYtk~~CP~C~~ak~~L~~~gI~y--~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~I-GG---~d~L~~ 88 (228)
...|.||+-.+|--|-.....|+..|+-- +.++...- ...++. .+..+||.||+||+.+ +| +++|..
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p-----~f~~~~--~~V~SvP~Vf~DGel~~~dpVdp~~ies 82 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELP-----PFLAFE--KGVISVPSVFIDGELVYADPVDPEEIES 82 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCC-----hHHHhh--cceeecceEEEcCeEEEcCCCCHHHHHH
Confidence 46899999999999999999999999854 44444332 112233 3789999999999966 43 455543
Q ss_pred c
Q psy1894 89 I 89 (228)
Q Consensus 89 ~ 89 (228)
+
T Consensus 83 ~ 83 (265)
T COG5494 83 I 83 (265)
T ss_pred H
Confidence 3
No 206
>KOG0868|consensus
Probab=92.45 E-value=0.11 Score=44.78 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=54.3
Q ss_pred CEEEEE--cCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhccccccc
Q psy1894 17 KILIFS--KSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPVEAV 94 (228)
Q Consensus 17 ~VvIYt--k~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v~~v 94 (228)
+-++|+ .++|. .+++-.|.=.||+|+.+.|+--.++.+.-.++.+++...+||++.|||..+-..=.|..+-.+..
T Consensus 5 KpiLYSYWrSSCs--wRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 5 KPILYSYWRSSCS--WRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETY 82 (217)
T ss_pred cchhhhhhcccch--HHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcC
Confidence 444555 45565 47778888889999888876654333444578999899999999999998876666666655433
No 207
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=92.37 E-value=0.24 Score=35.84 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=18.7
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHH
Q psy1894 14 ASEKILIFSKSYCPYCKMAKDVFQK 38 (228)
Q Consensus 14 ~~~~VvIYtk~~CP~C~~ak~~L~~ 38 (228)
...-++.|..+|||.|...-..|.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~ 43 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEA 43 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHH
Confidence 3446888899999999976655544
No 208
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=92.32 E-value=0.87 Score=36.14 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=45.3
Q ss_pred HHHHhcCCC--EEEEEc--CCCh---hHHHHHHHHHHcC--CCCEEEEccCCCCchHHHHHHHHHhCCC--CCCcc--cc
Q psy1894 9 VQDLIASEK--ILIFSK--SYCP---YCKMAKDVFQKLK--VTPKTVELDHRDDGDSIQDVLLEITGAR--SQPSD--ND 75 (228)
Q Consensus 9 l~~ii~~~~--VvIYtk--~~CP---~C~~ak~~L~~~g--I~y~~idVd~~~d~~e~~eeL~~~sg~~--tVP~V--fI 75 (228)
+.+.|..++ +|.|.. |||+ .|...-.-+.... |.+-.+|++...+. ....|...+|.. .+|+| |.
T Consensus 11 F~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~--~~~~L~~~y~I~~~gyPTl~lF~ 88 (116)
T cd03007 11 FYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEK--LNMELGERYKLDKESYPVIYLFH 88 (116)
T ss_pred HHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccch--hhHHHHHHhCCCcCCCCEEEEEe
Confidence 345666654 578999 9999 8988876665433 55566666542211 124688889988 99998 66
Q ss_pred CCC
Q psy1894 76 LEE 78 (228)
Q Consensus 76 ~Ge 78 (228)
+|.
T Consensus 89 ~g~ 91 (116)
T cd03007 89 GGD 91 (116)
T ss_pred CCC
Confidence 774
No 209
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=92.02 E-value=0.44 Score=38.47 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=16.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHH
Q psy1894 15 SEKILIFSKSYCPYCKMAKDVFQ 37 (228)
Q Consensus 15 ~~~VvIYtk~~CP~C~~ak~~L~ 37 (228)
..-++.|..+|||+|......|.
T Consensus 62 k~~~l~f~a~~C~~C~~~~~~l~ 84 (173)
T PRK03147 62 KGVFLNFWGTWCKPCEKEMPYMN 84 (173)
T ss_pred CEEEEEEECCcCHHHHHHHHHHH
Confidence 34567888999999987655443
No 210
>PTZ00102 disulphide isomerase; Provisional
Probab=91.43 E-value=0.13 Score=48.49 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=33.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcC--------CCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLK--------VTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~g--------I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
-++.|..+||++|......|.+.. +.+-.+|.+.++ .....++...+|++++
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~-------~~~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANE-------TPLEEFSWSAFPTILF 437 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCc-------cchhcCCCcccCeEEE
Confidence 477888999999998888876542 222334444331 2344567889999844
No 211
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=91.23 E-value=0.96 Score=34.57 Aligned_cols=70 Identities=7% Similarity=-0.059 Sum_probs=41.4
Q ss_pred hHHHHHHHHhcCCC--EEEEEcCCChhHHHHHH-HHHHc------CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcc-
Q psy1894 4 ASKQFVQDLIASEK--ILIFSKSYCPYCKMAKD-VFQKL------KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSD- 73 (228)
Q Consensus 4 ~~~~~l~~ii~~~~--VvIYtk~~CP~C~~ak~-~L~~~------gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V- 73 (228)
+..+-++..-++.+ ++.++.+||++|..... +|..- +-.|-.+.+|... ++. ..+...++...+|++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~--~e~-~~~~~~~~~~~~P~~~ 81 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS--SEG-QRFLQSYKVDKYPHIA 81 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC--ccH-HHHHHHhCccCCCeEE
Confidence 44455555555544 55567899999997643 44322 1134444444432 222 357888899999998
Q ss_pred ccC
Q psy1894 74 NDL 76 (228)
Q Consensus 74 fI~ 76 (228)
||+
T Consensus 82 ~i~ 84 (114)
T cd02958 82 IID 84 (114)
T ss_pred EEe
Confidence 443
No 212
>KOG2501|consensus
Probab=91.22 E-value=0.55 Score=39.38 Aligned_cols=54 Identities=20% Similarity=0.447 Sum_probs=32.5
Q ss_pred HHHHhcCCCEE-EEEcCCChhHHH----HHHHH---HHcCCCCEEEEccCCCCchHHHHHHH
Q psy1894 9 VQDLIASEKIL-IFSKSYCPYCKM----AKDVF---QKLKVTPKTVELDHRDDGDSIQDVLL 62 (228)
Q Consensus 9 l~~ii~~~~Vv-IYtk~~CP~C~~----ak~~L---~~~gI~y~~idVd~~~d~~e~~eeL~ 62 (228)
+.+.+...-|. -|+..|||.|.. .+.++ ++.+-+++.+-|+.|.++.++.+.+.
T Consensus 27 ~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~ 88 (157)
T KOG2501|consen 27 ASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYML 88 (157)
T ss_pred HhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHH
Confidence 34444444343 467889999984 34444 44566799988887765544433333
No 213
>KOG3425|consensus
Probab=91.13 E-value=0.34 Score=39.11 Aligned_cols=49 Identities=18% Similarity=0.404 Sum_probs=30.5
Q ss_pred hhHHHHHHHHhcCCCEEEE---------EcCCChhHHHHHHHHH----HcCCCCEEE--EccCC
Q psy1894 3 PASKQFVQDLIASEKILIF---------SKSYCPYCKMAKDVFQ----KLKVTPKTV--ELDHR 51 (228)
Q Consensus 3 ~~~~~~l~~ii~~~~VvIY---------tk~~CP~C~~ak~~L~----~~gI~y~~i--dVd~~ 51 (228)
++.++.++..-+..+|.+| +.||||+|++|.-++. ..+-...++ ++...
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNR 76 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCC
Confidence 4556667777677676665 3478999999866554 334444444 45443
No 214
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=90.95 E-value=0.96 Score=33.86 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=33.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHc----CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKL----KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDN 74 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~----gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf 74 (228)
.-|+.|..+|||.|......|.++ .-....+-+. +.+ .+....+.+..+...+|.++
T Consensus 23 ~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~-~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 23 PTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGE-KAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred eEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCC-HHHHHHHHHHhCCCCCcEEe
Confidence 346778889999999776666543 1223444342 222 22233455556666688765
No 215
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.55 E-value=0.35 Score=40.87 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=36.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHH------cCCC-CEE--EEccCC---------CCchHHHHHHHHHhCCCCCCccc-cCC
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQK------LKVT-PKT--VELDHR---------DDGDSIQDVLLEITGARSQPSDN-DLE 77 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~------~gI~-y~~--idVd~~---------~d~~e~~eeL~~~sg~~tVP~Vf-I~G 77 (228)
-+.||..++|+||.+.+.-+.. +=.+ |.. +++... .....-.++|...++.++.|+++ .|+
T Consensus 45 lllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk 124 (182)
T COG2143 45 LLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDK 124 (182)
T ss_pred EEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcC
Confidence 4899999999999988765532 1111 222 222111 00011134688889999999984 444
Q ss_pred C
Q psy1894 78 E 78 (228)
Q Consensus 78 e 78 (228)
+
T Consensus 125 ~ 125 (182)
T COG2143 125 T 125 (182)
T ss_pred C
Confidence 3
No 216
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=90.24 E-value=0.3 Score=40.37 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=58.3
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCC----CCCCccccCCCcccc---hhhh
Q psy1894 14 ASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGA----RSQPSDNDLEEKPKA---EKKI 86 (228)
Q Consensus 14 ~~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~----~tVP~VfI~Ge~IGG---~d~L 86 (228)
...++++|-.|.|.=|..=-+.|+.+|++...+..+.. ..+++.+|. .+==+..|||.+|-| .++|
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~-------~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI 96 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF-------LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAI 96 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH-------HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHH
Confidence 44589999999999999999999999999888887754 346665543 344578999999987 4555
Q ss_pred hcc----c-cccccCccc
Q psy1894 87 LEI----P-VEAVAKPRI 99 (228)
Q Consensus 87 ~~~----~-v~~v~k~~~ 99 (228)
..+ + +.+++.+-+
T Consensus 97 ~~ll~~~pd~~GlavPgm 114 (149)
T COG3019 97 ARLLAEKPDAKGLAVPGM 114 (149)
T ss_pred HHHHhCCCCcceecCCCC
Confidence 554 2 445555553
No 217
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=90.23 E-value=0.53 Score=39.66 Aligned_cols=31 Identities=16% Similarity=0.455 Sum_probs=20.7
Q ss_pred CEEEEEcCCChhHHHHHHHH----HHcCCCCEEEE
Q psy1894 17 KILIFSKSYCPYCKMAKDVF----QKLKVTPKTVE 47 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L----~~~gI~y~~id 47 (228)
-|+.|..+|||.|...-..+ +..|+.+-.+.
T Consensus 77 vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 46678999999998754444 44565555454
No 218
>KOG0908|consensus
Probab=89.73 E-value=0.29 Score=44.22 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=45.1
Q ss_pred HHHHHHhcCC---CEEEEEcCCChhHHHHHHHHHHcCCCC-----EEEEccCCCCchHHHHHHHHHhCCCCCCcc--ccC
Q psy1894 7 QFVQDLIASE---KILIFSKSYCPYCKMAKDVFQKLKVTP-----KTVELDHRDDGDSIQDVLLEITGARSQPSD--NDL 76 (228)
Q Consensus 7 ~~l~~ii~~~---~VvIYtk~~CP~C~~ak~~L~~~gI~y-----~~idVd~~~d~~e~~eeL~~~sg~~tVP~V--fI~ 76 (228)
++..++-... -||=|+.+||..|.+.-=+|..+.=.| -.+|||+. + .-..-+|....|+. |.|
T Consensus 11 df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c------~-~taa~~gV~amPTFiff~n 83 (288)
T KOG0908|consen 11 DFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDEC------R-GTAATNGVNAMPTFIFFRN 83 (288)
T ss_pred HHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHh------h-chhhhcCcccCceEEEEec
Confidence 3444444433 477799999999999988888764333 44555543 2 23455699999997 778
Q ss_pred CCcc
Q psy1894 77 EEKP 80 (228)
Q Consensus 77 Ge~I 80 (228)
|..|
T Consensus 84 g~ki 87 (288)
T KOG0908|consen 84 GVKI 87 (288)
T ss_pred CeEe
Confidence 8755
No 219
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=89.67 E-value=0.32 Score=39.12 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=43.9
Q ss_pred CCEEEEEcCCC------hhH--------HHHHHHHHHcCCCCEEEEccCCCCc----hHHHHHHHHHhCCCCCCccccCC
Q psy1894 16 EKILIFSKSYC------PYC--------KMAKDVFQKLKVTPKTVELDHRDDG----DSIQDVLLEITGARSQPSDNDLE 77 (228)
Q Consensus 16 ~~VvIYtk~~C------P~C--------~~ak~~L~~~gI~y~~idVd~~~d~----~e~~eeL~~~sg~~tVP~VfI~G 77 (228)
.+|.||--.-| ..- ..+..+|++.|+.+.-+++..+|.. +.+ .++.+..|...+|.++|||
T Consensus 2 ~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V-~~~L~~~G~e~LPitlVdG 80 (123)
T PF06953_consen 2 KKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEV-NQLLQTEGAEALPITLVDG 80 (123)
T ss_dssp -EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHH-HHHHHHH-GGG-SEEEETT
T ss_pred CceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHH-HHHHHHcCcccCCEEEECC
Confidence 46777765553 221 2556778899999999999998742 233 3455556999999999999
Q ss_pred Ccc--cchhhhhcc
Q psy1894 78 EKP--KAEKKILEI 89 (228)
Q Consensus 78 e~I--GG~d~L~~~ 89 (228)
+.+ |.|.+..++
T Consensus 81 eiv~~G~YPt~eEl 94 (123)
T PF06953_consen 81 EIVKTGRYPTNEEL 94 (123)
T ss_dssp EEEEESS---HHHH
T ss_pred EEEEecCCCCHHHH
Confidence 955 656555444
No 220
>KOG0190|consensus
Probab=89.43 E-value=0.64 Score=45.50 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=48.3
Q ss_pred HHHHHHhcCCCE--EEEEcCCChhHH-------HHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcc--cc
Q psy1894 7 QFVQDLIASEKI--LIFSKSYCPYCK-------MAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSD--ND 75 (228)
Q Consensus 7 ~~l~~ii~~~~V--vIYtk~~CP~C~-------~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V--fI 75 (228)
+-+...|..+.+ +-|..|||.+|. .|-..|.+.|-+..--.||... + ..+...++.+.+|++ |.
T Consensus 33 dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~---~--~~~~~~y~v~gyPTlkiFr 107 (493)
T KOG0190|consen 33 DNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE---E--SDLASKYEVRGYPTLKIFR 107 (493)
T ss_pred ccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch---h--hhhHhhhcCCCCCeEEEEe
Confidence 445677777764 568889999998 4556666776555555665542 1 357888999999998 66
Q ss_pred CCCc
Q psy1894 76 LEEK 79 (228)
Q Consensus 76 ~Ge~ 79 (228)
||..
T Consensus 108 nG~~ 111 (493)
T KOG0190|consen 108 NGRS 111 (493)
T ss_pred cCCc
Confidence 8874
No 221
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=89.26 E-value=0.42 Score=36.60 Aligned_cols=69 Identities=10% Similarity=0.147 Sum_probs=36.4
Q ss_pred EEEEcCC-ChhHH------HHHHHHHH--------cCCCCEEEEccCCCCchHHHHHHHHHh-CCCCCCccccCCCcccc
Q psy1894 19 LIFSKSY-CPYCK------MAKDVFQK--------LKVTPKTVELDHRDDGDSIQDVLLEIT-GARSQPSDNDLEEKPKA 82 (228)
Q Consensus 19 vIYtk~~-CP~C~------~ak~~L~~--------~gI~y~~idVd~~~d~~e~~eeL~~~s-g~~tVP~VfI~Ge~IGG 82 (228)
+||+..- |+-|+ ....||+. ..+.++.+||...++...-++...++- .-.-+|.|.|||+.+|.
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 4677765 88885 33445543 245577888877654333233223333 45678999999998863
Q ss_pred -hhhhh
Q psy1894 83 -EKKIL 87 (228)
Q Consensus 83 -~d~L~ 87 (228)
+.-|+
T Consensus 81 Gnp~LK 86 (93)
T PF07315_consen 81 GNPQLK 86 (93)
T ss_dssp SS--HH
T ss_pred CCccHH
Confidence 44443
No 222
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=88.47 E-value=1.4 Score=36.24 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=17.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHH
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQK 38 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~ 38 (228)
-++-|..+|||.|....-.|.+
T Consensus 28 vlL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 28 LLLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEEECCCChhHHHHHHHHHH
Confidence 4666888999999988777754
No 223
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=88.36 E-value=1 Score=44.13 Aligned_cols=67 Identities=9% Similarity=0.108 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHhcCC----CEEEEEcCCChhHHHHHHHHHHc-----CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCc
Q psy1894 2 NPASKQFVQDLIASE----KILIFSKSYCPYCKMAKDVFQKL-----KVTPKTVELDHRDDGDSIQDVLLEITGARSQPS 72 (228)
Q Consensus 2 ~~~~~~~l~~ii~~~----~VvIYtk~~CP~C~~ak~~L~~~-----gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~ 72 (228)
+++.++.|+.++... .+.+|+.+.|++|..++++|++. .|.+++++.+.+ ..+.+.+|...+|.
T Consensus 350 ~~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~-------~~~~~~~~v~~~P~ 422 (555)
T TIGR03143 350 DDSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEE-------PESETLPKITKLPT 422 (555)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccc-------hhhHhhcCCCcCCE
Confidence 566677777777654 45668888999999999999874 344455554443 23556678888999
Q ss_pred ccc
Q psy1894 73 DND 75 (228)
Q Consensus 73 VfI 75 (228)
+.|
T Consensus 423 ~~i 425 (555)
T TIGR03143 423 VAL 425 (555)
T ss_pred EEE
Confidence 876
No 224
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=88.28 E-value=1.6 Score=36.45 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=30.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc---CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccC
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL---KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDL 76 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~---gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~ 76 (228)
-|+.|..+|||+|.+-.-.|.++ |+.+-.++++.+ .....+ +.+..+ ..+|.+..|
T Consensus 71 vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~--~~~~~~-~~~~~~-~~~~~~~~D 129 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDD--RQKAIS-WLKELG-NPYALSLFD 129 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCC--HHHHHH-HHHHcC-CCCceEEEc
Confidence 46668899999998766555543 544433443332 223333 333334 345544434
No 225
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=88.21 E-value=2.1 Score=33.51 Aligned_cols=71 Identities=18% Similarity=0.325 Sum_probs=46.8
Q ss_pred HHHHHHhc---CCCEEEEEcCC-ChhHHHHHHHHHHc------CCCCEEEEccCCCCchHHHHHHHHHhC-CCCCCcccc
Q psy1894 7 QFVQDLIA---SEKILIFSKSY-CPYCKMAKDVFQKL------KVTPKTVELDHRDDGDSIQDVLLEITG-ARSQPSDND 75 (228)
Q Consensus 7 ~~l~~ii~---~~~VvIYtk~~-CP~C~~ak~~L~~~------gI~y~~idVd~~~d~~e~~eeL~~~sg-~~tVP~VfI 75 (228)
+.+.++++ ..+++||=-++ ||-+..|..-|++. ++++-+++|-.+ ..+-+++++.+| ...-||+++
T Consensus 8 eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~---R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 8 EQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEY---RPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp HHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGG---HHHHHHHHHHHT----SSEEEE
T ss_pred HHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeC---chhHHHHHHHhCCCcCCCcEEE
Confidence 44444444 57899998777 99999998888653 277888888766 567788899888 467899855
Q ss_pred --CCCcc
Q psy1894 76 --LEEKP 80 (228)
Q Consensus 76 --~Ge~I 80 (228)
||+.+
T Consensus 85 i~~g~~v 91 (105)
T PF11009_consen 85 IKNGKVV 91 (105)
T ss_dssp EETTEEE
T ss_pred EECCEEE
Confidence 77754
No 226
>PHA03075 glutaredoxin-like protein; Provisional
Probab=87.77 E-value=0.73 Score=36.95 Aligned_cols=35 Identities=14% Similarity=0.502 Sum_probs=30.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccC
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDH 50 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~ 50 (228)
..+++|++|-|+.|.-+..+|..+.-+|+..-|+.
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNI 37 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVNI 37 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEe
Confidence 46899999999999999999999998898866554
No 227
>KOG1695|consensus
Probab=87.75 E-value=1 Score=39.19 Aligned_cols=70 Identities=11% Similarity=-0.014 Sum_probs=57.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEI 89 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~ 89 (228)
.+..++.-+..+.|..++.+|.-.|++|+++.+...+. -..++..+...++|++-|||..|.-.-.|..+
T Consensus 2 ~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~----w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~Ry 71 (206)
T KOG1695|consen 2 PPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA----WEELKDKMPFGQLPVLEVDGKKLVQSRAILRY 71 (206)
T ss_pred CceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc----hhhhcccCCCCCCCEEeECCEeeccHHHHHHH
Confidence 45678888999999999999999999999999987631 12456667889999999999999877777665
No 228
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=86.96 E-value=0.9 Score=40.64 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=40.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEE----cc---------CC--CCchHHHHHHHHHhCCC--CCCccccCCC
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVE----LD---------HR--DDGDSIQDVLLEITGAR--SQPSDNDLEE 78 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~id----Vd---------~~--~d~~e~~eeL~~~sg~~--tVP~VfI~Ge 78 (228)
|.+||..+|.-|.-|-++|.++--....+- || .- .+-.+.+..+.+..|.+ ..||+||||.
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr 122 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGR 122 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeech
Confidence 789999999999999999988744433321 21 11 11133344566666654 5599999996
No 229
>smart00594 UAS UAS domain.
Probab=86.95 E-value=2.8 Score=32.67 Aligned_cols=69 Identities=12% Similarity=-0.040 Sum_probs=40.4
Q ss_pred hHHHHHHHHhcC--CCEEEEEcCCChhHHHHHH-HHHHcCC------CCEEEEccCCCCchHHHHHHHHHhCCCCCCccc
Q psy1894 4 ASKQFVQDLIAS--EKILIFSKSYCPYCKMAKD-VFQKLKV------TPKTVELDHRDDGDSIQDVLLEITGARSQPSDN 74 (228)
Q Consensus 4 ~~~~~l~~ii~~--~~VvIYtk~~CP~C~~ak~-~L~~~gI------~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf 74 (228)
+..+-+....++ .-++.+..+||++|....+ +|..-.| .|-...+|... ++. ..+...++..++|++.
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~--~eg-~~l~~~~~~~~~P~~~ 91 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDT--SEG-QRVSQFYKLDSFPYVA 91 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCC--hhH-HHHHHhcCcCCCCEEE
Confidence 334455555555 3466778899999986533 3432211 24443344332 122 3578888999999995
Q ss_pred c
Q psy1894 75 D 75 (228)
Q Consensus 75 I 75 (228)
+
T Consensus 92 ~ 92 (122)
T smart00594 92 I 92 (122)
T ss_pred E
Confidence 4
No 230
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=86.69 E-value=1.2 Score=36.07 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCC--EEEEEcCCChhHHHHHHHH
Q psy1894 6 KQFVQDLIASEK--ILIFSKSYCPYCKMAKDVF 36 (228)
Q Consensus 6 ~~~l~~ii~~~~--VvIYtk~~CP~C~~ak~~L 36 (228)
.+-+...-++++ +++|+.+|||+|.......
T Consensus 13 eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 13 EEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 344444444443 5668899999999886653
No 231
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=86.43 E-value=0.63 Score=43.19 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=32.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc---------CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL---------KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~---------gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
-++.|..+||+.|......+.+. ++.+-.+|++..+ +.. ++...+|++++
T Consensus 367 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--------~~~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 367 VLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--------VPP-FEVEGFPTIKF 425 (462)
T ss_pred EEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--------cCC-CCccccCEEEE
Confidence 46779999999999887777542 2333444554431 222 57789999855
No 232
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=86.32 E-value=0.62 Score=41.36 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=23.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHH---cC-CCCEEEE
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQK---LK-VTPKTVE 47 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~---~g-I~y~~id 47 (228)
.|++|+-+.||||+++...+.. .| |.+..+.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip 154 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHIL 154 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEe
Confidence 5899999999999999777653 23 5555554
No 233
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=83.30 E-value=4.6 Score=31.31 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=27.4
Q ss_pred CEEEEE-cCCChhHHHHHHHHHH-------cCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 17 KILIFS-KSYCPYCKMAKDVFQK-------LKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 17 ~VvIYt-k~~CP~C~~ak~~L~~-------~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
.|++|. .+|||+|..--..|.+ .|+. .+-|..++. ... ..+.+..+ ..+|.+.-
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~--vv~V~~~~~-~~~-~~~~~~~~-~~~p~~~D 87 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKLLPELDALGVE--LVAVGPESP-EKL-EAFDKGKF-LPFPVYAD 87 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeE--EEEEeCCCH-HHH-HHHHHhcC-CCCeEEEC
Confidence 445554 6899999875444433 3444 444443321 222 23444333 45775543
No 234
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=81.93 E-value=0.8 Score=35.64 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=19.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHH
Q psy1894 15 SEKILIFSKSYCPYCKMAKDVFQK 38 (228)
Q Consensus 15 ~~~VvIYtk~~CP~C~~ak~~L~~ 38 (228)
...|++|+-++||+|......+..
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 357899999999999988766654
No 235
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=81.48 E-value=2.2 Score=30.84 Aligned_cols=53 Identities=15% Similarity=0.061 Sum_probs=42.4
Q ss_pred ChhHHHHHHHHHHcCCC---CEEEEccCCCCchHHHHHHHHHhCCCCCCcccc-CCCcccchhhhhcc
Q psy1894 26 CPYCKMAKDVFQKLKVT---PKTVELDHRDDGDSIQDVLLEITGARSQPSDND-LEEKPKAEKKILEI 89 (228)
Q Consensus 26 CP~C~~ak~~L~~~gI~---y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI-~Ge~IGG~d~L~~~ 89 (228)
-|.|.++..+|+-.+.+ ++.+..+.- ..+....+|.+.. +|+.++|+.+|.++
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~n~-----------~~Sptg~LP~L~~~~~~~vsg~~~Iv~y 70 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSNNP-----------WLSPTGELPALIDSGGTWVSGFRNIVEY 70 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcCCC-----------CcCCCCCCCEEEECCCcEEECHHHHHHh
Confidence 79999999999999999 665554431 1245679999999 99999999998764
No 236
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=81.01 E-value=4.7 Score=31.55 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=27.6
Q ss_pred EEEEEcC-CChhHHHHHHHHHH-------cCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccc
Q psy1894 18 ILIFSKS-YCPYCKMAKDVFQK-------LKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDN 74 (228)
Q Consensus 18 VvIYtk~-~CP~C~~ak~~L~~-------~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf 74 (228)
|+.|-.+ |||.|....-.|.+ .|+.+-.+..+.+ +...+.+.+ ....+|.+.
T Consensus 32 vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~---~~~~~~~~~--~~~~~~~~~ 91 (146)
T PF08534_consen 32 VVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDD---PPVREFLKK--YGINFPVLS 91 (146)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSS---HHHHHHHHH--TTTTSEEEE
T ss_pred EEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCC---HHHHHHHHh--hCCCceEEe
Confidence 5566667 89999866644433 3444444555544 233333333 223555543
No 237
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=80.98 E-value=1 Score=35.90 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=23.1
Q ss_pred cCCChhHHHHHHHH----HHcCCCCEE--EEccCCCCchHHH---HHHHH--HhCCCCCCccc
Q psy1894 23 KSYCPYCKMAKDVF----QKLKVTPKT--VELDHRDDGDSIQ---DVLLE--ITGARSQPSDN 74 (228)
Q Consensus 23 k~~CP~C~~ak~~L----~~~gI~y~~--idVd~~~d~~e~~---eeL~~--~sg~~tVP~Vf 74 (228)
.+|||+|.+|.-++ ....-.... +.|... +..+ ..++. ......||+++
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r---~~Wkdp~n~fR~~p~~~l~~IPTLi 94 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDR---PEWKDPNNPFRTDPDLKLKGIPTLI 94 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---H---HHHC-TTSHHHH--CC---SSSEEE
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCH---HHhCCCCCCceEcceeeeeecceEE
Confidence 46899999987555 443223444 455432 1111 23444 34567899985
No 238
>KOG4277|consensus
Probab=79.96 E-value=1.1 Score=41.85 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=45.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEE----ccCCCCchHHHHHHHHHhCCCCCCcc-ccCCCcc----cc--hhhh
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVE----LDHRDDGDSIQDVLLEITGARSQPSD-NDLEEKP----KA--EKKI 86 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~id----Vd~~~d~~e~~eeL~~~sg~~tVP~V-fI~Ge~I----GG--~d~L 86 (228)
.+=|..|||.+|++..-++++.|.....+. |...+ +.. ..++....|...+|+| |..|.+. || -++|
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlD-aT~-f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~Kd~i 124 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLD-ATR-FPAIANEFGIQGYPTIKFFKGDHAIDYRGGREKDAI 124 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeecccc-ccc-chhhHhhhccCCCceEEEecCCeeeecCCCccHHHH
Confidence 566788999999999999888776654432 23221 112 2457777899999999 5555433 55 4555
Q ss_pred hcc
Q psy1894 87 LEI 89 (228)
Q Consensus 87 ~~~ 89 (228)
.++
T Consensus 125 ieF 127 (468)
T KOG4277|consen 125 IEF 127 (468)
T ss_pred HHH
Confidence 544
No 239
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.62 E-value=1.4 Score=34.06 Aligned_cols=73 Identities=10% Similarity=0.116 Sum_probs=44.4
Q ss_pred cCCCEEEEEcCC-ChhHH------HHHHHHHHc------C--CCCEEEEccCCCCchHHHHHHHHH-h-CCCCCCccccC
Q psy1894 14 ASEKILIFSKSY-CPYCK------MAKDVFQKL------K--VTPKTVELDHRDDGDSIQDVLLEI-T-GARSQPSDNDL 76 (228)
Q Consensus 14 ~~~~VvIYtk~~-CP~C~------~ak~~L~~~------g--I~y~~idVd~~~d~~e~~eeL~~~-s-g~~tVP~VfI~ 76 (228)
+..++++|+... |--|. ..-.||+.. + +.|+.+||...+...... ++.+. - .---+|.|.|+
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~-~~aekI~~dey~YPlivve 81 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDL-QFAEKIEQDEYFYPLIVVE 81 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHH-HHHHHHhcccccceEEEEc
Confidence 445788998776 88886 334555532 3 445777886544333322 23332 2 45678999999
Q ss_pred CCcccc-hhhhh
Q psy1894 77 EEKPKA-EKKIL 87 (228)
Q Consensus 77 Ge~IGG-~d~L~ 87 (228)
|+.++. +.-|+
T Consensus 82 deiVaeGnprlK 93 (106)
T COG4837 82 DEIVAEGNPRLK 93 (106)
T ss_pred ceEeecCCchHH
Confidence 998853 55444
No 240
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=79.62 E-value=4.6 Score=31.25 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=15.7
Q ss_pred CCEEEEEcCCChh-HHHHHHHHH
Q psy1894 16 EKILIFSKSYCPY-CKMAKDVFQ 37 (228)
Q Consensus 16 ~~VvIYtk~~CP~-C~~ak~~L~ 37 (228)
.-|+.|..+|||+ |...-..|.
T Consensus 24 ~~vl~f~~~~C~~~C~~~l~~l~ 46 (142)
T cd02968 24 PVLVYFGYTHCPDVCPTTLANLA 46 (142)
T ss_pred EEEEEEEcCCCcccCHHHHHHHH
Confidence 3577788899997 986544443
No 241
>PTZ00056 glutathione peroxidase; Provisional
Probab=77.79 E-value=5.6 Score=33.88 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=12.6
Q ss_pred CEEEEEcCCChhHHHH
Q psy1894 17 KILIFSKSYCPYCKMA 32 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~a 32 (228)
-++.|-.+|||+|..-
T Consensus 42 vlv~fwAswC~~C~~e 57 (199)
T PTZ00056 42 LMITNSASKCGLTKKH 57 (199)
T ss_pred EEEEEECCCCCChHHH
Confidence 4667788999999853
No 242
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=77.01 E-value=2.1 Score=32.59 Aligned_cols=64 Identities=22% Similarity=0.357 Sum_probs=40.1
Q ss_pred EEcCCChhHHHHHHHHHHcCC--CCEEEEccCCCCchHHHHHHHHHhC-----CCCCCccccCCC-cccchhhhhcc
Q psy1894 21 FSKSYCPYCKMAKDVFQKLKV--TPKTVELDHRDDGDSIQDVLLEITG-----ARSQPSDNDLEE-KPKAEKKILEI 89 (228)
Q Consensus 21 Ytk~~CP~C~~ak~~L~~~gI--~y~~idVd~~~d~~e~~eeL~~~sg-----~~tVP~VfI~Ge-~IGG~d~L~~~ 89 (228)
|.-..||+|.....++..+.. .+..+++...++ .++....| ..+.-.+.-+|+ ...|.+.+..+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l 73 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPD-----QALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRL 73 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhh-----hhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHH
Confidence 445789999999999999865 467777743321 11111112 233444434776 78888888765
No 243
>PTZ00256 glutathione peroxidase; Provisional
Probab=76.93 E-value=8.5 Score=32.04 Aligned_cols=54 Identities=7% Similarity=0.034 Sum_probs=27.7
Q ss_pred EEEEcCCChhHHHHHHHH----H---HcCCCCEEEEccC----CC-CchHHHHHHHHHhCCCCCCcc
Q psy1894 19 LIFSKSYCPYCKMAKDVF----Q---KLKVTPKTVELDH----RD-DGDSIQDVLLEITGARSQPSD 73 (228)
Q Consensus 19 vIYtk~~CP~C~~ak~~L----~---~~gI~y~~idVd~----~~-d~~e~~eeL~~~sg~~tVP~V 73 (228)
+++-.+|||+|..--..| + ..|+.+--++++. .+ +..+....+.+.+| -++|.+
T Consensus 46 v~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~-~~fpv~ 111 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFN-VDFPLF 111 (183)
T ss_pred EEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCCCc
Confidence 356899999998633333 2 3354444444432 11 12333333343444 468886
No 244
>PLN02412 probable glutathione peroxidase
Probab=76.31 E-value=7.4 Score=31.96 Aligned_cols=56 Identities=9% Similarity=0.093 Sum_probs=28.7
Q ss_pred EEEEEcCCChhHHHHHHHH-------HHcCCCCEEEEccC----C-CCchHHHHHHHHHhCCCCCCccc
Q psy1894 18 ILIFSKSYCPYCKMAKDVF-------QKLKVTPKTVELDH----R-DDGDSIQDVLLEITGARSQPSDN 74 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L-------~~~gI~y~~idVd~----~-~d~~e~~eeL~~~sg~~tVP~Vf 74 (228)
|+.|..+|||.|..--..| ...|+.+--+..+. . .+..+....+.+.+| -++|.+.
T Consensus 33 lv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~-~~fpvl~ 100 (167)
T PLN02412 33 LIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFK-AEFPIFD 100 (167)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccC-CCCceEe
Confidence 4447789999998532222 23344443344332 1 111233444444444 5789875
No 245
>KOG0191|consensus
Probab=76.15 E-value=2.7 Score=39.14 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=38.7
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHHcC----CCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 14 ASEKILIFSKSYCPYCKMAKDVFQKLK----VTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 14 ~~~~VvIYtk~~CP~C~~ak~~L~~~g----I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
...-+++|..|||++|......+.+.. -....-.||.+. ...+.+.++...+|++.+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~-----~~~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE-----HKDLCEKYGIQGFPTLKV 107 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh-----hHHHHHhcCCccCcEEEE
Confidence 345789999999999998776666442 122334444431 235777889999999844
No 246
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=75.98 E-value=6.1 Score=34.38 Aligned_cols=63 Identities=8% Similarity=0.132 Sum_probs=45.6
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcc
Q psy1894 14 ASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKP 80 (228)
Q Consensus 14 ~~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~I 80 (228)
....+.+|++..||.|......+-..+-+++.+-|+...+... +..+.....+|.--|....|
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~----Ir~WA~~~~Idp~~V~~~~I 170 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDER----IRQWANRHQIDPAKVRSRQI 170 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHH----HHHHHHHcCCCHHHeecCee
Confidence 3457999999999999988888877888899988885433233 44455556777766665544
No 247
>KOG0912|consensus
Probab=73.79 E-value=3.7 Score=38.31 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=45.2
Q ss_pred HHHHhcCCC--EEEEEcCCChhHHHHHHHHHHcCCC----C---EEE--EccCCCCchHHHHHHHHHhCCCCCCcc--cc
Q psy1894 9 VQDLIASEK--ILIFSKSYCPYCKMAKDVFQKLKVT----P---KTV--ELDHRDDGDSIQDVLLEITGARSQPSD--ND 75 (228)
Q Consensus 9 l~~ii~~~~--VvIYtk~~CP~C~~ak~~L~~~gI~----y---~~i--dVd~~~d~~e~~eeL~~~sg~~tVP~V--fI 75 (228)
+..++.... .+-|+.+||||+...+-++.+..-. | ..+ .||-+ ..+.+...|....+|++ |.
T Consensus 6 ~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd-----~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 6 IDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD-----KEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred HHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc-----hhhHHhhhhccccCceeeeee
Confidence 345555554 4568899999999999998764222 1 111 23333 13568888888999997 88
Q ss_pred CCCccc
Q psy1894 76 LEEKPK 81 (228)
Q Consensus 76 ~Ge~IG 81 (228)
||..+.
T Consensus 81 nG~~~~ 86 (375)
T KOG0912|consen 81 NGEMMK 86 (375)
T ss_pred ccchhh
Confidence 987553
No 248
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=73.72 E-value=3.3 Score=28.95 Aligned_cols=18 Identities=22% Similarity=0.739 Sum_probs=14.8
Q ss_pred EcCCChhHHHHHHHHHHc
Q psy1894 22 SKSYCPYCKMAKDVFQKL 39 (228)
Q Consensus 22 tk~~CP~C~~ak~~L~~~ 39 (228)
..+|||+|......|.+.
T Consensus 40 ~~~~C~~C~~~~~~l~~~ 57 (127)
T COG0526 40 WAPWCPPCRAEAPLLEEL 57 (127)
T ss_pred EcCcCHHHHhhchhHHHH
Confidence 489999999987777654
No 249
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=73.68 E-value=9.8 Score=30.51 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=36.6
Q ss_pred hhHHHHHHHHh-cCCCEEEEEcCCChhHH------------HHHHHHHHcCCCCEEEEccC
Q psy1894 3 PASKQFVQDLI-ASEKILIFSKSYCPYCK------------MAKDVFQKLKVTPKTVELDH 50 (228)
Q Consensus 3 ~~~~~~l~~ii-~~~~VvIYtk~~CP~C~------------~ak~~L~~~gI~y~~idVd~ 50 (228)
+++.+.|+.+. ....|++.|......+. ....+|++++++|+.+.+..
T Consensus 27 ~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 27 LAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 45666676663 45677777777777666 78999999999999998876
No 250
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=72.97 E-value=4 Score=40.31 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=17.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKL 39 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~ 39 (228)
-|+-|-.+|||.|....-.|.++
T Consensus 59 VvV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 59 TLIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHH
Confidence 36778899999999876666543
No 251
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=72.54 E-value=11 Score=33.44 Aligned_cols=57 Identities=7% Similarity=0.003 Sum_probs=30.0
Q ss_pred CCEEEEEcCCChhHHHHHHHH-------HHcCCCCEEEEccC----C-CCchHHHHHHHHHhCCCCCCcc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVF-------QKLKVTPKTVELDH----R-DDGDSIQDVLLEITGARSQPSD 73 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L-------~~~gI~y~~idVd~----~-~d~~e~~eeL~~~sg~~tVP~V 73 (228)
.-|+.|..+|||.|..-...| ...|+.+--++++. + .+..++.+.+.+.+| .++|.+
T Consensus 101 ~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g-~~fPvl 169 (236)
T PLN02399 101 VLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFK-AEFPIF 169 (236)
T ss_pred eEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCccc
Confidence 357788899999997533222 33455544455432 1 122333333323344 468863
No 252
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=72.16 E-value=11 Score=33.11 Aligned_cols=70 Identities=14% Similarity=0.254 Sum_probs=51.7
Q ss_pred CChhHHHHHHHHhcCCCEEEEEcC-----CChhHHHHHHHHHHc------CCCCEEEEccCCCCchHHHHHHHHHhCCCC
Q psy1894 1 MNPASKQFVQDLIASEKILIFSKS-----YCPYCKMAKDVFQKL------KVTPKTVELDHRDDGDSIQDVLLEITGARS 69 (228)
Q Consensus 1 ~~~~~~~~l~~ii~~~~VvIYtk~-----~CP~C~~ak~~L~~~------gI~y~~idVd~~~d~~e~~eeL~~~sg~~t 69 (228)
+|+.+++.|+.+-..-.|++|..+ .-++=..++.+|+++ .|.++++|.+..+ +...+....+|...
T Consensus 12 LS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~---~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 12 LSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENP---SEAEEKAKEYGIQP 88 (271)
T ss_pred CCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCCh---HHHHHHHHhcCCCc
Confidence 478899999999998899999988 567778899999877 5778888876653 33344555566555
Q ss_pred CCcc
Q psy1894 70 QPSD 73 (228)
Q Consensus 70 VP~V 73 (228)
++..
T Consensus 89 ~~~~ 92 (271)
T PF09822_consen 89 VQIE 92 (271)
T ss_pred ccee
Confidence 4443
No 253
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=71.87 E-value=9.1 Score=28.66 Aligned_cols=56 Identities=25% Similarity=0.507 Sum_probs=27.7
Q ss_pred CEEEEEcC-CChhHHHHHHHHHHc----CC-CCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 17 KILIFSKS-YCPYCKMAKDVFQKL----KV-TPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 17 ~VvIYtk~-~CP~C~~ak~~L~~~----gI-~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
-|+.|... |||+|...-..|.++ .- .+..+-|..++. .+.. ++.+..+ ..+|.+.-
T Consensus 28 ~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~-~~~~-~~~~~~~-~~~~~~~D 89 (124)
T PF00578_consen 28 VVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP-EEIK-QFLEEYG-LPFPVLSD 89 (124)
T ss_dssp EEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH-HHHH-HHHHHHT-CSSEEEEE
T ss_pred EEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc-cchh-hhhhhhc-cccccccC
Confidence 45555555 899997655444432 21 235555544431 2333 3444334 55565543
No 254
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=71.52 E-value=3.6 Score=33.11 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=20.9
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHHc
Q psy1894 14 ASEKILIFSKSYCPYCKMAKDVFQKL 39 (228)
Q Consensus 14 ~~~~VvIYtk~~CP~C~~ak~~L~~~ 39 (228)
....|+.|+-..||+|..+...+...
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHH
Confidence 34579999999999999887777543
No 255
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=71.39 E-value=8.5 Score=30.79 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=14.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHH
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQK 38 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~ 38 (228)
-|+.|-.+||| |..--..|.+
T Consensus 25 vvl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 25 LLIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEEEEEcCCCC-chHHHHHHHH
Confidence 35558889999 9875444443
No 256
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=71.29 E-value=3.8 Score=32.36 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHH----HHc----CCCCEEEEc
Q psy1894 15 SEKILIFSKSYCPYCKMAKDVF----QKL----KVTPKTVEL 48 (228)
Q Consensus 15 ~~~VvIYtk~~CP~C~~ak~~L----~~~----gI~y~~idV 48 (228)
...|++|.-..||+|......+ +.+ .|.+..+++
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 3469999999999998876555 343 344555555
No 257
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=70.81 E-value=7 Score=32.93 Aligned_cols=60 Identities=15% Similarity=0.273 Sum_probs=25.8
Q ss_pred EEEcCCChhHHHHHH-HHHHc------CCCCEEEEccCCCCchHHHH----HHHHHhCCCCCCcc-cc--CCCcc
Q psy1894 20 IFSKSYCPYCKMAKD-VFQKL------KVTPKTVELDHRDDGDSIQD----VLLEITGARSQPSD-ND--LEEKP 80 (228)
Q Consensus 20 IYtk~~CP~C~~ak~-~L~~~------gI~y~~idVd~~~d~~e~~e----eL~~~sg~~tVP~V-fI--~Ge~I 80 (228)
-.+.+||.+|+.+.. .|..- +-.|--|-||.+.. +.+.. .....+|....|.. |+ +|+.+
T Consensus 43 ~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~-Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 43 SIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREER-PDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp EEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT--HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred EEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccC-ccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 346799999986543 44332 22344455554421 33322 22334477888875 33 55544
No 258
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=69.97 E-value=20 Score=27.91 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=25.7
Q ss_pred EEEEE-cCCChhHHHHHHHHHHc----C-CCCEEEEccCCCCchHHHHHHHHHhCCCCCCcc
Q psy1894 18 ILIFS-KSYCPYCKMAKDVFQKL----K-VTPKTVELDHRDDGDSIQDVLLEITGARSQPSD 73 (228)
Q Consensus 18 VvIYt-k~~CP~C~~ak~~L~~~----g-I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V 73 (228)
|++|. .+|||.|......|.++ + -.+..+-|..++ ...++ .+.+..+ ..+|.+
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~-~~~~~-~~~~~~~-~~~~~~ 90 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS-PFSLR-AWAEENG-LTFPLL 90 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC-HHHHH-HHHHhcC-CCceEe
Confidence 34443 68999998654444332 1 224455554442 12333 3444444 345643
No 259
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=68.82 E-value=13 Score=28.47 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=27.9
Q ss_pred cCCCEEEEE--cCCChhHHHHHHHHHH-------cCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccc
Q psy1894 14 ASEKILIFS--KSYCPYCKMAKDVFQK-------LKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDN 74 (228)
Q Consensus 14 ~~~~VvIYt--k~~CP~C~~ak~~L~~-------~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf 74 (228)
....++|+. ..|||.|...-..|.+ .|+. .+-|..++ ++....+.+..+...+|.+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~--~i~is~d~--~~~~~~~~~~~~~~~~~~l~ 86 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAE--VLGVSVDS--PFSHKAWAEKEGGLNFPLLS 86 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCE--EEEEeCCC--HHHHHHHHhcccCCCceEEE
Confidence 344455544 4689999865444432 3444 44444332 22223344444345666543
No 260
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=68.61 E-value=3.3 Score=32.71 Aligned_cols=25 Identities=12% Similarity=-0.105 Sum_probs=18.6
Q ss_pred HHhCCCCCCccccCCCcccchhhhh
Q psy1894 63 EITGARSQPSDNDLEEKPKAEKKIL 87 (228)
Q Consensus 63 ~~sg~~tVP~VfI~Ge~IGG~d~L~ 87 (228)
...|...+|++||||+.+.|..++.
T Consensus 130 ~~~~i~~tPt~~inG~~~~~~~~~~ 154 (162)
T PF13462_consen 130 RQLGITGTPTFFINGKYVVGPYTIE 154 (162)
T ss_dssp HHHT-SSSSEEEETTCEEETTTSHH
T ss_pred HHcCCccccEEEECCEEeCCCCCHH
Confidence 4458899999999999987644443
No 261
>KOG4420|consensus
Probab=68.49 E-value=1.9 Score=39.33 Aligned_cols=74 Identities=7% Similarity=0.132 Sum_probs=60.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcccchhhhhcccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPV 91 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IGG~d~L~~~~v 91 (228)
..++|.-+..-.+++++-++.+.||.|+.++|+.- .+......+.+.+....||++.-+...|-+++.|.++..
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~-~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvE 99 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLP-QGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVE 99 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCc-cccccCchheecCCCCCCceEecCCeecccHHHHHHHHH
Confidence 47899999999999999999999999999999864 234455678888888899987666667788888877744
No 262
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=68.48 E-value=4.9 Score=30.98 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=16.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHH
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQK 38 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~ 38 (228)
.-|+.|..+|||+|...-..|.+
T Consensus 25 ~vvl~F~a~~C~~C~~~~p~l~~ 47 (126)
T cd03012 25 VVLLDFWTYCCINCLHTLPYLTD 47 (126)
T ss_pred EEEEEEECCCCccHHHHHHHHHH
Confidence 35777888999999876555543
No 263
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=67.84 E-value=14 Score=28.73 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=42.6
Q ss_pred hHHHHHHHHhcCCCEEEEEcCCChhHHH-HHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCccc
Q psy1894 4 ASKQFVQDLIASEKILIFSKSYCPYCKM-AKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKPK 81 (228)
Q Consensus 4 ~~~~~l~~ii~~~~VvIYtk~~CP~C~~-ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~IG 81 (228)
.+.+.|..+....+ +| .|-.|.. ++.+|.+.||+.+.+.+........+ ...+..+. --.|-.||.|.|
T Consensus 4 ~~~Q~I~~I~~~f~--~~---qC~~cA~Al~~~L~~~gI~Gk~i~l~T~~~~~~~--I~sd~~~~--~~sIt~NG~H~g 73 (100)
T PF15643_consen 4 EVRQQIGKIASRFK--IF---QCVECASALKQFLKQAGIPGKIIRLYTGYHEGPF--IYSDRLGP--QESITTNGRHYG 73 (100)
T ss_pred HHHHHHHHhhcccC--ce---ehHHHHHHHHHHHHHCCCCceEEEEEecCCCCce--ehhhhhcC--CcceeeCCEEEE
Confidence 34555666655533 33 4999965 59999999999999998773211111 22333321 156777888775
No 264
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=65.87 E-value=12 Score=28.74 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=26.2
Q ss_pred CCCEEEEE--cCCChhHHHHHHHH-------HHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcc
Q psy1894 15 SEKILIFS--KSYCPYCKMAKDVF-------QKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSD 73 (228)
Q Consensus 15 ~~~VvIYt--k~~CP~C~~ak~~L-------~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V 73 (228)
...++|+. ..|||.|...-..| ...|+ ..+-|..++. ..+. ++.+..+ ..+|.+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~--~vv~is~d~~-~~~~-~~~~~~~-~~~~~l 85 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGA--VVIGVSPDSV-ESHA-KFAEKYG-LPFPLL 85 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCCCH-HHHH-HHHHHhC-CCceEE
Confidence 34444444 46899997543333 33455 4444444321 3333 3444444 356643
No 265
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=65.48 E-value=21 Score=28.50 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=13.6
Q ss_pred EEEEEcCCChhHHHHHH
Q psy1894 18 ILIFSKSYCPYCKMAKD 34 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~ 34 (228)
|+.|-.+|||+|...-.
T Consensus 26 vv~~~as~C~~c~~~~~ 42 (153)
T TIGR02540 26 LVVNVASECGFTDQNYR 42 (153)
T ss_pred EEEEeCCCCCchhhhHH
Confidence 67888999999976443
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=64.21 E-value=14 Score=39.42 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=16.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHH
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQK 38 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~ 38 (228)
-|+-|..+|||.|....-.|.+
T Consensus 423 vll~FWAsWC~pC~~e~P~L~~ 444 (1057)
T PLN02919 423 VILDFWTYCCINCMHVLPDLEF 444 (1057)
T ss_pred EEEEEECCcChhHHhHhHHHHH
Confidence 4677889999999976655543
No 267
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=62.40 E-value=27 Score=29.27 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=30.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCC
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDD 53 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d 53 (228)
|++=+.+.=|.+..+...|+++||+|+..-+..+-.
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRt 38 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRT 38 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccC
Confidence 455567778999999999999999999888877644
No 268
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=61.89 E-value=4.5 Score=32.98 Aligned_cols=24 Identities=13% Similarity=-0.064 Sum_probs=19.5
Q ss_pred HhCCCCCCccccCCCcccchhhhh
Q psy1894 64 ITGARSQPSDNDLEEKPKAEKKIL 87 (228)
Q Consensus 64 ~sg~~tVP~VfI~Ge~IGG~d~L~ 87 (228)
..|...+|+++|||+.+-|.+.+-
T Consensus 162 ~~gi~gvPtfvv~g~~~~G~~~l~ 185 (192)
T cd03022 162 ARGVFGVPTFVVDGEMFWGQDRLD 185 (192)
T ss_pred HcCCCcCCeEEECCeeecccccHH
Confidence 348999999999999876766654
No 269
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=61.32 E-value=30 Score=28.00 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=15.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHH
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQ 37 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~ 37 (228)
..|+.|..+|||.|......|.
T Consensus 27 ~~ll~f~~t~Cp~c~~~~~~l~ 48 (171)
T cd02969 27 ALVVMFICNHCPYVKAIEDRLN 48 (171)
T ss_pred EEEEEEECCCCccHHHHHHHHH
Confidence 3577778899999986444443
No 270
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=60.92 E-value=12 Score=30.63 Aligned_cols=23 Identities=13% Similarity=0.288 Sum_probs=14.8
Q ss_pred CCCEEEEE--cCCChhHHHHHHHHH
Q psy1894 15 SEKILIFS--KSYCPYCKMAKDVFQ 37 (228)
Q Consensus 15 ~~~VvIYt--k~~CP~C~~ak~~L~ 37 (228)
...++||- .+|||.|...-..|.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~ 53 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFS 53 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHH
Confidence 34555555 579999987554443
No 271
>KOG0190|consensus
Probab=58.70 E-value=4.5 Score=39.74 Aligned_cols=26 Identities=19% Similarity=0.517 Sum_probs=21.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCC
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTP 43 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y 43 (228)
.+-|..|||++|.+..-++++++-.|
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHHh
Confidence 56688899999999998888876555
No 272
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=57.18 E-value=15 Score=30.64 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=21.1
Q ss_pred cCCCEEEEE--cCCChhHHHHHHH-------HHHcCCCCEEEEccC
Q psy1894 14 ASEKILIFS--KSYCPYCKMAKDV-------FQKLKVTPKTVELDH 50 (228)
Q Consensus 14 ~~~~VvIYt--k~~CP~C~~ak~~-------L~~~gI~y~~idVd~ 50 (228)
....++||. ..|||.|..--.. |.+.|+.+-.+.+|.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 344566665 6899999864333 334465544444443
No 273
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=56.75 E-value=21 Score=28.37 Aligned_cols=74 Identities=19% Similarity=0.424 Sum_probs=45.9
Q ss_pred ChhHHHHHHHHHHc-----CCCCEEEEccCCCCchHHHHHHHHHhC--CCCCCccccCCCcccchhhhhccccccccCcc
Q psy1894 26 CPYCKMAKDVFQKL-----KVTPKTVELDHRDDGDSIQDVLLEITG--ARSQPSDNDLEEKPKAEKKILEIPVEAVAKPR 98 (228)
Q Consensus 26 CP~C~~ak~~L~~~-----gI~y~~idVd~~~d~~e~~eeL~~~sg--~~tVP~VfI~Ge~IGG~d~L~~~~v~~v~k~~ 98 (228)
||+|..+..+|... .++...++.-. + +.++....| .-+.|+++.++..-.-.+.
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R-P-----R~~vi~llGE~~QslPvLVL~~~~~~~~~~------------- 84 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPR-P-----RQAVIALLGEANQSLPVLVLADGAPSPDDA------------- 84 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCC-c-----hHHHHHHhChhccCCCEEEeCCCCCCcccc-------------
Confidence 99999999999876 33333333322 1 234555444 5689999887743211111
Q ss_pred ccccCCcCcccccccchhhhhhhccC
Q psy1894 99 IRVDLSVSSTERNFITPNRAMSDFLL 124 (228)
Q Consensus 99 ~~~~~~~~~~~~~lit~t~a~~~y~l 124 (228)
..+..+.+|+-++++-+||-
T Consensus 85 ------~~~~~~rfi~d~~~I~~~La 104 (112)
T PF11287_consen 85 ------GSHGGRRFIDDPRRILRYLA 104 (112)
T ss_pred ------cccCCeEEeCCHHHHHHHHH
Confidence 22234478999999988874
No 274
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=56.12 E-value=22 Score=28.85 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=39.8
Q ss_pred HHhcCC-CEEEEEcCC---ChhHHHHHHHHHHc----C---CCCEEEEccCCCCchHHHHHHHHHhCCCCCCcc--ccCC
Q psy1894 11 DLIASE-KILIFSKSY---CPYCKMAKDVFQKL----K---VTPKTVELDHRDDGDSIQDVLLEITGARSQPSD--NDLE 77 (228)
Q Consensus 11 ~ii~~~-~VvIYtk~~---CP~C~~ak~~L~~~----g---I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V--fI~G 77 (228)
..+... ..++|.... +|.+..+--+|.++ + +.+-.+|+|.. .++...+|..++|++ |=||
T Consensus 29 ~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~-------~~LA~~fgV~siPTLl~FkdG 101 (132)
T PRK11509 29 DWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-------EAIGDRFGVFRFPATLVFTGG 101 (132)
T ss_pred HHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC-------HHHHHHcCCccCCEEEEEECC
Confidence 333443 344444333 77777666666543 3 33444555554 358889999999998 5588
Q ss_pred Ccccc
Q psy1894 78 EKPKA 82 (228)
Q Consensus 78 e~IGG 82 (228)
+.+|-
T Consensus 102 k~v~~ 106 (132)
T PRK11509 102 NYRGV 106 (132)
T ss_pred EEEEE
Confidence 87754
No 275
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=55.21 E-value=31 Score=29.42 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHH---HHcCCCC------EEEEccCC
Q psy1894 15 SEKILIFSKSYCPYCKMAKDVF---QKLKVTP------KTVELDHR 51 (228)
Q Consensus 15 ~~~VvIYtk~~CP~C~~ak~~L---~~~gI~y------~~idVd~~ 51 (228)
...|+-|-.+|||.|..-.-+| .+.|+++ ..+++|..
T Consensus 60 KV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 60 KVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred CEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 3468889999999998655444 5568888 66776654
No 276
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=54.30 E-value=18 Score=28.91 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=30.7
Q ss_pred CChhHH-----------HHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCcc
Q psy1894 25 YCPYCK-----------MAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEKP 80 (228)
Q Consensus 25 ~CP~C~-----------~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~I 80 (228)
.|+-|. .++..|..+||......+...+ +++...+ -..|.|.|||..|
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~------~~~~~~~--~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDE------EEFARQP--LESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECCh------HHHhhcc--cCCCeeeECCEeh
Confidence 788886 3445567789875444443332 1233322 7889999999977
No 277
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=54.20 E-value=6.3 Score=30.48 Aligned_cols=25 Identities=8% Similarity=-0.149 Sum_probs=19.9
Q ss_pred HHhCCCCCCccccCCCcccchhhhh
Q psy1894 63 EITGARSQPSDNDLEEKPKAEKKIL 87 (228)
Q Consensus 63 ~~sg~~tVP~VfI~Ge~IGG~d~L~ 87 (228)
...|...+|+++|||+.+-|..+..
T Consensus 123 ~~~gi~gtPt~~v~g~~~~G~~~~~ 147 (154)
T cd03023 123 RALGITGTPAFIIGDTVIPGAVPAD 147 (154)
T ss_pred HHcCCCcCCeEEECCEEecCCCCHH
Confidence 3458899999999999888866544
No 278
>KOG0191|consensus
Probab=50.89 E-value=20 Score=33.29 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=34.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHcC------CCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKLK------VTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~g------I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
.-++.|..|||++|+.....+.+.. ..+....+|.+ ....+....+...+|++.+
T Consensus 164 ~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~-----~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 164 DWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT-----VHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred ceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc-----hHHHHhhhhcccCCceEEE
Confidence 3588888999999998866665443 33444445433 1123555567778888733
No 279
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=50.85 E-value=27 Score=34.98 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=43.1
Q ss_pred HHHHHHhcCCC----EEEEEcCCChhHHHHHHHHH--------HcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccc
Q psy1894 7 QFVQDLIASEK----ILIFSKSYCPYCKMAKDVFQ--------KLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDN 74 (228)
Q Consensus 7 ~~l~~ii~~~~----VvIYtk~~CP~C~~ak~~L~--------~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~Vf 74 (228)
.++++.+.+++ .+=|+.+||--|+..+...- -.++-.-..|+..++ ++.++ +.+.+|...+|.++
T Consensus 463 ~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~--p~~~~-lLk~~~~~G~P~~~ 539 (569)
T COG4232 463 AELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTAND--PAITA-LLKRLGVFGVPTYL 539 (569)
T ss_pred HHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCC--HHHHH-HHHHcCCCCCCEEE
Confidence 36777777765 33388999999997765542 224434445665553 56665 55567999999984
Q ss_pred c
Q psy1894 75 D 75 (228)
Q Consensus 75 I 75 (228)
+
T Consensus 540 f 540 (569)
T COG4232 540 F 540 (569)
T ss_pred E
Confidence 3
No 280
>PRK15000 peroxidase; Provisional
Probab=50.70 E-value=27 Score=29.70 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=15.3
Q ss_pred cCCCEEEEEcC--CChhHHHHHHHH
Q psy1894 14 ASEKILIFSKS--YCPYCKMAKDVF 36 (228)
Q Consensus 14 ~~~~VvIYtk~--~CP~C~~ak~~L 36 (228)
....+++|..+ |||.|..--..|
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l 57 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAF 57 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHH
Confidence 45567777766 699998744333
No 281
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=50.50 E-value=18 Score=30.64 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=20.4
Q ss_pred CCEEE--EEcCCChhHHHHHHH-------HHHcCCCCEEEEccC
Q psy1894 16 EKILI--FSKSYCPYCKMAKDV-------FQKLKVTPKTVELDH 50 (228)
Q Consensus 16 ~~VvI--Ytk~~CP~C~~ak~~-------L~~~gI~y~~idVd~ 50 (228)
..+++ |-.+|||.|..--.. |++.|+.+--+.+|.
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 34555 566789999864333 344566544455554
No 282
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=50.17 E-value=45 Score=25.84 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=26.9
Q ss_pred CCCEEEE-EcCC-ChhHHHHHHHHHHcC---CCCEEEEccCCCCchHHHHHHHHHhCCCCCCc
Q psy1894 15 SEKILIF-SKSY-CPYCKMAKDVFQKLK---VTPKTVELDHRDDGDSIQDVLLEITGARSQPS 72 (228)
Q Consensus 15 ~~~VvIY-tk~~-CP~C~~ak~~L~~~g---I~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~ 72 (228)
...++|+ -.+| ||.|..--..|.++- -.+..+-|..++ .+...++.+..+...+|.
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~--~~~~~~~~~~~~~~~~~~ 86 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADL--PFAQKRWCGAEGVDNVTT 86 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCC--HHHHHHHHHhcCCCCceE
Confidence 4445555 4445 799987655553321 134555554432 222234444444444553
No 283
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=50.05 E-value=28 Score=27.51 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=27.2
Q ss_pred cCCCEEEEEc--CCChhHHHHH-------HHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcc
Q psy1894 14 ASEKILIFSK--SYCPYCKMAK-------DVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSD 73 (228)
Q Consensus 14 ~~~~VvIYtk--~~CP~C~~ak-------~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V 73 (228)
+...++|+-. .|||.|.... ..+...|+ ..+-|..++. .++. ++.+..+ .++|.+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v--~vi~Is~d~~-~~~~-~~~~~~~-~~~~~l 92 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGV--VVLGISTDKP-EKLS-RFAEKEL-LNFTLL 92 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCCCH-HHHH-HHHHHhC-CCCeEE
Confidence 4455666554 3799996432 23334454 4455544431 3333 3444444 356644
No 284
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=49.12 E-value=17 Score=29.55 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=25.9
Q ss_pred CEEEEEcCCChhHHHHHHHHH----Hc-CCCCEEEEccCC
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQ----KL-KVTPKTVELDHR 51 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~----~~-gI~y~~idVd~~ 51 (228)
+|++|.-..||||-.+...|. .+ ++.++.+.+.-.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 488999999999976665554 45 777777766544
No 285
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.91 E-value=17 Score=32.13 Aligned_cols=24 Identities=33% Similarity=0.714 Sum_probs=18.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKL 39 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~ 39 (228)
.+|.+|+-.-||+|---+.-|++.
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHHH
Confidence 368888888899998776666654
No 286
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=48.37 E-value=20 Score=26.48 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Q psy1894 152 RKDVEAKAIQVWGSKERLLQERLK 175 (228)
Q Consensus 152 ~~~ve~~a~~~wgs~e~l~~e~~~ 175 (228)
.-++-..|+.++||..++++|.+|
T Consensus 7 ~p~~nk~sl~~f~S~~ai~~E~~R 30 (77)
T PF08412_consen 7 QPGDNKFSLRVFGSKKAIEKEKER 30 (77)
T ss_pred ccccCHHHHHHHccHHHHHHHHHH
Confidence 345667899999999999888655
No 287
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=48.07 E-value=13 Score=33.45 Aligned_cols=64 Identities=11% Similarity=0.029 Sum_probs=37.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHc---CCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc--CCCcccchhhhh
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKL---KVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND--LEEKPKAEKKIL 87 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~---gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI--~Ge~IGG~d~L~ 87 (228)
|+-+..+++|-|..+-..|..+ -....++.|..... + +...++...+|+|+| +|..+|.+-.|.
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~-~-----~~~~f~~~~LPtllvYk~G~l~~~~V~l~ 218 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKC-P-----ASENFPDKNLPTLLVYKNGDLIGNFVGLT 218 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGC-C-----TTTTS-TTC-SEEEEEETTEEEEEECTGG
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhcc-C-----cccCCcccCCCEEEEEECCEEEEeEEehH
Confidence 6667889999999998888755 22334444433210 0 233356689999844 888666544443
No 288
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=46.85 E-value=39 Score=25.57 Aligned_cols=38 Identities=5% Similarity=0.109 Sum_probs=28.3
Q ss_pred CChhHHHHHHHHhcCC----CEEEEEcCCChhHHHHHHHHHHc
Q psy1894 1 MNPASKQFVQDLIASE----KILIFSKSYCPYCKMAKDVFQKL 39 (228)
Q Consensus 1 ~~~~~~~~l~~ii~~~----~VvIYtk~~CP~C~~ak~~L~~~ 39 (228)
++++.++.|+.+.+.. .+.+|+.++ ++|..++++|++.
T Consensus 2 l~~~~~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~ 43 (94)
T cd02974 2 LDANLKQQLKAYLERLENPVELVASLDDS-EKSAELLELLEEI 43 (94)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHH
Confidence 3567777777777653 355677666 9999999999865
No 289
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=45.77 E-value=64 Score=26.30 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=25.1
Q ss_pred CEEEEEcCC-ChhHHHHHHHHHH----cCCCCEEEEccCCCCchHHHHHHHHHhCC
Q psy1894 17 KILIFSKSY-CPYCKMAKDVFQK----LKVTPKTVELDHRDDGDSIQDVLLEITGA 67 (228)
Q Consensus 17 ~VvIYtk~~-CP~C~~ak~~L~~----~gI~y~~idVd~~~d~~e~~eeL~~~sg~ 67 (228)
-|+.|-.+| ||.|..-...|.+ .+ .+..+-|..++ +....++.+..|.
T Consensus 47 vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~--~~~~~~f~~~~~~ 99 (167)
T PRK00522 47 KVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADL--PFAQKRFCGAEGL 99 (167)
T ss_pred EEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCC--HHHHHHHHHhCCC
Confidence 344555556 9999875444433 22 35566665442 2223445555553
No 290
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=44.09 E-value=79 Score=26.67 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=30.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCC
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDD 53 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d 53 (228)
|+|=+++.-+.-+.+-..|+++||+|+..-+..+-.
T Consensus 7 IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRT 42 (162)
T COG0041 7 IIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRT 42 (162)
T ss_pred EEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCC
Confidence 566677778888999999999999999999988744
No 291
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=42.96 E-value=1.3e+02 Score=24.52 Aligned_cols=59 Identities=5% Similarity=-0.072 Sum_probs=39.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc---CCCcc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND---LEEKP 80 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI---~Ge~I 80 (228)
.+.+++-+.=..=..++.+++++++.+..+.+..+. ...+...+|...+|+.|+ +|+.+
T Consensus 65 ~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~-----~~~l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 65 QLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEF-----RRELEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCceeecccchH-----HHHHHHHcCCCCCCEEEEECCCCcEE
Confidence 455555554444456889999999987666554321 235777889999999866 56655
No 292
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=42.77 E-value=40 Score=32.81 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=47.5
Q ss_pred cCCChhHHHHHHHHHHc--CC-CCEEEEccCCCCchHHHHHHHH---HhCC--CCCCccc---c----CCCcccchhhhh
Q psy1894 23 KSYCPYCKMAKDVFQKL--KV-TPKTVELDHRDDGDSIQDVLLE---ITGA--RSQPSDN---D----LEEKPKAEKKIL 87 (228)
Q Consensus 23 k~~CP~C~~ak~~L~~~--gI-~y~~idVd~~~d~~e~~eeL~~---~sg~--~tVP~Vf---I----~Ge~IGG~d~L~ 87 (228)
+..|||=.+|.-+-+.+ ++ +|..+.|-.+|+. ..+.|.+ .+|| ..-|.|. + .|-.|||+.|+.
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~--w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~ 78 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDE--WEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFL 78 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHH--HHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHH
Confidence 36899999887776654 44 4888999888753 3444444 3454 5779884 3 466999999998
Q ss_pred cccc
Q psy1894 88 EIPV 91 (228)
Q Consensus 88 ~~~v 91 (228)
++.-
T Consensus 79 e~~~ 82 (452)
T cd05295 79 EYAE 82 (452)
T ss_pred HHHH
Confidence 8743
No 293
>PRK13189 peroxiredoxin; Provisional
Probab=41.70 E-value=32 Score=29.80 Aligned_cols=37 Identities=16% Similarity=0.406 Sum_probs=20.7
Q ss_pred cCCCEEE--EEcCCChhHHHHH-------HHHHHcCCCCEEEEccC
Q psy1894 14 ASEKILI--FSKSYCPYCKMAK-------DVFQKLKVTPKTVELDH 50 (228)
Q Consensus 14 ~~~~VvI--Ytk~~CP~C~~ak-------~~L~~~gI~y~~idVd~ 50 (228)
....+++ |-.+|||.|..-- .-|++.|+..--+.+|.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 3444555 4578899998533 23344565544444444
No 294
>PRK13599 putative peroxiredoxin; Provisional
Probab=40.85 E-value=31 Score=29.87 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=20.2
Q ss_pred cCCCEE--EEEcCCChhHHHHH-------HHHHHcCCCCEEEEccC
Q psy1894 14 ASEKIL--IFSKSYCPYCKMAK-------DVFQKLKVTPKTVELDH 50 (228)
Q Consensus 14 ~~~~Vv--IYtk~~CP~C~~ak-------~~L~~~gI~y~~idVd~ 50 (228)
....++ .|-.+|||.|..-- .-|.+.|+..--+.+|.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~ 72 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ 72 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 334444 44566799998633 33344565544445444
No 295
>PRK13190 putative peroxiredoxin; Provisional
Probab=39.59 E-value=33 Score=29.11 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=20.3
Q ss_pred CCCEEE--EEcCCChhHHHHHHHHH-------HcCCCCEEEEccC
Q psy1894 15 SEKILI--FSKSYCPYCKMAKDVFQ-------KLKVTPKTVELDH 50 (228)
Q Consensus 15 ~~~VvI--Ytk~~CP~C~~ak~~L~-------~~gI~y~~idVd~ 50 (228)
...++| |-.+|||.|..--..|. +.|+..--+.+|.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~ 71 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDS 71 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 334555 56788999985443343 3455444444443
No 296
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=37.89 E-value=54 Score=29.51 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=24.0
Q ss_pred HHHhcCCCEEEEE--cCCChhHHH-------HHHHHHHcCCCCEEEEccC
Q psy1894 10 QDLIASEKILIFS--KSYCPYCKM-------AKDVFQKLKVTPKTVELDH 50 (228)
Q Consensus 10 ~~ii~~~~VvIYt--k~~CP~C~~-------ak~~L~~~gI~y~~idVd~ 50 (228)
.+......|++|. ..|||.|.. ...-+.+.|+.+--+.+|.
T Consensus 93 sd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 93 SDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3444555677774 478999986 3333445565544444443
No 297
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=37.74 E-value=22 Score=29.00 Aligned_cols=22 Identities=18% Similarity=0.549 Sum_probs=17.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHH
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQK 38 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~ 38 (228)
+|.+|.-+.||||-.+...|++
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~ 23 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEK 23 (193)
T ss_pred eEEEEECCCCchhhCchHHHHH
Confidence 5889999999999877666653
No 298
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=37.08 E-value=79 Score=25.96 Aligned_cols=36 Identities=6% Similarity=-0.030 Sum_probs=29.3
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccC
Q psy1894 14 ASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDH 50 (228)
Q Consensus 14 ~~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~ 50 (228)
...+|++|-.++|+.+..+-..|..+|..- ...++.
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~-V~~l~G 150 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYSN-VYWYPD 150 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCcc-eEEecC
Confidence 557999999999999999999999999763 344544
No 299
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=36.52 E-value=1.1e+02 Score=27.62 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=56.5
Q ss_pred CChhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCC-chHHHHHHHHHhCCCCCCccccCCCc
Q psy1894 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDD-GDSIQDVLLEITGARSQPSDNDLEEK 79 (228)
Q Consensus 1 ~~~~~~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d-~~e~~eeL~~~sg~~tVP~VfI~Ge~ 79 (228)
||......+++.+...+.++ +.-..-....+-.++...|++|-.+|.++.+- -..+...+.........|.|-|.+.-
T Consensus 1 ~~~~~~n~lk~~L~~G~~~~-G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~ 79 (267)
T PRK10128 1 MNALLSNPFKEGLRKGEVQI-GLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS 79 (267)
T ss_pred CCcccchHHHHHHHcCCceE-EEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC
Confidence 56666677888887776533 22112333577888899999999999988652 23444444444456677877776542
Q ss_pred ccchhhhhccccccccCc
Q psy1894 80 PKAEKKILEIPVEAVAKP 97 (228)
Q Consensus 80 IGG~d~L~~~~v~~v~k~ 97 (228)
-....-+.+..+.++..+
T Consensus 80 ~~~i~r~LD~GA~GIivP 97 (267)
T PRK10128 80 KPLIKQVLDIGAQTLLIP 97 (267)
T ss_pred HHHHHHHhCCCCCeeEec
Confidence 222222334444444433
No 300
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=36.24 E-value=1.1e+02 Score=24.67 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=28.9
Q ss_pred HHHHhcCCCEEEEEcCC--ChhHHHH--------HHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCC
Q psy1894 9 VQDLIASEKILIFSKSY--CPYCKMA--------KDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGA 67 (228)
Q Consensus 9 l~~ii~~~~VvIYtk~~--CP~C~~a--------k~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~ 67 (228)
+.+.....+++||.-|. ||.|..- ..-|.+.|+. ..+-|..++ .....++.+..+.
T Consensus 23 L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~-~V~~iS~D~--~~~~~~~~~~~~~ 88 (155)
T cd03013 23 LSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVD-EVICVSVND--PFVMKAWGKALGA 88 (155)
T ss_pred HHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCC-EEEEEECCC--HHHHHHHHHhhCC
Confidence 33434455777766665 9999764 3344455652 234444432 2333445554443
No 301
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=34.88 E-value=43 Score=28.34 Aligned_cols=18 Identities=11% Similarity=0.205 Sum_probs=12.0
Q ss_pred CCEEEE-E-cCCChhHHHHH
Q psy1894 16 EKILIF-S-KSYCPYCKMAK 33 (228)
Q Consensus 16 ~~VvIY-t-k~~CP~C~~ak 33 (228)
..+++| . ..|||.|..--
T Consensus 32 k~vvL~F~P~~~~p~C~~el 51 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTEL 51 (187)
T ss_pred CeEEEEEECCCCCCcCHHHH
Confidence 345555 3 68899998733
No 302
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.79 E-value=1.8e+02 Score=21.52 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=39.1
Q ss_pred HHHHHHhcCCCEEEEEcCCChh--HHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHH
Q psy1894 7 QFVQDLIASEKILIFSKSYCPY--CKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLL 62 (228)
Q Consensus 7 ~~l~~ii~~~~VvIYtk~~CP~--C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~ 62 (228)
..|...+....++|+.++.+.+ +..++...++.|+|+-...-..- .++..+|.
T Consensus 40 ~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~---~~l~~~l~ 94 (97)
T PF10087_consen 40 SRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGV---SSLERALE 94 (97)
T ss_pred hHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCH---HHHHHHHH
Confidence 4588889999999888888665 57899999999999887753322 34444444
No 303
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=34.69 E-value=54 Score=31.72 Aligned_cols=38 Identities=5% Similarity=0.114 Sum_probs=29.3
Q ss_pred CChhHHHHHHHHhcCC----CEEEEEcCCChhHHHHHHHHHHc
Q psy1894 1 MNPASKQFVQDLIASE----KILIFSKSYCPYCKMAKDVFQKL 39 (228)
Q Consensus 1 ~~~~~~~~l~~ii~~~----~VvIYtk~~CP~C~~ak~~L~~~ 39 (228)
+++++++.|+.+.... .+++|+. .|++|..++.+|++.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (517)
T PRK15317 2 LDANLKTQLKQYLELLERPIELVASLD-DSEKSAELKELLEEI 43 (517)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEEeC-CCchHHHHHHHHHHH
Confidence 4677888888887764 3555665 799999999999875
No 304
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=33.47 E-value=62 Score=30.25 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCC--CchHHHHHHHHHhCCCCCCcccc---CCCcccchhhhhcc
Q psy1894 15 SEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD--DGDSIQDVLLEITGARSQPSDND---LEEKPKAEKKILEI 89 (228)
Q Consensus 15 ~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~--d~~e~~eeL~~~sg~~tVP~VfI---~Ge~IGG~d~L~~~ 89 (228)
..+.++|....+.+|. .....-+|+....|.+|.+. +..+++..+.+......+|.++| +...-|..|+|.++
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i 216 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEI 216 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHH
T ss_pred ccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHH
Confidence 3568899989899997 55667778887777777642 33556666666555567784332 44455778888765
No 305
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=32.88 E-value=28 Score=29.47 Aligned_cols=20 Identities=10% Similarity=-0.215 Sum_probs=15.9
Q ss_pred HHhCCCCCCccccCCCcccc
Q psy1894 63 EITGARSQPSDNDLEEKPKA 82 (228)
Q Consensus 63 ~~sg~~tVP~VfI~Ge~IGG 82 (228)
...|...+|+++|||+++-+
T Consensus 161 ~~~gI~gtPtfiInGky~v~ 180 (207)
T PRK10954 161 ADLQLRGVPAMFVNGKYMVN 180 (207)
T ss_pred HHcCCCCCCEEEECCEEEEc
Confidence 34578899999999997543
No 306
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=32.84 E-value=23 Score=28.73 Aligned_cols=53 Identities=6% Similarity=0.068 Sum_probs=29.1
Q ss_pred HHHHHHHcCCCCEEEEccCCCCchHHHHH------HHHHhCCCCCCccccCCC-cccchhhh
Q psy1894 32 AKDVFQKLKVTPKTVELDHRDDGDSIQDV------LLEITGARSQPSDNDLEE-KPKAEKKI 86 (228)
Q Consensus 32 ak~~L~~~gI~y~~idVd~~~d~~e~~ee------L~~~sg~~tVP~VfI~Ge-~IGG~d~L 86 (228)
...++.+.|++...++-..++ ++..+. .....|...+|+++|||+ .+-|.+.+
T Consensus 126 l~~~~~~~Gld~~~~~~~~~~--~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~ 185 (193)
T PF01323_consen 126 LAEIAEEAGLDPDEFDAALDS--PEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRL 185 (193)
T ss_dssp HHHHHHHTT--HHHHHHHHTS--HHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSH
T ss_pred HHHHHHHcCCcHHHHHHHhcc--hHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCH
Confidence 456667777754433211111 222222 233458999999999999 56565544
No 307
>PRK13191 putative peroxiredoxin; Provisional
Probab=32.80 E-value=51 Score=28.45 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=21.3
Q ss_pred cCCCEEE--EEcCCChhHHHHHHHH-------HHcCCCCEEEEccC
Q psy1894 14 ASEKILI--FSKSYCPYCKMAKDVF-------QKLKVTPKTVELDH 50 (228)
Q Consensus 14 ~~~~VvI--Ytk~~CP~C~~ak~~L-------~~~gI~y~~idVd~ 50 (228)
....++| |-.+|||.|..--..| .+.|+.+--+.+|.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds 77 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS 77 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3444554 4678899998744444 34465544445544
No 308
>PRK04195 replication factor C large subunit; Provisional
Probab=32.69 E-value=1.8e+02 Score=28.08 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=35.3
Q ss_pred hhHHHHHHHHhc-------CCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEcc
Q psy1894 3 PASKQFVQDLIA-------SEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELD 49 (228)
Q Consensus 3 ~~~~~~l~~ii~-------~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd 49 (228)
+.+.+.|...+. ...+.+|+-+||+=-..|..+.+++|.++-+++..
T Consensus 20 ~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 20 EKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccc
Confidence 344455555544 45799999999999999999999998776666554
No 309
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=32.54 E-value=42 Score=23.05 Aligned_cols=53 Identities=11% Similarity=0.002 Sum_probs=27.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCC
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEE 78 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge 78 (228)
+.+|+.+.=..+..++.+|++.||++...+-.... . ... .|....+.|+|..+
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~--~-----~g~-~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSG--Y-----AGE-PGTGGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----S--S---------S--SSSEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccch--h-----hcc-cCccCceEEEECHH
Confidence 46788788788899999999999998877655431 0 111 24444477777654
No 310
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=32.39 E-value=26 Score=27.99 Aligned_cols=20 Identities=5% Similarity=-0.253 Sum_probs=15.8
Q ss_pred HHhCCCCCCccccCCCcccc
Q psy1894 63 EITGARSQPSDNDLEEKPKA 82 (228)
Q Consensus 63 ~~sg~~tVP~VfI~Ge~IGG 82 (228)
...|...+|+++|||+.+-+
T Consensus 137 ~~~gi~gTPt~iInG~~~~~ 156 (178)
T cd03019 137 KKYKITGVPAFVVNGKYVVN 156 (178)
T ss_pred HHcCCCCCCeEEECCEEEEC
Confidence 34588999999999996533
No 311
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=32.39 E-value=79 Score=26.55 Aligned_cols=91 Identities=13% Similarity=0.091 Sum_probs=47.5
Q ss_pred hHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHHcCCC------------CEEEEccCCCCchHHHHHHHHHhCCCCCC
Q psy1894 4 ASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVT------------PKTVELDHRDDGDSIQDVLLEITGARSQP 71 (228)
Q Consensus 4 ~~~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~gI~------------y~~idVd~~~d~~e~~eeL~~~sg~~tVP 71 (228)
.+..-|..+.. ..|.|-..|.+..=..|+++|+.++|. |...+|...+-...+ ..+.+.+|...-=
T Consensus 49 dv~~iL~~L~~-~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf-~~i~~~tgI~y~e 126 (169)
T PF12689_consen 49 DVPEILQELKE-RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHF-RRIHRKTGIPYEE 126 (169)
T ss_dssp THHHHHHHHHH-CT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHH-HHHHHHH---GGG
T ss_pred CHHHHHHHHHH-CCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHH-HHHHHhcCCChhH
Confidence 34444444443 444444444433338999999999988 344555554222233 4567777877667
Q ss_pred ccccCCCcccchhhhhccccccccCc
Q psy1894 72 SDNDLEEKPKAEKKILEIPVEAVAKP 97 (228)
Q Consensus 72 ~VfI~Ge~IGG~d~L~~~~v~~v~k~ 97 (228)
.+|+|++.. ..+++..+.|-.+.-+
T Consensus 127 MlFFDDe~~-N~~~v~~lGV~~v~v~ 151 (169)
T PF12689_consen 127 MLFFDDESR-NIEVVSKLGVTCVLVP 151 (169)
T ss_dssp EEEEES-HH-HHHHHHTTT-EEEE-S
T ss_pred EEEecCchh-cceeeEecCcEEEEeC
Confidence 899999976 4555666777655433
No 312
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=32.23 E-value=2.2e+02 Score=21.49 Aligned_cols=61 Identities=8% Similarity=0.009 Sum_probs=37.4
Q ss_pred HHHHHHhcCCCEEEEEcCCC-----hhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcccc
Q psy1894 7 QFVQDLIASEKILIFSKSYC-----PYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDND 75 (228)
Q Consensus 7 ~~l~~ii~~~~VvIYtk~~C-----P~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI 75 (228)
+.+.+......+.+++-+.= ..=..+++++++++++|..+. |.+ ..+...+|...+|+.||
T Consensus 46 ~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-D~~-------~~~~~~~~v~~~P~~~v 111 (126)
T cd03012 46 TDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVAN-DND-------YATWRAYGNQYWPALYL 111 (126)
T ss_pred HHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEE-CCc-------hHHHHHhCCCcCCeEEE
Confidence 34444455456777765431 112366778899999987543 332 23556678888999866
No 313
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=31.82 E-value=96 Score=23.96 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=29.0
Q ss_pred HhcCCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCC
Q psy1894 12 LIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHR 51 (228)
Q Consensus 12 ii~~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~ 51 (228)
+-...+|++|-..+...+..+..+|+.+|+. ...++..
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~GG 120 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESLGID--VPLLEGG 120 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeCCc
Confidence 4456789999977777788888999999984 5666543
No 314
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=31.71 E-value=1.4e+02 Score=25.14 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=12.7
Q ss_pred CCEEEEEcCCChhHHH
Q psy1894 16 EKILIFSKSYCPYCKM 31 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ 31 (228)
.-+++|..+||++|..
T Consensus 27 vvLVvf~AS~C~~~~q 42 (183)
T PRK10606 27 VLLIVNVASKCGLTPQ 42 (183)
T ss_pred EEEEEEEeCCCCCcHH
Confidence 3467888999999964
No 315
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=31.39 E-value=41 Score=27.24 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=21.7
Q ss_pred EEEEEcCCChhHHHHHHHHHH----cCCCCEEEEc
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQK----LKVTPKTVEL 48 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~~----~gI~y~~idV 48 (228)
|.+|+-..||||--+...|++ +++.++.+.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 468898999999887776664 4555554443
No 316
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=30.79 E-value=44 Score=25.14 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=12.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHH-HHHHHHHHhhHHHHHHHHHHHHhcc
Q psy1894 156 EAKAIQVWGSKERLLQERLKNEL-ERKYQQQHIFTMKRKLRDYRREQGS 203 (228)
Q Consensus 156 e~~a~~~wgs~e~l~~e~~~r~~-~~~~~~~~~~~~~~~lk~lr~~~~~ 203 (228)
.+.|.++||+ +.+.+..++... .++...+-.-+....+.+|+..+..
T Consensus 3 ~~e~~e~yg~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~ 50 (118)
T PF07739_consen 3 EEEARERYGD-EAYAESEERLASLSKEEWQELQKEWDELFAELAALMEE 50 (118)
T ss_dssp --HHHHH------------------------TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCh-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5678999999 888776555411 1111122222222555666655554
No 317
>KOG4598|consensus
Probab=30.48 E-value=39 Score=35.15 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHHcCC-CCEEEEccCCCCchHHHHHHHHHhC
Q psy1894 6 KQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKV-TPKTVELDHRDDGDSIQDVLLEITG 66 (228)
Q Consensus 6 ~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~gI-~y~~idVd~~~d~~e~~eeL~~~sg 66 (228)
.+.|...-.+....|++..||| ....+ +|.++-+|.+.. .++++.|.+++|
T Consensus 1045 ~deV~~~k~~~sL~i~vRRW~P---------s~~e~~pFQEV~Ld~~~~-~E~Re~LS~ISg 1096 (1203)
T KOG4598|consen 1045 TDEVMIGKPGESLPIMVRRWRP---------STVEVNPFQEVLLDANAE-VEFREALSKISG 1096 (1203)
T ss_pred HhhcccCCCCccchhhheeccc---------cceecCCceeEEecCcch-HHHHHHHHHhcC
Confidence 4444455555679999999999 34444 689999998754 578888888876
No 318
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=30.04 E-value=14 Score=28.24 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=19.8
Q ss_pred cccccchhhhhhhccCCCCCccc
Q psy1894 109 ERNFITPNRAMSDFLLKQSDLEG 131 (228)
Q Consensus 109 ~~~lit~t~a~~~y~l~~~dl~~ 131 (228)
.+.|||..||.+.|-|++++++.
T Consensus 46 ~~Glis~~EA~~rY~Ls~eEf~~ 68 (90)
T PF06627_consen 46 RGGLISVEEACRRYGLSEEEFES 68 (90)
T ss_dssp HCTTS-HHHHHHCTTSSHHHHHH
T ss_pred HcCCCCHHHHHHHhCCCHHHHHH
Confidence 45899999999999999999875
No 319
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=28.86 E-value=1.9e+02 Score=22.42 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=39.7
Q ss_pred hHHHHHHHHhcC---CCEEEEEcCCCh----hHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCC
Q psy1894 4 ASKQFVQDLIAS---EKILIFSKSYCP----YCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARS 69 (228)
Q Consensus 4 ~~~~~l~~ii~~---~~VvIYtk~~CP----~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~t 69 (228)
+.++.+..+-.. ....++.-..-| |-......+++.||.++.+.+..+....++.+.+.+.+....
T Consensus 15 ~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~ 87 (117)
T PF00763_consen 15 ELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPS 87 (117)
T ss_dssp HHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCC
Confidence 344555555544 345555445444 445566778899999999999877666777777777764433
No 320
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=28.49 E-value=1.5e+02 Score=26.33 Aligned_cols=75 Identities=11% Similarity=0.074 Sum_probs=46.1
Q ss_pred hhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCC-CchHHHHHHHHHhCCCCCCccccCCC
Q psy1894 3 PASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQDVLLEITGARSQPSDNDLEE 78 (228)
Q Consensus 3 ~~~~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~-d~~e~~eeL~~~sg~~tVP~VfI~Ge 78 (228)
.++...+++.+...+.+ |+.-..-.+..+-+++...|++|-.+|.++.+ +-..+.+-+.........|.|-|.+.
T Consensus 4 ~~~~n~lk~~l~~g~~~-~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 4 DVFPNKFKAALAAKQVQ-IGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred CccCHHHHHHHHcCCce-EEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 34455666776666532 32111223347888899999999999998865 32344443444445667788777554
No 321
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=28.42 E-value=2.3e+02 Score=20.35 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=25.4
Q ss_pred ChhHHHHHHHHhcC-CCEEEEEcCCChhHHHHHHHHHHcCC
Q psy1894 2 NPASKQFVQDLIAS-EKILIFSKSYCPYCKMAKDVFQKLKV 41 (228)
Q Consensus 2 ~~~~~~~l~~ii~~-~~VvIYtk~~CP~C~~ak~~L~~~gI 41 (228)
.+.+.+.++.+-+. .+|.++|..+ -..+..+++..|+
T Consensus 26 ~~~~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~~~~~~~ 63 (139)
T cd01427 26 YPGVKEALKELKEKGIKLALATNKS---RREVLELLEELGL 63 (139)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCch---HHHHHHHHHHcCC
Confidence 35677788777775 4666666554 4566777888887
No 322
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=28.21 E-value=1.2e+02 Score=25.09 Aligned_cols=53 Identities=15% Similarity=-0.033 Sum_probs=32.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCc-cccC
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPS-DNDL 76 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~-VfI~ 76 (228)
.+.+++-+....=..+.+++++++++|..+-.|.+. .+...+|...+|+ ++||
T Consensus 97 ~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-------~~~~~~gv~~~P~t~vid 150 (185)
T PRK15412 97 GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDG-------MLGLDLGVYGAPETFLID 150 (185)
T ss_pred CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCc-------cHHHhcCCCcCCeEEEEC
Confidence 344444443222246788999999999865555431 2445678899995 5565
No 323
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=28.16 E-value=1.5e+02 Score=22.48 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHH
Q psy1894 165 SKERLLQERLKNELERKYQQQHIFTMKRKLRDYR 198 (228)
Q Consensus 165 s~e~l~~e~~~r~~~~~~~~~~~~~~~~~lk~lr 198 (228)
+.|.|.+|.+.-+.+.+....+...++.+++.|-
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888877777777888888888774
No 324
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=27.91 E-value=1.2e+02 Score=28.29 Aligned_cols=84 Identities=14% Similarity=-0.047 Sum_probs=60.0
Q ss_pred hHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEcc----------CCCCc-hHHHHHHHHHhCCCCCCc
Q psy1894 4 ASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELD----------HRDDG-DSIQDVLLEITGARSQPS 72 (228)
Q Consensus 4 ~~~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd----------~~~d~-~e~~eeL~~~sg~~tVP~ 72 (228)
.+.+.++.++...=+-||+-+.|.-...+..+++.+.||+-....+ ..|+- .++. .+...+||+.+=.
T Consensus 51 ~~~~~~C~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~l~~Ai~-diI~~~~Wr~~~~ 129 (372)
T cd06387 51 SVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPALKGAIL-SLLAHYKWEKFVY 129 (372)
T ss_pred HHHHHHHHHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChhHHHHHH-HHHHhcCCCEEEE
Confidence 3578899999999999999999998899999999999998654322 22211 2222 2444569999988
Q ss_pred cccCCCcccchhhhhc
Q psy1894 73 DNDLEEKPKAEKKILE 88 (228)
Q Consensus 73 VfI~Ge~IGG~d~L~~ 88 (228)
|+-++.-++...+|.+
T Consensus 130 iYd~d~gl~~Lq~L~~ 145 (372)
T cd06387 130 LYDTERGFSILQAIME 145 (372)
T ss_pred EecCchhHHHHHHHHH
Confidence 8866665655555543
No 325
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=27.09 E-value=87 Score=30.34 Aligned_cols=38 Identities=8% Similarity=0.133 Sum_probs=28.7
Q ss_pred CChhHHHHHHHHhcCC--C--EEEEEcCCChhHHHHHHHHHHc
Q psy1894 1 MNPASKQFVQDLIASE--K--ILIFSKSYCPYCKMAKDVFQKL 39 (228)
Q Consensus 1 ~~~~~~~~l~~ii~~~--~--VvIYtk~~CP~C~~ak~~L~~~ 39 (228)
+++++++.|+++.... + +++|+. .|++|...+++|++.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (515)
T TIGR03140 2 LDQSLLAQLKSYLASLENPVTLVLSAG-SHEKSKELLELLDEI 43 (515)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEEeC-CCchhHHHHHHHHHH
Confidence 4677888888877764 4 444664 799999999999865
No 326
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=26.90 E-value=44 Score=30.04 Aligned_cols=25 Identities=16% Similarity=0.509 Sum_probs=16.5
Q ss_pred CEEEEEcCCChhHHHHHHHH----HHcCC
Q psy1894 17 KILIFSKSYCPYCKMAKDVF----QKLKV 41 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L----~~~gI 41 (228)
.|+..+..|||+|...+..| ...|-
T Consensus 61 ~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 61 EVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred EEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 35555677799998766544 55664
No 327
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.57 E-value=34 Score=29.32 Aligned_cols=27 Identities=11% Similarity=-0.041 Sum_probs=20.4
Q ss_pred HHHhCCCCCCccccCCCcccchhhhhc
Q psy1894 62 LEITGARSQPSDNDLEEKPKAEKKILE 88 (228)
Q Consensus 62 ~~~sg~~tVP~VfI~Ge~IGG~d~L~~ 88 (228)
....|....|++||+|..++|..++.+
T Consensus 208 a~~~gv~gTPt~~v~~~~~~g~~~~~~ 234 (244)
T COG1651 208 AQQLGVNGTPTFIVNGKLVPGLPDLDE 234 (244)
T ss_pred HHhcCCCcCCeEEECCeeecCCCCHHH
Confidence 334588999999999998888655443
No 328
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=26.53 E-value=2.6e+02 Score=20.52 Aligned_cols=58 Identities=9% Similarity=-0.026 Sum_probs=38.3
Q ss_pred HHHHhcCCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCC------CCCcccc
Q psy1894 9 VQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGAR------SQPSDND 75 (228)
Q Consensus 9 l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~------tVP~VfI 75 (228)
+........+.+++-+..+.= ..+.+++.++++|..+-=... .+.+.+|.. .+|.+||
T Consensus 51 ~~~~~~~~~~~vi~is~d~~~-~~~~~~~~~~~~~~~~~D~~~--------~~~~~~~~~~~~~~~~~p~~~l 114 (124)
T PF00578_consen 51 LYKKYKDKGVQVIGISTDDPE-EIKQFLEEYGLPFPVLSDPDG--------ELAKAFGIEDEKDTLALPAVFL 114 (124)
T ss_dssp HHHHHHTTTEEEEEEESSSHH-HHHHHHHHHTCSSEEEEETTS--------HHHHHTTCEETTTSEESEEEEE
T ss_pred HhhhhccceEEeeeccccccc-chhhhhhhhccccccccCcch--------HHHHHcCCccccCCceEeEEEE
Confidence 334445556666666665554 789999999999888532211 356667766 7888866
No 329
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=26.32 E-value=1.9e+02 Score=28.61 Aligned_cols=52 Identities=23% Similarity=0.334 Sum_probs=39.7
Q ss_pred CChhHHHHHHHHhcCCCEEEEEcCCCh-----hHHHHHHHHHHc-----CCCCEEEEccCCC
Q psy1894 1 MNPASKQFVQDLIASEKILIFSKSYCP-----YCKMAKDVFQKL-----KVTPKTVELDHRD 52 (228)
Q Consensus 1 ~~~~~~~~l~~ii~~~~VvIYtk~~CP-----~C~~ak~~L~~~-----gI~y~~idVd~~~ 52 (228)
+|+.+++.|+.+-+.-.|.+|..+.-| +-..++.+|+++ +|.++++|-..++
T Consensus 35 LS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~ 96 (552)
T TIGR03521 35 LSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEE 96 (552)
T ss_pred cCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcc
Confidence 478899999999888899999877655 346788888765 5777777766554
No 330
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=25.91 E-value=1.9e+02 Score=26.67 Aligned_cols=16 Identities=19% Similarity=0.087 Sum_probs=13.4
Q ss_pred hhccccCCCCceeeee
Q psy1894 211 EKAGLFGLLYPISMLR 226 (228)
Q Consensus 211 ~~~~~~~~~~~~~~~~ 226 (228)
.....|+-||+|.|+-
T Consensus 97 ~~~~~F~~PGkVLHlD 112 (287)
T PF05582_consen 97 KKEEYFERPGKVLHLD 112 (287)
T ss_pred ccccccCCCCeEEEec
Confidence 4668899999999973
No 331
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=25.71 E-value=2.8e+02 Score=24.34 Aligned_cols=59 Identities=10% Similarity=0.047 Sum_probs=38.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCC
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLE 77 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~G 77 (228)
..+++|+-+||+=..-++.+....+.++.............+...+.. ...-..+|||.
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~vl~iDE 89 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTN---LEEGDVLFIDE 89 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHh---cccCCEEEEeh
Confidence 359999999999999999999999988766554322222233333332 22335667776
No 332
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=24.90 E-value=61 Score=27.23 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=19.2
Q ss_pred CCEEEEEc--CCChhHHHHHHHH-------HHcCCCCEEEEccCC
Q psy1894 16 EKILIFSK--SYCPYCKMAKDVF-------QKLKVTPKTVELDHR 51 (228)
Q Consensus 16 ~~VvIYtk--~~CP~C~~ak~~L-------~~~gI~y~~idVd~~ 51 (228)
..++||.. .+||.|......| ...|+.+--+.+|..
T Consensus 37 k~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 37 KWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred CEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 34444444 5677777533333 444665555665543
No 333
>KOG1672|consensus
Probab=24.69 E-value=67 Score=28.16 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCCEE-EEEcCCChhHHHHH---HHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCcc--ccCCC
Q psy1894 5 SKQFVQDLIASEKIL-IFSKSYCPYCKMAK---DVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSD--NDLEE 78 (228)
Q Consensus 5 ~~~~l~~ii~~~~Vv-IYtk~~CP~C~~ak---~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~V--fI~Ge 78 (228)
-+++++...+..+|+ -|..+.---|.-+- ..|+..-+.-.+|-|+..- ...|....+...+|+| |.||.
T Consensus 74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~-----~PFlv~kL~IkVLP~v~l~k~g~ 148 (211)
T KOG1672|consen 74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEK-----APFLVTKLNIKVLPTVALFKNGK 148 (211)
T ss_pred HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEeccc-----CceeeeeeeeeEeeeEEEEEcCE
Confidence 357777776666654 58888866666554 4455555665666555421 1346666788999998 77887
Q ss_pred ---cccchhhhhc
Q psy1894 79 ---KPKAEKKILE 88 (228)
Q Consensus 79 ---~IGG~d~L~~ 88 (228)
.|-|+++|=.
T Consensus 149 ~~D~iVGF~dLGn 161 (211)
T KOG1672|consen 149 TVDYVVGFTDLGN 161 (211)
T ss_pred EEEEEeeHhhcCC
Confidence 4456666643
No 334
>KOG1731|consensus
Probab=24.53 E-value=27 Score=35.10 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=39.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCC----CEEEEccCCCCchHHHHHHHHHhCCCCCCcccc------C---CCcccc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVT----PKTVELDHRDDGDSIQDVLLEITGARSQPSDND------L---EEKPKA 82 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~----y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI------~---Ge~IGG 82 (228)
.+|-|..+||+.|.+-.-.+++.... ...+-|-..+.+.+.-..+-+.++.+.+|.++. + |..+.|
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~ 138 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSG 138 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccC
Confidence 46667779999999877666654322 122222221111222345666789999999855 2 666766
No 335
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=24.37 E-value=2.2e+02 Score=23.39 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=40.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHc--CCCCEEEEccCCCCchHHHHHHHHHhCCCCC-Cc--ccc-CCCcccchhhhhcc
Q psy1894 16 EKILIFSKSYCPYCKMAKDVFQKL--KVTPKTVELDHRDDGDSIQDVLLEITGARSQ-PS--DND-LEEKPKAEKKILEI 89 (228)
Q Consensus 16 ~~VvIYtk~~CP~C~~ak~~L~~~--gI~y~~idVd~~~d~~e~~eeL~~~sg~~tV-P~--VfI-~Ge~IGG~d~L~~~ 89 (228)
...+|+.-..||+|.....+|.++ +-.+....+...+. .++.+.+|...- +- +++ +|+.+-|+|.+.+.
T Consensus 8 p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g-----~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i 82 (137)
T COG3011 8 PDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPG-----QALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRI 82 (137)
T ss_pred CCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchh-----hhHHhhcCCChhhhheeeEecCCceEeccHHHHHH
Confidence 345555558899999999999876 44466666644321 245555553211 22 233 56666666666543
No 336
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.13 E-value=1.8e+02 Score=21.73 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=35.1
Q ss_pred hhHHHHHHHHhcCC-CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHH
Q psy1894 3 PASKQFVQDLIASE-KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEI 64 (228)
Q Consensus 3 ~~~~~~l~~ii~~~-~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~ 64 (228)
|.+.+.|+.+-+.. ++.+.|.++..--......|..+|++...-+|-.. +......|.+.
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts--~~~~~~~l~~~ 77 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITS--GMAAAEYLKEH 77 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEH--HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEECh--HHHHHHHHHhc
Confidence 45678888888875 56666665555556777777999998644222211 23445556654
No 337
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=23.91 E-value=58 Score=26.64 Aligned_cols=20 Identities=35% Similarity=0.806 Sum_probs=16.0
Q ss_pred EEEEEcCCChhHHHHHHHHH
Q psy1894 18 ILIFSKSYCPYCKMAKDVFQ 37 (228)
Q Consensus 18 VvIYtk~~CP~C~~ak~~L~ 37 (228)
|.+|+-..||||--+...|.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~ 20 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLE 20 (201)
T ss_pred CeEEecCcCccHHHHHHHHH
Confidence 56899999999987766664
No 338
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.79 E-value=77 Score=27.06 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=19.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHH
Q psy1894 15 SEKILIFSKSYCPYCKMAKDVFQK 38 (228)
Q Consensus 15 ~~~VvIYtk~~CP~C~~ak~~L~~ 38 (228)
...|++|.-..||+|.+...-+.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 457899999999999766666654
No 339
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=23.47 E-value=50 Score=27.96 Aligned_cols=20 Identities=30% Similarity=0.697 Sum_probs=16.6
Q ss_pred CCCEEEEEcCCChhHHHHHH
Q psy1894 15 SEKILIFSKSYCPYCKMAKD 34 (228)
Q Consensus 15 ~~~VvIYtk~~CP~C~~ak~ 34 (228)
...|+.|..-.||+|.....
T Consensus 38 ~~~VvEffdy~CphC~~~~~ 57 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEE 57 (207)
T ss_pred CCeEEEEeCCCCccHHHhcc
Confidence 34699999999999998654
No 340
>KOG0913|consensus
Probab=23.07 E-value=30 Score=31.03 Aligned_cols=42 Identities=21% Similarity=0.481 Sum_probs=30.6
Q ss_pred HHhcCCCEEEEEcCCChhHHHHHHHHHH-------cCCCCEEEEccCCC
Q psy1894 11 DLIASEKILIFSKSYCPYCKMAKDVFQK-------LKVTPKTVELDHRD 52 (228)
Q Consensus 11 ~ii~~~~VvIYtk~~CP~C~~ak~~L~~-------~gI~y~~idVd~~~ 52 (228)
.+....=.++|..+|||-|......|.. +||..-++|+...+
T Consensus 36 ~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np 84 (248)
T KOG0913|consen 36 ELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP 84 (248)
T ss_pred hhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc
Confidence 3344445677889999999999888875 35666778887764
No 341
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=22.86 E-value=58 Score=24.94 Aligned_cols=16 Identities=25% Similarity=0.777 Sum_probs=14.2
Q ss_pred CEEEEEcCCChhHHHH
Q psy1894 17 KILIFSKSYCPYCKMA 32 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~a 32 (228)
+|.||.-+-||+|.+.
T Consensus 2 ~v~vyyESlCPd~~~f 17 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRF 17 (108)
T ss_pred EEEEEEEecCHhHHHH
Confidence 6899999999999873
No 342
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=22.28 E-value=1.6e+02 Score=22.53 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=32.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCC
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDD 53 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d 53 (228)
+|.+++-++|+=..-++.+.+.++.++..+.+..+.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~ 37 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTT 37 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTST
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccc
Confidence 4899999999999999999999999999999887643
No 343
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=21.99 E-value=4.2e+02 Score=23.77 Aligned_cols=77 Identities=8% Similarity=-0.035 Sum_probs=40.7
Q ss_pred hhHHHHHHHHhcCC-CEEEEEcCCChhHHHHHHHHHHcCCCC---EEEEccCC-CCchHHHHHHHHHhCCCCCCccccCC
Q psy1894 3 PASKQFVQDLIASE-KILIFSKSYCPYCKMAKDVFQKLKVTP---KTVELDHR-DDGDSIQDVLLEITGARSQPSDNDLE 77 (228)
Q Consensus 3 ~~~~~~l~~ii~~~-~VvIYtk~~CP~C~~ak~~L~~~gI~y---~~idVd~~-~d~~e~~eeL~~~sg~~tVP~VfI~G 77 (228)
+.+.+++..+.... +|.+.|.............|..+|+++ +.+-+..+ +..+..+..+.+ + ..+ .++||+
T Consensus 121 pGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~--~-y~I-vl~vGD 196 (266)
T TIGR01533 121 AGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDKSSKESRRQKVQK--D-YEI-VLLFGD 196 (266)
T ss_pred ccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCCCCcHHHHHHHHh--c-CCE-EEEECC
Confidence 34567777776654 344334333233345678899999975 33434332 223344444544 2 222 567777
Q ss_pred Ccccchh
Q psy1894 78 EKPKAEK 84 (228)
Q Consensus 78 e~IGG~d 84 (228)
. ++++.
T Consensus 197 ~-~~Df~ 202 (266)
T TIGR01533 197 N-LLDFD 202 (266)
T ss_pred C-HHHhh
Confidence 6 44443
No 344
>COG5642 Uncharacterized conserved protein [Function unknown]
Probab=21.87 E-value=71 Score=26.32 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=22.4
Q ss_pred CCCCCCCCceeeeHHHHHHHHHHHhCCHHH
Q psy1894 139 SPYENEPPISVYWRKDVEAKAIQVWGSKER 168 (228)
Q Consensus 139 nP~~~~~~m~lyl~~~ve~~a~~~wgs~e~ 168 (228)
||.+...-|.+-.-..|-..|..+|||+|.
T Consensus 77 ~~ls~ees~R~arfarV~~~AvDvfgse~e 106 (149)
T COG5642 77 RRLSPEESERIARFARVWDLAVDVFGSEEE 106 (149)
T ss_pred CCCChhhhHHHHHHHHHHHHHHHHhcCHHH
Confidence 344444456677778899999999999983
No 345
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=21.78 E-value=2.6e+02 Score=23.96 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHhcC-CCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhCCCCCCccccCCCc
Q psy1894 2 NPASKQFVQDLIAS-EKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQPSDNDLEEK 79 (228)
Q Consensus 2 ~~~~~~~l~~ii~~-~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg~~tVP~VfI~Ge~ 79 (228)
+|++++++.++-.. .+++|.+.. -=.++..+...+||+|-..---.. +..++.+|.+. +...=-++.||++.
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn---~e~RV~~~~~~l~v~fi~~A~KP~--~~~fr~Al~~m-~l~~~~vvmVGDqL 120 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNN---KESRVARAAEKLGVPFIYRAKKPF--GRAFRRALKEM-NLPPEEVVMVGDQL 120 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCC---CHHHHHhhhhhcCCceeecccCcc--HHHHHHHHHHc-CCChhHEEEEcchh
Confidence 57888999888777 466666653 234888889999998866554443 36677777764 32222344666663
No 346
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=21.48 E-value=1.1e+02 Score=25.73 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=22.6
Q ss_pred CEEEEEcCCChhHHHHHHHHH----HcCCCCEEEEc
Q psy1894 17 KILIFSKSYCPYCKMAKDVFQ----KLKVTPKTVEL 48 (228)
Q Consensus 17 ~VvIYtk~~CP~C~~ak~~L~----~~gI~y~~idV 48 (228)
+|.+|+-..||||--++..|. ..+++.+.+.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 578999999999987766664 44555544443
No 347
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=21.28 E-value=2.4e+02 Score=19.84 Aligned_cols=35 Identities=9% Similarity=0.165 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCEEEEEcCCChhHHHHHHHHHHcCCC
Q psy1894 7 QFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVT 42 (228)
Q Consensus 7 ~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~gI~ 42 (228)
+.+..+-...+|++|.. .+..+..+...|...|..
T Consensus 48 ~~~~~~~~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 48 DWLGDLDRDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred HHHhhcCCCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 34444446678888886 777788888888998875
No 348
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=21.27 E-value=2.4e+02 Score=25.96 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=59.8
Q ss_pred hHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHHcCCCCEEEEcc----------CCCC-chHHHHHHHHHhCCCCCCc
Q psy1894 4 ASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELD----------HRDD-GDSIQDVLLEITGARSQPS 72 (228)
Q Consensus 4 ~~~~~l~~ii~~~~VvIYtk~~CP~C~~ak~~L~~~gI~y~~idVd----------~~~d-~~e~~eeL~~~sg~~tVP~ 72 (228)
.+.+.++.++...=+-||+-.++..|..+..+.++++||+-....+ ..|+ ..++.+ +.+.+|+.++=.
T Consensus 51 ~~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~-~i~~~~wk~vai 129 (371)
T cd06388 51 AVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLS-LLDHYEWNRFVF 129 (371)
T ss_pred HHHHHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHH-HHHhcCceEEEE
Confidence 3578899999999999999999999999999999999997542221 1111 122222 344568888888
Q ss_pred cccCCCcccchhhhhc
Q psy1894 73 DNDLEEKPKAEKKILE 88 (228)
Q Consensus 73 VfI~Ge~IGG~d~L~~ 88 (228)
|+..+.-++..+.|.+
T Consensus 130 iYd~~~~~~~lq~l~~ 145 (371)
T cd06388 130 LYDTDRGYSILQAIME 145 (371)
T ss_pred EecCCccHHHHHHHHH
Confidence 8875665666666644
No 349
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.14 E-value=1.1e+02 Score=22.50 Aligned_cols=26 Identities=0% Similarity=-0.000 Sum_probs=21.4
Q ss_pred CChhHHHHHHHHHHcCCCCEEEEccC
Q psy1894 25 YCPYCKMAKDVFQKLKVTPKTVELDH 50 (228)
Q Consensus 25 ~CP~C~~ak~~L~~~gI~y~~idVd~ 50 (228)
.=+||.++-.+|+++|++|+.+.-+.
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PSGI 39 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPSGI 39 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecCCC
Confidence 35799999999999999998865433
No 350
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=21.00 E-value=2.5e+02 Score=26.28 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=32.6
Q ss_pred HHHHHHhcC---CCEEEEEcCCChhHH----HHHHHHHHcCCCCEEEEccCCC
Q psy1894 7 QFVQDLIAS---EKILIFSKSYCPYCK----MAKDVFQKLKVTPKTVELDHRD 52 (228)
Q Consensus 7 ~~l~~ii~~---~~VvIYtk~~CP~C~----~ak~~L~~~gI~y~~idVd~~~ 52 (228)
+.|.+++++ .-|+.++..+|.... .++..|++.|||+-.++.|..+
T Consensus 303 ~~i~~lv~~~~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D~~~ 355 (377)
T TIGR03190 303 DHVLGLAKEYNVQGAIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFDITN 355 (377)
T ss_pred HHHHHHHHHhCCCEEEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecCCCC
Confidence 444544444 357888888887653 4678888889999888888764
No 351
>PRK10670 hypothetical protein; Provisional
Probab=20.64 E-value=1.7e+02 Score=23.93 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCCCEEEEccCCCCchHHHHHHHHHhC---CCCCCcccc
Q psy1894 31 MAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITG---ARSQPSDND 75 (228)
Q Consensus 31 ~ak~~L~~~gI~y~~idVd~~~d~~e~~eeL~~~sg---~~tVP~VfI 75 (228)
.|.++|++.+|+|+.++++.++......++..+..| ...+-++++
T Consensus 3 ~~~~~L~~~~i~y~~~~~~h~~~~~~~~~~~a~~lgv~~~~i~Ktlv~ 50 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYEHDPAETNFGDEVVRKLGLNADQVYKTLLV 50 (159)
T ss_pred HHHHHHHHCCCCeEEEeeccCCcccchHHHHHHHhCCCHHHeEEEEEE
Confidence 477899999999999777665322111133444334 234566655
No 352
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=20.18 E-value=1.2e+02 Score=26.98 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=25.1
Q ss_pred CCceeeeHHHHHHHHHHHh------C-C--HHHHHHHHHHhHH
Q psy1894 145 PPISVYWRKDVEAKAIQVW------G-S--KERLLQERLKNEL 178 (228)
Q Consensus 145 ~~m~lyl~~~ve~~a~~~w------g-s--~e~l~~e~~~r~~ 178 (228)
.+.|+||-.-+|.||-++| | + .|.|.+|..+|..
T Consensus 138 A~lKiFLtAS~e~RA~RR~~q~~~~g~~~~~e~ll~eI~~RD~ 180 (222)
T COG0283 138 AELKIFLTASPEERAERRYKQLQAKGFSEVFEELLAEIKERDE 180 (222)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhh
Confidence 5689999999999999888 4 3 3666666555443
No 353
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=20.03 E-value=1.8e+02 Score=24.28 Aligned_cols=19 Identities=11% Similarity=0.319 Sum_probs=14.9
Q ss_pred CCceeeeHHHHHHHHHHHh
Q psy1894 145 PPISVYWRKDVEAKAIQVW 163 (228)
Q Consensus 145 ~~m~lyl~~~ve~~a~~~w 163 (228)
.+.|+||-..++.||.++|
T Consensus 80 A~~KifLtAs~e~RA~RR~ 98 (157)
T PF02224_consen 80 ADLKIFLTASPEVRARRRY 98 (157)
T ss_dssp -SEEEEEE--HHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHH
Confidence 4689999999999999888
Done!