RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1894
(228 letters)
>2enk_A HUEL, solute carrier family 30 member 9; cation transporter,
cobalt, zinc, cadmium, protein of unknown function
DUF993, embryonic LUNG protein; NMR {Homo sapiens}
Length = 101
Score = 103 bits (258), Expect = 8e-29
Identities = 42/95 (44%), Positives = 63/95 (66%)
Query: 104 SVSSTERNFITPNRAMSDFLLKQSDLEGLKVIKRRSPYENEPPISVYWRKDVEAKAIQVW 163
S T+ NFIT RA+++F LK SDLE L+ I+RRSP+E+ +VY R DVEAK+++VW
Sbjct: 6 SGKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEVW 65
Query: 164 GSKERLLQERLKNELERKYQQQHIFTMKRKLRDYR 198
GS E L +E+ + ++ +F ++ LR+YR
Sbjct: 66 GSPEALAREKKLRKEAEIEYRERLFRNQKILREYR 100
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics,
structural genomics CON SGC, developmental protein,
differentiation; 2.21A {Homo sapiens}
Length = 114
Score = 98.8 bits (247), Expect = 6e-27
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDV 60
++ + LI +++IFSKSYCP+ K++F L V +ELD DDG +Q+V
Sbjct: 2 AREELRRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEV 61
Query: 61 LLEITGARSQP 71
L EIT ++ P
Sbjct: 62 LSEITNQKTVP 72
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 99.0 bits (247), Expect = 8e-27
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDV 60
+ A +Q+ I+ ++IFSK+ C YC MAK +F + V K VELD + G+ QD
Sbjct: 12 LATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDA 71
Query: 61 LLEITGARSQP 71
L ++TG R+ P
Sbjct: 72 LYKMTGERTVP 82
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB:
2fls_A*
Length = 146
Score = 98.7 bits (246), Expect = 2e-26
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDV 60
+ A +Q+ I+ ++IFSK+ C YC MAK +F + V K VELD + G+ QD
Sbjct: 34 LATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDA 93
Query: 61 LLEITGARSQP 71
L ++TG R+ P
Sbjct: 94 LYKMTGERTVP 104
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite.,
electron trans oxidoreductase; 1.80A {Ectromelia virus}
PDB: 2hzf_A 2hze_B
Length = 114
Score = 93.1 bits (232), Expect = 1e-24
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 2 NPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTP---KTVELDHRDDGDSIQ 58
+ +++FVQ +A+ K+ IF K CP+C+ A D+ K + V++ + ++
Sbjct: 5 HQMAEEFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELR 64
Query: 59 DVLLEITGARSQP 71
D +ITG ++ P
Sbjct: 65 DYFEQITGGKTVP 77
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm,
electron transport, redox-active center, transport;
HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A*
2jac_A*
Length = 118
Score = 93.2 bits (232), Expect = 1e-24
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDV-FQKLKVTPKTV---ELDHRDDGDS 56
++ + + V+DLIA +I + SK+YCPYC A + F+KLKV V +L+ +G
Sbjct: 10 VSQETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGAD 69
Query: 57 IQDVLLEITGARSQP 71
IQ L EI G R+ P
Sbjct: 70 IQAALYEINGQRTVP 84
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold,
thiol-disulfide oxidoreductase, glutaredox
oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana}
PDB: 3rhc_A* 3fz9_A* 3fza_A*
Length = 113
Score = 92.3 bits (230), Expect = 2e-24
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGDSIQD 59
++ ++ + ++I+SK++C YC K +F++L V P VELD G +Q
Sbjct: 4 FGSRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQK 63
Query: 60 VLLEITGARSQP 71
VL +TG + P
Sbjct: 64 VLERLTGQHTVP 75
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 92.7 bits (231), Expect = 2e-24
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDV 60
++ A + ++L +S +++FSK+YC YC K + ++ + K VELD DG +Q
Sbjct: 6 LDAA-LKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSA 64
Query: 61 LLEITGARSQP 71
L TG + P
Sbjct: 65 LAHWTGRGTVP 75
>1kte_A Thioltransferase; redox-active center, electron transport,
acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB:
1jhb_A 1b4q_A*
Length = 105
Score = 91.5 bits (228), Expect = 4e-24
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 5 SKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKT---VELDHRDDGDSIQDVL 61
++ FV I K+++F K CP+C+ +++ +L V++ D + IQD L
Sbjct: 1 AQAFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYL 60
Query: 62 LEITGARSQP 71
++TGAR+ P
Sbjct: 61 QQLTGARTVP 70
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion,
redox-activ transit peptide, transport, oxidoreductase;
1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A
3d5j_A*
Length = 129
Score = 90.9 bits (226), Expect = 1e-23
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDV-FQKLKVT---PKTVELDHRDDGDS 56
++ + V+DLI +++ + +K+YCPYCK FQ+L V +ELD +G
Sbjct: 22 VSQETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSE 81
Query: 57 IQDVLLEITGARSQP 71
IQD L EI+G ++ P
Sbjct: 82 IQDALEEISGQKTVP 96
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6,
oxidoreductase; HET: GSH; 1.50A {Saccharomyces
cerevisiae}
Length = 127
Score = 83.6 bits (207), Expect = 7e-21
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 6 KQFVQDLIASEKILIFSKSYCPYCKMAKDVFQK---LKVTPKTVELDHRDDGDSIQDVLL 62
++ ++ I+IFSKS C Y K K++ + +ELD G+ +Q+ +
Sbjct: 4 QKEYSLILDLSPIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIK 63
Query: 63 EITGARSQP 71
+TG + P
Sbjct: 64 LVTGRGTVP 72
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 81.2 bits (201), Expect = 6e-18
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MNPAS--KQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQ 58
M PA Q+++ + S +++FSK+ CPYCK KDV + K+ T+ELD +G +IQ
Sbjct: 1 MPPADGTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQ 60
Query: 59 DVLLEITGARSQPS 72
L + + P
Sbjct: 61 KCLASFSKIETVPQ 74
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair,
loop-rich domain, relaxation, DNA binding protein; NMR
{Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Length = 111
Score = 68.1 bits (166), Expect = 4e-15
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 111 NFITPNRAMSDFLLKQSDLE----GLKVIKRRSPYE-NEPPISVYWRKDVEAKAIQVWGS 165
IT A ++LLK DLE LK I +++P+ + +Y + + ++++VWGS
Sbjct: 40 KLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGS 99
Query: 166 KERLLQERLKNE 177
+E L + + +
Sbjct: 100 QEALEEAKEVRQ 111
>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron
transport, redox- active center, yeast, GRX1P,
transport; HET: PIA; 2.7A {Aequorea victoria}
Length = 362
Score = 69.4 bits (169), Expect = 4e-14
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDV-FQKLKVTPKT---VELDHRDDGDS 56
++ + + V+DLIA +I + SK+YCPY A + F+KLKV ++L+ +G
Sbjct: 246 VSQETIKHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGAD 305
Query: 57 IQDVLLEITGARSQP 71
IQ L EI G R+ P
Sbjct: 306 IQAALYEINGQRTVP 320
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A
{Synechocystis SP}
Length = 99
Score = 63.0 bits (154), Expect = 2e-13
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDV 60
M + S KI I++ S CP+C A + ++ V + +D D ++ + +
Sbjct: 1 MRGSHHHHHHGSAVSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDG--DNEAREAM 58
Query: 61 LLEITGARSQP 71
G RS P
Sbjct: 59 AARANGKRSLP 69
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Brucella melitensis}
Length = 92
Score = 59.1 bits (144), Expect = 5e-12
Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQP 71
++I+++ CPYC AK + + ++ ++ + E +G + P
Sbjct: 7 DVIIYTRPGCPYCARAKALLARKGAEFNEIDA---SATPELRAEMQERSGRNTFP 58
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Bartonella henselae}
Length = 89
Score = 56.4 bits (137), Expect = 5e-11
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQP 71
+I+++++ CPYCK A+D+ K V ++ Q+++ G + P
Sbjct: 7 EIILYTRPNCPYCKRARDLLDKKGVKYTDIDA----STSLRQEMVQRANGRNTFP 57
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron
transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB:
3grx_A*
Length = 82
Score = 55.6 bits (135), Expect = 9e-11
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQP 71
+ I++K CPYC AK + V+ + + + D + ++ +++ +G + P
Sbjct: 2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPI---DGNAAKREEMIKRSGRTTVP 53
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 52.4 bits (126), Expect = 2e-09
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELD--HRDDGDSIQDVLLEITGARSQP 71
K++++ S C +CK K + L V V +D + + + + + S P
Sbjct: 23 KVIMYGLSTCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFP 79
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP:
c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Length = 85
Score = 51.1 bits (123), Expect = 4e-09
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTV---ELDHRDDGDSIQDVLLEITG 66
+ +IF +S CPYC AKD+ +KL +D R +G + +D L + G
Sbjct: 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKED-LQQKAG 53
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 5e-08
Identities = 49/275 (17%), Positives = 98/275 (35%), Gaps = 74/275 (26%)
Query: 4 ASKQFVQDLI-----ASEKILIFSKSYCPYCKM-----AKDVFQKLKV-TPKTVELDHRD 52
SK + L+ + K ++ CK+ K V L T + LDH
Sbjct: 239 KSKPYENCLLVLLNVQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 53 DG---DSIQDVLLEITGARSQPSDNDLEEKPKAEKKILEIPVEAVAKPRIRVDLSVSSTE 109
D ++ +LL+ R Q DL P+ + +A+ IR L+ T
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQ----DL---PREVLTTNPRRLSIIAE-SIRDGLA---TW 344
Query: 110 RNFITPNR-AMSDFLLKQSDLEGLKVIKRRSPYE---------NEPP--ISVYWRKDVEA 157
N+ N ++ + +S L L+ + R ++ + P +S+ W +++
Sbjct: 345 DNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 158 KAIQVWGS--KERLLQERLKNE--------LERKYQQQHIFTMKRKLRD-YRREQGS--- 203
+ V K L++++ K LE K + ++ + + R + D Y +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 204 ------------------LADQKMAEKAGLFGLLY 220
L + + E+ LF +++
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Score = 29.8 bits (66), Expect = 0.86
Identities = 32/233 (13%), Positives = 70/233 (30%), Gaps = 56/233 (24%)
Query: 33 KDVFQKLKVTPKTVELDH-RDDGDSIQDVLLEITGARSQPS-----------DND---LE 77
KDV K E+DH D++ L S+ + L
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 78 EKPKAEKKILEIPVEAVAKPRIRVDLSVSSTERNFIT---PNRAMSDFLLKQSD-----L 129
K E++ + + R R+ + ++ P + LL+ +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 130 EGLK-------VIK--RRSPYENEPPISVYWRKDVEAKAIQV--WGSKERLL--QERLKN 176
+G+ + + + ++W + + S E +L ++L
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFW--------LNLKNCNSPETVLEMLQKLLY 207
Query: 177 ELERKYQQQ--HIFTMKRKLRDYRREQGSLADQKMAEKAGLFGLLYPISMLRL 227
+++ + + H +K ++ + E L K Y +L L
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----------YENCLLVL 250
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein
structure initiative, midwest center for structural
genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Length = 92
Score = 46.5 bits (111), Expect = 3e-07
Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDS--IQDVLLEITGARSQP 71
++L++ S CP+CK + ++ V + + +D + + + + + I+G+ S P
Sbjct: 13 EVLMYGLSTCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVP 69
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural
genomics of infec diseases, csgid, oxidoreductase; HET:
GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Length = 89
Score = 44.2 bits (105), Expect = 1e-06
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQD----VLLEITGARSQP 71
K+ I++++ CPYC AK F++ + +D D I + P
Sbjct: 5 KVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVP 63
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 37.7 bits (88), Expect = 3e-04
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQP 71
+I I++++ C C K + + + +D ++ + + G R P
Sbjct: 2 RITIYTRNDCVQCHATKRAMENRGFDFEMINVD--RVPEAAEAL--RAQGFRQLP 52
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 35.3 bits (82), Expect = 0.001
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKV 41
I +++K C C K + +
Sbjct: 2 SITLYTKPACVQCTATKKALDRAGL 26
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 33.1 bits (75), Expect = 0.037
Identities = 14/98 (14%), Positives = 36/98 (36%), Gaps = 3/98 (3%)
Query: 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELD--HRDDGDSIQ 58
+ A + +Q + ++L+ + +CP C++ + +EL + +
Sbjct: 41 LPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDL 100
Query: 59 DVLLEITGARSQPSDNDLEEKPKAEKKILEIPVEAVAK 96
L + + P L+E+ + +E P +
Sbjct: 101 RQRLAL-ERIAIPLVLVLDEEFNLLGRFVERPQAVLDG 137
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.046
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 147 ISVYWRKDVEAKAIQVWGSKERLLQERL--KNELERKYQQQHIFTMKRKLRD-YRREQGS 203
I+ R E ++I+ W +E ++RL + + +Q+ K+ L + +R+
Sbjct: 74 IAQADRLTQEPESIRKW--REE-QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Query: 204 L----ADQKMAEKA 213
+ + ++A+KA
Sbjct: 131 VEKNKINNRIADKA 144
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1
c.47.1.10
Length = 241
Score = 32.3 bits (74), Expect = 0.076
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 6 KQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEIT 65
K E I IF+K CP+C AK + ++ + + L H D+ + ++
Sbjct: 160 KYLAPQHQVQESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGH----DATIVSVRAVS 215
Query: 66 GARSQP 71
G + P
Sbjct: 216 GRTTVP 221
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria
phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Length = 87
Score = 30.9 bits (70), Expect = 0.078
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 2/50 (4%)
Query: 22 SKSYCPYCKMAKDVFQKLKV--TPKTVELDHRDDGDSIQDVLLEITGARS 69
+ C C AK + K + + D LL G +
Sbjct: 10 NIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDT 59
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 30.8 bits (69), Expect = 0.13
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 10 QDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVE 47
D A ++L+F + C YC + P T E
Sbjct: 14 DDDKAELRLLMFEQPGCLYCARWDA--EIAPQYPLTDE 49
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 30.5 bits (68), Expect = 0.13
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 2 NPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVL 61
+P + L ++ +CP+C+ K++F VE + + Q
Sbjct: 1 SPLAVGLAAHL-RQIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECS-PNGPGTPQAQE 58
Query: 62 LEITGARSQPS 72
G S P+
Sbjct: 59 CTEAGITSYPT 69
>1zma_A Bacterocin transport accessory protein;
alpha-beta-alpha-sandwich, structural genomics, PSI,
protein structure initiative; HET: MSE; 1.25A
{Streptococcus pneumoniae} SCOP: c.47.1.1
Length = 118
Score = 30.7 bits (69), Expect = 0.16
Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 1 MNPASKQFVQDLIASEK--ILIFSKSYCPYCKMA----KDVFQKLKVTPKTVELDHRDDG 54
+ + Q+ + ++ + CPYC+ V + K + +
Sbjct: 14 LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQL 73
Query: 55 DSIQDVL 61
+ +Q
Sbjct: 74 NDLQAFR 80
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Length = 100
Score = 30.1 bits (68), Expect = 0.18
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGD 55
+ +F+K+ CP C AK+V Q K E+D +
Sbjct: 18 VLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPEN 56
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR
{Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Length = 70
Score = 28.8 bits (65), Expect = 0.28
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 26 CPYCKMAKDVFQKLKVTP 43
CP C+ K+ F+ +K
Sbjct: 43 CPACRSPKNQFKSIKKVI 60
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain
700825 / FA 1090), DSBC, structural genomics, unknown
funct 2; 2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 29.6 bits (66), Expect = 0.53
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 14 ASEKILIFSKSYCPYCKMAKDVFQKLK 40
K+ +FS CP+CK + F+K+
Sbjct: 14 GKLKVAVFSDPDCPFCKRLEHEFEKMT 40
>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A
{Vaccinia virus}
Length = 124
Score = 28.9 bits (64), Expect = 0.57
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 16 EKILIFSKSYCPYCKMAKDVFQKLK 40
++IF K YC C+ D ++LK
Sbjct: 3 NVLIIFGKPYCSICENVSDAVEELK 27
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase;
NMR {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Length = 85
Score = 28.0 bits (63), Expect = 0.67
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLK 40
I +F+ CPYC MA +V + K
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAK 27
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de
novo NAD biosynthesis, PRPP, phosphoribos transferase;
2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1
d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Length = 284
Score = 29.4 bits (67), Expect = 0.79
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 32 AKDVFQKLKVTPKTVELDHRDDGDSIQ--DVLLEITG-ARS 69
A ++ T LD +DG + + L+ + R
Sbjct: 58 ALLTLNEVLGTNGYRVLDRVEDGARVPPGEALMTLEAQTRG 98
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo
sapiens} PDB: 1xbs_A
Length = 149
Score = 28.4 bits (63), Expect = 1.1
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 5 SKQFVQDLIASEK----ILIFSKSYCPYCKMAKDVFQKL 39
SK+ V I S +L F + P C D+ K
Sbjct: 10 SKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKT 48
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur
protein, oxidoreductase, ELE transfer, electron
transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas
aeruginosa}
Length = 55
Score = 26.8 bits (60), Expect = 1.2
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 26 CPYCKMAKDVFQKLKV 41
CP C + K F+ +++
Sbjct: 39 CPDCGVGKIDFEMIEI 54
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 1.7
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 11/35 (31%)
Query: 23 KSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSI 57
CP CK PK VE +GD +
Sbjct: 21 VLTCPECK---------VYPPKIVE-RF-SEGDVV 44
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 27.7 bits (61), Expect = 1.9
Identities = 5/25 (20%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 18 ILIFSKSYCPYCK-MAKDVFQKLKV 41
++I C Y + + K Q ++
Sbjct: 48 MVIHHLEDCQYSQALKKVFAQNEEI 72
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 27.3 bits (61), Expect = 2.1
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 5 SKQFVQDLIASEKILI--FSKSYCPYCKMAKDVFQKL 39
+ ++LI L+ F ++C CKM + KL
Sbjct: 19 NLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKL 55
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle
structural genomics center for infectious electron
transport, iron; NMR {Mycobacterium tuberculosis}
Length = 81
Score = 26.6 bits (59), Expect = 2.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 26 CPYCKMAKDVFQKLKVT 42
CP C AK F+ ++V
Sbjct: 63 CPDCGAAKSDFEMVEVA 79
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 2.6
Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 45/122 (36%)
Query: 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDV 60
+ PAS +DL+ + + F+ AKD +++ P V DG ++ +
Sbjct: 432 LVPASDLINKDLVKNN--VSFN---------AKD----IQI-P--VY--DTFDGSDLRVL 471
Query: 61 LLEITGARSQPSDNDLEEKPKAEKKILEIPV--EAVAKPRIR--VDL---SVSS----TE 109
I+ D I+ +PV E + + +D S T
Sbjct: 472 SGSIS-----ERIVDC---------IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH 517
Query: 110 RN 111
RN
Sbjct: 518 RN 519
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 26.9 bits (60), Expect = 3.5
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 18 ILIFSKSYCPYCK-MAKDVFQKLKV 41
++ F +CPYC+ M V V
Sbjct: 23 MVYFHSEHCPYCQQMNTFVLSDPGV 47
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown
function, STRU genomics, PSI, MCSG, protein structure
initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Length = 208
Score = 27.3 bits (60), Expect = 3.6
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVT-PKTVELDHR 51
K+ C +C K +KLK P ++ ++
Sbjct: 4 KLYYVHDPMCSWCWGYKPTIEKLKQQLPGVIQFEYV 39
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox
protein, protein folding, redox active centre; 1.81A
{Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Length = 186
Score = 27.0 bits (60), Expect = 3.7
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 17 KILIFSKSY-CPYCK-MAKDVFQKLK---VTPKTVELDHRD 52
++++ Y CPYCK + + V KL+ + VE +
Sbjct: 14 LVVVYG-DYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVN 53
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain,
FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus
norvegicus} SCOP: b.43.4.1 c.25.1.4
Length = 435
Score = 27.3 bits (61), Expect = 4.0
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 3 PASKQFVQDLI---ASEKI--LIFSKSYCPY----CKMAKDVFQKLK 40
K++VQD++ +E + + + Y MA DV + ++
Sbjct: 355 DRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQ 401
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 27.5 bits (61), Expect = 4.1
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 3 PASKQFVQDLI---ASEKI--LIFSKSYCPY----CKMAKDVFQKLK 40
K++VQD++ +E + + + Y MA DV + ++
Sbjct: 576 DRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQ 622
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein,
redox-active center; HET: MES; 1.90A {Escherichia coli}
SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
2iyj_A
Length = 216
Score = 26.8 bits (58), Expect = 5.0
Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 4/81 (4%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDG----DSIQDVLLEITGARSQPS 72
I +F+ C YC + TV D+ +++ +
Sbjct: 89 VITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKA 148
Query: 73 DNDLEEKPKAEKKILEIPVEA 93
+D+ ++ +
Sbjct: 149 FDDVMAGKSVAPASCDVDIAD 169
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 27.2 bits (61), Expect = 5.1
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 12/109 (11%)
Query: 29 CKMAKDVFQKLKVTPKTVELD--HRDDGDSIQDVLLEITGARSQPSDNDLEEKPKAEKKI 86
A + L ++ K V + R + ++E G S K EK
Sbjct: 166 VCAACWAMRSLGLSSKDVGIKVNSRK----VLQTVVEQAGVTSDKFAPVCVIVDKMEK-- 219
Query: 87 LEIPVEAVAKPRIRVDLSVSSTERNFITPNRAMSDFLLKQS--DLEGLK 133
IP E V + L + + T + D + ++ + E +K
Sbjct: 220 --IPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGEEHEAVK 266
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 26.6 bits (58), Expect = 5.4
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 18 ILIFSKSYCPYCK-MAKDVFQ 37
++I KS+C CK + +
Sbjct: 50 MVIIHKSWCGACKALKPKFAE 70
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like,
structural genomics, PSI, protein structure initiative;
NMR {Nitrosomonas europaea}
Length = 107
Score = 25.5 bits (56), Expect = 7.9
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRD-DGD 55
K++++ + C C+ + L+ EL+ + DG+
Sbjct: 31 KLVVYGREGCHLCEEMIASLRVLQ-KKSWFELEVINIDGN 69
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like,
oxidoreductase, competence, redox-active center; 1.40A
{Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Length = 202
Score = 26.2 bits (58), Expect = 8.2
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 17 KILIFSKSY-CPYCK-MAKDVFQKLK 40
++ F Y CP CK D+F K++
Sbjct: 32 TVVEFG-DYKCPSCKVFNSDIFPKIQ 56
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula}
SCOP: c.47.1.1
Length = 113
Score = 25.4 bits (56), Expect = 8.3
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 4 ASKQFVQDLIASEKILI--FSKSYCPYCKMAKDVFQKL 39
K+ + S+K+++ F+ S+CP CKM +F +L
Sbjct: 14 TWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAEL 51
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 9.5
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 13/42 (30%)
Query: 6 KQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVE 47
KQ ++ L AS K+ Y D L + T+E
Sbjct: 19 KQALKKLQASLKL------YAD------DSAPALAIK-ATME 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.373
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,388,874
Number of extensions: 203477
Number of successful extensions: 652
Number of sequences better than 10.0: 1
Number of HSP's gapped: 637
Number of HSP's successfully gapped: 78
Length of query: 228
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 138
Effective length of database: 4,188,903
Effective search space: 578068614
Effective search space used: 578068614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)