RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1894
(228 letters)
>d1d4ua1 a.6.1.2 (A:37-111) DNA repair factor XPA DNA- and
RPA-binding domain, C-terminal subdomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 75
Score = 71.3 bits (175), Expect = 4e-17
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 111 NFITPNRAMSDFLLKQSDLEG----LKVIKRRSPYE-NEPPISVYWRKDVEAKAIQVWGS 165
IT A ++LLK DLE LK I +++P+ + +Y + + ++++VWGS
Sbjct: 4 KLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGS 63
Query: 166 KERLLQERLKNE 177
+E L + + +
Sbjct: 64 QEALEEAKEVRQ 75
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 105
Score = 57.0 bits (137), Expect = 2e-11
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 5 SKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGD 55
++ FV I K+++F K CP+C+ +++ +L +E
Sbjct: 1 AQAFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATS 51
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli [TaxId: 562]}
Length = 85
Score = 49.6 bits (118), Expect = 5e-09
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTV---ELDHRDDGDSIQDVLLEITGARSQPS 72
+ +IF +S CPYC AKD+ +KL +D R +G + +D+ +
Sbjct: 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVP 60
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of
Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Length = 74
Score = 49.2 bits (117), Expect = 6e-09
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 16 EKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQP 71
E I IF+K CP+C AK + ++ + + L H D+ + ++G + P
Sbjct: 5 ESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGH----DATIVSVRAVSGRTTVP 56
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli, Grx3 [TaxId: 562]}
Length = 82
Score = 43.4 bits (102), Expect = 1e-06
Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDVLLEITGARSQP 71
+ I++K CPYC AK + V+ + + D + ++ +++ +G + P
Sbjct: 2 NVEIYTKETCPYCHRAKALLSSKGVSFQEL---PIDGNAAKREEMIKRSGRTTVP 53
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 74
Score = 42.7 bits (100), Expect = 1e-06
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGD 55
I +++K C C K + + TV++ D+
Sbjct: 2 SITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDEAR 40
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 109
Score = 41.1 bits (96), Expect = 9e-06
Identities = 7/52 (13%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 4 ASKQFVQDLIASEKILIFSK-----SYCPYCKMAKDVFQKLKVTPKTVELDH 50
+ ++ L +++F K + C + K ++ V +T ++
Sbjct: 3 SGSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE 54
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia
coli [TaxId: 562]}
Length = 76
Score = 39.3 bits (91), Expect = 2e-05
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGD 55
+I I++++ C C K + + + +D +
Sbjct: 2 RITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAA 40
>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Bacteriophage T4 [TaxId: 10665]}
Length = 87
Score = 36.2 bits (83), Expect = 3e-04
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 22 SKSYCPYCKMAKDVFQKLKVTPKTV---ELDHRDDGDSIQDVLLEI----TGARSQP 71
+ C C AK + K + + D + I ++L ++ + P
Sbjct: 10 NIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMP 66
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing
protein C330018D20Rik {Mouse (Mus musculus) [TaxId:
10090]}
Length = 100
Score = 30.5 bits (68), Expect = 0.049
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 10 QDLIASEK----ILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGD 55
+L AS + + +F+K+ CP C AK+V Q K E+D +
Sbjct: 7 GNLSASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPEN 56
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 28.3 bits (62), Expect = 0.32
Identities = 5/39 (12%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 1 MNPASKQFVQDLIASEK--ILIFSKSYCPYCKMAKDVFQ 37
+ + Q+ + ++ + CPYC+
Sbjct: 11 LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLS 49
>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas
campestris [TaxId: 339]}
Length = 75
Score = 27.1 bits (60), Expect = 0.54
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 18 ILIFSKSYCPYCKMAKDVF-QKLKVTPKTVELDHRDD 53
+ ++ + C C A + Q +V +D
Sbjct: 2 LTLYQRDDCHLCDQAVEALAQARAGAFFSVFIDDDAA 38
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like
protein {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 85
Score = 27.0 bits (59), Expect = 0.71
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 17 KILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHRDDGDSIQDV 60
I +F+ CPYC MA +V + K + D ++
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREK 47
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId:
55529]}
Length = 70
Score = 26.2 bits (58), Expect = 0.80
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 26 CPYCKMAKDVFQKLKVTP 43
CP C+ K+ F+ +K
Sbjct: 43 CPACRSPKNQFKSIKKVI 60
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 53
Score = 25.0 bits (55), Expect = 1.5
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 26 CPYCKMAKDVFQKLK 40
CP C K F+KL+
Sbjct: 38 CPICGAPKSEFEKLE 52
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum
[TaxId: 1501]}
Length = 53
Score = 24.7 bits (54), Expect = 2.0
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 26 CPYCKMAKDVFQKLK 40
CP C + KD F++++
Sbjct: 39 CPLCGVGKDQFEEVE 53
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId:
879]}
Length = 52
Score = 23.9 bits (52), Expect = 3.7
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 26 CPYCKMAKDVFQK 38
CP C +KD F+K
Sbjct: 39 CPVCGASKDAFEK 51
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 107
Score = 24.9 bits (53), Expect = 5.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 2 NPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQK 38
+KQ ++++ +IL+F CPYC +A + K
Sbjct: 3 MDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHK 39
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 166
Score = 24.9 bits (53), Expect = 6.8
Identities = 6/39 (15%), Positives = 17/39 (43%)
Query: 1 MNPASKQFVQDLIASEKILIFSKSYCPYCKMAKDVFQKL 39
+ A + +Q + ++L+ + +CP C++
Sbjct: 41 LPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFA 79
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator
(DsbA) {Vibrio cholerae [TaxId: 666]}
Length = 181
Score = 25.0 bits (53), Expect = 7.8
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 14 ASEKILIFSKSYCPYCKMAKDVFQKLKVTPKTVELDHR 51
+S + F YCP+C + + +LK +
Sbjct: 18 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQK 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.373
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 816,382
Number of extensions: 37980
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 29
Length of query: 228
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,281,736
Effective search space: 187133456
Effective search space used: 187133456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)