BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1895
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve
Domain-Containing Protein 12
Length = 89
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 53/70 (75%)
Query: 71 WAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVK 130
W KD EA CR C+KEF+++RR+HHCRNCG IFCN CS N++ALPS KPVRVCD C+
Sbjct: 20 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTL 79
Query: 131 LVEKLTVVNS 140
L+++ + S
Sbjct: 80 LLQRCSSTAS 89
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing
Protein
Length = 82
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 53/70 (75%)
Query: 71 WAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVK 130
W KD EA CR C+KEF+++RR+HHCRNCG IFCN CS N++ALPS KPVRVCD C+
Sbjct: 13 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTL 72
Query: 131 LVEKLTVVNS 140
L+++ + S
Sbjct: 73 LLQRCSSTAS 82
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 41 ELGAQLSKSKLQVSDLMEEHQIAK----RATEAQWAKDKEAITCRACDKEFTVTRRRHHC 96
EL +L + V +L E+Q + +A +WA+D E C AC K F+VT RRHHC
Sbjct: 29 ELQRKLDNTTAAVQELGRENQSLQIKHTQALNRKWAEDNEVQNCMACGKGFSVTVRRHHC 88
Query: 97 RNCGEIFCNMCSDNKMALPSAAKPVRVCDEC 127
R CG IFC CS PS+ KPVRVCD C
Sbjct: 89 RQCGNIFCAECSAKNALTPSSKKPVRVCDAC 119
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With
Inositol 1,3-Bisphosphate
pdb|1HYJ|A Chain A, Solution Structure Of The Eea1 Fyve Domain
Length = 65
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 38/58 (65%)
Query: 70 QWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDEC 127
+WA+D E C AC K F+VT RRHHCR CG IFC CS PS+ KPVRVCD C
Sbjct: 2 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDAC 59
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve
Domain From Leishmania Major
Length = 84
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 62 IAKRATEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALP--SAAK 119
+ ++ ++ W +D++A C C FT T RRHHCRNCG + C CS ++ A+P +
Sbjct: 6 MGEKQSKGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITE 65
Query: 120 PVRVCDECNVKL 131
P RVCD C + L
Sbjct: 66 PERVCDACYLAL 77
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 28 SDDKYKESELALEELGAQLSKSKLQVSDLMEEHQIAKRATEAQWAKDKEAITCRACDKEF 87
S DKY+ A+++ L +L E + T WA + C C EF
Sbjct: 119 SSDKYQ----AIKDTMTILKAKGHTFPELREADAMFTADTAPNWADGR---VCHRCRVEF 171
Query: 88 TVTRRRHHCRNCGEIFCNMCSDNKMALPSAA--KPVRVCDECNVKL 131
T T R+HHCRNCG++FC C+ + LP K VRVCD C L
Sbjct: 172 TFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAAL 217
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16)
At 1.1a Resolution
Length = 90
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 34/60 (56%)
Query: 68 EAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDEC 127
+ W D EA C C +FT T+RRHHCR CG++FC +C + K L K RVC C
Sbjct: 11 QPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVC 70
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of
Vps27p Protein From Saccharomyces Cerevisiae
Length = 73
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 67 TEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAA--KPVRVC 124
T A W D +A C C K+F++ R+HHCR+CG +FC S N + LP +PVRVC
Sbjct: 4 TPADWI-DSDA--CMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVC 60
Query: 125 DEC 127
D C
Sbjct: 61 DSC 63
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 63 AKRATEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAA--KP 120
A+RA + W +E C C +F V R+HHCR CG+IFC CS +P K
Sbjct: 155 AERAPD--WVDAEE---CHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKE 209
Query: 121 VRVCDECNVKL 131
VRVC+ C +L
Sbjct: 210 VRVCEPCYEQL 220
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 80 CRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAA-KPVRVCDEC 127
C C +F++T RRHHC CG+I C CS NK L + +VCD C
Sbjct: 378 CXNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRXAKVCDGC 426
>pdb|1WFK|A Chain A, Fyve Domain Of Fyve Domain Containing 19 Protein From Mus
Musculus
Length = 88
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 80 CRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKP-VRVCDECNVKLV 132
C C +FT+ ++ + C+NCG FCN C +P A +VC +C+ L
Sbjct: 12 CYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65
>pdb|1X4U|A Chain A, Solution Structure Of The Fyve Domain From Human Fyve
Domain Containing 27 Isoform B Protein
Length = 84
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 80 CRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPS--AAKP------VRVCDECNVKL 131
C C F+V ++R C NCG FC+ C K+ S A P V VC CN L
Sbjct: 17 CTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTL 76
>pdb|4EHX|A Chain A, Crystal Structure Of Lpxk From Aquifex Aeolicus At 1.9
Angstrom Resolution
pdb|4EHY|A Chain A, Crystal Structure Of Lpxk From Aquifex Aeolicus In Complex
With AdpMG2+ AT 2.2 ANGSTROM RESOLUTION
Length = 315
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 4 GGLKRSF----DDHVKMNKIAEHVKDNVSDDKYKESELALEELGAQL 46
G LK S+ D+ M K+ HV S+D+YK LALE+L ++
Sbjct: 88 GNLKVSWEEAGDEPYLMAKLLPHVSVVASEDRYKGGLLALEKLSPEV 134
>pdb|4EHW|A Chain A, Crystal Structure Of Lpxk From Aquifex Aeolicus At 2.3
Angstrom Resolution
Length = 317
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 4 GGLKRSF----DDHVKMNKIAEHVKDNVSDDKYKESELALEELGAQL 46
G LK S+ D+ M K+ HV S+D+YK LALE+L ++
Sbjct: 90 GNLKVSWEEAGDEPYLMAKLLPHVSVVASEDRYKGGLLALEKLSPEV 136
>pdb|1Y02|A Chain A, Crystal Structure Of A Fyve-type Domain From Caspase
Regulator Carp2
Length = 120
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 79 TCRACDKEFTVTRRRHHCRNCGEIFCNMCS 108
+C++C F T R+ C +C + FC CS
Sbjct: 21 SCKSCGAHFANTARKQTCLDCKKNFCMTCS 50
>pdb|1IE7|C Chain C, Phosphate Inhibited Bacillus Pasteurii Urease Crystal
Structure
Length = 570
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 9 SFDDHVKMNKIAEHVKDNVSDD-KYKESELALEELGAQLSKSKLQVSDLMEEHQIAK-RA 66
+ D+H+ M + H+K+N+ +D + +S + E + A+ L + +M +A RA
Sbjct: 311 TIDEHLDMLMVCHHLKNNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRA 370
Query: 67 TE 68
E
Sbjct: 371 GE 372
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 91 RRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVEKLTVVN 139
RRR+ C CG+ F + +K + CDEC +++ ++
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
Length = 613
Score = 27.3 bits (59), Expect = 2.9, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 10 FDDHVKMNKIAEHVKDNVSDDKYKE----------SELALEELGAQLSKSKLQVSDLMEE 59
D++ K NK + + N SDDKY +++L+EL A K+ ++D
Sbjct: 185 LDNYTKSNK-SILLTMNTSDDKYNHDKVRAAEELIKKISLDELAAFRPYVKMSLADSFSI 243
Query: 60 HQIAKRATEAQW 71
H A QW
Sbjct: 244 HPYLNNANIQQW 255
>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
Length = 616
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 10 FDDHVKMNKIAEHVKDNVSDDKYKE----------SELALEELGAQLSKSKLQVSDLMEE 59
D++ K NK + + N SDDKY +++L+EL A K+ ++D
Sbjct: 188 LDNYTKSNK-SILLTMNTSDDKYNHDKVRAAEELIKKISLDELAAFRPYVKMSLADSFSI 246
Query: 60 HQIAKRATEAQW 71
H A QW
Sbjct: 247 HPYLNNANIQQW 258
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 26.9 bits (58), Expect = 3.5, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 9 SFDDHVK--MNKIAEHVKDNVSDDKYKESELALEELGAQLSKSKLQVSDLMEEHQI 62
+F +H++ + +I E ++ SD +E E+AL + + K ++ V + H+I
Sbjct: 1010 AFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGIFNPHEI 1065
>pdb|1UBP|C Chain C, Crystal Structure Of Urease From Bacillus Pasteurii
Inhibited With Beta-Mercaptoethanol At 1.65 Angstroms
Resolution
pdb|2UBP|C Chain C, Structure Of Native Urease From Bacillus Pasteurii
pdb|3UBP|C Chain C, Diamidophosphate Inhibited Bacillus Pasteurii Urease
pdb|4UBP|C Chain C, Structure Of Bacillus Pasteurii Urease Inhibited With
Acetohydroxamic Acid At 1.55 A Resolution
pdb|1S3T|C Chain C, Borate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|4AC7|C Chain C, The Crystal Structure Of Sporosarcina Pasteurii Urease In
Complex With Citrate
Length = 570
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 9 SFDDHVKMNKIAEHVKDNVSDD-KYKESELALEELGAQLSKSKLQVSDLMEEHQIAK-RA 66
+ D+H+ M + H+K N+ +D + +S + E + A+ L + +M +A RA
Sbjct: 311 TIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRA 370
Query: 67 TE 68
E
Sbjct: 371 GE 372
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 75 KEAITCRACDKEFTVTRRRHHCRNCGEIFCNMC-------SDNKMALPSAAKPVRVCDEC 127
+E + C C + FT + R +CG C C S N + P +K R+
Sbjct: 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL- 71
Query: 128 NVKLVEKLTVVNS 140
+L + LTV+ S
Sbjct: 72 -TQLTDNLTVLKS 83
>pdb|3OFL|A Chain A, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|B Chain B, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|C Chain C, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|D Chain D, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|E Chain E, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|F Chain F, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|G Chain G, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|H Chain H, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|I Chain I, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|J Chain J, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|K Chain K, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|L Chain L, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|M Chain M, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|N Chain N, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|O Chain O, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
Length = 427
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 13 HVKMNKIAEHVKDNVSDDKYKESELAL 39
H + ++E V+DNVS D YK+++L +
Sbjct: 114 HAATSNVSEDVRDNVSVD-YKQTQLCI 139
>pdb|2R5I|A Chain A, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|B Chain B, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|C Chain C, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|D Chain D, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|E Chain E, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|F Chain F, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|G Chain G, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|H Chain H, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|I Chain I, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|J Chain J, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|K Chain K, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|L Chain L, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|M Chain M, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|N Chain N, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|O Chain O, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
Length = 428
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 13 HVKMNKIAEHVKDNVSDDKYKESELAL 39
H + ++E V+DNVS D YK+++L +
Sbjct: 114 HAATSNVSEDVRDNVSVD-YKQTQLCI 139
>pdb|2R1F|A Chain A, Crystal Structure Of Predicted Aminodeoxychorismate
Lyase From Escherichia Coli
pdb|2R1F|B Chain B, Crystal Structure Of Predicted Aminodeoxychorismate
Lyase From Escherichia Coli
Length = 270
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 10 FDDHVKMNKIAEHVKDNVSDDKYKESELALE 40
D++K + A ++K +SDDKY ALE
Sbjct: 50 LSDYLKQLREAPYIKHTLSDDKYATVAQALE 80
>pdb|1ZGR|A Chain A, Crystal Structure Of The Parkia Platycephala Seed Lectin
pdb|1ZGR|B Chain B, Crystal Structure Of The Parkia Platycephala Seed Lectin
pdb|1ZGS|A Chain A, Parkia Platycephala Seed Lectin In Complex With
5-Bromo-4- Chloro-3-Indolyl-A-D-Mannose
pdb|1ZGS|B Chain B, Parkia Platycephala Seed Lectin In Complex With
5-Bromo-4- Chloro-3-Indolyl-A-D-Mannose
Length = 447
Score = 25.4 bits (54), Expect = 9.9, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 3 SGGLKRSFDDHVKMNKIAEHVKDNVSDDKYKES 35
SGG SF + + +I HVKDN+ +K++
Sbjct: 14 SGGNYWSFKANHAITEIVIHVKDNIKSISFKDA 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.128 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,844,442
Number of Sequences: 62578
Number of extensions: 127185
Number of successful extensions: 443
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 34
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)