Query psy1895
Match_columns 140
No_of_seqs 195 out of 1109
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:59:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yw8_A RUN and FYVE domain-con 99.9 1.5E-26 5.3E-31 154.9 4.0 73 68-140 10-82 (82)
2 1joc_A EEA1, early endosomal a 99.9 4.8E-25 1.6E-29 158.3 9.5 65 69-133 61-125 (125)
3 1x4u_A Zinc finger, FYVE domai 99.9 1.2E-24 4E-29 146.3 5.4 71 68-138 5-83 (84)
4 1z2q_A LM5-1; membrane protein 99.9 5.7E-24 1.9E-28 143.0 3.8 69 67-135 11-81 (84)
5 3t7l_A Zinc finger FYVE domain 99.9 7.6E-24 2.6E-28 144.1 3.3 72 63-134 6-77 (90)
6 1vfy_A Phosphatidylinositol-3- 99.8 1.2E-22 4E-27 133.2 1.5 63 68-133 5-69 (73)
7 1wfk_A Zinc finger, FYVE domai 99.8 3.7E-21 1.3E-25 130.4 4.1 64 74-137 6-70 (88)
8 3zyq_A Hepatocyte growth facto 99.8 4E-20 1.4E-24 144.1 4.9 66 67-135 157-224 (226)
9 1dvp_A HRS, hepatocyte growth 99.8 6.5E-20 2.2E-24 142.0 5.9 63 68-133 155-219 (220)
10 1y02_A CARP2, FYVE-ring finger 99.7 1.8E-19 6.2E-24 128.4 1.9 61 68-134 10-70 (120)
11 3mpx_A FYVE, rhogef and PH dom 99.7 3.1E-19 1E-23 148.4 1.0 70 64-133 362-432 (434)
12 2vrw_B P95VAV, VAV1, proto-onc 98.0 2.3E-06 7.9E-11 70.3 2.2 44 67-110 347-391 (406)
13 1zbd_B Rabphilin-3A; G protein 97.6 0.0003 1E-08 50.4 7.8 54 75-131 53-108 (134)
14 2zet_C Melanophilin; complex, 97.5 0.00039 1.3E-08 50.9 7.3 50 76-130 67-117 (153)
15 3ky9_A Proto-oncogene VAV; cal 95.8 0.0037 1.3E-07 53.7 2.3 44 67-110 519-563 (587)
16 2csz_A Synaptotagmin-like prot 95.3 0.0051 1.7E-07 40.0 1.0 51 75-131 23-74 (76)
17 1wff_A Riken cDNA 2810002D23 p 94.3 0.036 1.2E-06 36.7 3.3 32 74-107 22-53 (85)
18 1wfh_A Zinc finger (AN1-like) 94.1 0.036 1.2E-06 34.8 2.8 31 74-107 12-42 (64)
19 2ecm_A Ring finger and CHY zin 93.2 0.012 4.1E-07 34.3 -0.5 50 76-131 4-53 (55)
20 1wg2_A Zinc finger (AN1-like) 93.1 0.073 2.5E-06 33.4 2.9 30 75-107 13-42 (64)
21 1wfl_A Zinc finger protein 216 92.7 0.085 2.9E-06 33.9 3.0 29 76-107 24-52 (74)
22 1iym_A EL5; ring-H2 finger, ub 92.4 0.032 1.1E-06 32.5 0.6 48 77-130 5-52 (55)
23 2a20_A Regulating synaptic mem 92.4 0.11 3.9E-06 32.0 3.0 54 74-130 6-60 (62)
24 1wfp_A Zinc finger (AN1-like) 91.9 0.15 5E-06 32.8 3.3 31 74-107 22-52 (74)
25 1z60_A TFIIH basal transcripti 91.5 0.02 6.9E-07 35.3 -1.0 32 78-110 16-47 (59)
26 3fl2_A E3 ubiquitin-protein li 90.8 0.059 2E-06 36.9 0.6 46 79-133 54-99 (124)
27 1bor_A Transcription factor PM 90.5 0.22 7.7E-06 29.3 3.0 45 75-132 4-48 (56)
28 4ayc_A E3 ubiquitin-protein li 90.3 0.1 3.5E-06 36.4 1.6 44 79-132 55-98 (138)
29 2ect_A Ring finger protein 126 90.3 0.13 4.3E-06 32.1 1.8 53 75-134 13-65 (78)
30 2d8t_A Dactylidin, ring finger 90.0 0.04 1.4E-06 34.0 -0.7 49 75-133 13-61 (71)
31 2egp_A Tripartite motif-contai 89.3 0.1 3.4E-06 32.4 0.7 52 77-132 12-64 (79)
32 2e72_A POGO transposable eleme 89.0 0.089 3E-06 31.1 0.3 35 68-103 4-40 (49)
33 2ecv_A Tripartite motif-contai 88.8 0.041 1.4E-06 34.5 -1.4 53 76-132 18-70 (85)
34 2jrp_A Putative cytoplasmic pr 88.7 0.12 4.2E-06 33.8 0.9 55 79-133 4-63 (81)
35 2ysl_A Tripartite motif-contai 88.0 0.074 2.5E-06 32.6 -0.6 51 75-132 18-68 (73)
36 2ecl_A Ring-box protein 2; RNF 87.8 0.11 3.7E-06 33.1 0.1 59 68-132 6-75 (81)
37 1x4w_A Hypothetical protein FL 87.0 0.26 9E-06 31.0 1.6 38 69-107 6-45 (67)
38 3l11_A E3 ubiquitin-protein li 85.2 0.17 5.9E-06 33.9 0.0 47 77-132 15-61 (115)
39 2ecn_A Ring finger protein 141 84.7 0.19 6.4E-06 30.5 0.1 47 76-133 14-60 (70)
40 2ep4_A Ring finger protein 24; 84.5 0.12 4.2E-06 31.8 -0.9 52 75-133 13-64 (74)
41 2ct2_A Tripartite motif protei 83.6 0.47 1.6E-05 29.8 1.6 53 76-131 14-66 (88)
42 1jm7_B BARD1, BRCA1-associated 83.5 0.4 1.4E-05 32.3 1.3 43 78-131 23-65 (117)
43 2ysj_A Tripartite motif-contai 81.8 0.5 1.7E-05 28.0 1.2 34 75-112 18-51 (63)
44 3lrq_A E3 ubiquitin-protein li 81.2 0.4 1.4E-05 31.5 0.6 45 79-131 24-68 (100)
45 2ecy_A TNF receptor-associated 80.8 0.11 3.8E-06 31.4 -2.1 47 77-132 15-61 (66)
46 1twf_L ABC10-alpha, DNA-direct 80.3 0.62 2.1E-05 29.4 1.2 26 78-103 29-56 (70)
47 2ecw_A Tripartite motif-contai 79.7 0.19 6.4E-06 31.3 -1.4 53 76-132 18-70 (85)
48 1v87_A Deltex protein 2; ring- 79.6 0.25 8.6E-06 32.9 -0.9 54 78-132 26-93 (114)
49 2l0b_A E3 ubiquitin-protein li 79.6 0.16 5.3E-06 33.0 -1.9 50 76-132 39-88 (91)
50 2ea6_A Ring finger protein 4; 77.1 0.6 2.1E-05 27.8 0.4 51 75-131 13-66 (69)
51 3ng2_A RNF4, snurf, ring finge 76.8 0.6 2.1E-05 28.1 0.4 51 76-132 9-62 (71)
52 2yur_A Retinoblastoma-binding 76.8 1.3 4.4E-05 27.2 2.0 48 77-131 15-62 (74)
53 2ecj_A Tripartite motif-contai 76.5 1 3.5E-05 25.8 1.4 32 76-111 14-45 (58)
54 2djb_A Polycomb group ring fin 75.9 1.1 3.7E-05 27.3 1.4 49 76-133 14-62 (72)
55 1x4j_A Ring finger protein 38; 75.1 1.2 4.3E-05 27.2 1.5 50 76-132 22-71 (75)
56 1chc_A Equine herpes virus-1 r 75.0 1.5 5.1E-05 26.1 1.8 47 77-132 5-51 (68)
57 2jne_A Hypothetical protein YF 74.8 0.61 2.1E-05 31.5 0.0 55 78-132 33-92 (101)
58 4gzn_C ZFP-57, zinc finger pro 74.7 1.2 4.1E-05 26.6 1.3 25 79-103 6-42 (60)
59 2kiz_A E3 ubiquitin-protein li 73.8 1.4 4.7E-05 26.4 1.5 53 75-134 12-64 (69)
60 2lv2_A Insulinoma-associated p 73.5 1.8 6.1E-05 27.7 2.0 29 75-103 26-66 (85)
61 2ct7_A Ring finger protein 31; 73.3 2.1 7.3E-05 27.4 2.4 32 79-110 27-60 (86)
62 1wd2_A Ariadne-1 protein homol 72.5 3 0.0001 25.2 2.8 34 77-110 6-43 (60)
63 1jm7_A BRCA1, breast cancer ty 71.5 1.1 3.7E-05 29.4 0.6 47 79-132 23-69 (112)
64 3ztg_A E3 ubiquitin-protein li 71.4 1.4 4.8E-05 27.9 1.1 49 76-131 12-60 (92)
65 2csy_A Zinc finger protein 183 71.0 1.5 5.3E-05 27.1 1.3 46 76-131 14-59 (81)
66 2xeu_A Ring finger protein 4; 70.9 1 3.5E-05 26.3 0.3 50 77-132 3-55 (64)
67 1vd4_A Transcription initiatio 68.5 1.4 4.6E-05 25.8 0.5 28 77-104 14-50 (62)
68 4a0k_B E3 ubiquitin-protein li 68.3 1.1 3.6E-05 30.9 0.0 56 69-130 40-109 (117)
69 2lce_A B-cell lymphoma 6 prote 68.0 4.3 0.00015 23.9 2.8 16 73-88 13-28 (74)
70 2ckl_B Ubiquitin ligase protei 67.8 1.4 4.6E-05 31.3 0.5 46 78-131 55-100 (165)
71 2y43_A E3 ubiquitin-protein li 67.5 1.5 5E-05 28.4 0.6 46 78-132 23-68 (99)
72 1t1h_A Gspef-atpub14, armadill 67.4 1.7 5.9E-05 26.6 0.9 47 77-132 8-54 (78)
73 1g25_A CDK-activating kinase a 66.6 1.2 4.3E-05 26.4 0.1 50 78-132 4-54 (65)
74 3j20_Y 30S ribosomal protein S 66.6 2.1 7.3E-05 25.1 1.1 27 77-103 19-47 (50)
75 1x4v_A Hypothetical protein LO 66.2 3.6 0.00012 25.4 2.2 27 77-106 12-40 (63)
76 3uk3_C Zinc finger protein 217 66.0 3.2 0.00011 23.0 1.8 10 79-88 6-15 (57)
77 2ckl_A Polycomb group ring fin 65.8 1.6 5.4E-05 28.7 0.5 46 78-132 16-61 (108)
78 1z6u_A NP95-like ring finger p 65.3 9.7 0.00033 26.7 4.7 47 78-133 79-125 (150)
79 2ctu_A Zinc finger protein 483 65.0 2.7 9.4E-05 24.3 1.5 28 77-104 18-50 (73)
80 1bbo_A Human enhancer-binding 65.0 4 0.00014 22.5 2.1 10 79-88 3-12 (57)
81 2adr_A ADR1; transcription reg 63.8 4.1 0.00014 22.8 2.0 10 79-88 4-13 (60)
82 1wys_A Riken cDNA 2310008M20 p 62.3 6 0.0002 25.2 2.7 28 77-107 14-43 (75)
83 1vq8_1 50S ribosomal protein L 60.6 3.7 0.00013 24.9 1.4 16 87-102 9-26 (57)
84 2lcq_A Putative toxin VAPC6; P 60.3 3.2 0.00011 29.5 1.3 23 79-101 134-156 (165)
85 2gqj_A Zinc finger protein KIA 58.5 2.1 7.3E-05 27.2 0.1 26 78-103 25-64 (98)
86 4ap4_A E3 ubiquitin ligase RNF 58.4 2.3 8E-05 28.3 0.3 52 75-132 70-124 (133)
87 4ic3_A E3 ubiquitin-protein li 58.4 1.1 3.9E-05 27.6 -1.2 41 79-133 26-67 (74)
88 1e4u_A Transcriptional repress 58.0 3.5 0.00012 25.9 1.1 52 75-132 9-61 (78)
89 1x5w_A Zinc finger protein 64, 57.0 5.1 0.00017 23.3 1.7 11 78-88 10-20 (70)
90 3t6p_A Baculoviral IAP repeat- 56.2 3.8 0.00013 33.1 1.3 42 78-133 296-338 (345)
91 2cot_A Zinc finger protein 435 55.9 12 0.00041 22.0 3.3 14 75-88 16-29 (77)
92 4ayb_P DNA-directed RNA polyme 55.6 5.7 0.00019 23.2 1.6 23 79-101 5-31 (48)
93 1x6e_A Zinc finger protein 24; 55.4 5.7 0.00019 23.3 1.7 12 77-88 14-25 (72)
94 3hct_A TNF receptor-associated 54.7 3.7 0.00013 27.4 0.8 46 77-131 18-63 (118)
95 1pft_A TFIIB, PFTFIIBN; N-term 53.0 6.7 0.00023 22.3 1.7 26 78-103 6-34 (50)
96 1wim_A KIAA0161 protein; ring 52.9 4.7 0.00016 25.7 1.1 35 77-112 5-39 (94)
97 2d9h_A Zinc finger protein 692 52.3 5.7 0.00019 23.6 1.3 11 78-88 8-18 (78)
98 2jmo_A Parkin; IBR, E3 ligase, 51.2 16 0.00056 22.9 3.5 35 76-110 24-67 (80)
99 1rmd_A RAG1; V(D)J recombinati 50.6 4.1 0.00014 26.9 0.5 46 78-132 24-69 (116)
100 3knv_A TNF receptor-associated 50.4 4.1 0.00014 28.4 0.5 47 76-131 30-76 (141)
101 2kdx_A HYPA, hydrogenase/ureas 49.4 6.6 0.00023 26.6 1.4 24 78-101 74-98 (119)
102 3dpl_R Ring-box protein 1; ubi 49.3 5.3 0.00018 26.6 0.9 56 69-130 29-98 (106)
103 2eps_A POZ-, at HOOK-, and zin 48.5 6.4 0.00022 21.8 1.1 11 78-88 13-23 (54)
104 2ctd_A Zinc finger protein 512 48.0 5.6 0.00019 25.4 0.8 10 78-87 35-44 (96)
105 1vq8_Z 50S ribosomal protein L 45.2 7.4 0.00025 25.1 1.1 29 79-107 29-59 (83)
106 2gmg_A Hypothetical protein PF 44.7 9.5 0.00032 25.9 1.6 9 79-87 69-77 (105)
107 3na7_A HP0958; flagellar bioge 44.6 69 0.0023 24.2 6.7 28 78-105 199-234 (256)
108 2ct1_A Transcriptional repress 44.0 11 0.00036 22.3 1.6 11 78-88 16-26 (77)
109 3j21_g 50S ribosomal protein L 43.0 8.9 0.0003 22.6 1.1 23 78-102 15-37 (51)
110 1llm_C Chimera of ZIF23-GCN4; 42.4 9.9 0.00034 23.1 1.3 10 79-88 5-14 (88)
111 2dmd_A Zinc finger protein 64, 42.2 14 0.00049 22.4 2.1 11 78-88 9-19 (96)
112 2epr_A POZ-, at HOOK-, and zin 42.0 9.7 0.00033 20.3 1.1 11 78-88 13-23 (48)
113 2k4x_A 30S ribosomal protein S 41.6 14 0.00048 21.9 1.9 27 77-103 18-46 (55)
114 3h0g_L DNA-directed RNA polyme 41.4 13 0.00045 22.8 1.7 24 78-101 22-46 (63)
115 2c2l_A CHIP, carboxy terminus 41.2 75 0.0026 23.3 6.4 47 77-132 208-254 (281)
116 2lt7_A Transcriptional regulat 40.3 10 0.00035 25.7 1.2 25 79-103 52-88 (133)
117 3j21_e 50S ribosomal protein L 40.2 12 0.00041 23.0 1.4 7 96-102 20-26 (62)
118 3cc2_Z 50S ribosomal protein L 39.6 9.8 0.00033 26.2 1.0 29 78-106 61-91 (116)
119 3k1f_M Transcription initiatio 39.2 14 0.00047 27.6 1.8 20 66-85 9-29 (197)
120 1wfe_A Riken cDNA 2310008M20 p 38.7 14 0.00047 24.0 1.6 26 78-106 26-53 (86)
121 3v2d_5 50S ribosomal protein L 38.4 11 0.00037 22.9 1.0 20 77-100 30-50 (60)
122 2kvh_A Zinc finger and BTB dom 38.3 12 0.00043 16.8 1.1 10 94-103 4-13 (27)
123 2y1n_A E3 ubiquitin-protein li 38.2 9.3 0.00032 31.5 0.9 47 78-133 333-379 (389)
124 2vje_A E3 ubiquitin-protein li 38.1 6.4 0.00022 23.4 -0.1 51 74-132 5-56 (64)
125 2kmk_A Zinc finger protein GFI 38.1 13 0.00046 21.7 1.4 11 78-88 30-40 (82)
126 2epq_A POZ-, at HOOK-, and zin 38.0 18 0.00062 18.7 1.9 11 78-88 11-21 (45)
127 4bbr_M Transcription initiatio 37.6 13 0.00044 29.8 1.6 39 66-104 9-53 (345)
128 1a1h_A QGSR zinc finger peptid 37.5 13 0.00045 22.2 1.3 11 78-88 35-45 (90)
129 2drp_A Protein (tramtrack DNA- 37.2 16 0.00055 20.6 1.6 11 78-88 11-21 (66)
130 2d8v_A Zinc finger FYVE domain 36.8 19 0.00064 22.4 1.9 27 78-109 9-36 (67)
131 2yt9_A Zinc finger-containing 36.6 20 0.00067 21.7 2.1 10 79-88 9-18 (95)
132 2dlq_A GLI-kruppel family memb 35.8 23 0.0008 22.3 2.4 11 78-88 36-46 (124)
133 2dmi_A Teashirt homolog 3; zin 35.5 17 0.00059 22.9 1.7 9 79-87 52-60 (115)
134 2ee8_A Protein ODD-skipped-rel 35.5 25 0.00085 21.7 2.5 12 77-88 17-28 (106)
135 2m0d_A Zinc finger and BTB dom 35.4 14 0.00049 16.6 1.0 11 93-103 3-13 (30)
136 3c5k_A HD6, histone deacetylas 35.4 24 0.00081 23.7 2.4 26 77-106 24-49 (109)
137 1znf_A 31ST zinc finger from X 35.4 13 0.00045 16.5 0.8 10 79-88 3-12 (27)
138 3a43_A HYPD, hydrogenase nicke 34.8 14 0.00046 25.9 1.2 14 78-91 71-84 (139)
139 3k7a_M Transcription initiatio 34.8 19 0.00065 28.6 2.2 34 70-103 13-52 (345)
140 3j21_i 50S ribosomal protein L 34.6 15 0.00053 23.7 1.3 26 78-105 36-65 (83)
141 2wbt_A B-129; zinc finger; 2.7 34.1 12 0.00043 24.2 0.9 26 78-103 75-110 (129)
142 1l8d_A DNA double-strand break 34.1 83 0.0028 20.4 5.0 12 77-88 47-58 (112)
143 2kvf_A Zinc finger and BTB dom 34.0 16 0.00054 16.5 1.0 10 94-103 4-13 (28)
144 2jsp_A Transcriptional regulat 33.9 8.6 0.0003 25.2 0.0 18 76-94 20-37 (87)
145 1ard_A Yeast transcription fac 33.8 14 0.00048 16.6 0.8 10 79-88 4-13 (29)
146 3hcs_A TNF receptor-associated 33.7 12 0.00042 26.2 0.8 33 76-112 17-49 (170)
147 3jyw_9 60S ribosomal protein L 33.6 19 0.00064 22.7 1.5 26 78-105 27-56 (72)
148 1rik_A E6APC1 peptide; E6-bind 33.6 16 0.00056 16.4 1.1 10 94-103 3-12 (29)
149 2fc7_A ZZZ3 protein; structure 33.5 18 0.00063 23.0 1.5 32 78-110 22-57 (82)
150 4a18_A RPL37, ribosomal protei 33.2 18 0.00062 23.9 1.5 7 96-102 19-25 (94)
151 2ecg_A Baculoviral IAP repeat- 33.2 10 0.00035 23.1 0.2 41 79-133 27-68 (75)
152 2ayj_A 50S ribosomal protein L 33.1 15 0.00051 22.1 1.0 23 77-101 19-41 (56)
153 6rxn_A Rubredoxin; electron tr 33.1 15 0.00051 21.1 0.9 13 92-104 3-15 (46)
154 1gh9_A 8.3 kDa protein (gene M 32.9 15 0.00052 23.0 1.0 23 79-103 6-30 (71)
155 3iz5_m 60S ribosomal protein L 32.6 19 0.00066 23.7 1.6 26 79-106 38-67 (92)
156 2csh_A Zinc finger protein 297 31.9 21 0.00072 22.3 1.7 10 79-88 39-48 (110)
157 2m0f_A Zinc finger and BTB dom 31.9 18 0.00062 16.1 1.1 10 94-103 3-12 (29)
158 1dl6_A Transcription factor II 31.7 28 0.00097 20.6 2.1 26 78-103 12-40 (58)
159 1x6h_A Transcriptional repress 31.7 22 0.00074 20.9 1.6 11 78-88 16-26 (86)
160 2m0e_A Zinc finger and BTB dom 31.6 16 0.00055 16.3 0.8 10 79-88 4-13 (29)
161 2lvu_A Zinc finger and BTB dom 37.8 9.9 0.00034 17.0 0.0 10 79-88 4-13 (26)
162 2kvg_A Zinc finger and BTB dom 31.4 16 0.00054 16.6 0.8 10 94-103 4-13 (27)
163 1yk4_A Rubredoxin, RD; electro 31.4 15 0.00053 21.4 0.8 13 93-105 2-14 (52)
164 1wjp_A Zinc finger protein 295 31.3 21 0.00071 22.3 1.6 10 79-88 44-53 (107)
165 1wil_A KIAA1045 protein; ring 31.1 22 0.00075 23.3 1.6 31 78-110 16-46 (89)
166 1paa_A Yeast transcription fac 30.9 17 0.00057 16.6 0.8 10 79-88 4-13 (30)
167 1f2i_G Fusion of N-terminal 17 30.8 25 0.00085 20.2 1.8 29 75-103 17-59 (73)
168 2dlk_A Novel protein; ZF-C2H2 30.2 17 0.00058 21.2 0.9 11 78-88 39-51 (79)
169 1wig_A KIAA1808 protein; LIM d 30.1 82 0.0028 18.7 4.2 16 120-135 52-67 (73)
170 3iz5_l 60S ribosomal protein L 29.5 17 0.0006 24.0 0.9 7 96-102 19-25 (94)
171 3vk6_A E3 ubiquitin-protein li 29.5 13 0.00045 25.0 0.3 30 78-110 2-31 (101)
172 3izc_m 60S ribosomal protein R 29.3 24 0.0008 23.3 1.5 27 78-106 37-67 (92)
173 2els_A Zinc finger protein 406 28.8 22 0.00074 17.2 1.1 12 92-103 8-19 (36)
174 1klr_A Zinc finger Y-chromosom 28.6 19 0.00066 16.1 0.8 11 79-89 4-14 (30)
175 1rh5_C Secbeta; protein transl 28.5 5.2 0.00018 23.8 -1.7 23 1-23 10-32 (53)
176 2puy_A PHD finger protein 21A; 28.2 91 0.0031 18.0 4.1 52 77-134 5-56 (60)
177 2hf1_A Tetraacyldisaccharide-1 28.1 24 0.00081 21.8 1.3 14 78-91 9-22 (68)
178 2jr6_A UPF0434 protein NMA0874 28.1 24 0.00082 21.8 1.4 26 77-108 8-33 (68)
179 1j0t_A MIH, MOLT-inhibiting ho 27.5 10 0.00036 24.3 -0.4 15 118-132 19-33 (78)
180 2yqq_A Zinc finger HIT domain- 27.4 37 0.0012 20.2 2.0 22 79-105 14-35 (56)
181 1rim_A E6APC2 peptide; E6-bind 27.4 20 0.0007 17.3 0.8 10 79-88 4-13 (33)
182 2kwq_A Protein MCM10 homolog; 27.2 22 0.00074 23.4 1.1 23 79-102 50-74 (92)
183 2jun_A Midline-1; B-BOX, TRIM, 27.1 20 0.00067 22.9 0.9 32 78-110 4-35 (101)
184 1p7a_A BF3, BKLF, kruppel-like 27.1 21 0.00071 17.4 0.8 12 78-89 12-23 (37)
185 2dkt_A Ring finger and CHY zin 26.6 26 0.00089 24.9 1.5 31 77-110 58-92 (143)
186 2v3b_B Rubredoxin 2, rubredoxi 26.5 21 0.00071 21.1 0.8 14 92-105 2-15 (55)
187 2lvt_A Zinc finger and BTB dom 32.2 14 0.00048 16.8 0.0 10 79-88 4-13 (29)
188 1e8j_A Rubredoxin; iron-sulfur 26.1 18 0.00063 21.1 0.5 13 92-104 2-14 (52)
189 2pk7_A Uncharacterized protein 25.9 29 0.00099 21.4 1.4 13 78-90 9-21 (69)
190 2elx_A Zinc finger protein 406 25.7 26 0.0009 16.6 1.0 11 93-103 7-17 (35)
191 2ej4_A Zinc finger protein ZIC 25.4 26 0.00089 21.1 1.2 20 69-88 16-36 (95)
192 2lvr_A Zinc finger and BTB dom 31.3 15 0.00051 16.7 0.0 10 79-88 5-14 (30)
193 2elr_A Zinc finger protein 406 25.3 35 0.0012 16.3 1.5 11 78-88 10-20 (36)
194 2kpi_A Uncharacterized protein 24.9 30 0.001 20.4 1.3 23 78-108 11-35 (56)
195 1x61_A Thyroid receptor intera 24.8 50 0.0017 19.3 2.4 19 119-137 52-70 (72)
196 3ifu_A Non-structural protein; 24.7 33 0.0011 24.6 1.7 20 98-117 19-38 (180)
197 3irb_A Uncharacterized protein 24.7 21 0.00072 25.0 0.7 20 79-100 49-68 (145)
198 4rxn_A Rubredoxin; electron tr 24.5 26 0.00087 20.7 0.9 13 92-104 2-14 (54)
199 1tot_A CREB-binding protein; z 24.2 15 0.0005 21.4 -0.2 27 78-107 7-34 (52)
200 1qxf_A GR2, 30S ribosomal prot 24.2 40 0.0014 20.8 1.8 27 79-105 9-38 (66)
201 2jny_A Uncharacterized BCR; st 24.1 31 0.0011 21.2 1.3 13 78-90 11-23 (67)
202 2ea5_A Cell growth regulator w 24.0 35 0.0012 20.4 1.6 44 76-133 14-58 (68)
203 1vyx_A ORF K3, K3RING; zinc-bi 24.0 14 0.00049 21.9 -0.3 20 70-89 40-59 (60)
204 2elt_A Zinc finger protein 406 23.9 30 0.001 16.5 1.1 11 93-103 9-19 (36)
205 2gnr_A Conserved hypothetical 23.8 23 0.00079 24.9 0.8 22 78-101 48-69 (145)
206 3j20_W 30S ribosomal protein S 23.7 42 0.0014 20.5 1.8 27 79-105 17-46 (63)
207 2ct0_A Non-SMC element 1 homol 23.6 56 0.0019 20.2 2.5 51 75-132 13-63 (74)
208 2elv_A Zinc finger protein 406 23.4 32 0.0011 16.5 1.1 11 93-103 9-19 (36)
209 1ovx_A ATP-dependent CLP prote 23.4 21 0.00071 22.2 0.4 12 120-131 39-50 (67)
210 2kfq_A FP1; protein, de novo p 23.4 19 0.00067 17.1 0.2 10 79-88 4-13 (32)
211 2apo_B Ribosome biogenesis pro 23.3 34 0.0012 20.7 1.4 23 77-103 6-28 (60)
212 3h0g_I DNA-directed RNA polyme 23.1 42 0.0014 22.4 2.0 28 77-104 4-37 (113)
213 2vje_B MDM4 protein; proto-onc 23.0 16 0.00056 21.5 -0.2 48 77-132 7-55 (63)
214 1srk_A Zinc finger protein ZFP 23.0 32 0.0011 16.4 1.0 11 93-103 7-17 (35)
215 2d9k_A FLN29 gene product; zin 22.8 18 0.0006 21.9 -0.0 33 77-109 17-51 (75)
216 4a17_Y RPL37A, 60S ribosomal p 22.8 26 0.00089 23.6 0.8 27 78-106 37-67 (103)
217 2ds5_A CLPX, ATP-dependent CLP 22.8 23 0.0008 20.7 0.5 12 120-131 32-43 (51)
218 2ghf_A ZHX1, zinc fingers and 22.7 20 0.0007 23.3 0.3 13 76-88 17-29 (102)
219 4b6d_A RAC GTPase-activating p 22.3 34 0.0012 20.4 1.2 31 77-107 19-49 (61)
220 2l6l_A DNAJ homolog subfamily 22.2 1.8E+02 0.0062 19.8 5.3 30 79-111 114-143 (155)
221 2elo_A Zinc finger protein 406 22.1 25 0.00085 17.0 0.5 12 92-103 8-19 (37)
222 1k81_A EIF-2-beta, probable tr 22.1 25 0.00085 18.9 0.5 24 79-102 2-30 (36)
223 2jw6_A Deformed epidermal auto 21.8 41 0.0014 18.8 1.5 24 77-105 9-33 (52)
224 2d8q_A BLU protein, zinc finge 21.8 50 0.0017 20.1 2.0 24 77-105 15-39 (70)
225 2elq_A Zinc finger protein 406 21.8 35 0.0012 16.4 1.1 11 93-103 9-19 (36)
226 2elp_A Zinc finger protein 406 21.6 35 0.0012 16.5 1.1 12 92-103 8-19 (37)
227 1lko_A Rubrerythrin all-iron(I 21.5 33 0.0011 24.9 1.3 12 93-104 155-166 (191)
228 1gnf_A Transcription factor GA 21.4 37 0.0013 19.3 1.2 17 77-93 4-20 (46)
229 1d4u_A Nucleotide excision rep 21.2 59 0.002 22.0 2.4 9 120-128 25-33 (111)
230 2i13_A AART; DNA binding, zinc 21.2 33 0.0011 23.7 1.2 10 79-88 51-60 (190)
231 2dj8_A Protein CBFA2T1; zinc f 21.1 64 0.0022 18.8 2.3 26 75-105 13-39 (60)
232 3pwf_A Rubrerythrin; non heme 21.1 46 0.0016 23.9 2.0 13 92-104 137-149 (170)
233 2yte_A Zinc finger protein 473 20.9 32 0.0011 17.1 0.8 12 78-89 11-22 (42)
234 2js4_A UPF0434 protein BB2007; 20.6 37 0.0013 21.0 1.2 14 77-90 8-21 (70)
235 2yho_A E3 ubiquitin-protein li 20.5 20 0.00068 22.2 -0.1 41 79-133 20-61 (79)
236 2elu_A Zinc finger protein 406 20.4 27 0.00093 18.7 0.4 13 91-103 7-19 (37)
237 2d8s_A Cellular modulator of i 20.4 16 0.00053 23.0 -0.7 54 75-132 13-69 (80)
238 1fv5_A First zinc finger of U- 20.3 25 0.00084 18.5 0.2 13 77-89 8-20 (36)
239 1dx8_A Rubredoxin; electron tr 20.1 34 0.0012 21.2 0.9 14 91-104 5-18 (70)
No 1
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.92 E-value=1.5e-26 Score=154.94 Aligned_cols=73 Identities=56% Similarity=1.185 Sum_probs=60.2
Q ss_pred CCccccCcCCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhhccccCCCC
Q psy1895 68 EAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVEKLTVVNS 140 (140)
Q Consensus 68 ~~~W~~~~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~~~~~~~s 140 (140)
.+.|+||+++..|+.|+++|++++||||||+||+|||+.|+.++++||...+|+|||+.||..|.++++++++
T Consensus 10 ~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~~~~~~~~ 82 (82)
T 2yw8_A 10 GHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQRCSSTAS 82 (82)
T ss_dssp -----CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTTC-------
T ss_pred CCccccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHHHhccccCC
Confidence 3899999999999999999999999999999999999999999999999999999999999999998887764
No 2
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.92 E-value=4.8e-25 Score=158.31 Aligned_cols=65 Identities=54% Similarity=1.085 Sum_probs=62.7
Q ss_pred CccccCcCCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhhc
Q psy1895 69 AQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVE 133 (140)
Q Consensus 69 ~~W~~~~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~ 133 (140)
+.|+||.++..|+.|+++|++++||||||+||.|||+.|+.+.+++|...+|+|||+.||..|++
T Consensus 61 ~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~~~p~RVC~~C~~~l~g 125 (125)
T 1joc_A 61 RKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDLQG 125 (125)
T ss_dssp CCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHHHHHTTC
T ss_pred CccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCCCCCCCEeCHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999999889999999999998864
No 3
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.2e-24 Score=146.30 Aligned_cols=71 Identities=28% Similarity=0.598 Sum_probs=65.0
Q ss_pred CCccccCcCCccccccccccccccccccccccCceEeCCCCCCeeeCCCC--------CCCcccCcccHHHhhccccCC
Q psy1895 68 EAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSA--------AKPVRVCDECNVKLVEKLTVV 138 (140)
Q Consensus 68 ~~~W~~~~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~--------~~~~RVC~~C~~~l~~~~~~~ 138 (140)
.+.|+||.++..|+.|+++|++++||||||+||+|||+.|+.++++||.. .+|+|||+.||..|.....++
T Consensus 5 ~~~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~~~~~ 83 (84)
T 1x4u_A 5 SSGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKSGPSS 83 (84)
T ss_dssp CCCSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSCCSCC
T ss_pred CCccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhccCCCC
Confidence 48999999999999999999999999999999999999999999999875 268999999999998766543
No 4
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.89 E-value=5.7e-24 Score=143.00 Aligned_cols=69 Identities=42% Similarity=0.945 Sum_probs=64.4
Q ss_pred cCCccccCcCCccccccccccccccccccccccCceEeCCCCCCeeeCCCC--CCCcccCcccHHHhhccc
Q psy1895 67 TEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSA--AKPVRVCDECNVKLVEKL 135 (140)
Q Consensus 67 ~~~~W~~~~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~--~~~~RVC~~C~~~l~~~~ 135 (140)
..+.|+||.++..|+.|+++|++++||||||+||+|||+.|+.++++||.. .+|+|||+.||..|....
T Consensus 11 ~~~~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~~~ 81 (84)
T 1z2q_A 11 SKGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSSN 81 (84)
T ss_dssp CCSCCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHTSC
T ss_pred CCCccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhhcc
Confidence 458999999999999999999999999999999999999999999999987 599999999999987643
No 5
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.88 E-value=7.6e-24 Score=144.15 Aligned_cols=72 Identities=38% Similarity=0.846 Sum_probs=66.5
Q ss_pred HhhccCCccccCcCCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhhcc
Q psy1895 63 AKRATEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVEK 134 (140)
Q Consensus 63 ~l~~~~~~W~~~~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~~ 134 (140)
.++...|.|++|.++..|+.|+++|++++||||||+||.|||+.|+.+++++|...+|+|||+.||..|...
T Consensus 6 ~l~~~~p~W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~~ 77 (90)
T 3t7l_A 6 VLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISKA 77 (90)
T ss_dssp CTTTSCCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHHH
T ss_pred ccCCCCCcCcccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHHH
Confidence 345566999999999999999999999999999999999999999999999998889999999999998643
No 6
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.85 E-value=1.2e-22 Score=133.24 Aligned_cols=63 Identities=41% Similarity=0.961 Sum_probs=56.7
Q ss_pred CCccccCcCCccccccccccccccccccccccCceEeCCCCCCeeeCCCC--CCCcccCcccHHHhhc
Q psy1895 68 EAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSA--AKPVRVCDECNVKLVE 133 (140)
Q Consensus 68 ~~~W~~~~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~--~~~~RVC~~C~~~l~~ 133 (140)
+|.|+++. .|+.|+++|++++||||||+||+|||+.|+.++++||.. .+|+|||+.||..|..
T Consensus 5 ~p~W~~~~---~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~ 69 (73)
T 1vfy_A 5 PADWIDSD---ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYEF 69 (73)
T ss_dssp --CCCCCS---BCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred CCcCccCC---cccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCCCCCCEECHHHHHHHHH
Confidence 48999974 899999999999999999999999999999999999976 5899999999998764
No 7
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.82 E-value=3.7e-21 Score=130.41 Aligned_cols=64 Identities=28% Similarity=0.662 Sum_probs=57.8
Q ss_pred CcCCccccccccccccccccccccccCceEeCCCCCCeeeCCCC-CCCcccCcccHHHhhccccC
Q psy1895 74 DKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSA-AKPVRVCDECNVKLVEKLTV 137 (140)
Q Consensus 74 ~~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~-~~~~RVC~~C~~~l~~~~~~ 137 (140)
+.++..|+.|+++|++++||||||+||+|||+.|+.++++||.. .+|+|||+.||..|.....+
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~~~~ 70 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGSSD 70 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCCCC
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhcccc
Confidence 45667899999999999999999999999999999999999987 68999999999999865443
No 8
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.79 E-value=4e-20 Score=144.10 Aligned_cols=66 Identities=39% Similarity=0.922 Sum_probs=59.2
Q ss_pred cCCccccCcCCccccccccccccccccccccccCceEeCCCCCCeeeCCCC--CCCcccCcccHHHhhccc
Q psy1895 67 TEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSA--AKPVRVCDECNVKLVEKL 135 (140)
Q Consensus 67 ~~~~W~~~~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~--~~~~RVC~~C~~~l~~~~ 135 (140)
..|.|+++ ..|+.|+++|++++||||||+||++||+.|+.+++++|.. .+|+|||+.||..|....
T Consensus 157 ~~p~W~~~---~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~~~ 224 (226)
T 3zyq_A 157 RAPDWVDA---EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKA 224 (226)
T ss_dssp CCCCCCCC---SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC--
T ss_pred cccccccC---CCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhhhc
Confidence 46899986 4899999999999999999999999999999999999975 689999999999988654
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.79 E-value=6.5e-20 Score=141.99 Aligned_cols=63 Identities=46% Similarity=1.044 Sum_probs=58.1
Q ss_pred CCccccCcCCccccccccccccccccccccccCceEeCCCCCCeeeCCCC--CCCcccCcccHHHhhc
Q psy1895 68 EAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSA--AKPVRVCDECNVKLVE 133 (140)
Q Consensus 68 ~~~W~~~~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~--~~~~RVC~~C~~~l~~ 133 (140)
.|.|+++ ..|+.|+++|++++||||||+||+|||+.|+.+++++|.. .+|+|||+.||..|..
T Consensus 155 ~~~W~~~---~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C~~~l~~ 219 (220)
T 1dvp_A 155 APNWADG---RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR 219 (220)
T ss_dssp CCCCCCC---SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred cccCCCC---CccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCCCCCCEeCHHHHHHHhc
Confidence 5899986 5999999999999999999999999999999999999875 6899999999998864
No 10
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=99.75 E-value=1.8e-19 Score=128.40 Aligned_cols=61 Identities=23% Similarity=0.488 Sum_probs=44.7
Q ss_pred CCccccCcCCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhhcc
Q psy1895 68 EAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVEK 134 (140)
Q Consensus 68 ~~~W~~~~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~~ 134 (140)
.+.|.||.++..|+.|+.+|++++||||||+||.|||+.|+.++++ ++|||+.||..+...
T Consensus 10 ~~~~~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~------~vRVC~~C~~~~~~~ 70 (120)
T 1y02_A 10 SSFPSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN------GPRLCLLCQRFRATA 70 (120)
T ss_dssp ----------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----------CCEEHHHHHHHHTT
T ss_pred ccCCcCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC------CceECHHHHHHHhcc
Confidence 4779999999999999999999999999999999999999999865 599999999987643
No 11
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.1e-19 Score=148.38 Aligned_cols=70 Identities=33% Similarity=0.690 Sum_probs=0.0
Q ss_pred hhccCCccccCcCCccccccccccccccccccccccCceEeCCCCCCeeeCCCC-CCCcccCcccHHHhhc
Q psy1895 64 KRATEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSA-AKPVRVCDECNVKLVE 133 (140)
Q Consensus 64 l~~~~~~W~~~~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~-~~~~RVC~~C~~~l~~ 133 (140)
++...|.|+||.++..|+.|+.+|+++.|+||||+||.+||..|+.+++++|.. .+|+|||+.||..|..
T Consensus 362 ~~~~~p~w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~~ 432 (434)
T 3mpx_A 362 LGERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELKK 432 (434)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cccCCCcCCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHHh
Confidence 444569999999999999999999999999999999999999999999999865 7899999999998864
No 12
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=97.97 E-value=2.3e-06 Score=70.33 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=40.8
Q ss_pred cCCccccCcCCcccccccccc-ccccccccccccCceEeCCCCCC
Q psy1895 67 TEAQWAKDKEAITCRACDKEF-TVTRRRHHCRNCGEIFCNMCSDN 110 (140)
Q Consensus 67 ~~~~W~~~~~~~~C~~C~~~F-~~~~rkhhCr~CG~i~C~~Cs~~ 110 (140)
....|.++..+..|..|+..| +++++.|||+.||.++|..|+..
T Consensus 347 h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 347 HDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 458999999999999999999 49999999999999999999875
No 13
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=97.57 E-value=0.0003 Score=50.41 Aligned_cols=54 Identities=19% Similarity=0.539 Sum_probs=43.9
Q ss_pred cCCcccccccccccc-ccccccccccCceEeCCCCCCeeeCCC-CCCCcccCcccHHHh
Q psy1895 75 KEAITCRACDKEFTV-TRRRHHCRNCGEIFCNMCSDNKMALPS-AAKPVRVCDECNVKL 131 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~-~~rkhhCr~CG~i~C~~Cs~~~~~lp~-~~~~~RVC~~C~~~l 131 (140)
.....|..|.++|++ ..+.+.|..|..-||..|..+. +. ...+.-+|..|++.-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~---~~~~~~~~W~C~vC~k~r 108 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET---SNNRPHPVWLCKICLEQR 108 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC---CCSSSSCCEEEHHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc---CCCCCccceechhhHHHH
Confidence 356789999999984 5778889999999999998753 22 357889999998763
No 14
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=97.46 E-value=0.00039 Score=50.89 Aligned_cols=50 Identities=24% Similarity=0.729 Sum_probs=41.6
Q ss_pred CCccccccccccccc-cccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHH
Q psy1895 76 EAITCRACDKEFTVT-RRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVK 130 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~-~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~ 130 (140)
....|..|.++|+++ .+.+-|..|..-||..|..+ ++ ..+.-+|..|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---~~--~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---HP--EEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---CS--SSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccc---cC--CCCcEeeHHHHHH
Confidence 357999999999965 77888999999999999954 23 4678999999876
No 15
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=95.77 E-value=0.0037 Score=53.71 Aligned_cols=44 Identities=18% Similarity=0.366 Sum_probs=39.5
Q ss_pred cCCccccCcCCcccccccccc-ccccccccccccCceEeCCCCCC
Q psy1895 67 TEAQWAKDKEAITCRACDKEF-TVTRRRHHCRNCGEIFCNMCSDN 110 (140)
Q Consensus 67 ~~~~W~~~~~~~~C~~C~~~F-~~~~rkhhCr~CG~i~C~~Cs~~ 110 (140)
....|.+...+..|..|+..| +++.+.|+|+.||.++|..|...
T Consensus 519 H~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 519 HDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp CCEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred CceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence 346778888999999999997 79999999999999999999886
No 16
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.27 E-value=0.0051 Score=39.97 Aligned_cols=51 Identities=20% Similarity=0.576 Sum_probs=40.7
Q ss_pred cCCcccccccccccc-ccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHh
Q psy1895 75 KEAITCRACDKEFTV-TRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKL 131 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~-~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l 131 (140)
.....|..|+.+|++ +.+-..|+.|-+-+|.+|-.+. ..+.-.|..|++..
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~------~~~~W~C~VC~k~~ 74 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE------SNGTWRCKVCSGPS 74 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC------STTCEEEHHHHSSC
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccccccC------CCCCEEEeeCchhh
Confidence 345689999999995 5677789999999999997653 12778999998753
No 17
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=94.35 E-value=0.036 Score=36.67 Aligned_cols=32 Identities=31% Similarity=0.707 Sum_probs=25.6
Q ss_pred CcCCccccccccccccccccccccccCceEeCCC
Q psy1895 74 DKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMC 107 (140)
Q Consensus 74 ~~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~C 107 (140)
......|..|+++.+++ ....|| ||.+||...
T Consensus 22 k~~~~rC~~C~kkvgl~-~~f~Cr-Cg~~FC~~H 53 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLA-TSFECR-CGNNFCASH 53 (85)
T ss_dssp CCCCCBCSSSCCBCSSS-SCEECT-TCCEECTTT
T ss_pred cccCccchhhCCeeccc-CCeEcC-CCCEecccC
Confidence 34557899999998876 458997 999998754
No 18
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=94.14 E-value=0.036 Score=34.77 Aligned_cols=31 Identities=32% Similarity=0.810 Sum_probs=24.7
Q ss_pred CcCCccccccccccccccccccccccCceEeCCC
Q psy1895 74 DKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMC 107 (140)
Q Consensus 74 ~~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~C 107 (140)
......|..|+++.+++ ...|| ||.+||...
T Consensus 12 k~~~~rC~~C~kkvgl~--~f~Cr-Cg~~FC~~H 42 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLT--GFMCR-CGTTFCGSH 42 (64)
T ss_dssp CSSCCCCTTTCCCCCTT--CEECS-SSCEECTTT
T ss_pred CCcCCcChhhCCccCcc--CEEee-cCCEecccc
Confidence 33456899999998877 68895 999998754
No 19
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=93.24 E-value=0.012 Score=34.31 Aligned_cols=50 Identities=18% Similarity=0.439 Sum_probs=33.8
Q ss_pred CCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHh
Q psy1895 76 EAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKL 131 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l 131 (140)
+...|.+|...|..-.....-..||++||..|...+.... ..|..|...+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG------YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT------CCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC------CcCCCCCCcC
Confidence 3457999999886433444556799999999987654321 5566665443
No 20
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=93.08 E-value=0.073 Score=33.35 Aligned_cols=30 Identities=30% Similarity=0.821 Sum_probs=24.2
Q ss_pred cCCccccccccccccccccccccccCceEeCCC
Q psy1895 75 KEAITCRACDKEFTVTRRRHHCRNCGEIFCNMC 107 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~C 107 (140)
.....|..|+++.+++ ...| .||.+||...
T Consensus 13 ~~~~rC~~C~kkvgl~--~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVM--GFKC-KCGSTFCGSH 42 (64)
T ss_dssp CCSCSCTTTCCCCTTS--CEEC-TTSCEECSSS
T ss_pred CcCCcChhhCCccccc--CeEe-ecCCEecccC
Confidence 3456899999998876 6889 6999998754
No 21
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=92.74 E-value=0.085 Score=33.94 Aligned_cols=29 Identities=34% Similarity=0.942 Sum_probs=23.7
Q ss_pred CCccccccccccccccccccccccCceEeCCC
Q psy1895 76 EAITCRACDKEFTVTRRRHHCRNCGEIFCNMC 107 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~C 107 (140)
....|..|+++..++ ...|| ||.+||...
T Consensus 24 ~~nRC~~CrKkvgL~--gf~Cr-Cg~~FCs~H 52 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLT--GFDCR-CGNLFCGLH 52 (74)
T ss_dssp CTTBCSSSCCBCGGG--CEECT-TSCEECSSS
T ss_pred cCCcChhhCCccccc--CeecC-CCCEechhc
Confidence 345799999998876 47899 999998754
No 22
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=92.38 E-value=0.032 Score=32.45 Aligned_cols=48 Identities=21% Similarity=0.499 Sum_probs=32.1
Q ss_pred CccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHH
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVK 130 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~ 130 (140)
...|.+|...|..-..-..-..||++||..|...+.. ....|..|...
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~------~~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG------SHSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT------TCCSCSSSCCC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH------cCCcCcCCCCE
Confidence 4579999998875333333346999999999876532 23467777543
No 23
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=92.37 E-value=0.11 Score=32.03 Aligned_cols=54 Identities=31% Similarity=0.735 Sum_probs=40.3
Q ss_pred CcCCcccccccc-ccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHH
Q psy1895 74 DKEAITCRACDK-EFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVK 130 (140)
Q Consensus 74 ~~~~~~C~~C~~-~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~ 130 (140)
.++...|.+|.+ +|.- ---|.|..|-.-||.+|..+ ++|. ..+-.-||..|.+.
T Consensus 6 ~~d~~~C~iC~KTKFAD-G~Gh~C~yCk~r~CaRCGg~-v~lr-~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 6 KGDAPTCGICHKTKFAD-GCGHNCSYCQTKFCARCGGR-VSLR-SNKVMWVCNLCRKQ 60 (62)
T ss_dssp SSCCCCCSSSSCSCCCS-SCCEEBTTTCCEECTTSEEE-EESS-TTCEEEEEHHHHHH
T ss_pred cCCcchhhhhccceecc-CCCccccccCCeeecccCCE-eeec-CCeEEEEehhhhhc
Confidence 445678999998 3442 33478999999999999876 4553 36778899999764
No 24
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=91.91 E-value=0.15 Score=32.84 Aligned_cols=31 Identities=35% Similarity=0.876 Sum_probs=25.0
Q ss_pred CcCCccccccccccccccccccccccCceEeCCC
Q psy1895 74 DKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMC 107 (140)
Q Consensus 74 ~~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~C 107 (140)
......|..|+++..++ ...| .||.+||...
T Consensus 22 k~~~~RC~~C~kkvgL~--~f~C-rCg~~FCs~H 52 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVT--GFKC-RCGSTFCGTH 52 (74)
T ss_dssp TCCCCBCSSSCCBCTTT--CEEC-TTSCEECTTT
T ss_pred cccCccchhhcCccccc--ceEe-ccCCEecccc
Confidence 33557899999998887 6889 5999998754
No 25
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=91.54 E-value=0.02 Score=35.34 Aligned_cols=32 Identities=25% Similarity=0.590 Sum_probs=25.5
Q ss_pred ccccccccccccccccccccccCceEeCCCCCC
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDN 110 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~ 110 (140)
..|..|+++|.... .+.|..|+.+||..|=.+
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~f 47 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVF 47 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHH
Confidence 46999999996322 378999999999998544
No 26
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=90.81 E-value=0.059 Score=36.85 Aligned_cols=46 Identities=22% Similarity=0.480 Sum_probs=31.6
Q ss_pred cccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhhc
Q psy1895 79 TCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVE 133 (140)
Q Consensus 79 ~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~ 133 (140)
.|.+|...|.--.. -.||++||..|...... .....|..|...+..
T Consensus 54 ~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 54 QCICCQELVFRPIT----TVCQHNVCKDCLDRSFR-----AQVFSCPACRYDLGR 99 (124)
T ss_dssp BCTTTSSBCSSEEE----CTTSCEEEHHHHHHHHH-----TTCCBCTTTCCBCCT
T ss_pred CCCcCChHHcCcEE----eeCCCcccHHHHHHHHh-----HCcCCCCCCCccCCC
Confidence 69999988772211 27999999999876543 233577777766543
No 27
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.48 E-value=0.22 Score=29.29 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=31.1
Q ss_pred cCCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 75 KEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
.+...|.+|...|..- .--.||++||..|... ....|..|...+.
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~---------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA---------SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS---------SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHcc---------CCCCCCcCCcEee
Confidence 3445799999888732 2246999999999765 2456777766544
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=90.34 E-value=0.1 Score=36.41 Aligned_cols=44 Identities=25% Similarity=0.598 Sum_probs=29.6
Q ss_pred cccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 79 TCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 79 ~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
.|.+|...|.-- .--.||+.||..|...+.. ....|..|...+.
T Consensus 55 ~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCIICSEYFIEA----VTLNCAHSFCSYCINEWMK------RKIECPICRKDIK 98 (138)
T ss_dssp BCTTTCSBCSSE----EEETTSCEEEHHHHHHHTT------TCSBCTTTCCBCC
T ss_pred CCcccCcccCCc----eECCCCCCccHHHHHHHHH------cCCcCCCCCCcCC
Confidence 699999887521 1236999999999765432 2345777765543
No 29
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=90.32 E-value=0.13 Score=32.06 Aligned_cols=53 Identities=15% Similarity=0.477 Sum_probs=35.6
Q ss_pred cCCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhhcc
Q psy1895 75 KEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVEK 134 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~~ 134 (140)
.+...|.+|...|..-.. ..--.||++||..|...++. ....|..|...+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGES-VRQLPCNHLFHDSCIVPWLE------QHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSC-EEECTTSCEEETTTTHHHHT------TTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCC-EEEeCCCCeecHHHHHHHHH------cCCcCcCcCCccCCc
Confidence 345689999998863221 11125999999999987642 225788888776543
No 30
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.04 E-value=0.04 Score=33.97 Aligned_cols=49 Identities=18% Similarity=0.449 Sum_probs=33.2
Q ss_pred cCCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhhc
Q psy1895 75 KEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVE 133 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~ 133 (140)
.+...|.+|...|..-. --.||++||..|...+.. ....|..|...+..
T Consensus 13 ~~~~~C~IC~~~~~~~~----~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPV----SLPCKHVFCYLCVKGASW------LGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEE----EETTTEEEEHHHHHHCTT------CSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCE----EccCCCHHHHHHHHHHHH------CCCcCcCcCchhCH
Confidence 34457999998775321 126999999999876432 22678888776654
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=89.30 E-value=0.1 Score=32.44 Aligned_cols=52 Identities=19% Similarity=0.451 Sum_probs=34.9
Q ss_pred CccccccccccccccccccccccCceEeCCCCCCeeeCCCC-CCCcccCcccHHHhh
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSA-AKPVRVCDECNVKLV 132 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~-~~~~RVC~~C~~~l~ 132 (140)
...|.+|...|.--.. -.||++||..|.......... ......|..|...+.
T Consensus 12 ~~~C~IC~~~~~~p~~----l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 12 EVTCPICLELLTEPLS----LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCEETTTTEECSSCCC----CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCCcCCCcccCCeeE----CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 4579999998863211 269999999998875543211 233567888877654
No 32
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.00 E-value=0.089 Score=31.11 Aligned_cols=35 Identities=29% Similarity=0.579 Sum_probs=27.9
Q ss_pred CCccccCcCCccccccccccccc--cccccccccCceE
Q psy1895 68 EAQWAKDKEAITCRACDKEFTVT--RRRHHCRNCGEIF 103 (140)
Q Consensus 68 ~~~W~~~~~~~~C~~C~~~F~~~--~rkhhCr~CG~i~ 103 (140)
.+.|+.. ....|..|++.|+++ .|+|-|..||..+
T Consensus 4 ~~~~~~~-~~~~CPrCn~~f~~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 4 GSSGQDG-GRKICPRCNAQFRVTEALRGHMCYCCPEMV 40 (49)
T ss_dssp SSSSCCS-SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred CcccccC-CceeCCcccccccchHHHHhhhhhcCcchh
Confidence 3677766 678999999999954 5678899998864
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.83 E-value=0.041 Score=34.52 Aligned_cols=53 Identities=25% Similarity=0.537 Sum_probs=33.9
Q ss_pred CCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 76 EAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
+...|.+|...|.--.. -.||++||..|................|..|...+.
T Consensus 18 ~~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLS----LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCTTTCSCCSSCBC----CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCCcccCCcee----CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 34689999998863221 269999999998764322100123567888876654
No 34
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=88.72 E-value=0.12 Score=33.76 Aligned_cols=55 Identities=18% Similarity=0.475 Sum_probs=32.0
Q ss_pred cccccccccccccccccccccCce-----EeCCCCCCeeeCCCCCCCcccCcccHHHhhc
Q psy1895 79 TCRACDKEFTVTRRRHHCRNCGEI-----FCNMCSDNKMALPSAAKPVRVCDECNVKLVE 133 (140)
Q Consensus 79 ~C~~C~~~F~~~~rkhhCr~CG~i-----~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~ 133 (140)
.|+.|+.+...-.+.+||..|+.- ||..|-..-..++.=+.....|..|...++.
T Consensus 4 ~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 4 TCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNGHGLISK 63 (81)
T ss_dssp CCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTTTCCCCT
T ss_pred CCCCCCCccccCCCceECccccccCCCcccCcchhhHHHHHHhcCCcCeeeccCCCEeec
Confidence 577777776666666667777754 6666655433332223335566666666543
No 35
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.00 E-value=0.074 Score=32.61 Aligned_cols=51 Identities=20% Similarity=0.433 Sum_probs=34.0
Q ss_pred cCCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 75 KEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
.+...|.+|...|.--.. -.||++||..|...+... ......|..|...+.
T Consensus 18 ~~~~~C~IC~~~~~~~~~----~~CgH~fC~~Ci~~~~~~---~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVT----IDCGHNFCLKCITQIGET---SCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCSSEEE----CTTCCEEEHHHHHHHCSS---SCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccCCeEE----cCCCChhhHHHHHHHHHc---CCCCCCCCCCCCcCC
Confidence 344689999998773211 279999999998765431 123457888876553
No 36
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.80 E-value=0.11 Score=33.13 Aligned_cols=59 Identities=22% Similarity=0.402 Sum_probs=40.5
Q ss_pred CCccccCcCCccccccccccccc----------cc-cccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 68 EAQWAKDKEAITCRACDKEFTVT----------RR-RHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 68 ~~~W~~~~~~~~C~~C~~~F~~~----------~r-khhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
.+.|..|.+...|.+|...|... .. ...-..||++|+..|....+. ....|..|...+.
T Consensus 6 ~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 6 SGMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK------QNNRCPLCQQDWV 75 (81)
T ss_dssp CCCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT------TCCBCTTTCCBCC
T ss_pred eEEeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH------hCCCCCCcCCCcc
Confidence 36787788888999999999541 11 112236999999999877542 2247888876543
No 37
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.03 E-value=0.26 Score=31.04 Aligned_cols=38 Identities=21% Similarity=0.616 Sum_probs=27.4
Q ss_pred Ccccc-CcCCccccccccccccccc-cccccccCceEeCCC
Q psy1895 69 AQWAK-DKEAITCRACDKEFTVTRR-RHHCRNCGEIFCNMC 107 (140)
Q Consensus 69 ~~W~~-~~~~~~C~~C~~~F~~~~r-khhCr~CG~i~C~~C 107 (140)
|.|.+ ......|..|+++.++... -..| .||.+||...
T Consensus 6 p~~~~~~~~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 6 SGSRSKQKSRRRCFQCQTKLELVQQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp CSCCCSCSCTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTT
T ss_pred CCCccCCccCCcchhhCCeecccccCceEe-cCCCEehhcc
Confidence 44444 3346789999999886643 3789 8999998754
No 38
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=85.18 E-value=0.17 Score=33.92 Aligned_cols=47 Identities=17% Similarity=0.475 Sum_probs=32.3
Q ss_pred CccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
.-.|.+|...|.--.. -.||++||..|...... .....|..|...+.
T Consensus 15 ~~~C~iC~~~~~~p~~----~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVEPVT----LPCNHTLCKPCFQSTVE-----KASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSSCEE----CTTSCEECHHHHCCCCC-----TTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCceeE----cCCCCHHhHHHHHHHHh-----HCcCCCCCCCcccC
Confidence 3479999987763211 27999999999876542 22467888876654
No 39
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.70 E-value=0.19 Score=30.54 Aligned_cols=47 Identities=21% Similarity=0.485 Sum_probs=35.2
Q ss_pred CCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhhc
Q psy1895 76 EAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVE 133 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~ 133 (140)
+...|.+|...|.. .--.||++||..|...+.. ....|..|...+..
T Consensus 14 ~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD------RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC------CCSSCHHHHHCTTC
T ss_pred CCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH------CcCcCCCcCCcccC
Confidence 34689999998765 3356999999999876532 45779889887764
No 40
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.45 E-value=0.12 Score=31.77 Aligned_cols=52 Identities=19% Similarity=0.435 Sum_probs=34.6
Q ss_pred cCCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhhc
Q psy1895 75 KEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVE 133 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~ 133 (140)
.....|.+|...|..-..-.. -.||++||..|...+... ...|..|...+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~~~------~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGI-CPCKHAFHRKCLIKWLEV------RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEE-ETTTEEEEHHHHHHHHHH------CSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEE-cCCCCEecHHHHHHHHHc------CCcCCCcCccccc
Confidence 344689999998863322111 159999999998765431 2478888776654
No 41
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.56 E-value=0.47 Score=29.78 Aligned_cols=53 Identities=25% Similarity=0.520 Sum_probs=34.6
Q ss_pred CCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHh
Q psy1895 76 EAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKL 131 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l 131 (140)
+...|.+|...|....+.-.--.||++||..|...+.... .....|..|...+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS---INGVRCPFCSKIT 66 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC---SSCBCCTTTCCCB
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC---CCCcCCCCCCCcc
Confidence 3457999999887543322334799999999987654321 1245677776544
No 42
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=83.50 E-value=0.4 Score=32.31 Aligned_cols=43 Identities=21% Similarity=0.589 Sum_probs=29.5
Q ss_pred ccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHh
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKL 131 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l 131 (140)
-.|.+|...|.- -..-..||++||..|...... ..|..|...+
T Consensus 23 ~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--------~~CP~Cr~~~ 65 (117)
T 1jm7_B 23 LRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--------TGCPVCYTPA 65 (117)
T ss_dssp TSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--------TBCSSSCCBC
T ss_pred CCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--------CCCcCCCCcC
Confidence 369999887752 122227999999999876532 5677776654
No 43
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.76 E-value=0.5 Score=27.98 Aligned_cols=34 Identities=24% Similarity=0.543 Sum_probs=24.5
Q ss_pred cCCccccccccccccccccccccccCceEeCCCCCCee
Q psy1895 75 KEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKM 112 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~ 112 (140)
.+...|.+|...|.--.. -.||++||..|...+.
T Consensus 18 ~~~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVT----IDCGHNFCLKCITQIG 51 (63)
T ss_dssp CCCCBCTTTCSBCSSCEE----CTTSSEECHHHHHHHH
T ss_pred ccCCCCCcCCchhCCeEE----eCCCCcchHHHHHHHH
Confidence 344579999988763211 2799999999987654
No 44
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=81.18 E-value=0.4 Score=31.48 Aligned_cols=45 Identities=20% Similarity=0.598 Sum_probs=31.9
Q ss_pred cccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHh
Q psy1895 79 TCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKL 131 (140)
Q Consensus 79 ~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l 131 (140)
.|.+|...|. ....|-.||++||..|...+.... ...|..|...+
T Consensus 24 ~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~-----~~~CP~Cr~~~ 68 (100)
T 3lrq_A 24 RCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQ-----RAQCPHCRAPL 68 (100)
T ss_dssp BCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHT-----CSBCTTTCCBC
T ss_pred CCccCCcccc---CccccCCCCChhhHHHHHHHHHHC-----cCCCCCCCCcC
Confidence 6999998775 344567999999999987654321 15677776554
No 45
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.83 E-value=0.11 Score=31.36 Aligned_cols=47 Identities=21% Similarity=0.669 Sum_probs=32.1
Q ss_pred CccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
...|.+|...|.--.. -.||++||..|...+.. .....|..|...+.
T Consensus 15 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQ----TECGHRFCESCMAALLS-----SSSPKCTACQESIV 61 (66)
T ss_dssp CEECTTTCCEESSCCC----CSSSCCCCHHHHHHHHT-----TSSCCCTTTCCCCC
T ss_pred CCCCCCCChHhcCeeE----CCCCCHHHHHHHHHHHH-----hCcCCCCCCCcCCC
Confidence 4579999887763221 48999999999876542 23456777766543
No 46
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=80.29 E-value=0.62 Score=29.44 Aligned_cols=26 Identities=27% Similarity=0.935 Sum_probs=19.4
Q ss_pred cccccccccccccc-ccccccccCc-eE
Q psy1895 78 ITCRACDKEFTVTR-RRHHCRNCGE-IF 103 (140)
Q Consensus 78 ~~C~~C~~~F~~~~-rkhhCr~CG~-i~ 103 (140)
-.|..|+..|.+.. ...+|+.||. |+
T Consensus 29 Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 29 YICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp EECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EECCCCCCcceeCCCCCccCCCCCceEe
Confidence 46999999988753 3467888887 54
No 47
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=79.68 E-value=0.19 Score=31.32 Aligned_cols=53 Identities=21% Similarity=0.462 Sum_probs=34.7
Q ss_pred CCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 76 EAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
+...|.+|...|.--. . -.||++||..|................|..|...+.
T Consensus 18 ~~~~C~IC~~~~~~p~---~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELLKEPV---S-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCCSSCE---E-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhhCcce---e-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 3457999998876322 1 359999999998764432211233577888876654
No 48
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=79.63 E-value=0.25 Score=32.92 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=35.0
Q ss_pred cccccccccccccc--------------ccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 78 ITCRACDKEFTVTR--------------RRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 78 ~~C~~C~~~F~~~~--------------rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
..|.+|...|..-. ....--.||++||..|...++.... ......|..|...+.
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~-~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-KDGSLQCPSCKTIYG 93 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-CSSCCBCTTTCCBSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc-CCCCCcCCCCCCccC
Confidence 48999999885321 1111357999999999887653221 133568888876654
No 49
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=79.60 E-value=0.16 Score=32.97 Aligned_cols=50 Identities=16% Similarity=0.377 Sum_probs=33.3
Q ss_pred CCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 76 EAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
+...|.+|...|..-.. ..--.||++||..|...+.. ....|..|...+.
T Consensus 39 ~~~~C~IC~~~~~~~~~-~~~l~C~H~Fh~~Ci~~wl~------~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDV-ATELPCHHYFHKPCVSIWLQ------KSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTTCE-EEEETTTEEEEHHHHHHHHT------TTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcCCCc-EEecCCCChHHHHHHHHHHH------cCCcCcCcCccCC
Confidence 34579999988864221 12235999999999877642 2347888876543
No 50
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.08 E-value=0.6 Score=27.78 Aligned_cols=51 Identities=22% Similarity=0.671 Sum_probs=33.9
Q ss_pred cCCccccccccccccc---cccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHh
Q psy1895 75 KEAITCRACDKEFTVT---RRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKL 131 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~~---~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l 131 (140)
.+...|.+|...|..- .+...-..||++||..|...++.. ...|..|...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~ 66 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKI 66 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH------CSSCTTTCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc------CCCCCCCCCcc
Confidence 4456899999988642 222245689999999998765431 34677776544
No 51
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=76.83 E-value=0.6 Score=28.07 Aligned_cols=51 Identities=22% Similarity=0.670 Sum_probs=34.4
Q ss_pred CCccccccccccccc---cccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 76 EAITCRACDKEFTVT---RRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~---~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
+...|.+|...|..- .+...-..||++||..|...+.. ....|..|...+.
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKIN 62 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH------HCSBCTTTCCBCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH------cCCCCCCCCCccC
Confidence 345799999988642 12224568999999999876542 1246777766554
No 52
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=76.83 E-value=1.3 Score=27.17 Aligned_cols=48 Identities=19% Similarity=0.499 Sum_probs=31.8
Q ss_pred CccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHh
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKL 131 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l 131 (140)
...|.+|...|.- ...-..||++||..|...+... .....|..|...+
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~----~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 15 ELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLE----SDEHTCPTCHQND 62 (74)
T ss_dssp GGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHH----SSSSCCSSSCCSS
T ss_pred CCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHh----cCCCcCCCCCCcC
Confidence 4579999887763 2223449999999998765432 1235787787653
No 53
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.48 E-value=1 Score=25.82 Aligned_cols=32 Identities=22% Similarity=0.536 Sum_probs=23.7
Q ss_pred CCccccccccccccccccccccccCceEeCCCCCCe
Q psy1895 76 EAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNK 111 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~ 111 (140)
+...|.+|...|.--.. -.||++||..|...+
T Consensus 14 ~~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVI----IECGHNFCKACITRW 45 (58)
T ss_dssp CCCBCSSSCCBCSSCCC----CSSCCCCCHHHHHHH
T ss_pred cCCCCccCCcccCccEe----CCCCCccCHHHHHHH
Confidence 34579999998763211 369999999998765
No 54
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.88 E-value=1.1 Score=27.30 Aligned_cols=49 Identities=20% Similarity=0.511 Sum_probs=33.3
Q ss_pred CCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhhc
Q psy1895 76 EAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVE 133 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~ 133 (140)
+...|.+|...|.- ...-..||++||..|...+... ...|..|...+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY------SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH------CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc------CCcCCCcCcccCc
Confidence 34579999887753 2233479999999998765421 3567777766543
No 55
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.06 E-value=1.2 Score=27.16 Aligned_cols=50 Identities=22% Similarity=0.434 Sum_probs=33.7
Q ss_pred CCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 76 EAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
+...|.+|...|..-. ....-.||++||..|...+... ...|..|...+.
T Consensus 22 ~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~~------~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLKA------NRTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHHHH------CSSCTTTCCCCC
T ss_pred CCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHHHc------CCcCcCcCCcCC
Confidence 4568999999886422 2233469999999998775431 246888865543
No 56
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=74.95 E-value=1.5 Score=26.10 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=31.8
Q ss_pred CccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
...|.+|...|.- ...--.||++||..|...+.. ....|..|...+.
T Consensus 5 ~~~C~IC~~~~~~---~~~~~~C~H~fc~~Ci~~~~~------~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSN---YSMALPCLHAFCYVCITRWIR------QNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCS---CEEETTTTEEESTTHHHHHHH------HSCSTTTTCCCCC
T ss_pred CCCCeeCCccccC---CcEecCCCCeeHHHHHHHHHh------CcCcCcCCChhhH
Confidence 4579999988753 123457999999999876432 1246777766554
No 57
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=74.81 E-value=0.61 Score=31.49 Aligned_cols=55 Identities=20% Similarity=0.540 Sum_probs=33.4
Q ss_pred ccccccccccccccccccccccCce-----EeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEI-----FCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i-----~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
..|+.|+.+.......+||..|+.- +|..|-..-..|-.=+..--.|..|+..++
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~chgLiS 92 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGLIS 92 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTTEEEC
T ss_pred ccCccCCCcceecCCEEECccccchhhccccCcchhhHHHHHHHhcCcchhhccCCceee
Confidence 5799999998877777788888864 566665432222111223344555555443
No 58
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=74.66 E-value=1.2 Score=26.60 Aligned_cols=25 Identities=32% Similarity=0.849 Sum_probs=16.3
Q ss_pred cccccccccccc------------cccccccccCceE
Q psy1895 79 TCRACDKEFTVT------------RRRHHCRNCGEIF 103 (140)
Q Consensus 79 ~C~~C~~~F~~~------------~rkhhCr~CG~i~ 103 (140)
.|..|++.|... .+.+.|..||+.|
T Consensus 6 ~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F 42 (60)
T 4gzn_C 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCF 42 (60)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEE
T ss_pred cCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCc
Confidence 588888888621 2345677777766
No 59
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=73.79 E-value=1.4 Score=26.41 Aligned_cols=53 Identities=17% Similarity=0.396 Sum_probs=34.9
Q ss_pred cCCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhhcc
Q psy1895 75 KEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVEK 134 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~~ 134 (140)
.....|.+|...|..-. ....-.||++||..|...+... ...|..|...+...
T Consensus 12 ~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGE-DVRRLPCMHLFHQVCVDQWLIT------NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSS-CEEECTTSCEEEHHHHHHHHHH------CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCC-cEEEeCCCCHHHHHHHHHHHHc------CCCCcCcCccccCc
Confidence 34467999998875221 1233469999999998765432 23588887776543
No 60
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=73.45 E-value=1.8 Score=27.68 Aligned_cols=29 Identities=24% Similarity=0.660 Sum_probs=18.4
Q ss_pred cCCccccccccccccc------------cccccccccCceE
Q psy1895 75 KEAITCRACDKEFTVT------------RRRHHCRNCGEIF 103 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~~------------~rkhhCr~CG~i~ 103 (140)
...-.|..|++.|... .+.+.|..||+.|
T Consensus 26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F 66 (85)
T 2lv2_A 26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATF 66 (85)
T ss_dssp CTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEE
T ss_pred CCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEe
Confidence 3445799999999721 2244566666665
No 61
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=73.26 E-value=2.1 Score=27.45 Aligned_cols=32 Identities=25% Similarity=0.708 Sum_probs=23.0
Q ss_pred ccccccccccc--ccccccccccCceEeCCCCCC
Q psy1895 79 TCRACDKEFTV--TRRRHHCRNCGEIFCNMCSDN 110 (140)
Q Consensus 79 ~C~~C~~~F~~--~~rkhhCr~CG~i~C~~Cs~~ 110 (140)
-|+.|+..|.. -..+..|..||..||..|-..
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~ 60 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQ 60 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSB
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCc
Confidence 36667775532 234577999999999999763
No 62
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.53 E-value=3 Score=25.23 Aligned_cols=34 Identities=26% Similarity=0.647 Sum_probs=25.2
Q ss_pred Cccccccccccccccc--cccccc--cCceEeCCCCCC
Q psy1895 77 AITCRACDKEFTVTRR--RHHCRN--CGEIFCNMCSDN 110 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~r--khhCr~--CG~i~C~~Cs~~ 110 (140)
...|+.|+...-.... .-.|+. ||..||..|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~ 43 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGP 43 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSC
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCC
Confidence 4579999887664433 334888 999999999865
No 63
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=71.50 E-value=1.1 Score=29.40 Aligned_cols=47 Identities=21% Similarity=0.531 Sum_probs=30.4
Q ss_pred cccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 79 TCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 79 ~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
.|.+|...|.--.. -.||++||..|........ .....|..|...+.
T Consensus 23 ~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 23 ECPICLELIKEPVS----TKCDHIFCKFCMLKLLNQK---KGPSQCPLCKNDIT 69 (112)
T ss_dssp SCSSSCCCCSSCCB----CTTSCCCCSHHHHHHHHSS---SSSCCCTTTSCCCC
T ss_pred CCcccChhhcCeEE----CCCCCHHHHHHHHHHHHhC---CCCCCCcCCCCcCC
Confidence 69999887752111 3799999999987654321 12246777766554
No 64
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=71.44 E-value=1.4 Score=27.95 Aligned_cols=49 Identities=18% Similarity=0.507 Sum_probs=31.4
Q ss_pred CCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHh
Q psy1895 76 EAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKL 131 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l 131 (140)
+.-.|.+|...|.- -..-..||+.||..|......- .....|..|...+
T Consensus 12 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~----~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLE----SDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHH----CTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHh----cCCCcCcCCCCcC
Confidence 34579999987762 2222349999999998754321 1225677776654
No 65
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.05 E-value=1.5 Score=27.15 Aligned_cols=46 Identities=20% Similarity=0.545 Sum_probs=31.0
Q ss_pred CCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHh
Q psy1895 76 EAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKL 131 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l 131 (140)
....|.+|...|.--. --.||++||..|...+.. ....|..|...+
T Consensus 14 ~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~ 59 (81)
T 2csy_A 14 IPFRCFICRQAFQNPV----VTKCRHYFCESCALEHFR------ATPRCYICDQPT 59 (81)
T ss_dssp CCSBCSSSCSBCCSEE----ECTTSCEEEHHHHHHHHH------HCSBCSSSCCBC
T ss_pred CCCCCcCCCchhcCee----EccCCCHhHHHHHHHHHH------CCCcCCCcCccc
Confidence 3457999998875321 247999999999876542 134576676554
No 66
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=70.94 E-value=1 Score=26.31 Aligned_cols=50 Identities=22% Similarity=0.666 Sum_probs=32.9
Q ss_pred Cccccccccccccc---cccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 77 AITCRACDKEFTVT---RRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 77 ~~~C~~C~~~F~~~---~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
...|.+|...|..- .+...-..||++||..|...+... ...|..|...+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKIN 55 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH------CSBCTTTCCBCT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc------CCCCCCCCccCC
Confidence 34799999887642 122245689999999998765421 346777765543
No 67
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=68.49 E-value=1.4 Score=25.78 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=17.7
Q ss_pred Ccccccccccccc---c------cccccccccCceEe
Q psy1895 77 AITCRACDKEFTV---T------RRRHHCRNCGEIFC 104 (140)
Q Consensus 77 ~~~C~~C~~~F~~---~------~rkhhCr~CG~i~C 104 (140)
.-.|..|++.|.. + .+.+.|..||..|-
T Consensus 14 ~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp EEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred CccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 3469999999873 2 23345666666653
No 68
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=68.30 E-value=1.1 Score=30.93 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=6.3
Q ss_pred CccccCcCCccccccccccccccc----------cccc----cccCceEeCCCCCCeeeCCCCCCCcccCcccHHH
Q psy1895 69 AQWAKDKEAITCRACDKEFTVTRR----------RHHC----RNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVK 130 (140)
Q Consensus 69 ~~W~~~~~~~~C~~C~~~F~~~~r----------khhC----r~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~ 130 (140)
+.|.-|.....|.+|...|...-. ...| -.||++|+..|...++. ...+|..|...
T Consensus 40 a~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~------~~~~CP~Cr~~ 109 (117)
T 4a0k_B 40 ALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK------TRQVCPLDNRE 109 (117)
T ss_dssp EEEEECCCC-------------------------------------------------------------------
T ss_pred EEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH------cCCcCCCCCCe
Confidence 567667777899999999864210 1111 26999999999887643 24578888765
No 69
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=68.00 E-value=4.3 Score=23.93 Aligned_cols=16 Identities=19% Similarity=0.669 Sum_probs=11.9
Q ss_pred cCcCCccccccccccc
Q psy1895 73 KDKEAITCRACDKEFT 88 (140)
Q Consensus 73 ~~~~~~~C~~C~~~F~ 88 (140)
.....-.|..|++.|.
T Consensus 13 ~~~~~~~C~~C~k~f~ 28 (74)
T 2lce_A 13 HSDKPYKCDRCQASFR 28 (74)
T ss_dssp CCCCSBCCTTSSCCBS
T ss_pred CCCCCeECCCCCceeC
Confidence 3344567999999997
No 70
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=67.83 E-value=1.4 Score=31.32 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=32.2
Q ss_pred ccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHh
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKL 131 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l 131 (140)
..|.+|...|.- ......||++||..|...+... ....|..|...+
T Consensus 55 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLKN---TMTTKECLHRFCADCIITALRS-----GNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHT-----TCCBCTTTCCBC
T ss_pred CCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHh-----CcCCCCCCCCcC
Confidence 379999887763 2334589999999998775431 235688787655
No 71
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=67.51 E-value=1.5 Score=28.35 Aligned_cols=46 Identities=20% Similarity=0.600 Sum_probs=31.2
Q ss_pred ccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
..|.+|...|.- ......||+.||..|...+.. ....|..|...+.
T Consensus 23 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 23 LRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLS------YKTQCPTCCVTVT 68 (99)
T ss_dssp TBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHT------TCCBCTTTCCBCC
T ss_pred CCcccCChhhCC---cCEECCCCCHhhHHHHHHHHH------CCCCCCCCCCcCC
Confidence 369999887763 222247999999999876543 1246777766544
No 72
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=67.42 E-value=1.7 Score=26.59 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=31.1
Q ss_pred CccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
.-.|.+|...|.-- .--.||++||..|...... .....|..|...+.
T Consensus 8 ~~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~~~~-----~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 8 YFRCPISLELMKDP----VIVSTGQTYERSSIQKWLD-----AGHKTCPKSQETLL 54 (78)
T ss_dssp SSSCTTTSCCCSSE----EEETTTEEEEHHHHHHHHT-----TTCCBCTTTCCBCS
T ss_pred cCCCCCccccccCC----EEcCCCCeecHHHHHHHHH-----HCcCCCCCCcCCCC
Confidence 35799999877621 1127999999999876542 12456777766553
No 73
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=66.63 E-value=1.2 Score=26.37 Aligned_cols=50 Identities=22% Similarity=0.579 Sum_probs=30.8
Q ss_pred cccccccc-ccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 78 ITCRACDK-EFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 78 ~~C~~C~~-~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
..|.+|.. .|.--..+..=-.||++||..|...... .....|..|...+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV-----RGAGNCPECGTPLR 54 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH-----TTSSSCTTTCCCCS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH-----cCCCcCCCCCCccc
Confidence 36899987 5543222112247999999999876532 12345777766654
No 74
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.61 E-value=2.1 Score=25.05 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=16.5
Q ss_pred Cccccccccc-cc-cccccccccccCceE
Q psy1895 77 AITCRACDKE-FT-VTRRRHHCRNCGEIF 103 (140)
Q Consensus 77 ~~~C~~C~~~-F~-~~~rkhhCr~CG~i~ 103 (140)
...|+.|+.. |- .-..+++|..||.++
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 3568888773 21 223467788887664
No 75
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.16 E-value=3.6 Score=25.35 Aligned_cols=27 Identities=22% Similarity=0.737 Sum_probs=20.1
Q ss_pred Cccccc--cccccccccccccccccCceEeCC
Q psy1895 77 AITCRA--CDKEFTVTRRRHHCRNCGEIFCNM 106 (140)
Q Consensus 77 ~~~C~~--C~~~F~~~~rkhhCr~CG~i~C~~ 106 (140)
...|.. |.+. .++ ...|+.||..||..
T Consensus 12 ~~~Cs~~~Ck~~-~ll--~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 12 TNKCERAGCRQR-EMM--KLTCERCSRNFCIK 40 (63)
T ss_dssp CCCCCSTTCCCC-CSS--CCBCSSSCCBCCHH
T ss_pred CCCCCccCCCCC-Ccc--ceECCCCCcccCcc
Confidence 457876 8886 333 46999999999863
No 76
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=65.97 E-value=3.2 Score=22.96 Aligned_cols=10 Identities=40% Similarity=0.889 Sum_probs=7.8
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 6 ~C~~C~~~f~ 15 (57)
T 3uk3_C 6 ECSYCGKFFR 15 (57)
T ss_dssp BCTTTCCBCS
T ss_pred cCCCCcchhC
Confidence 5888888886
No 77
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=65.76 E-value=1.6 Score=28.72 Aligned_cols=46 Identities=22% Similarity=0.561 Sum_probs=31.3
Q ss_pred ccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
..|.+|...|.- ......||++||..|...+.. ....|..|...+.
T Consensus 16 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 16 LMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLE------TSKYCPICDVQVH 61 (108)
T ss_dssp TBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHT------SCSBCTTTCCBSC
T ss_pred CCCccCChHHhC---cCEeCCCCChhhHHHHHHHHH------hCCcCcCCCcccc
Confidence 469999887752 233348999999999876542 1266777766554
No 78
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=65.26 E-value=9.7 Score=26.69 Aligned_cols=47 Identities=19% Similarity=0.453 Sum_probs=31.2
Q ss_pred ccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhhc
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVE 133 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~ 133 (140)
..|.+|...|.--.. -.||++||..|...... .....|..|...+..
T Consensus 79 ~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVYQPVT----TECFHNVCKDCLQRSFK-----AQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCSSEEE----CTTSCEEEHHHHHHHHH-----TTCCBCTTTCCBCCT
T ss_pred CEeecCChhhcCCEE----cCCCCchhHHHHHHHHH-----hCCCcCCCCCccCCC
Confidence 369999887762211 48999999999876543 123467777665543
No 79
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.05 E-value=2.7 Score=24.31 Aligned_cols=28 Identities=25% Similarity=0.659 Sum_probs=20.1
Q ss_pred Cccccccccccccc-----cccccccccCceEe
Q psy1895 77 AITCRACDKEFTVT-----RRRHHCRNCGEIFC 104 (140)
Q Consensus 77 ~~~C~~C~~~F~~~-----~rkhhCr~CG~i~C 104 (140)
.-.|..|++.|... .+.+.|..||..|=
T Consensus 18 ~~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f~ 50 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSC 50 (73)
T ss_dssp EEECSSSCCEEECCCCCCCSSSCCCHHHHHTCS
T ss_pred CeeCCcccchhCCHHHhCcCCCCCCCCCChhhc
Confidence 34799999988632 45677888888763
No 80
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=65.01 E-value=4 Score=22.55 Aligned_cols=10 Identities=20% Similarity=0.720 Sum_probs=6.3
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 3 ~C~~C~~~f~ 12 (57)
T 1bbo_A 3 ICEECGIRXK 12 (57)
T ss_dssp BCTTTCCBCS
T ss_pred cCCCCcCcCC
Confidence 4666666665
No 81
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=63.78 E-value=4.1 Score=22.81 Aligned_cols=10 Identities=30% Similarity=1.125 Sum_probs=6.7
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 4 ~C~~C~~~f~ 13 (60)
T 2adr_A 4 VCEVCTRAFA 13 (60)
T ss_dssp CCTTTCCCBS
T ss_pred cCCCCccccC
Confidence 4667777765
No 82
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=62.34 E-value=6 Score=25.18 Aligned_cols=28 Identities=25% Similarity=0.705 Sum_probs=21.2
Q ss_pred Cccccc--cccccccccccccccccCceEeCCC
Q psy1895 77 AITCRA--CDKEFTVTRRRHHCRNCGEIFCNMC 107 (140)
Q Consensus 77 ~~~C~~--C~~~F~~~~rkhhCr~CG~i~C~~C 107 (140)
...|.. |++. .++ -..|+.||.+||...
T Consensus 14 g~~Cs~~~C~~~-dfl--pf~C~~C~~~FC~~H 43 (75)
T 1wys_A 14 GQHCQVQHCRQR-DFL--PFVCDGCSGIFCLEH 43 (75)
T ss_dssp CCCCSCTTTCCC-SCC--CEECTTTCCEECSTT
T ss_pred CCCcCcccCCCc-cce--eeECcccCcCcCccc
Confidence 457877 8886 333 678999999999853
No 83
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=60.61 E-value=3.7 Score=24.89 Aligned_cols=16 Identities=38% Similarity=0.758 Sum_probs=8.2
Q ss_pred ccccccccc--ccccCce
Q psy1895 87 FTVTRRRHH--CRNCGEI 102 (140)
Q Consensus 87 F~~~~rkhh--Cr~CG~i 102 (140)
|+-...+-| ||.||..
T Consensus 9 fGKr~~ktH~~CrRCG~~ 26 (57)
T 1vq8_1 9 QGKKNTTTHTKCRRCGEK 26 (57)
T ss_dssp HTTCCCCCEEECTTTCSE
T ss_pred ccccCCCccccccccCCh
Confidence 444344444 6666654
No 84
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=60.28 E-value=3.2 Score=29.51 Aligned_cols=23 Identities=26% Similarity=0.829 Sum_probs=10.9
Q ss_pred cccccccccccccccccccccCc
Q psy1895 79 TCRACDKEFTVTRRRHHCRNCGE 101 (140)
Q Consensus 79 ~C~~C~~~F~~~~rkhhCr~CG~ 101 (140)
.|..|++.|..+.....|..||.
T Consensus 134 ~C~~Cg~~~~~~~~~~~Cp~CG~ 156 (165)
T 2lcq_A 134 VCIGCGRKFSTLPPGGVCPDCGS 156 (165)
T ss_dssp EESSSCCEESSCCGGGBCTTTCC
T ss_pred ECCCCCCcccCCCCCCcCCCCCC
Confidence 45555555554433334444443
No 85
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.47 E-value=2.1 Score=27.16 Aligned_cols=26 Identities=19% Similarity=0.604 Sum_probs=17.5
Q ss_pred ccccccccccc-cc-------------cccccccccCceE
Q psy1895 78 ITCRACDKEFT-VT-------------RRRHHCRNCGEIF 103 (140)
Q Consensus 78 ~~C~~C~~~F~-~~-------------~rkhhCr~CG~i~ 103 (140)
-.|..|++.|. .. .+.+.|..||+.|
T Consensus 25 ~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F 64 (98)
T 2gqj_A 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQF 64 (98)
T ss_dssp CCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCC
T ss_pred cCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCcc
Confidence 47999999997 21 2345577777765
No 86
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=58.40 E-value=2.3 Score=28.26 Aligned_cols=52 Identities=21% Similarity=0.658 Sum_probs=32.9
Q ss_pred cCCccccccccccccc---cccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 75 KEAITCRACDKEFTVT---RRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~~---~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
.+...|.+|...|... .+....-.||++||..|...+.. ....|..|...+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH------HCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH------cCCCCCCCCCcCC
Confidence 3445688887777632 12224558999999999876542 2356777766554
No 87
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=58.38 E-value=1.1 Score=27.62 Aligned_cols=41 Identities=20% Similarity=0.565 Sum_probs=28.8
Q ss_pred cccccccccccccccccccccCce-EeCCCCCCeeeCCCCCCCcccCcccHHHhhc
Q psy1895 79 TCRACDKEFTVTRRRHHCRNCGEI-FCNMCSDNKMALPSAAKPVRVCDECNVKLVE 133 (140)
Q Consensus 79 ~C~~C~~~F~~~~rkhhCr~CG~i-~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~ 133 (140)
.|.+|...|.-.. --.||+. ||..|.... +.|..|...+..
T Consensus 26 ~C~iC~~~~~~~~----~~pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 26 LCKICMDRNIAIV----FVPCGHLVTCKQCAEAV----------DKCPMCYTVITF 67 (74)
T ss_dssp BCTTTSSSBCCEE----EETTCCBCCCHHHHTTC----------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCEE----EcCCCChhHHHHhhhcC----------ccCCCcCcCccC
Confidence 6999988765221 2379999 999997652 677777765543
No 88
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=57.96 E-value=3.5 Score=25.92 Aligned_cols=52 Identities=17% Similarity=0.577 Sum_probs=32.8
Q ss_pred cCCccccccccccccccccc-cccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 75 KEAITCRACDKEFTVTRRRH-HCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~~~rkh-hCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
.+...|.+|-.+|+.-.... -| .||+.||..|...... .....|..|...+.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~-----~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRT-----DENGLCPACRKPYP 61 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTT-----SSCSBCTTTCCBCS
T ss_pred ccCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHh-----cCCCCCCCCCCccC
Confidence 34458999999886432221 23 5999999999764321 12356777766543
No 89
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=57.02 E-value=5.1 Score=23.28 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=8.6
Q ss_pred ccccccccccc
Q psy1895 78 ITCRACDKEFT 88 (140)
Q Consensus 78 ~~C~~C~~~F~ 88 (140)
-.|..|++.|.
T Consensus 10 ~~C~~C~k~f~ 20 (70)
T 1x5w_A 10 EKCSECSYSCS 20 (70)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCcccC
Confidence 46888888886
No 90
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=56.24 E-value=3.8 Score=33.07 Aligned_cols=42 Identities=24% Similarity=0.585 Sum_probs=30.7
Q ss_pred ccccccccccccccccccccccCce-EeCCCCCCeeeCCCCCCCcccCcccHHHhhc
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEI-FCNMCSDNKMALPSAAKPVRVCDECNVKLVE 133 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i-~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~ 133 (140)
..|.+|...|.-.. --.||+. ||..|.... +.|..|...+..
T Consensus 296 ~~C~IC~~~~~~~v----~lpCgH~~fC~~C~~~~----------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 296 RTCKVCMDKEVSVV----FIPCGHLVVCQECAPSL----------RKCPICRGIIKG 338 (345)
T ss_dssp CBCTTTSSSBCCEE----EETTCCEEECTTTGGGC----------SBCTTTCCBCCE
T ss_pred CCCCccCCcCCceE----EcCCCChhHhHHHHhcC----------CcCCCCCCCccC
Confidence 57999999876221 2379999 999998642 678888776654
No 91
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=55.86 E-value=12 Score=22.02 Aligned_cols=14 Identities=29% Similarity=0.871 Sum_probs=11.0
Q ss_pred cCCccccccccccc
Q psy1895 75 KEAITCRACDKEFT 88 (140)
Q Consensus 75 ~~~~~C~~C~~~F~ 88 (140)
...-.|..|++.|.
T Consensus 16 ~~~~~C~~C~~~f~ 29 (77)
T 2cot_A 16 RRRYKCDECGKSFS 29 (77)
T ss_dssp SCSSBCSSSCCBCS
T ss_pred CCCEECCCCCcccC
Confidence 34567999999997
No 92
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=55.62 E-value=5.7 Score=23.19 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=16.4
Q ss_pred ccccccccccc----ccccccccccCc
Q psy1895 79 TCRACDKEFTV----TRRRHHCRNCGE 101 (140)
Q Consensus 79 ~C~~C~~~F~~----~~rkhhCr~CG~ 101 (140)
.|..|++.|+. ..--.+|..||.
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCc
Confidence 58899999983 233566888884
No 93
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=55.42 E-value=5.7 Score=23.27 Aligned_cols=12 Identities=33% Similarity=0.869 Sum_probs=9.3
Q ss_pred Cccccccccccc
Q psy1895 77 AITCRACDKEFT 88 (140)
Q Consensus 77 ~~~C~~C~~~F~ 88 (140)
.-.|..|++.|.
T Consensus 14 ~~~C~~C~k~f~ 25 (72)
T 1x6e_A 14 PYGCVECGKAFS 25 (72)
T ss_dssp CEECSSSCCEES
T ss_pred CccCCCCCCccC
Confidence 346888988886
No 94
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=54.72 E-value=3.7 Score=27.38 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=29.3
Q ss_pred CccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHh
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKL 131 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l 131 (140)
.-.|.+|...|.-- .. -.||++||..|...+.... ...|..|...+
T Consensus 18 ~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~ 63 (118)
T 3hct_A 18 KYECPICLMALREA---VQ-TPCGHRFCKACIIKSIRDA-----GHKCPVDNEIL 63 (118)
T ss_dssp GGBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHHH-----CSBCTTTCCBC
T ss_pred CCCCCcCChhhcCe---EE-CCcCChhhHHHHHHHHhhC-----CCCCCCCCCCc
Confidence 35799999877632 12 2699999999986543211 12666665544
No 95
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=53.02 E-value=6.7 Score=22.34 Aligned_cols=26 Identities=31% Similarity=0.761 Sum_probs=14.9
Q ss_pred cccccccc-ccc--cccccccccccCceE
Q psy1895 78 ITCRACDK-EFT--VTRRRHHCRNCGEIF 103 (140)
Q Consensus 78 ~~C~~C~~-~F~--~~~rkhhCr~CG~i~ 103 (140)
..|+.|+. .+. .-.....|..||.+|
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 46999977 432 222344566666655
No 96
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.95 E-value=4.7 Score=25.71 Aligned_cols=35 Identities=26% Similarity=0.679 Sum_probs=23.2
Q ss_pred CccccccccccccccccccccccCceEeCCCCCCee
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKM 112 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~ 112 (140)
...|.+|-..|..-. -..-..||+.||..|....+
T Consensus 5 ~~~C~IC~~~~~~~~-~~~l~~CgH~FC~~Cl~~~~ 39 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQ-MTTIAQCQCIFCTLCLKQYV 39 (94)
T ss_dssp BCCCSSSCCCCBGGG-EEEETTTTEEEEHHHHHHHH
T ss_pred CcCCcccCccccccc-ceEcCCCCCcccHHHHHHHH
Confidence 347999988765311 11123699999999987644
No 97
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.29 E-value=5.7 Score=23.55 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=8.0
Q ss_pred ccccccccccc
Q psy1895 78 ITCRACDKEFT 88 (140)
Q Consensus 78 ~~C~~C~~~F~ 88 (140)
-.|..|++.|.
T Consensus 8 ~~C~~C~k~f~ 18 (78)
T 2d9h_A 8 LQCEICGFTCR 18 (78)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCeeC
Confidence 35788888875
No 98
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=51.22 E-value=16 Score=22.89 Aligned_cols=35 Identities=26% Similarity=0.799 Sum_probs=23.8
Q ss_pred CCccccc--ccccccc--cccccccc-----ccCceEeCCCCCC
Q psy1895 76 EAITCRA--CDKEFTV--TRRRHHCR-----NCGEIFCNMCSDN 110 (140)
Q Consensus 76 ~~~~C~~--C~~~F~~--~~rkhhCr-----~CG~i~C~~Cs~~ 110 (140)
...-|+. |+..... -.++..|. .||..||..|...
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~ 67 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEA 67 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEE
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcc
Confidence 3455654 6664432 24567897 8999999999764
No 99
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=50.58 E-value=4.1 Score=26.93 Aligned_cols=46 Identities=20% Similarity=0.607 Sum_probs=29.6
Q ss_pred ccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
..|.+|...|.--.. -.||++||..|....... ....|..|...+.
T Consensus 24 ~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 24 ISCQICEHILADPVE----TSCKHLFCRICILRCLKV-----MGSYCPSCRYPCF 69 (116)
T ss_dssp TBCTTTCSBCSSEEE----CTTSCEEEHHHHHHHHHH-----TCSBCTTTCCBCC
T ss_pred CCCCCCCcHhcCcEE----cCCCCcccHHHHHHHHhH-----CcCcCCCCCCCCC
Confidence 369999887763211 379999999998654322 1235666665543
No 100
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=50.38 E-value=4.1 Score=28.42 Aligned_cols=47 Identities=19% Similarity=0.574 Sum_probs=32.2
Q ss_pred CCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHh
Q psy1895 76 EAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKL 131 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l 131 (140)
+.-.|.+|...|.-- .. -.||++||..|...... .....|..|...+
T Consensus 30 ~~~~C~IC~~~~~~p---v~-~~CgH~FC~~Ci~~~~~-----~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQ-AQCGHRYCSFCLASILS-----SGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHGG-----GSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcCc---EE-CCCCCccCHHHHHHHHh-----cCCCCCCCCCCcc
Confidence 345799999877522 12 38999999999877542 1235788887754
No 101
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=49.38 E-value=6.6 Score=26.55 Aligned_cols=24 Identities=21% Similarity=0.678 Sum_probs=14.0
Q ss_pred ccccccccccccccccc-cccccCc
Q psy1895 78 ITCRACDKEFTVTRRRH-HCRNCGE 101 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkh-hCr~CG~ 101 (140)
-.|..|+..|....... .|..||.
T Consensus 74 ~~C~~CG~~~e~~~~~~~~CP~Cgs 98 (119)
T 2kdx_A 74 LECKDCSHVFKPNALDYGVCEKCHS 98 (119)
T ss_dssp EECSSSSCEECSCCSTTCCCSSSSS
T ss_pred EEcCCCCCEEeCCCCCCCcCccccC
Confidence 35777777776654444 4555554
No 102
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=49.29 E-value=5.3 Score=26.64 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=37.9
Q ss_pred CccccCcCCcccccccccccccc----------cc----ccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHH
Q psy1895 69 AQWAKDKEAITCRACDKEFTVTR----------RR----HHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVK 130 (140)
Q Consensus 69 ~~W~~~~~~~~C~~C~~~F~~~~----------rk----hhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~ 130 (140)
+.|.-+.+...|.+|...|...- .. ..--.||++|+..|...++. ....|..|...
T Consensus 29 ~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~------~~~~CP~Cr~~ 98 (106)
T 3dpl_R 29 ALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK------TRQVCPLDNRE 98 (106)
T ss_dssp EEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT------TCSBCSSSCSB
T ss_pred eEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH------cCCcCcCCCCc
Confidence 56776777789999999887431 00 11247999999999877643 23567777654
No 103
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=48.49 E-value=6.4 Score=21.81 Aligned_cols=11 Identities=36% Similarity=1.068 Sum_probs=8.6
Q ss_pred ccccccccccc
Q psy1895 78 ITCRACDKEFT 88 (140)
Q Consensus 78 ~~C~~C~~~F~ 88 (140)
-.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (54)
T 2eps_A 13 YICQSCGKGFS 23 (54)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 46888888886
No 104
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=48.00 E-value=5.6 Score=25.40 Aligned_cols=10 Identities=20% Similarity=0.690 Sum_probs=8.3
Q ss_pred cccccccccc
Q psy1895 78 ITCRACDKEF 87 (140)
Q Consensus 78 ~~C~~C~~~F 87 (140)
-.|..|++.|
T Consensus 35 ~~C~~C~k~F 44 (96)
T 2ctd_A 35 VSCPTCQAVG 44 (96)
T ss_dssp EECTTTCSCE
T ss_pred cCCCCCCCCc
Confidence 3688999999
No 105
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=45.23 E-value=7.4 Score=25.14 Aligned_cols=29 Identities=17% Similarity=0.416 Sum_probs=20.8
Q ss_pred cccccccc--cccccccccccccCceEeCCC
Q psy1895 79 TCRACDKE--FTVTRRRHHCRNCGEIFCNMC 107 (140)
Q Consensus 79 ~C~~C~~~--F~~~~rkhhCr~CG~i~C~~C 107 (140)
.|+.|++. |..-....+|..||..|-..-
T Consensus 29 ~Cp~CG~~~v~r~atGiW~C~~Cg~~~agga 59 (83)
T 1vq8_Z 29 ACPNCGEDRVDRQGTGIWQCSYCDYKFTGGS 59 (83)
T ss_dssp ECSSSCCEEEEEEETTEEEETTTCCEEECCS
T ss_pred cCCCCCCcceeccCCCeEECCCCCCEecCCE
Confidence 69999983 334445678999999886543
No 106
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=44.74 E-value=9.5 Score=25.86 Aligned_cols=9 Identities=44% Similarity=1.080 Sum_probs=6.3
Q ss_pred ccccccccc
Q psy1895 79 TCRACDKEF 87 (140)
Q Consensus 79 ~C~~C~~~F 87 (140)
.|..|+..|
T Consensus 69 ~C~~CG~~F 77 (105)
T 2gmg_A 69 QCRKCGFVF 77 (105)
T ss_dssp BBTTTCCBC
T ss_pred ChhhCcCee
Confidence 577777776
No 107
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=44.62 E-value=69 Score=24.16 Aligned_cols=28 Identities=21% Similarity=0.498 Sum_probs=19.1
Q ss_pred ccccccccccc-----ccc---ccccccccCceEeC
Q psy1895 78 ITCRACDKEFT-----VTR---RRHHCRNCGEIFCN 105 (140)
Q Consensus 78 ~~C~~C~~~F~-----~~~---rkhhCr~CG~i~C~ 105 (140)
..|..|.-..+ -+. .-..|.+||+|.-.
T Consensus 199 ~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 199 QACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYA 234 (256)
T ss_dssp TBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEEC
T ss_pred CccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEe
Confidence 58999998765 111 23578888888753
No 108
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=44.04 E-value=11 Score=22.27 Aligned_cols=11 Identities=36% Similarity=0.893 Sum_probs=8.9
Q ss_pred ccccccccccc
Q psy1895 78 ITCRACDKEFT 88 (140)
Q Consensus 78 ~~C~~C~~~F~ 88 (140)
-.|..|++.|.
T Consensus 16 ~~C~~C~k~f~ 26 (77)
T 2ct1_A 16 YECYICHARFT 26 (77)
T ss_dssp EECTTTCCEES
T ss_pred eECCCcCchhC
Confidence 46888988886
No 109
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.03 E-value=8.9 Score=22.60 Aligned_cols=23 Identities=26% Similarity=0.657 Sum_probs=15.6
Q ss_pred ccccccccccccccccccccccCce
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEI 102 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i 102 (140)
..|+.|+.. .-.+.-.|+.||..
T Consensus 15 ~iCpkC~a~--~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGAT--NPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCE--ECTTCSSCSSSSSC
T ss_pred ccCCCCCCc--CCCCceecCCCCCc
Confidence 468888876 33555677777764
No 110
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=42.35 E-value=9.9 Score=23.05 Aligned_cols=10 Identities=40% Similarity=1.198 Sum_probs=6.0
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 5 ~C~~C~k~f~ 14 (88)
T 1llm_C 5 QCRICMRNFS 14 (88)
T ss_dssp ECTTTCCEES
T ss_pred cCCCCCCccC
Confidence 4666666664
No 111
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=42.19 E-value=14 Score=22.36 Aligned_cols=11 Identities=36% Similarity=0.915 Sum_probs=7.1
Q ss_pred ccccccccccc
Q psy1895 78 ITCRACDKEFT 88 (140)
Q Consensus 78 ~~C~~C~~~F~ 88 (140)
-.|..|++.|.
T Consensus 9 ~~C~~C~~~f~ 19 (96)
T 2dmd_A 9 HKCEVCGKCFS 19 (96)
T ss_dssp CCBTTTTBCCC
T ss_pred eECCCCCCccC
Confidence 35777777765
No 112
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=41.97 E-value=9.7 Score=20.32 Aligned_cols=11 Identities=36% Similarity=1.020 Sum_probs=8.6
Q ss_pred ccccccccccc
Q psy1895 78 ITCRACDKEFT 88 (140)
Q Consensus 78 ~~C~~C~~~F~ 88 (140)
-.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (48)
T 2epr_A 13 VACEICGKIFR 23 (48)
T ss_dssp EEETTTTEEES
T ss_pred eeCCCCCcccC
Confidence 46888888886
No 113
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=41.62 E-value=14 Score=21.85 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=15.9
Q ss_pred Cccccccccc-c-ccccccccccccCceE
Q psy1895 77 AITCRACDKE-F-TVTRRRHHCRNCGEIF 103 (140)
Q Consensus 77 ~~~C~~C~~~-F-~~~~rkhhCr~CG~i~ 103 (140)
...|+.|+.. | .....+++|..||...
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 4578888872 2 2223456677777653
No 114
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=41.44 E-value=13 Score=22.80 Aligned_cols=24 Identities=29% Similarity=0.757 Sum_probs=17.8
Q ss_pred cccccccccccccc-ccccccccCc
Q psy1895 78 ITCRACDKEFTVTR-RRHHCRNCGE 101 (140)
Q Consensus 78 ~~C~~C~~~F~~~~-rkhhCr~CG~ 101 (140)
-.|..|+..|.+-. ....|+.||.
T Consensus 22 Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 22 YLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp CBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred EECCCCCCeeecCCCCceECCCCCc
Confidence 47999999998643 3466888774
No 115
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=41.21 E-value=75 Score=23.34 Aligned_cols=47 Identities=4% Similarity=-0.082 Sum_probs=28.3
Q ss_pred CccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
.-.|++|...|.- -..-.||++||..|......- . ...|..|...+.
T Consensus 208 ~~~c~i~~~~~~d----Pv~~~~gh~f~~~~i~~~~~~---~--~~~cP~~~~~~~ 254 (281)
T 2c2l_A 208 YLCGKISFELMRE----PCITPSGITYDRKDIEEHLQR---V--GHFNPVTRSPLT 254 (281)
T ss_dssp TTBCTTTCSBCSS----EEECSSCCEEETTHHHHHHHH---T--CSSCTTTCCCCC
T ss_pred ccCCcCcCCHhcC----CeECCCCCEECHHHHHHHHHH---C--CCCCcCCCCCCc
Confidence 3468888876651 122359999999997654321 0 112666665553
No 116
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=40.30 E-value=10 Score=25.73 Aligned_cols=25 Identities=44% Similarity=1.084 Sum_probs=15.3
Q ss_pred cccccccccccc------------cccccccccCceE
Q psy1895 79 TCRACDKEFTVT------------RRRHHCRNCGEIF 103 (140)
Q Consensus 79 ~C~~C~~~F~~~------------~rkhhCr~CG~i~ 103 (140)
.|..|++.|... .+.+.|..||..|
T Consensus 52 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F 88 (133)
T 2lt7_A 52 PCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSF 88 (133)
T ss_dssp ECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEE
T ss_pred eCCccCeecccccchhhhccccCCCccccCCCCCCCc
Confidence 588888888621 1234566666665
No 117
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.18 E-value=12 Score=22.96 Aligned_cols=7 Identities=57% Similarity=1.811 Sum_probs=3.9
Q ss_pred ccccCce
Q psy1895 96 CRNCGEI 102 (140)
Q Consensus 96 Cr~CG~i 102 (140)
||.||..
T Consensus 20 CrRCG~~ 26 (62)
T 3j21_e 20 CRRCGRV 26 (62)
T ss_dssp CSSSCSB
T ss_pred ecccCcc
Confidence 5555544
No 118
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=39.62 E-value=9.8 Score=26.24 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=19.5
Q ss_pred ccccccccc-cc-cccccccccccCceEeCC
Q psy1895 78 ITCRACDKE-FT-VTRRRHHCRNCGEIFCNM 106 (140)
Q Consensus 78 ~~C~~C~~~-F~-~~~rkhhCr~CG~i~C~~ 106 (140)
..|+.|++. +. .-....+|+.||.+|=..
T Consensus 61 ytCPfCGk~~vKR~avGIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 61 HACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 91 (116)
T ss_dssp EECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred CcCCCCCCceeEecCceeEECCCCCCEEECC
Confidence 479999872 21 122357899999998554
No 119
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=39.17 E-value=14 Score=27.59 Aligned_cols=20 Identities=15% Similarity=0.441 Sum_probs=12.5
Q ss_pred ccCCccccCcCCc-ccccccc
Q psy1895 66 ATEAQWAKDKEAI-TCRACDK 85 (140)
Q Consensus 66 ~~~~~W~~~~~~~-~C~~C~~ 85 (140)
.....|.++-... .|..|+.
T Consensus 9 ~~~~~~~~~ln~~~~CPECGs 29 (197)
T 3k1f_M 9 KRAGRRGPNLNIVLTCPECKV 29 (197)
T ss_dssp ----CCSSCCCCCCCCTTTCC
T ss_pred CCccccccccccCeECcCCCC
Confidence 3446788776664 6999997
No 120
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=38.74 E-value=14 Score=24.02 Aligned_cols=26 Identities=23% Similarity=0.602 Sum_probs=19.5
Q ss_pred ccccc--cccccccccccccccccCceEeCC
Q psy1895 78 ITCRA--CDKEFTVTRRRHHCRNCGEIFCNM 106 (140)
Q Consensus 78 ~~C~~--C~~~F~~~~rkhhCr~CG~i~C~~ 106 (140)
..|.. |.+. .+ -...|+.||..||..
T Consensus 26 ~~C~~~~Ck~~-~~--l~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 26 YSCSFKGCTDV-EL--VAVICPYCEKNFCLR 53 (86)
T ss_dssp EECCSTTCCCE-ES--SCEECTTTCCEECGG
T ss_pred CCCCCcCCCCC-Cc--cceECCCCCcccccc
Confidence 46876 8876 22 356899999999974
No 121
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=38.35 E-value=11 Score=22.87 Aligned_cols=20 Identities=30% Similarity=0.996 Sum_probs=13.5
Q ss_pred Ccccccccccccccccccc-ccccC
Q psy1895 77 AITCRACDKEFTVTRRRHH-CRNCG 100 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhh-Cr~CG 100 (140)
...|..|+. +...|| |..||
T Consensus 30 l~~c~~cGe----~~~~H~vc~~CG 50 (60)
T 3v2d_5 30 LVPCPECKA----MKPPHTVCPECG 50 (60)
T ss_dssp CEECTTTCC----EECTTSCCTTTC
T ss_pred eeECCCCCC----eecceEEcCCCC
Confidence 457888887 344455 77887
No 122
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=38.33 E-value=12 Score=16.81 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=6.4
Q ss_pred ccccccCceE
Q psy1895 94 HHCRNCGEIF 103 (140)
Q Consensus 94 hhCr~CG~i~ 103 (140)
+.|..||+.|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 4566677665
No 123
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=38.21 E-value=9.3 Score=31.49 Aligned_cols=47 Identities=17% Similarity=0.478 Sum_probs=33.0
Q ss_pred ccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhhc
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVE 133 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~ 133 (140)
..|.+|...|.- ...-.||++||..|...+.. ...+.|..|...+..
T Consensus 333 ~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~-----~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDKD----VKIEPCGHLMCTSCLTSWQE-----SEGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBCC----EEEETTCCEECHHHHHHHHH-----HTCSBCTTTCCBCCE
T ss_pred CCCCccCcCCCC----eEEeCCCChhhHHHHHHHHh-----cCCCCCCCCCCccCC
Confidence 589999887742 33468999999999865432 134678888776543
No 124
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=38.10 E-value=6.4 Score=23.44 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=31.0
Q ss_pred CcCCccccccccccccccccccccccCce-EeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 74 DKEAITCRACDKEFTVTRRRHHCRNCGEI-FCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 74 ~~~~~~C~~C~~~F~~~~rkhhCr~CG~i-~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
..+...|.+|...+.-..-.| ..||++ +|..|...... ....|..|...+.
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~--~pCgH~~~C~~C~~~~~~------~~~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVH--GKTGHLMACFTCAKKLKK------RNKPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEE--TTEEEEEECHHHHHHHHH------TTCCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCCEEEEC--CCCCChhhHHHHHHHHHH------cCCcCCCcCcchh
Confidence 344568999988765321101 269999 89999875332 2235777765543
No 125
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=38.06 E-value=13 Score=21.66 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=8.3
Q ss_pred ccccccccccc
Q psy1895 78 ITCRACDKEFT 88 (140)
Q Consensus 78 ~~C~~C~~~F~ 88 (140)
-.|..|++.|.
T Consensus 30 ~~C~~C~~~f~ 40 (82)
T 2kmk_A 30 YPCQYCGKRFH 40 (82)
T ss_dssp EECSSSCCEES
T ss_pred eeCCcCChhhC
Confidence 36888888886
No 126
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=38.03 E-value=18 Score=18.70 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=8.6
Q ss_pred ccccccccccc
Q psy1895 78 ITCRACDKEFT 88 (140)
Q Consensus 78 ~~C~~C~~~F~ 88 (140)
-.|..|++.|.
T Consensus 11 ~~C~~C~k~f~ 21 (45)
T 2epq_A 11 YSCPVCGLRFK 21 (45)
T ss_dssp SEETTTTEECS
T ss_pred CcCCCCCcccC
Confidence 46888888886
No 127
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=37.56 E-value=13 Score=29.80 Aligned_cols=39 Identities=15% Similarity=0.441 Sum_probs=15.4
Q ss_pred ccCCccccCcCC-cccccccc-c--c--ccccccccccccCceEe
Q psy1895 66 ATEAQWAKDKEA-ITCRACDK-E--F--TVTRRRHHCRNCGEIFC 104 (140)
Q Consensus 66 ~~~~~W~~~~~~-~~C~~C~~-~--F--~~~~rkhhCr~CG~i~C 104 (140)
.+.+.|.++-.. ..|+.|+. + + ..-..-.-|..||.|+=
T Consensus 9 ~~~~~~~~~l~~~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~ 53 (345)
T 4bbr_M 9 KRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp -------------CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEE
T ss_pred CCccccCcccccCCcCCCCCCCCCceeEECCCCcEEeCCCCCCcc
Confidence 344678777664 36999996 2 1 22233444666666653
No 128
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=37.46 E-value=13 Score=22.20 Aligned_cols=11 Identities=36% Similarity=1.120 Sum_probs=8.1
Q ss_pred ccccccccccc
Q psy1895 78 ITCRACDKEFT 88 (140)
Q Consensus 78 ~~C~~C~~~F~ 88 (140)
-.|..|++.|.
T Consensus 35 ~~C~~C~~~f~ 45 (90)
T 1a1h_A 35 FQCRICMRNFS 45 (90)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 36888888776
No 129
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=37.22 E-value=16 Score=20.55 Aligned_cols=11 Identities=27% Similarity=1.023 Sum_probs=8.2
Q ss_pred ccccccccccc
Q psy1895 78 ITCRACDKEFT 88 (140)
Q Consensus 78 ~~C~~C~~~F~ 88 (140)
-.|..|++.|.
T Consensus 11 ~~C~~C~k~f~ 21 (66)
T 2drp_A 11 YRCKVCSRVYT 21 (66)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCcchhC
Confidence 35888888886
No 130
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=36.79 E-value=19 Score=22.43 Aligned_cols=27 Identities=30% Similarity=0.947 Sum_probs=20.7
Q ss_pred cccccccccccccccccccccc-CceEeCCCCC
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNC-GEIFCNMCSD 109 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~C-G~i~C~~Cs~ 109 (140)
.=|.+|+..=+ ..|.-| |.+||..|-.
T Consensus 9 pWC~ICneDAt-----lrC~gCdgDLYC~rC~r 36 (67)
T 2d8v_A 9 PWCCICNEDAT-----LRCAGCDGDLYCARCFR 36 (67)
T ss_dssp SSCTTTCSCCC-----EEETTTTSEEECSSHHH
T ss_pred CeeEEeCCCCe-----EEecCCCCceehHHHHH
Confidence 34888988522 569999 9999999954
No 131
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=36.58 E-value=20 Score=21.67 Aligned_cols=10 Identities=40% Similarity=1.019 Sum_probs=5.9
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 9 ~C~~C~~~f~ 18 (95)
T 2yt9_A 9 ACEICGKIFR 18 (95)
T ss_dssp ECSSSCCEES
T ss_pred ECCCCCCccC
Confidence 4666666664
No 132
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=35.77 E-value=23 Score=22.31 Aligned_cols=11 Identities=27% Similarity=0.782 Sum_probs=8.4
Q ss_pred ccccccccccc
Q psy1895 78 ITCRACDKEFT 88 (140)
Q Consensus 78 ~~C~~C~~~F~ 88 (140)
-.|..|++.|.
T Consensus 36 ~~C~~C~~~f~ 46 (124)
T 2dlq_A 36 FECPKCGKCYF 46 (124)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCchhc
Confidence 46888888886
No 133
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.49 E-value=17 Score=22.95 Aligned_cols=9 Identities=22% Similarity=0.150 Sum_probs=6.6
Q ss_pred ccccccccc
Q psy1895 79 TCRACDKEF 87 (140)
Q Consensus 79 ~C~~C~~~F 87 (140)
.|..|++.|
T Consensus 52 ~C~~C~~~f 60 (115)
T 2dmi_A 52 TDNNNPKRW 60 (115)
T ss_dssp CCCCCCSCC
T ss_pred cCCCCCccc
Confidence 377787777
No 134
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=35.47 E-value=25 Score=21.72 Aligned_cols=12 Identities=33% Similarity=1.013 Sum_probs=8.6
Q ss_pred Cccccccccccc
Q psy1895 77 AITCRACDKEFT 88 (140)
Q Consensus 77 ~~~C~~C~~~F~ 88 (140)
.-.|..|++.|.
T Consensus 17 ~~~C~~C~~~f~ 28 (106)
T 2ee8_A 17 EFICKFCGRHFT 28 (106)
T ss_dssp CCBCSSSCCBCS
T ss_pred CeECCCCCCccC
Confidence 346888888876
No 135
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.42 E-value=14 Score=16.64 Aligned_cols=11 Identities=36% Similarity=0.957 Sum_probs=7.2
Q ss_pred cccccccCceE
Q psy1895 93 RHHCRNCGEIF 103 (140)
Q Consensus 93 khhCr~CG~i~ 103 (140)
.+.|..||..|
T Consensus 3 ~~~C~~C~~~f 13 (30)
T 2m0d_A 3 PYQCDYCGRSF 13 (30)
T ss_dssp CEECTTTCCEE
T ss_pred CccCCCCCccc
Confidence 35577777766
No 136
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=35.39 E-value=24 Score=23.69 Aligned_cols=26 Identities=19% Similarity=0.583 Sum_probs=20.2
Q ss_pred CccccccccccccccccccccccCceEeCC
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEIFCNM 106 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~ 106 (140)
...|..|...=+++ -|-.||.|.|++
T Consensus 24 ~~~C~~C~~~~~~W----~CL~CG~vgCgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQENW----VCLSCYQVYCGR 49 (109)
T ss_dssp TCCCTTTCCCSSEE----EETTTCCEEECT
T ss_pred CCcCccccCCCCee----eeeecCccccCC
Confidence 45699999865543 399999999975
No 137
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=35.37 E-value=13 Score=16.55 Aligned_cols=10 Identities=30% Similarity=1.115 Sum_probs=8.2
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 3 ~C~~C~k~f~ 12 (27)
T 1znf_A 3 KCGLCERSFV 12 (27)
T ss_dssp BCSSSCCBCS
T ss_pred cCCCCCCcCC
Confidence 5888888887
No 138
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=34.83 E-value=14 Score=25.87 Aligned_cols=14 Identities=29% Similarity=0.909 Sum_probs=9.4
Q ss_pred cccccccccccccc
Q psy1895 78 ITCRACDKEFTVTR 91 (140)
Q Consensus 78 ~~C~~C~~~F~~~~ 91 (140)
-.|..|+..|..-.
T Consensus 71 ~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 71 FKCRNCNYEWKLKE 84 (139)
T ss_dssp EEETTTCCEEEGGG
T ss_pred EECCCCCCEEeccc
Confidence 35777777777544
No 139
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=34.78 E-value=19 Score=28.61 Aligned_cols=34 Identities=18% Similarity=0.445 Sum_probs=18.9
Q ss_pred ccccCcC-Cccccccccc-----cccccccccccccCceE
Q psy1895 70 QWAKDKE-AITCRACDKE-----FTVTRRRHHCRNCGEIF 103 (140)
Q Consensus 70 ~W~~~~~-~~~C~~C~~~-----F~~~~rkhhCr~CG~i~ 103 (140)
.|.|+-. ...|+.|+.. +..-..-.-|..||.|+
T Consensus 13 ~~~~~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 13 RRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp ----CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred ccCccccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 3777766 5679999874 22223344577777775
No 140
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.62 E-value=15 Score=23.74 Aligned_cols=26 Identities=31% Similarity=0.919 Sum_probs=18.2
Q ss_pred ccccccccccccccc----cccccccCceEeC
Q psy1895 78 ITCRACDKEFTVTRR----RHHCRNCGEIFCN 105 (140)
Q Consensus 78 ~~C~~C~~~F~~~~r----khhCr~CG~i~C~ 105 (140)
..|+.|++. . +.| .-+|+.||..|=.
T Consensus 36 y~CpfCGk~-~-vkR~a~GIW~C~kCg~~~AG 65 (83)
T 3j21_i 36 HTCPVCGRK-A-VKRISTGIWQCQKCGATFAG 65 (83)
T ss_dssp BCCSSSCSS-C-EEEEETTEEEETTTCCEEEC
T ss_pred cCCCCCCCc-e-eEecCcCeEEcCCCCCEEeC
Confidence 369999985 3 333 3479999988754
No 141
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=34.12 E-value=12 Score=24.24 Aligned_cols=26 Identities=23% Similarity=0.625 Sum_probs=16.8
Q ss_pred ccccccccccccc----------cccccccccCceE
Q psy1895 78 ITCRACDKEFTVT----------RRRHHCRNCGEIF 103 (140)
Q Consensus 78 ~~C~~C~~~F~~~----------~rkhhCr~CG~i~ 103 (140)
-.|..|++.|... .+.+.|..||..|
T Consensus 75 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f 110 (129)
T 2wbt_A 75 FVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEF 110 (129)
T ss_dssp EECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBC
T ss_pred eECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCccc
Confidence 3699999999721 2334566666655
No 142
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.10 E-value=83 Score=20.35 Aligned_cols=12 Identities=33% Similarity=0.786 Sum_probs=8.3
Q ss_pred Cccccccccccc
Q psy1895 77 AITCRACDKEFT 88 (140)
Q Consensus 77 ~~~C~~C~~~F~ 88 (140)
...|+.|+.+.+
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 346888887654
No 143
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=34.04 E-value=16 Score=16.46 Aligned_cols=10 Identities=40% Similarity=1.019 Sum_probs=6.5
Q ss_pred ccccccCceE
Q psy1895 94 HHCRNCGEIF 103 (140)
Q Consensus 94 hhCr~CG~i~ 103 (140)
+.|..||+.|
T Consensus 4 ~~C~~C~k~f 13 (28)
T 2kvf_A 4 YSCSVCGKRF 13 (28)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCCccc
Confidence 4566777665
No 144
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=33.93 E-value=8.6 Score=25.18 Aligned_cols=18 Identities=33% Similarity=0.816 Sum_probs=14.4
Q ss_pred CCccccccccccccccccc
Q psy1895 76 EAITCRACDKEFTVTRRRH 94 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkh 94 (140)
+.-.|..|+++|..+. +|
T Consensus 20 d~iiClecGK~fK~Lk-RH 37 (87)
T 2jsp_A 20 DHIVCLECGGSFKSLK-RH 37 (87)
T ss_dssp SCEECTBTCCEESBHH-HH
T ss_pred CceEecccchhhHHHH-HH
Confidence 3458999999999887 44
No 145
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=33.82 E-value=14 Score=16.64 Aligned_cols=10 Identities=30% Similarity=1.125 Sum_probs=8.4
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 1ard_A 4 VCEVCTRAFA 13 (29)
T ss_dssp BCTTTCCBCS
T ss_pred ECCCCCcccC
Confidence 5888999887
No 146
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=33.75 E-value=12 Score=26.23 Aligned_cols=33 Identities=21% Similarity=0.578 Sum_probs=23.7
Q ss_pred CCccccccccccccccccccccccCceEeCCCCCCee
Q psy1895 76 EAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKM 112 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~ 112 (140)
+.-.|.+|...|.-- ..+ .||++||..|.....
T Consensus 17 ~~~~C~IC~~~~~~p---v~~-~CgH~fC~~Ci~~~~ 49 (170)
T 3hcs_A 17 SKYECPICLMALREA---VQT-PCGHRFCKACIIKSI 49 (170)
T ss_dssp GGGBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHH
T ss_pred CCCCCCCCChhhcCc---EEC-CCCCHHHHHHHHHHH
Confidence 345799998877532 233 699999999987643
No 147
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=33.60 E-value=19 Score=22.73 Aligned_cols=26 Identities=27% Similarity=0.669 Sum_probs=17.2
Q ss_pred ccccccccccccccc----cccccccCceEeC
Q psy1895 78 ITCRACDKEFTVTRR----RHHCRNCGEIFCN 105 (140)
Q Consensus 78 ~~C~~C~~~F~~~~r----khhCr~CG~i~C~ 105 (140)
..|+.|++. . +.| .-+|+.||..|=.
T Consensus 27 y~C~fCgk~-~-vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 27 YDCSFCGKK-T-VKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp BCCSSCCSS-C-BSBCSSSCBCCSSSCCCCCC
T ss_pred ccCCCCCCc-e-eEecCCCeEECCCCCCEEeC
Confidence 369999874 3 333 3478888887743
No 148
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=33.60 E-value=16 Score=16.44 Aligned_cols=10 Identities=30% Similarity=0.876 Sum_probs=6.5
Q ss_pred ccccccCceE
Q psy1895 94 HHCRNCGEIF 103 (140)
Q Consensus 94 hhCr~CG~i~ 103 (140)
+.|..||..|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 1rik_A 3 FACPECPKRF 12 (29)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCCCchh
Confidence 4566777766
No 149
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=33.52 E-value=18 Score=23.03 Aligned_cols=32 Identities=34% Similarity=0.879 Sum_probs=24.2
Q ss_pred ccccccccccccccccccccccCc----eEeCCCCCC
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGE----IFCNMCSDN 110 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~----i~C~~Cs~~ 110 (140)
-.|..|+. ..+...|++|..|.. -+|..|-..
T Consensus 22 ~~Cd~C~~-~pI~G~RykC~~C~d~~~yDLC~~C~~~ 57 (82)
T 2fc7_A 22 FKCDNCGI-EPIQGVRWHCQDCPPEMSLDFCDSCSDC 57 (82)
T ss_dssp CCCSSSCC-SSEESCEEEESSSCSSSCCEEEGGGTTC
T ss_pred CCCCCCCC-CcceeceEECCcCCCCcceecHHHHHhC
Confidence 36888876 345668899999976 699999654
No 150
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=33.20 E-value=18 Score=23.92 Aligned_cols=7 Identities=57% Similarity=1.664 Sum_probs=4.3
Q ss_pred ccccCce
Q psy1895 96 CRNCGEI 102 (140)
Q Consensus 96 Cr~CG~i 102 (140)
||.||..
T Consensus 19 CrRCG~~ 25 (94)
T 4a18_A 19 CRRCGKA 25 (94)
T ss_dssp CTTTCSE
T ss_pred ecCcCch
Confidence 6666654
No 151
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.18 E-value=10 Score=23.06 Aligned_cols=41 Identities=22% Similarity=0.606 Sum_probs=28.0
Q ss_pred cccccccccccccccccccccCce-EeCCCCCCeeeCCCCCCCcccCcccHHHhhc
Q psy1895 79 TCRACDKEFTVTRRRHHCRNCGEI-FCNMCSDNKMALPSAAKPVRVCDECNVKLVE 133 (140)
Q Consensus 79 ~C~~C~~~F~~~~rkhhCr~CG~i-~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~ 133 (140)
.|.+|...|.-.. --.||+. ||..|... .+.|..|...+..
T Consensus 27 ~C~IC~~~~~~~~----~~pCgH~~~C~~C~~~----------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 27 LCKICMDRNIAIV----FVPCGHLVTCKQCAEA----------VDKCPMCYTVITF 68 (75)
T ss_dssp SCSSSCSSCCCBC----CSSSCCCCBCHHHHHH----------CSBCTTTCCBCCC
T ss_pred CCCcCCCCCCCEE----EecCCCHHHHHHHhhC----------CCCCccCCceecC
Confidence 5999988765321 2479999 99999742 2567777665543
No 152
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=33.08 E-value=15 Score=22.10 Aligned_cols=23 Identities=30% Similarity=0.689 Sum_probs=16.6
Q ss_pred CccccccccccccccccccccccCc
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGE 101 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~ 101 (140)
-..|..|++... .+-.+||.||.
T Consensus 19 k~ICrkC~ARnp--~~A~~CRKCg~ 41 (56)
T 2ayj_A 19 KKVCRKCGALNP--IRATKCRRCHS 41 (56)
T ss_dssp CEEETTTCCEEC--TTCSSCTTTCC
T ss_pred hhhhccccCcCC--cccccccCCCC
Confidence 357888888665 45678998873
No 153
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=33.07 E-value=15 Score=21.06 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=10.7
Q ss_pred ccccccccCceEe
Q psy1895 92 RRHHCRNCGEIFC 104 (140)
Q Consensus 92 rkhhCr~CG~i~C 104 (140)
.++.|..||.|+=
T Consensus 3 ~~y~C~vCGyvyd 15 (46)
T 6rxn_A 3 QKYVCNVCGYEYD 15 (46)
T ss_dssp CCEEETTTCCEEC
T ss_pred CEEECCCCCeEEe
Confidence 5688999999873
No 154
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=32.94 E-value=15 Score=22.98 Aligned_cols=23 Identities=22% Similarity=0.768 Sum_probs=13.1
Q ss_pred cccccccccc--cccccccccccCceE
Q psy1895 79 TCRACDKEFT--VTRRRHHCRNCGEIF 103 (140)
Q Consensus 79 ~C~~C~~~F~--~~~rkhhCr~CG~i~ 103 (140)
.|+ |+.-+- ...+.|.|. ||..+
T Consensus 6 ~C~-C~~~~~~~~~~kT~~C~-CG~~~ 30 (71)
T 1gh9_A 6 RCD-CGRALYSREGAKTRKCV-CGRTV 30 (71)
T ss_dssp EET-TSCCEEEETTCSEEEET-TTEEE
T ss_pred ECC-CCCEEEEcCCCcEEECC-CCCee
Confidence 466 666432 234456676 77764
No 155
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=32.64 E-value=19 Score=23.73 Aligned_cols=26 Identities=27% Similarity=0.700 Sum_probs=18.4
Q ss_pred cccccccccccccc----cccccccCceEeCC
Q psy1895 79 TCRACDKEFTVTRR----RHHCRNCGEIFCNM 106 (140)
Q Consensus 79 ~C~~C~~~F~~~~r----khhCr~CG~i~C~~ 106 (140)
.|+.|++. . +.| .-+|+.||..|=..
T Consensus 38 ~CpfCgk~-~-vkR~a~GIW~C~~Cg~~~AGG 67 (92)
T 3iz5_m 38 FCEFCGKF-A-VKRKAVGIWGCKDCGKVKAGG 67 (92)
T ss_dssp CCTTTCSS-C-BEEEETTEEECSSSCCEEECC
T ss_pred cCcccCCC-e-eEecCcceEEcCCCCCEEeCC
Confidence 69999985 3 333 34799999888543
No 156
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.95 E-value=21 Score=22.30 Aligned_cols=10 Identities=40% Similarity=1.085 Sum_probs=6.4
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 39 ~C~~C~~~f~ 48 (110)
T 2csh_A 39 GCGVCGKKFK 48 (110)
T ss_dssp ECTTTSCEES
T ss_pred cCCCCCcccC
Confidence 5666666665
No 157
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.87 E-value=18 Score=16.15 Aligned_cols=10 Identities=50% Similarity=1.338 Sum_probs=6.1
Q ss_pred ccccccCceE
Q psy1895 94 HHCRNCGEIF 103 (140)
Q Consensus 94 hhCr~CG~i~ 103 (140)
+.|..||..|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2m0f_A 3 LKCRECGKQF 12 (29)
T ss_dssp EECTTTSCEE
T ss_pred ccCCCCCCcc
Confidence 4466666665
No 158
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=31.74 E-value=28 Score=20.56 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=13.0
Q ss_pred cccccccc-cccc--ccccccccccCceE
Q psy1895 78 ITCRACDK-EFTV--TRRRHHCRNCGEIF 103 (140)
Q Consensus 78 ~~C~~C~~-~F~~--~~rkhhCr~CG~i~ 103 (140)
..|+.|+. .+-. -..-..|..||.|+
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCEE
Confidence 46888876 3221 12233455555554
No 159
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.71 E-value=22 Score=20.94 Aligned_cols=11 Identities=45% Similarity=1.105 Sum_probs=8.5
Q ss_pred ccccccccccc
Q psy1895 78 ITCRACDKEFT 88 (140)
Q Consensus 78 ~~C~~C~~~F~ 88 (140)
-.|..|++.|.
T Consensus 16 ~~C~~C~~~f~ 26 (86)
T 1x6h_A 16 YACSHCDKTFR 26 (86)
T ss_dssp EECSSSSCEES
T ss_pred CcCCCCCCccC
Confidence 46888888886
No 160
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.63 E-value=16 Score=16.30 Aligned_cols=10 Identities=50% Similarity=1.265 Sum_probs=7.9
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 2m0e_A 4 KCPHCDKKFN 13 (29)
T ss_dssp CCSSCCCCCC
T ss_pred cCCCCCcccC
Confidence 5888888886
No 161
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=37.84 E-value=9.9 Score=17.01 Aligned_cols=10 Identities=40% Similarity=1.115 Sum_probs=7.9
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 4 ~C~~C~k~f~ 13 (26)
T 2lvu_A 4 VCERCGKRFV 13 (26)
Confidence 5888888886
No 162
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.43 E-value=16 Score=16.58 Aligned_cols=10 Identities=20% Similarity=0.374 Sum_probs=6.4
Q ss_pred ccccccCceE
Q psy1895 94 HHCRNCGEIF 103 (140)
Q Consensus 94 hhCr~CG~i~ 103 (140)
+.|..||+.|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvg_A 4 YRCPLCRAGC 13 (27)
T ss_dssp EEETTTTEEE
T ss_pred cCCCCCCccc
Confidence 4566677665
No 163
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=31.41 E-value=15 Score=21.43 Aligned_cols=13 Identities=31% Similarity=0.876 Sum_probs=10.4
Q ss_pred cccccccCceEeC
Q psy1895 93 RHHCRNCGEIFCN 105 (140)
Q Consensus 93 khhCr~CG~i~C~ 105 (140)
++.|+.||.|+=.
T Consensus 2 ~~~C~~CGyvYd~ 14 (52)
T 1yk4_A 2 KLSCKICGYIYDE 14 (52)
T ss_dssp EEEESSSSCEEET
T ss_pred cEEeCCCCeEECC
Confidence 5789999999743
No 164
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=31.34 E-value=21 Score=22.33 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=5.3
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 44 ~C~~C~~~f~ 53 (107)
T 1wjp_A 44 VCPYCSLRFF 53 (107)
T ss_dssp CCTTTCCCBS
T ss_pred cCCCCCCccC
Confidence 4555555554
No 165
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=31.15 E-value=22 Score=23.28 Aligned_cols=31 Identities=26% Similarity=0.706 Sum_probs=22.7
Q ss_pred ccccccccccccccccccccccCceEeCCCCCC
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDN 110 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~ 110 (140)
..|.+|.. |+ ..-+.-||.||++|=..|...
T Consensus 16 ~~C~VC~~-~t-~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 16 EMCDVCEV-WT-AESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CCCTTTCC-CC-SSCCSSCSSSSSCCCHHHHHH
T ss_pred cccCcccc-cc-ccceeccccccccccHhhccc
Confidence 37888875 33 345678999999987777665
No 166
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=30.90 E-value=17 Score=16.57 Aligned_cols=10 Identities=40% Similarity=1.192 Sum_probs=8.3
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 4 ~C~~C~k~f~ 13 (30)
T 1paa_A 4 ACGLCNRAFT 13 (30)
T ss_dssp BCTTTCCBCS
T ss_pred CCcccCcccC
Confidence 5888999887
No 167
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=30.82 E-value=25 Score=20.16 Aligned_cols=29 Identities=28% Similarity=0.788 Sum_probs=17.2
Q ss_pred cCCcccc--ccccccccc------------cccccccccCceE
Q psy1895 75 KEAITCR--ACDKEFTVT------------RRRHHCRNCGEIF 103 (140)
Q Consensus 75 ~~~~~C~--~C~~~F~~~------------~rkhhCr~CG~i~ 103 (140)
...-.|. .|++.|... .+.+.|..||..|
T Consensus 17 ~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 59 (73)
T 1f2i_G 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59 (73)
T ss_dssp CCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred CCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchh
Confidence 3345786 599988621 2234566666655
No 168
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.24 E-value=17 Score=21.16 Aligned_cols=11 Identities=36% Similarity=1.078 Sum_probs=8.1
Q ss_pred ccccc--cccccc
Q psy1895 78 ITCRA--CDKEFT 88 (140)
Q Consensus 78 ~~C~~--C~~~F~ 88 (140)
-.|.. |++.|.
T Consensus 39 ~~C~~~~C~k~f~ 51 (79)
T 2dlk_A 39 FSCPEPACGKSFN 51 (79)
T ss_dssp EECSCTTTCCEES
T ss_pred eECCCCCCcCccC
Confidence 36777 888886
No 169
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.13 E-value=82 Score=18.65 Aligned_cols=16 Identities=6% Similarity=-0.076 Sum_probs=11.3
Q ss_pred CcccCcccHHHhhccc
Q psy1895 120 PVRVCDECNVKLVEKL 135 (140)
Q Consensus 120 ~~RVC~~C~~~l~~~~ 135 (140)
-.-.|..||..+....
T Consensus 52 ~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 52 SSIWHPACRQAARTED 67 (73)
T ss_dssp TEEECTTHHHHTSSSS
T ss_pred CEEEChHHChHhhccc
Confidence 3467999998876543
No 170
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=29.54 E-value=17 Score=24.01 Aligned_cols=7 Identities=43% Similarity=1.232 Sum_probs=4.3
Q ss_pred ccccCce
Q psy1895 96 CRNCGEI 102 (140)
Q Consensus 96 Cr~CG~i 102 (140)
||.||..
T Consensus 19 CrRCG~~ 25 (94)
T 3iz5_l 19 CVRCGRR 25 (94)
T ss_dssp CTTTCSE
T ss_pred ecCcCch
Confidence 6666654
No 171
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=29.48 E-value=13 Score=24.96 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=23.5
Q ss_pred ccccccccccccccccccccccCceEeCCCCCC
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDN 110 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~ 110 (140)
..|..|+.+|....|-. .|.++||-.|...
T Consensus 2 hfC~~C~~Pi~iygRmI---PCkHvFCydCa~~ 31 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMI---PCKHVFCYDCAIL 31 (101)
T ss_dssp CBCTTTCSBCSEEEEEE---TTCCEEEHHHHHH
T ss_pred eecCccCCCeEEEeeec---cccccHHHHHHHH
Confidence 46899999999877765 5667999999743
No 172
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=29.34 E-value=24 Score=23.31 Aligned_cols=27 Identities=26% Similarity=0.602 Sum_probs=18.4
Q ss_pred ccccccccccccccc----cccccccCceEeCC
Q psy1895 78 ITCRACDKEFTVTRR----RHHCRNCGEIFCNM 106 (140)
Q Consensus 78 ~~C~~C~~~F~~~~r----khhCr~CG~i~C~~ 106 (140)
..|+.|++. . +.| .-+|+.||..|=..
T Consensus 37 y~CpfCgk~-~-vkR~a~GIW~C~~C~~~~AGG 67 (92)
T 3izc_m 37 YDCSFCGKK-T-VKRGAAGIWTCSCCKKTVAGG 67 (92)
T ss_dssp CCCSSSCSS-C-CEEEETTEEECTTTCCEEECC
T ss_pred CcCCCCCCc-e-eeecccceEEcCCCCCEEeCC
Confidence 369999974 3 334 34799999888543
No 173
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.85 E-value=22 Score=17.21 Aligned_cols=12 Identities=25% Similarity=0.932 Sum_probs=7.8
Q ss_pred ccccccccCceE
Q psy1895 92 RRHHCRNCGEIF 103 (140)
Q Consensus 92 rkhhCr~CG~i~ 103 (140)
+.+.|..||..|
T Consensus 8 k~~~C~~C~k~f 19 (36)
T 2els_A 8 KIFTCEYCNKVF 19 (36)
T ss_dssp CCEECTTTCCEE
T ss_pred CCEECCCCCcee
Confidence 345677777766
No 174
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=28.59 E-value=19 Score=16.13 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=8.6
Q ss_pred ccccccccccc
Q psy1895 79 TCRACDKEFTV 89 (140)
Q Consensus 79 ~C~~C~~~F~~ 89 (140)
.|..|++.|..
T Consensus 4 ~C~~C~k~f~~ 14 (30)
T 1klr_A 4 QCQYCEFRSAD 14 (30)
T ss_dssp CCSSSSCCCSC
T ss_pred cCCCCCCccCC
Confidence 58888888863
No 175
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=28.50 E-value=5.2 Score=23.82 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=8.3
Q ss_pred CCCCCCccchhhhHHHhhhhhhh
Q psy1895 1 MTSGGLKRSFDDHVKMNKIAEHV 23 (140)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (140)
|+++|+.+-|+|+..--|++|..
T Consensus 10 ~ssaGLvryy~ee~~giKi~P~~ 32 (53)
T 1rh5_C 10 ATSAGLIRYMDETFSKIRVKPEH 32 (53)
T ss_dssp -----------CCCCSCCCCHHH
T ss_pred cccccchhhhhccCCccccCCee
Confidence 57899999999987766766653
No 176
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=28.19 E-value=91 Score=18.00 Aligned_cols=52 Identities=23% Similarity=0.600 Sum_probs=32.6
Q ss_pred CccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhhcc
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVEK 134 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~~ 134 (140)
...|.+|+.. + .-..|-.|...|=..|... +++......-.|..|......+
T Consensus 5 ~~~C~vC~~~-g---~ll~Cd~C~~~fH~~Cl~p--pl~~~p~g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 5 EDFCSVCRKS-G---QLLMCDTCSRVYHLDCLDP--PLKTIPKGMWICPRCQDQMLKK 56 (60)
T ss_dssp CSSCTTTCCC-S---SCEECSSSSCEECGGGSSS--CCSSCCCSCCCCHHHHHHHHHT
T ss_pred CCCCcCCCCC-C---cEEEcCCCCcCEECCcCCC--CcCCCCCCceEChhccChhhch
Confidence 3579999874 2 3355777777776667653 2222223467899998776543
No 177
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.11 E-value=24 Score=21.78 Aligned_cols=14 Identities=14% Similarity=0.653 Sum_probs=10.2
Q ss_pred cccccccccccccc
Q psy1895 78 ITCRACDKEFTVTR 91 (140)
Q Consensus 78 ~~C~~C~~~F~~~~ 91 (140)
-.|+.|..++.+..
T Consensus 9 L~CP~ck~~L~~~~ 22 (68)
T 2hf1_A 9 LVCPLCKGPLVFDK 22 (68)
T ss_dssp CBCTTTCCBCEEET
T ss_pred eECCCCCCcCeEeC
Confidence 47999998776543
No 178
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.06 E-value=24 Score=21.75 Aligned_cols=26 Identities=8% Similarity=0.289 Sum_probs=17.0
Q ss_pred CccccccccccccccccccccccCceEeCCCC
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEIFCNMCS 108 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs 108 (140)
.-.|+.|..++.+-. ..|..+|..|.
T Consensus 8 iL~CP~ck~~L~~~~------~~~~LiC~~cg 33 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQ------DKQELWSRQAK 33 (68)
T ss_dssp CCBCSSSCCBCEEET------TTTEEEETTTT
T ss_pred heECCCCCCcCeEeC------CCCEEEcCCCC
Confidence 347999998776543 23666666664
No 179
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth factor complex; NMR {Marsupenaeus japonicus} SCOP: a.163.1.1
Probab=27.48 E-value=10 Score=24.25 Aligned_cols=15 Identities=40% Similarity=0.824 Sum_probs=11.9
Q ss_pred CCCcccCcccHHHhh
Q psy1895 118 AKPVRVCDECNVKLV 132 (140)
Q Consensus 118 ~~~~RVC~~C~~~l~ 132 (140)
.+-.|||+.||...-
T Consensus 19 ~kldrVCdDCyNLyR 33 (78)
T 1j0t_A 19 KKVVRVCEDCTNIFR 33 (78)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 355799999999864
No 180
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.45 E-value=37 Score=20.24 Aligned_cols=22 Identities=23% Similarity=0.819 Sum_probs=18.0
Q ss_pred cccccccccccccccccccccCceEeC
Q psy1895 79 TCRACDKEFTVTRRRHHCRNCGEIFCN 105 (140)
Q Consensus 79 ~C~~C~~~F~~~~rkhhCr~CG~i~C~ 105 (140)
.|.+|+. ..++.|..|+.-+|+
T Consensus 14 ~C~vC~~-----~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 14 VCVICLE-----KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCTTTCS-----CCSEECTTTCCEESS
T ss_pred ccCcCcC-----CCeeeCCCCCCCeeC
Confidence 6888987 346889999999987
No 181
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=27.40 E-value=20 Score=17.25 Aligned_cols=10 Identities=40% Similarity=1.065 Sum_probs=8.5
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 4 ~C~~C~k~F~ 13 (33)
T 1rim_A 4 ACPECPKRFM 13 (33)
T ss_dssp CCSSSCCCCS
T ss_pred cCCCCCchhC
Confidence 5888999887
No 182
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=27.16 E-value=22 Score=23.44 Aligned_cols=23 Identities=30% Similarity=0.872 Sum_probs=15.5
Q ss_pred cccccccccccccc--cccccccCce
Q psy1895 79 TCRACDKEFTVTRR--RHHCRNCGEI 102 (140)
Q Consensus 79 ~C~~C~~~F~~~~r--khhCr~CG~i 102 (140)
.|. |+.....+.| .++|++||..
T Consensus 50 kC~-C~~Rt~sl~r~P~~~C~~Cg~~ 74 (92)
T 2kwq_A 50 KCP-CGNRTISLDRLPKKHCSTCGLF 74 (92)
T ss_dssp ECT-TSCEEEESSSSCCSCCTTTCSC
T ss_pred ECC-CCCceeEeeeCCCCCCCCCCCC
Confidence 575 7776554433 6688888875
No 183
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=27.11 E-value=20 Score=22.87 Aligned_cols=32 Identities=22% Similarity=0.734 Sum_probs=21.9
Q ss_pred ccccccccccccccccccccccCceEeCCCCCC
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDN 110 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~ 110 (140)
..|.+|...|. ...-..|-.||..||..|...
T Consensus 4 ~~C~~C~~~~~-~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPA-QDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSC-CBCCEEETTTTEEECHHHHHH
T ss_pred CCCcCCCCCCC-CCceEECCcCChHHhHHHCHH
Confidence 36888886431 123356889999999988763
No 184
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=27.10 E-value=21 Score=17.38 Aligned_cols=12 Identities=33% Similarity=1.024 Sum_probs=9.9
Q ss_pred cccccccccccc
Q psy1895 78 ITCRACDKEFTV 89 (140)
Q Consensus 78 ~~C~~C~~~F~~ 89 (140)
-.|..|++.|..
T Consensus 12 ~~C~~C~k~f~~ 23 (37)
T 1p7a_A 12 FQCPDCDRSFSR 23 (37)
T ss_dssp BCCTTTCCCBSS
T ss_pred ccCCCCCcccCc
Confidence 479999999973
No 185
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=26.60 E-value=26 Score=24.89 Aligned_cols=31 Identities=23% Similarity=0.795 Sum_probs=20.0
Q ss_pred CccccccccccccccccccccccCc----eEeCCCCCC
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGE----IFCNMCSDN 110 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~----i~C~~Cs~~ 110 (140)
...|..|++.+++- -.|.+||. .||+.|--+
T Consensus 58 ~vlCg~C~~~q~~~---~~C~~Cg~~f~~Y~C~~C~l~ 92 (143)
T 2dkt_A 58 EVQCINCEKLQHAQ---QTCEDCSTLFGEYYCSICHLF 92 (143)
T ss_dssp CEEESSSCCEECSC---SBCSSSCCBSCSEECSSSCCE
T ss_pred eeeecccCcccccc---CcCCCCCccceeeEeceeecc
Confidence 45778888777653 36777774 367777443
No 186
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.53 E-value=21 Score=21.12 Aligned_cols=14 Identities=36% Similarity=0.859 Sum_probs=11.0
Q ss_pred ccccccccCceEeC
Q psy1895 92 RRHHCRNCGEIFCN 105 (140)
Q Consensus 92 rkhhCr~CG~i~C~ 105 (140)
.++.|+.||.|+=.
T Consensus 2 ~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 2 RKWQCVVCGFIYDE 15 (55)
T ss_dssp CEEEETTTCCEEET
T ss_pred CcEEeCCCCeEECC
Confidence 46789999999843
No 187
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.24 E-value=14 Score=16.84 Aligned_cols=10 Identities=50% Similarity=1.102 Sum_probs=8.0
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 2lvt_A 4 QCVMCGKAFT 13 (29)
Confidence 5888888886
No 188
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=26.10 E-value=18 Score=21.09 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=10.5
Q ss_pred ccccccccCceEe
Q psy1895 92 RRHHCRNCGEIFC 104 (140)
Q Consensus 92 rkhhCr~CG~i~C 104 (140)
.++.|+.||.|+=
T Consensus 2 ~~y~C~~CGyvYd 14 (52)
T 1e8j_A 2 DIYVCTVCGYEYD 14 (52)
T ss_dssp CCEECSSSCCCCC
T ss_pred CcEEeCCCCeEEc
Confidence 4678999999873
No 189
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=25.86 E-value=29 Score=21.44 Aligned_cols=13 Identities=15% Similarity=0.744 Sum_probs=9.8
Q ss_pred ccccccccccccc
Q psy1895 78 ITCRACDKEFTVT 90 (140)
Q Consensus 78 ~~C~~C~~~F~~~ 90 (140)
-.|+.|..+..+-
T Consensus 9 L~CP~ck~~L~~~ 21 (69)
T 2pk7_A 9 LACPICKGPLKLS 21 (69)
T ss_dssp CCCTTTCCCCEEC
T ss_pred eeCCCCCCcCeEe
Confidence 4799999887654
No 190
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.68 E-value=26 Score=16.57 Aligned_cols=11 Identities=27% Similarity=0.482 Sum_probs=7.2
Q ss_pred cccccccCceE
Q psy1895 93 RHHCRNCGEIF 103 (140)
Q Consensus 93 khhCr~CG~i~ 103 (140)
.+.|..||+.|
T Consensus 7 ~~~C~~C~k~f 17 (35)
T 2elx_A 7 GYVCALCLKKF 17 (35)
T ss_dssp SEECSSSCCEE
T ss_pred CeECCCCcchh
Confidence 45677777766
No 191
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.44 E-value=26 Score=21.13 Aligned_cols=20 Identities=20% Similarity=0.690 Sum_probs=12.8
Q ss_pred Ccccc-CcCCccccccccccc
Q psy1895 69 AQWAK-DKEAITCRACDKEFT 88 (140)
Q Consensus 69 ~~W~~-~~~~~~C~~C~~~F~ 88 (140)
-.|.. +.....|..|++.|.
T Consensus 16 c~~~~~~~~~~~C~~C~k~f~ 36 (95)
T 2ej4_A 16 CKWIDEAQLSRPKKSCDRTFS 36 (95)
T ss_dssp CCCCCSSCSSSSCCCCCCCCS
T ss_pred eEeecCCcCCCcccccccccC
Confidence 35653 223346889999987
No 192
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=31.32 E-value=15 Score=16.72 Aligned_cols=10 Identities=30% Similarity=1.089 Sum_probs=8.2
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 5 ~C~~C~k~f~ 14 (30)
T 2lvr_A 5 VCIHCQRQFA 14 (30)
Confidence 5888888887
No 193
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.34 E-value=35 Score=16.26 Aligned_cols=11 Identities=36% Similarity=0.912 Sum_probs=8.3
Q ss_pred ccccccccccc
Q psy1895 78 ITCRACDKEFT 88 (140)
Q Consensus 78 ~~C~~C~~~F~ 88 (140)
-.|..|++.|.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elr_A 10 HLCDMCGKKFK 20 (36)
T ss_dssp CBCTTTCCBCS
T ss_pred eecCcCCCCcC
Confidence 46888888876
No 194
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=24.90 E-value=30 Score=20.43 Aligned_cols=23 Identities=26% Similarity=0.807 Sum_probs=15.9
Q ss_pred ccccccccccccccccccccccCceEeC--CCC
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEIFCN--MCS 108 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i~C~--~Cs 108 (140)
-.|..|..++..-. |..+|. .|.
T Consensus 11 L~CP~c~~~L~~~~--------~~L~C~~~~c~ 35 (56)
T 2kpi_A 11 LACPACHAPLEERD--------AELICTGQDCG 35 (56)
T ss_dssp CCCSSSCSCEEEET--------TEEEECSSSCC
T ss_pred eeCCCCCCcceecC--------CEEEcCCcCCC
Confidence 47999999876544 666666 554
No 195
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.75 E-value=50 Score=19.31 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=13.3
Q ss_pred CCcccCcccHHHhhccccC
Q psy1895 119 KPVRVCDECNVKLVEKLTV 137 (140)
Q Consensus 119 ~~~RVC~~C~~~l~~~~~~ 137 (140)
...-+|..||..+...-++
T Consensus 52 ~~~~yC~~cy~~~~~~~~~ 70 (72)
T 1x61_A 52 ERRAYCEGCYVATLESGPS 70 (72)
T ss_dssp SSCEEEHHHHHHHHHTCSS
T ss_pred CCeEECHHHHHHHHccCCC
Confidence 3446799999988765443
No 196
>3ifu_A Non-structural protein; PRRSV, NSP1, zinc finger, papain-like cysteine protease, transcription; 2.42A {Porcine reproductive and respiratorysyndrome virus}
Probab=24.71 E-value=33 Score=24.59 Aligned_cols=20 Identities=25% Similarity=0.707 Sum_probs=15.8
Q ss_pred ccCceEeCCCCCCeeeCCCC
Q psy1895 98 NCGEIFCNMCSDNKMALPSA 117 (140)
Q Consensus 98 ~CG~i~C~~Cs~~~~~lp~~ 117 (140)
.=|+|||..|.+.+..||-.
T Consensus 19 ~~gqvyctrclsar~llpl~ 38 (180)
T 3ifu_A 19 AEGQVYCTRCLSARSLLPLN 38 (180)
T ss_dssp CSSCEEETTTCCBCCCCCSS
T ss_pred hcCeEeeeehhcccccCChh
Confidence 34899999999988777643
No 197
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=24.69 E-value=21 Score=24.98 Aligned_cols=20 Identities=30% Similarity=0.830 Sum_probs=9.8
Q ss_pred cccccccccccccccccccccC
Q psy1895 79 TCRACDKEFTVTRRRHHCRNCG 100 (140)
Q Consensus 79 ~C~~C~~~F~~~~rkhhCr~CG 100 (140)
.|..|++-|- -.+..|..||
T Consensus 49 rC~~CG~~~~--PPr~~Cp~C~ 68 (145)
T 3irb_A 49 KCSKCGRIFV--PARSYCEHCF 68 (145)
T ss_dssp ECTTTCCEEE--SCCSEETTTT
T ss_pred EeCCCCcEEc--CchhhCcCCC
Confidence 5666666332 2334455554
No 198
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=24.48 E-value=26 Score=20.73 Aligned_cols=13 Identities=31% Similarity=0.853 Sum_probs=10.7
Q ss_pred ccccccccCceEe
Q psy1895 92 RRHHCRNCGEIFC 104 (140)
Q Consensus 92 rkhhCr~CG~i~C 104 (140)
.++.|..||.|+=
T Consensus 2 ~~y~C~vCGyvYd 14 (54)
T 4rxn_A 2 KKYTCTVCGYIYD 14 (54)
T ss_dssp CCEEETTTCCEEC
T ss_pred CceECCCCCeEEC
Confidence 4688999999984
No 199
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=24.21 E-value=15 Score=21.43 Aligned_cols=27 Identities=33% Similarity=0.968 Sum_probs=17.3
Q ss_pred ccccccccccccccccccccccCce-EeCCC
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGEI-FCNMC 107 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~i-~C~~C 107 (140)
-.|..|++. +..|.+|..|... +|..|
T Consensus 7 ~~Cd~C~~~---ig~R~~C~~C~dyDLC~~C 34 (52)
T 1tot_A 7 YTCNECKHH---VETRWHCTVCEDYDLCINC 34 (52)
T ss_dssp EEETTTTEE---ESSEEEESSSSSCEECHHH
T ss_pred EECCCCCCC---CcceEEcCCCCCchhHHHH
Confidence 368888886 2567888777543 44444
No 200
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=24.17 E-value=40 Score=20.84 Aligned_cols=27 Identities=26% Similarity=0.684 Sum_probs=18.0
Q ss_pred cccccccc---cccccccccccccCceEeC
Q psy1895 79 TCRACDKE---FTVTRRRHHCRNCGEIFCN 105 (140)
Q Consensus 79 ~C~~C~~~---F~~~~rkhhCr~CG~i~C~ 105 (140)
.|..|... |+--.....|..||.++|.
T Consensus 9 KCp~C~niq~VFShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 9 KCPDCEHEQVIFDHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp ECTTTCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred ECCCCCCceEEEecCceEEEcccCCCEEee
Confidence 47777764 5544556668888887764
No 201
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=24.12 E-value=31 Score=21.20 Aligned_cols=13 Identities=8% Similarity=0.225 Sum_probs=10.1
Q ss_pred ccccccccccccc
Q psy1895 78 ITCRACDKEFTVT 90 (140)
Q Consensus 78 ~~C~~C~~~F~~~ 90 (140)
-.|+.|..++.+.
T Consensus 11 L~CP~ck~~L~~~ 23 (67)
T 2jny_A 11 LACPKDKGPLRYL 23 (67)
T ss_dssp CBCTTTCCBCEEE
T ss_pred hCCCCCCCcCeEe
Confidence 4799999987654
No 202
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.04 E-value=35 Score=20.38 Aligned_cols=44 Identities=18% Similarity=0.471 Sum_probs=29.6
Q ss_pred CCccccccccccccccccccccccCce-EeCCCCCCeeeCCCCCCCcccCcccHHHhhc
Q psy1895 76 EAITCRACDKEFTVTRRRHHCRNCGEI-FCNMCSDNKMALPSAAKPVRVCDECNVKLVE 133 (140)
Q Consensus 76 ~~~~C~~C~~~F~~~~rkhhCr~CG~i-~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~ 133 (140)
+...|.+|...+.. .---.||++ ||..|... .+.|..|...+..
T Consensus 14 ~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~----------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKY----------FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHH----------CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCC----EEEECCCChhhhHHHHhc----------CCCCCCCCcchhc
Confidence 34689999886642 223579998 99999762 2567777666543
No 203
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=23.97 E-value=14 Score=21.85 Aligned_cols=20 Identities=15% Similarity=0.589 Sum_probs=13.0
Q ss_pred ccccCcCCcccccccccccc
Q psy1895 70 QWAKDKEAITCRACDKEFTV 89 (140)
Q Consensus 70 ~W~~~~~~~~C~~C~~~F~~ 89 (140)
.|...+....|..|+..|.+
T Consensus 40 ~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 40 TWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp HHHHHHTCSBCTTTCCBCCC
T ss_pred HHHHhCCCCccCCCCCeeec
Confidence 46544444678888887764
No 204
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.90 E-value=30 Score=16.52 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=7.2
Q ss_pred cccccccCceE
Q psy1895 93 RHHCRNCGEIF 103 (140)
Q Consensus 93 khhCr~CG~i~ 103 (140)
.+.|..||..|
T Consensus 9 ~~~C~~C~k~f 19 (36)
T 2elt_A 9 PYKCPQCSYAS 19 (36)
T ss_dssp SEECSSSSCEE
T ss_pred CCCCCCCCccc
Confidence 45677777766
No 205
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=23.84 E-value=23 Score=24.89 Aligned_cols=22 Identities=27% Similarity=0.699 Sum_probs=11.1
Q ss_pred ccccccccccccccccccccccCc
Q psy1895 78 ITCRACDKEFTVTRRRHHCRNCGE 101 (140)
Q Consensus 78 ~~C~~C~~~F~~~~rkhhCr~CG~ 101 (140)
..|..|++-+ +-.+..|..||.
T Consensus 48 ~rC~~CG~~~--fPPr~~Cp~C~s 69 (145)
T 2gnr_A 48 SKCSKCGRIF--VPARSYCEHCFV 69 (145)
T ss_dssp EECTTTCCEE--ESCCSEETTTTE
T ss_pred EEECCCCcEE--eCCCCCCCCCCC
Confidence 4566676643 233344555543
No 206
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.66 E-value=42 Score=20.54 Aligned_cols=27 Identities=26% Similarity=0.727 Sum_probs=18.8
Q ss_pred cccccccc---cccccccccccccCceEeC
Q psy1895 79 TCRACDKE---FTVTRRRHHCRNCGEIFCN 105 (140)
Q Consensus 79 ~C~~C~~~---F~~~~rkhhCr~CG~i~C~ 105 (140)
.|..|... |+--.....|..||.++|.
T Consensus 17 kCp~C~~~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 17 KCIDCGNEQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp ECSSSCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred ECCCCCCeeEEEecCCeEEEccCcCCEEec
Confidence 48888775 5555556668888888774
No 207
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.64 E-value=56 Score=20.21 Aligned_cols=51 Identities=18% Similarity=0.426 Sum_probs=32.2
Q ss_pred cCCccccccccccccccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 75 KEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
+....|.+|...|.. ..-|..|+..|=..|...++. ....++|..|...+.
T Consensus 13 ~~i~~C~IC~~~i~~---g~~C~~C~h~fH~~Ci~kWl~----~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQ----SNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSS---SEECSSSCCEECHHHHHHHST----TCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHccc---CCccCCCCchhhHHHHHHHHH----hcCCCCCCCCcCcCC
Confidence 345789999998863 345777777765556554432 122377888876654
No 208
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.43 E-value=32 Score=16.54 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=7.1
Q ss_pred cccccccCceE
Q psy1895 93 RHHCRNCGEIF 103 (140)
Q Consensus 93 khhCr~CG~i~ 103 (140)
.+-|..||..|
T Consensus 9 ~~~C~~C~k~f 19 (36)
T 2elv_A 9 LYDCHICERKF 19 (36)
T ss_dssp CEECSSSCCEE
T ss_pred CeECCCCCCcc
Confidence 45577777666
No 209
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=23.42 E-value=21 Score=22.20 Aligned_cols=12 Identities=42% Similarity=0.769 Sum_probs=8.8
Q ss_pred CcccCcccHHHh
Q psy1895 120 PVRVCDECNVKL 131 (140)
Q Consensus 120 ~~RVC~~C~~~l 131 (140)
.+.+|+.|....
T Consensus 39 gvyICdeCI~~c 50 (67)
T 1ovx_A 39 SVYICDECVDLC 50 (67)
T ss_dssp SCEEEHHHHHHH
T ss_pred CCChhHHHHHHH
Confidence 478999987543
No 210
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=23.36 E-value=19 Score=17.14 Aligned_cols=10 Identities=50% Similarity=1.145 Sum_probs=8.6
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 4 ~C~~C~k~f~ 13 (32)
T 2kfq_A 4 ACPACPKRFM 13 (32)
T ss_dssp SSSSSCTTHH
T ss_pred CCCCCCcccC
Confidence 5889999987
No 211
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=23.27 E-value=34 Score=20.68 Aligned_cols=23 Identities=30% Similarity=0.813 Sum_probs=16.5
Q ss_pred CccccccccccccccccccccccCceE
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEIF 103 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i~ 103 (140)
...|..|+. .++ ++.|..||...
T Consensus 6 mr~C~~Cgv-YTL---k~~CP~CG~~T 28 (60)
T 2apo_B 6 MKKCPKCGL-YTL---KEICPKCGEKT 28 (60)
T ss_dssp CEECTTTCC-EES---SSBCSSSCSBC
T ss_pred ceeCCCCCC-Eec---cccCcCCCCcC
Confidence 457888866 333 78899998874
No 212
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.07 E-value=42 Score=22.41 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=19.0
Q ss_pred Cccccccccccccccc------cccccccCceEe
Q psy1895 77 AITCRACDKEFTVTRR------RHHCRNCGEIFC 104 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~r------khhCr~CG~i~C 104 (140)
...|+.|+.-.-+-.. +..|+.||.++=
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 3468888886554322 577999998763
No 213
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=22.97 E-value=16 Score=21.48 Aligned_cols=48 Identities=17% Similarity=0.349 Sum_probs=28.6
Q ss_pred CccccccccccccccccccccccCce-EeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEI-FCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i-~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
...|.+|...+.-.. ..-..||++ +|..|...... ....|..|...+.
T Consensus 7 ~~~C~IC~~~~~~~~--~~~~pCgH~~~C~~C~~~~~~------~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGN--IIHGRTGHLVTCFHCARRLKK------AGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEE--EEETTEEEEEECHHHHHHHHH------TTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeE--EEecCCCCHhHHHHHHHHHHH------hCCcCCCcCchhh
Confidence 457999988654110 011379998 99999865321 1246777765543
No 214
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=22.97 E-value=32 Score=16.35 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=7.2
Q ss_pred cccccccCceE
Q psy1895 93 RHHCRNCGEIF 103 (140)
Q Consensus 93 khhCr~CG~i~ 103 (140)
.+.|..||+.|
T Consensus 7 ~~~C~~C~k~f 17 (35)
T 1srk_A 7 PFVCRICLSAF 17 (35)
T ss_dssp CEECSSSCCEE
T ss_pred CeeCCCCCccc
Confidence 45577777766
No 215
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.83 E-value=18 Score=21.87 Aligned_cols=33 Identities=27% Similarity=0.776 Sum_probs=19.2
Q ss_pred CccccccccccccccccccccccCc--eEeCCCCC
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGE--IFCNMCSD 109 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~--i~C~~Cs~ 109 (140)
.-.|..|+..|....-..|=..||. +.|..|..
T Consensus 17 ~~~C~~C~~~~~~~~L~~H~~~c~~~~~~C~~C~~ 51 (75)
T 2d9k_A 17 LAVCQHCDLELSILKLKEHEDYCGARTELCGNCGR 51 (75)
T ss_dssp CEECSSSCCEECHHHHHHHHHHHHHCEEECSSSCC
T ss_pred ccCCcccChHhhHHHHHHHHhHcCCCceEcccCCC
Confidence 3468899999874332222255553 35666654
No 216
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=22.80 E-value=26 Score=23.59 Aligned_cols=27 Identities=26% Similarity=0.644 Sum_probs=18.4
Q ss_pred ccccccccccccccc----cccccccCceEeCC
Q psy1895 78 ITCRACDKEFTVTRR----RHHCRNCGEIFCNM 106 (140)
Q Consensus 78 ~~C~~C~~~F~~~~r----khhCr~CG~i~C~~ 106 (140)
..|+.|++. . +.| .-+|+.||..|=..
T Consensus 37 y~CpfCgk~-~-vKR~a~GIW~C~kCg~~~AGG 67 (103)
T 4a17_Y 37 YGCPFCGKV-A-VKRAAVGIWKCKPCKKIIAGG 67 (103)
T ss_dssp EECTTTCCE-E-EEEEETTEEEETTTTEEEECC
T ss_pred CCCCCCCCc-e-eeecCcceEEcCCCCCEEeCC
Confidence 369999874 2 333 34799999888543
No 217
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=22.79 E-value=23 Score=20.66 Aligned_cols=12 Identities=42% Similarity=0.769 Sum_probs=9.0
Q ss_pred CcccCcccHHHh
Q psy1895 120 PVRVCDECNVKL 131 (140)
Q Consensus 120 ~~RVC~~C~~~l 131 (140)
.+.+|+.|...-
T Consensus 32 gv~IC~eCi~~~ 43 (51)
T 2ds5_A 32 SVYICDECVDLC 43 (51)
T ss_dssp SCEEEHHHHHHH
T ss_pred CCEehHHHHHHH
Confidence 478999997653
No 218
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.69 E-value=20 Score=23.29 Aligned_cols=13 Identities=15% Similarity=0.480 Sum_probs=9.7
Q ss_pred CCccccccccccc
Q psy1895 76 EAITCRACDKEFT 88 (140)
Q Consensus 76 ~~~~C~~C~~~F~ 88 (140)
..-.|..|++.|.
T Consensus 17 kpy~C~~Cgk~F~ 29 (102)
T 2ghf_A 17 GGYECKYCTFQTP 29 (102)
T ss_dssp SSEECSSCSCEES
T ss_pred cCcCCCCCCCccC
Confidence 3446888988886
No 219
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=22.26 E-value=34 Score=20.39 Aligned_cols=31 Identities=23% Similarity=0.622 Sum_probs=22.0
Q ss_pred CccccccccccccccccccccccCceEeCCC
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEIFCNMC 107 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i~C~~C 107 (140)
...|..|++.-.+-+.-..|+.|+-+.=..|
T Consensus 19 ~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C 49 (61)
T 4b6d_A 19 PESCVPCGKRIKFGKLSLKCRDCRVVSHPEC 49 (61)
T ss_dssp CEECTTTCCEECTTCEEEEESSSSCEECGGG
T ss_pred CcccccccCEEEEeeEeeECCCCCCeEchhH
Confidence 4689999887665456688999986653344
No 220
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=22.24 E-value=1.8e+02 Score=19.84 Aligned_cols=30 Identities=27% Similarity=0.612 Sum_probs=14.0
Q ss_pred cccccccccccccccccccccCceEeCCCCCCe
Q psy1895 79 TCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNK 111 (140)
Q Consensus 79 ~C~~C~~~F~~~~rkhhCr~CG~i~C~~Cs~~~ 111 (140)
.|. |+..|.+...-.+.. -.+-|..||-..
T Consensus 114 ~Cr-CG~~f~i~~~~l~~~--~~v~C~sCSl~~ 143 (155)
T 2l6l_A 114 SCR-CGGKYSVSKDEAEEV--SLISCDTCSLII 143 (155)
T ss_dssp ECS-SSCEEEEETTHHHHC--CEEECSSSSCEE
T ss_pred cCC-CCCeEEecHHHhCCC--CEEECCCCceEE
Confidence 354 666665443322211 235566666543
No 221
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.13 E-value=25 Score=17.05 Aligned_cols=12 Identities=33% Similarity=0.766 Sum_probs=7.4
Q ss_pred ccccccccCceE
Q psy1895 92 RRHHCRNCGEIF 103 (140)
Q Consensus 92 rkhhCr~CG~i~ 103 (140)
+.+.|..||..|
T Consensus 8 k~~~C~~C~k~f 19 (37)
T 2elo_A 8 RSYSCPVCEKSF 19 (37)
T ss_dssp CCCEETTTTEEC
T ss_pred CCcCCCCCCCcc
Confidence 345577777665
No 222
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=22.09 E-value=25 Score=18.88 Aligned_cols=24 Identities=38% Similarity=0.786 Sum_probs=14.8
Q ss_pred ccccccccccccccc-----ccccccCce
Q psy1895 79 TCRACDKEFTVTRRR-----HHCRNCGEI 102 (140)
Q Consensus 79 ~C~~C~~~F~~~~rk-----hhCr~CG~i 102 (140)
.|..|+.+-+.+.++ ..|..||..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 478888887755442 236666653
No 223
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=21.84 E-value=41 Score=18.78 Aligned_cols=24 Identities=25% Similarity=0.946 Sum_probs=14.8
Q ss_pred CccccccccccccccccccccccCce-EeC
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEI-FCN 105 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i-~C~ 105 (140)
...|..|+++ ..+.|..|..+ ||+
T Consensus 9 ~~~C~~C~~~-----~~~~C~~C~~~~YCs 33 (52)
T 2jw6_A 9 EQSCVNCGRE-----AMSECTGCHKVNYCS 33 (52)
T ss_dssp --CCSSSSSS-----CSEECTTTCSSEESS
T ss_pred CCcCCCCCCC-----CcCcCCCCCCEeecC
Confidence 3578888874 34667777765 443
No 224
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=21.80 E-value=50 Score=20.12 Aligned_cols=24 Identities=25% Similarity=0.778 Sum_probs=16.8
Q ss_pred CccccccccccccccccccccccCce-EeC
Q psy1895 77 AITCRACDKEFTVTRRRHHCRNCGEI-FCN 105 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rkhhCr~CG~i-~C~ 105 (140)
...|..|+++ ..+.|..|..+ ||+
T Consensus 15 ~~~C~~C~~~-----~~~~Cs~Ck~v~YCs 39 (70)
T 2d8q_A 15 RPRCAYCSAE-----ASKRCSRCQNEWYCC 39 (70)
T ss_dssp CCBCSSSCCB-----CCCBCTTTSCCBCSC
T ss_pred CCcCCCCCCc-----ccccCCCCCCEeeCC
Confidence 4689999884 35678888776 443
No 225
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.79 E-value=35 Score=16.37 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=7.1
Q ss_pred cccccccCceE
Q psy1895 93 RHHCRNCGEIF 103 (140)
Q Consensus 93 khhCr~CG~i~ 103 (140)
.+-|..||..|
T Consensus 9 ~~~C~~C~k~f 19 (36)
T 2elq_A 9 PFKCSLCEYAT 19 (36)
T ss_dssp SEECSSSSCEE
T ss_pred CccCCCCCchh
Confidence 45577777766
No 226
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.62 E-value=35 Score=16.47 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=7.7
Q ss_pred ccccccccCceE
Q psy1895 92 RRHHCRNCGEIF 103 (140)
Q Consensus 92 rkhhCr~CG~i~ 103 (140)
+.+.|..||..|
T Consensus 8 k~~~C~~C~k~f 19 (37)
T 2elp_A 8 RAMKCPYCDFYF 19 (37)
T ss_dssp CCEECSSSSCEE
T ss_pred CCeECCCCChhh
Confidence 345677777766
No 227
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=21.45 E-value=33 Score=24.93 Aligned_cols=12 Identities=42% Similarity=1.052 Sum_probs=9.2
Q ss_pred cccccccCceEe
Q psy1895 93 RHHCRNCGEIFC 104 (140)
Q Consensus 93 khhCr~CG~i~C 104 (140)
+..|+.||.|+=
T Consensus 155 ~~~C~~CG~~~~ 166 (191)
T 1lko_A 155 KWRCRNCGYVHE 166 (191)
T ss_dssp EEEETTTCCEEE
T ss_pred eEEECCCCCEee
Confidence 577888888863
No 228
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=21.40 E-value=37 Score=19.33 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=9.3
Q ss_pred Ccccccccccccccccc
Q psy1895 77 AITCRACDKEFTVTRRR 93 (140)
Q Consensus 77 ~~~C~~C~~~F~~~~rk 93 (140)
...|..|+..-+.+-|+
T Consensus 4 ~~~C~~C~tt~Tp~WR~ 20 (46)
T 1gnf_A 4 ARECVNCGATATPLWRR 20 (46)
T ss_dssp SCCCTTTCCCCCSSCBC
T ss_pred CCCCCCcCCCCCCcCcc
Confidence 34566666665544443
No 229
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=21.17 E-value=59 Score=21.99 Aligned_cols=9 Identities=33% Similarity=1.143 Sum_probs=4.9
Q ss_pred CcccCcccH
Q psy1895 120 PVRVCDECN 128 (140)
Q Consensus 120 ~~RVC~~C~ 128 (140)
.++||+.|.
T Consensus 25 ~~~VC~~Cr 33 (111)
T 1d4u_A 25 DLPTCDDCR 33 (111)
T ss_dssp SCCCCTTTC
T ss_pred Ceeechhhc
Confidence 455555554
No 230
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=21.16 E-value=33 Score=23.65 Aligned_cols=10 Identities=40% Similarity=1.139 Sum_probs=4.9
Q ss_pred cccccccccc
Q psy1895 79 TCRACDKEFT 88 (140)
Q Consensus 79 ~C~~C~~~F~ 88 (140)
.|..|++.|.
T Consensus 51 ~C~~C~~~f~ 60 (190)
T 2i13_A 51 KCPECGKSFS 60 (190)
T ss_dssp ECTTTCCEES
T ss_pred cCCCcCchhC
Confidence 4555555544
No 231
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=21.13 E-value=64 Score=18.75 Aligned_cols=26 Identities=19% Similarity=0.829 Sum_probs=17.2
Q ss_pred cCCccccccccccccccccccccccCce-EeC
Q psy1895 75 KEAITCRACDKEFTVTRRRHHCRNCGEI-FCN 105 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~~~rkhhCr~CG~i-~C~ 105 (140)
.....|..|.++ ..+.|..|..+ ||+
T Consensus 13 ~~~~~C~~C~~~-----~~~~Cs~C~~v~YCs 39 (60)
T 2dj8_A 13 DSSESCWNCGRK-----ASETCSGCNTARYCG 39 (60)
T ss_dssp CCSCCCSSSCSC-----CCEECTTTSCCEESS
T ss_pred CCCcccccCCCC-----CcccCCCCCCEeeeC
Confidence 345689999883 34668888765 443
No 232
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.06 E-value=46 Score=23.86 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=10.0
Q ss_pred ccccccccCceEe
Q psy1895 92 RRHHCRNCGEIFC 104 (140)
Q Consensus 92 rkhhCr~CG~i~C 104 (140)
..+.|+.||.|+=
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 4567999999873
No 233
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.90 E-value=32 Score=17.14 Aligned_cols=12 Identities=25% Similarity=0.844 Sum_probs=10.0
Q ss_pred cccccccccccc
Q psy1895 78 ITCRACDKEFTV 89 (140)
Q Consensus 78 ~~C~~C~~~F~~ 89 (140)
-.|..|++.|..
T Consensus 11 ~~C~~C~k~f~~ 22 (42)
T 2yte_A 11 YSCAECKETFSD 22 (42)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCCccCC
Confidence 479999999983
No 234
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.59 E-value=37 Score=20.99 Aligned_cols=14 Identities=14% Similarity=0.619 Sum_probs=10.4
Q ss_pred Cccccccccccccc
Q psy1895 77 AITCRACDKEFTVT 90 (140)
Q Consensus 77 ~~~C~~C~~~F~~~ 90 (140)
.-.|+.|..+..+.
T Consensus 8 iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 8 ILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCBCTTTCCBEEEE
T ss_pred heECCCCCCcCEEe
Confidence 34799999987654
No 235
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=20.47 E-value=20 Score=22.19 Aligned_cols=41 Identities=22% Similarity=0.606 Sum_probs=27.6
Q ss_pred cccccccccccccccccccccCce-EeCCCCCCeeeCCCCCCCcccCcccHHHhhc
Q psy1895 79 TCRACDKEFTVTRRRHHCRNCGEI-FCNMCSDNKMALPSAAKPVRVCDECNVKLVE 133 (140)
Q Consensus 79 ~C~~C~~~F~~~~rkhhCr~CG~i-~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~~ 133 (140)
.|.+|...+.-. ---.||++ ||..|.... +.|..|...+..
T Consensus 20 ~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 20 LCMVCCEEEINS----TFCPCGHTVCCESCAAQL----------QSCPVCRSRVEH 61 (79)
T ss_dssp BCTTTSSSBCCE----EEETTCBCCBCHHHHTTC----------SBCTTTCCBCCE
T ss_pred EeEEeCcccCcE----EEECCCCHHHHHHHHHhc----------CcCCCCCchhhC
Confidence 699998766521 12379999 999997642 367777665543
No 236
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=20.40 E-value=27 Score=18.73 Aligned_cols=13 Identities=31% Similarity=0.876 Sum_probs=9.1
Q ss_pred cccccccccCceE
Q psy1895 91 RRRHHCRNCGEIF 103 (140)
Q Consensus 91 ~rkhhCr~CG~i~ 103 (140)
.-+.|||.|.+-+
T Consensus 7 kikqhcrfckkky 19 (37)
T 2elu_A 7 GIKQHCRFCKKKY 19 (37)
T ss_dssp CCCCEETTTTEEC
T ss_pred HHHHHHHHHHHHH
Confidence 4467899887654
No 237
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.35 E-value=16 Score=22.99 Aligned_cols=54 Identities=19% Similarity=0.394 Sum_probs=34.3
Q ss_pred cCCcccccccccccc---ccccccccccCceEeCCCCCCeeeCCCCCCCcccCcccHHHhh
Q psy1895 75 KEAITCRACDKEFTV---TRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132 (140)
Q Consensus 75 ~~~~~C~~C~~~F~~---~~rkhhCr~CG~i~C~~Cs~~~~~lp~~~~~~RVC~~C~~~l~ 132 (140)
.+...|.+|...|.. +...=+|+-.++.|-..|...++.. ...+.|..|...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~----~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS----SDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH----HCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh----CCCCCCCCCCCeee
Confidence 345689999988852 2211233334599999999877542 12357888876654
No 238
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=20.29 E-value=25 Score=18.47 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=10.5
Q ss_pred Ccccccccccccc
Q psy1895 77 AITCRACDKEFTV 89 (140)
Q Consensus 77 ~~~C~~C~~~F~~ 89 (140)
.-.|..|++.|+.
T Consensus 8 p~~C~~CgK~F~~ 20 (36)
T 1fv5_A 8 RFMCLPCGIAFSS 20 (36)
T ss_dssp CCEETTTTEECSC
T ss_pred CeECCCCCCccCC
Confidence 3479999999983
No 239
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.13 E-value=34 Score=21.17 Aligned_cols=14 Identities=29% Similarity=0.795 Sum_probs=11.4
Q ss_pred cccccccccCceEe
Q psy1895 91 RRRHHCRNCGEIFC 104 (140)
Q Consensus 91 ~rkhhCr~CG~i~C 104 (140)
..++.|+.||.|+=
T Consensus 5 m~~y~C~vCGyiYd 18 (70)
T 1dx8_A 5 EGKYECEACGYIYE 18 (70)
T ss_dssp SSCEEETTTCCEEC
T ss_pred CceEEeCCCCEEEc
Confidence 35788999999974
Done!