RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1895
(140 letters)
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics,
structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB:
2yqm_A
Length = 82
Score = 104 bits (260), Expect = 2e-30
Identities = 41/75 (54%), Positives = 53/75 (70%)
Query: 66 ATEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCD 125
W KD EA CR C+KEF+++RR+HHCRNCG IFCN CS N++ALPS KPVRVCD
Sbjct: 8 LKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCD 67
Query: 126 ECNVKLVEKLTVVNS 140
C+ L+++ + S
Sbjct: 68 SCHTLLLQRCSSTAS 82
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania
major}
Length = 84
Score = 100 bits (250), Expect = 7e-29
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 62 IAKRATEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPS--AAK 119
+ ++ ++ W +D++A C C FT T RRHHCRNCG + C CS ++ A+P +
Sbjct: 6 MGEKQSKGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITE 65
Query: 120 PVRVCDECNVKL 131
P RVCD C + L
Sbjct: 66 PERVCDACYLAL 77
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 100 bits (251), Expect = 1e-28
Identities = 42/102 (41%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 30 DKYKESELALEELGAQLSKSKLQVSDLMEEHQIAKRATEAQWAKDKEAITCRACDKEFTV 89
K E + L+ A + + + L +H +A +WA+D E C AC K F+V
Sbjct: 25 TKVLELQRKLDNTTAAVQELGRENQSLQIKHT---QALNRKWAEDNEVQNCMACGKGFSV 81
Query: 90 TRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKL 131
T RRHHCR CG IFC CS PS+ KPVRVCD C L
Sbjct: 82 TVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDL 123
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics
consortium, SGC, lipid BIND protein, transport protein;
1.09A {Homo sapiens}
Length = 90
Score = 98.3 bits (245), Expect = 3e-28
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 66 ATEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCD 125
+ W D EA C C +FT T+RRHHCR CG++FC +C + K L K RVC
Sbjct: 9 QKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCV 68
Query: 126 ECNVKL 131
C +
Sbjct: 69 VCYETI 74
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide
binding, zinc binding, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 84
Score = 91.5 bits (227), Expect = 1e-25
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 69 AQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPS--------AAKP 120
+ C C F+V ++R C NCG FC+ C K+ S +
Sbjct: 6 SGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRET 65
Query: 121 VRVCDECNVKLVEK 134
V VC CN L +
Sbjct: 66 VFVCASCNQTLSKS 79
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein
VPS27; endosome maturation, intracellular trafficking;
1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Length = 73
Score = 89.0 bits (221), Expect = 1e-24
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 65 RATEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPS--AAKPVR 122
T A W C C K+F++ R+HHCR+CG +FC S N + LP +PVR
Sbjct: 2 SKTPADWIDSDA---CMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVR 58
Query: 123 VCDEC 127
VCD C
Sbjct: 59 VCDSC 63
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Mus musculus} SCOP:
g.50.1.1
Length = 88
Score = 88.3 bits (219), Expect = 3e-24
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 69 AQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAA-KPVRVCDEC 127
C C +FT+ ++ + C+NCG FCN C +P A +VC +C
Sbjct: 1 GSSGSSGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQC 60
Query: 128 NVKLVEK 134
+ L
Sbjct: 61 HTILTRG 67
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate;
VHS, FYVE, zinc finger, superhelix, transferase; HET:
CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2
g.50.1.1
Length = 220
Score = 88.7 bits (219), Expect = 7e-23
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 6 LKRSFDDHVKMNKIAEHVKDNVSDDKYKESELALEELGAQLSKSKLQVSDLMEEHQIAKR 65
L+ + ++V+ K+ E V+ + + A+++ L +L E +
Sbjct: 94 LESTPHENVR-QKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFPELREADAMFTA 152
Query: 66 ATEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAA--KPVRV 123
T WA + C C EFT T R+HHCRNCG++FC C+ + LP K VRV
Sbjct: 153 DTAPNWADGRV---CHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRV 209
Query: 124 CDECNVKL 131
CD C L
Sbjct: 210 CDGCFAAL 217
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate;
signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Length = 226
Score = 87.5 bits (216), Expect = 2e-22
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 6 LKRSFDDHVKMNKIAEHVKDNVSDDKYKESELALEELGAQLSKSKLQVSDLMEEHQIAKR 65
LKR + +V+ NKI ++ + + +++ + + E +
Sbjct: 97 LKRQVEVNVR-NKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFPEFKESDAMFAA 155
Query: 66 ATEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPS--AAKPVRV 123
W +E C C +F V R+HHCR CG+IFC CS +P K VRV
Sbjct: 156 ERAPDWVDAEE---CHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRV 212
Query: 124 CDECNVKLVEK 134
C+ C +L K
Sbjct: 213 CEPCYEQLNRK 223
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 77.7 bits (191), Expect = 6e-18
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 35 SELALEELGAQLSKSKLQVSDLMEEHQIAKRATEAQWAKDKEAITCRACDKEFTVTRRRH 94
S E+ AQ + ++ E ++ + C C +F++T RRH
Sbjct: 333 SRALPEDYKAQALAAFHHSVEIRERLGVSLGERPPTLVPVTHVMMCMNCGCDFSLTLRRH 392
Query: 95 HCRNCGEIFCNMCSDNKMALPSAA-KPVRVCDECNVKLVEK 134
HC CG+I C CS NK L + +VCD C +L ++
Sbjct: 393 HCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELKKR 433
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module,
phosphoinositide binding, caspase regulation, metal
binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1
g.50.1.1
Length = 120
Score = 64.4 bits (156), Expect = 2e-14
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 69 AQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECN 128
+ + +C++C F T R+ C +C + FC CS R+C C
Sbjct: 11 SFPSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQV------GNGPRLCLLCQ 64
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 52.5 bits (126), Expect = 4e-09
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 70 QWAKDKEAITCRACDKEFTVT-RRRHHCRNCGEIFCNMCSD 109
Q +E +C+AC T + + C C C
Sbjct: 350 QMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 47.0 bits (111), Expect = 3e-07
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 8/73 (10%)
Query: 61 QIAKRATEAQWAKDKEAITCRACDKE----FTVTRRRHHCRNCGEIFC----NMCSDNKM 112
+ Q +E +C+AC F R H CR C C +
Sbjct: 513 NATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRVPPCGRHGQ 572
Query: 113 ALPSAAKPVRVCD 125
P K ++
Sbjct: 573 DFPGTMKKDKLHR 585
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic
transcription factor, zinc binding protein, ring finger;
NMR {Homo sapiens} SCOP: g.49.1.2
Length = 59
Score = 31.8 bits (72), Expect = 0.011
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 67 TEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMC 107
E + C C E + + C C +FC C
Sbjct: 5 QEIPLEEYNGERFCYGCQGELK-DQHVYVCAVCQNVFCVDC 44
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 32.6 bits (73), Expect = 0.020
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 3/77 (3%)
Query: 52 QVSDLMEEHQIAKRATEAQWAKDKEAITCRACDKEF-TVTRRRHHCRNCGEIFCNMCSDN 110
+ + + T + C C ++ + C +C + C C
Sbjct: 30 TMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89
Query: 111 KMALPSAAKPVRVCDEC 127
+ PV +C C
Sbjct: 90 --TSNNRPHPVWLCKIC 104
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 32.3 bits (72), Expect = 0.025
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 6/69 (8%)
Query: 60 HQIAKRATEAQWAKDKEAITCRACDKEFT-VTRRRHHCRNCGEIFCNMCSDNKMALPSAA 118
+ + + C C + + + R C C C CS
Sbjct: 51 QKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-----AHPE 105
Query: 119 KPVRVCDEC 127
+ +CD C
Sbjct: 106 EQGWLCDPC 114
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.9 bits (72), Expect = 0.039
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 63 AKRATEAQWAKDKEA-ITCRACDKEFTVTRRRHHCRNCGEIFCNMC 107
+ + + +TC C R + G++ C +C
Sbjct: 6 SIDKRAGRRGPNLNIVLTCPECKVYPPKIVERF---SEGDVVCALC 48
Score = 28.1 bits (62), Expect = 0.89
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 7/43 (16%)
Query: 93 RHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVEKL 135
C C + ++ VC C + L +KL
Sbjct: 21 VLTCPECKVYPPKIVERF-------SEGDVVCALCGLVLSDKL 56
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.072
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 19/62 (30%)
Query: 15 KMNKIAEHVKDNVSDDKY-----KESELALEELGAQLSKSK--------LQVS---DLME 58
+ + E V NV + +Y AL+ + L+ K LQ S + +E
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDLR---ALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Query: 59 EH 60
H
Sbjct: 1893 GH 1894
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 27.8 bits (61), Expect = 0.80
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 6/65 (9%)
Query: 70 QWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNV 129
+ C E R CG +FC+ C + + K C C
Sbjct: 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL------KNANTCPTCRK 121
Query: 130 KLVEK 134
K+ K
Sbjct: 122 KINHK 126
Score = 25.5 bits (55), Expect = 5.0
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 72 AKDKEAITCRACDKEFTVTRRRHH---CRNCGEIFCNMC 107
A ++C C ++ + CG +FC+ C
Sbjct: 2 AMGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC 40
>3lhs_A Ferrichrome ABC transporter lipoprotein; siderophore, iron,
receptor, binding protein, T protein; HET: SF8; 1.30A
{Staphylococcus aureus subsp} PDB: 3eiw_A 3eix_A*
3li2_A*
Length = 296
Score = 28.2 bits (63), Expect = 0.81
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 15 KMNKIAEHVKDNVSDDKYKESELALEELGAQLSKSKLQVSDLMEEHQ--IAKRATEAQWA 72
++NKIA + D YK++ + + + L+K K + + EH I K E ++
Sbjct: 102 ELNKIAPTLSLKSFDGDYKQNINSFKTIAKALNKEK-EGEKRLAEHDKLINKYKDEIKFD 160
Query: 73 KDKEAITCRACDKEFTV 89
++++ +
Sbjct: 161 RNQKVLPAVVAKAGLLA 177
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi;
1.50A {Methanopyrus kandleri}
Length = 195
Score = 27.0 bits (59), Expect = 2.1
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 4/42 (9%)
Query: 94 HHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLVEKL 135
HC + C M + + K C C L L
Sbjct: 154 GHCPDRN---CVMSFSSSLL-EVDRKSPNFCRRCTELLQRNL 191
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 27.2 bits (59), Expect = 2.2
Identities = 10/79 (12%), Positives = 23/79 (29%)
Query: 27 VSDDKYKESELALEELGAQLSKSKLQVSDLMEEHQIAKRATEAQWAKDKEAITCRACDKE 86
S + E+E ++K+ ++ EE K + + +
Sbjct: 746 TSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKERVLRDSRRKEIKPK 805
Query: 87 FTVTRRRHHCRNCGEIFCN 105
++ C C C+
Sbjct: 806 VVEGQKNLLCGKCKAYACS 824
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Length = 82
Score = 25.8 bits (56), Expect = 2.4
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 76 EAITCRACDKEFTVTRRRHHCRNCGEI----FCNMCSDNKMA 113
C C E + R HC++C FC+ CSD
Sbjct: 20 VGFKCDNCGIE-PIQGVRWHCQDCPPEMSLDFCDSCSDCLHE 60
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Length = 98
Score = 25.8 bits (56), Expect = 3.4
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 55 DLMEEHQIAKRATEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEI-FCNMCSDNK 111
+ + A E + I C C + + + + C C E C C D+
Sbjct: 9 EEFKNSSKLVAAAEKERLDKHLGIPCNNCKQF-PIEGKCYKCTECIEYHLCQECFDSY 65
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 4.1
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 22/74 (29%)
Query: 20 AEHVKDNVSDDKYKES-ELALEELGAQLSKSKLQ--------VSDLMEEH--QIAK---- 64
E ++ K++E L+EL A + + + + + Q+ K
Sbjct: 84 PESIR------KWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 65 -RATEAQWAKDKEA 77
R + + + +A
Sbjct: 138 NRIADKAFYQQPDA 151
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 24.9 bits (54), Expect = 4.3
Identities = 6/29 (20%), Positives = 7/29 (24%), Gaps = 3/29 (10%)
Query: 79 TCRACDKEFTVTRRRHHCRNCGEIFCNMC 107
C C + C CG C
Sbjct: 17 ICNICHSLLIQGQS---CETCGIRMHLPC 42
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 25.7 bits (57), Expect = 5.4
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 6/35 (17%)
Query: 94 HHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECN 128
CR C S N + PS +C EC
Sbjct: 135 FECRGCMRHHAVTQSTNMITEPS------LCSECG 163
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural genomics;
NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 24.6 bits (53), Expect = 5.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 79 TCRACDKEFTVTRRRHHCRNCGEIFCNMC 107
TC C+ E + + RN G I C +C
Sbjct: 25 TCPFCNHEKSCDVKMDRARNTGVISCTVC 53
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: g.44.1.4
Length = 86
Score = 24.6 bits (53), Expect = 7.6
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 64 KRATEAQWAKDKEAITCRACDKEFTVTRR--RHHCRNCGEIFCNMC 107
K+ TE +D + + C C F R C C + FC C
Sbjct: 12 KKLTEGVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRC 57
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome
biogenesis, metal BIN protein; NMR {Pyrococcus
horikoshii}
Length = 165
Score = 25.3 bits (55), Expect = 7.7
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 80 CRACDKEFTVTRRRHHCRNCG 100
C C ++F+ C +CG
Sbjct: 135 CIGCGRKFSTLPPGGVCPDCG 155
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA;
metallochaperone, metal-binding, metal- binding protein;
NMR {Helicobacter pylori}
Length = 119
Score = 24.7 bits (54), Expect = 8.1
Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 1/22 (4%)
Query: 80 CRACDKEFTVTRRRHH-CRNCG 100
C+ C F + C C
Sbjct: 76 CKDCSHVFKPNALDYGVCEKCH 97
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal
binding site, structura genomics, PSI, protein structure
initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Length = 105
Score = 24.5 bits (53), Expect = 9.7
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
Query: 40 EELGAQLSKSKLQVSDLMEEHQIAKRATEAQWAKDKEAI--TCRACDKEFTVTRRRHHCR 97
E++ L + S+L + + ++ +D + I + + + CR
Sbjct: 14 EKIIELLLEGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKREGMVLLIKPAQ--CR 71
Query: 98 NCGEIFCNMCSDNKMALPSAAKPVRVCDEC 127
CG +F ++ +PS C +C
Sbjct: 72 KCGFVF-----KAEINIPSR------CPKC 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.128 0.375
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,093,150
Number of extensions: 113734
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 90
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)