RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1895
(140 letters)
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 73.2 bits (179), Expect = 5e-19
Identities = 35/61 (57%), Positives = 38/61 (62%)
Query: 71 WAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVK 130
WA+D E C AC K F+VT RRHHCR CG IFC CS PS+ KPVRVCD C
Sbjct: 2 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFND 61
Query: 131 L 131
L
Sbjct: 62 L 62
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 70.1 bits (171), Expect = 2e-17
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 80 CRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAA-KPVRVCDECNVKLVEK 134
C C +FT+ ++ + C+NCG FCN C +P A +VC +C+ L
Sbjct: 12 CYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 66.2 bits (161), Expect = 4e-16
Identities = 30/67 (44%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 67 TEAQWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAA--KPVRVC 124
T WA + C C EFT T R+HHCRNCG++FC C+ + LP K VRVC
Sbjct: 6 TAPNWADGRV---CHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVC 62
Query: 125 DECNVKL 131
D C L
Sbjct: 63 DGCFAAL 69
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 67
Score = 62.3 bits (151), Expect = 1e-14
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 70 QWAKDKEAITCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAA--KPVRVCDEC 127
W C C K+F++ R+HHCR+CG +FC S N + LP +PVRVCD C
Sbjct: 1 DWIDSDA---CMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSC 57
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 58.4 bits (141), Expect = 2e-13
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 79 TCRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDEC 127
+C++C F T R+ C +C + FC CS R+C C
Sbjct: 2 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG------NGPRLCLLC 44
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 52.0 bits (124), Expect = 3e-10
Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 8/98 (8%)
Query: 36 ELALEELGAQLSKSKLQVSDLMEEHQIAKRATEA-----QWAKDKEAITCRACDKEFT-V 89
EL EE E + R + + C C ++ +
Sbjct: 2 ELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGML 61
Query: 90 TRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDEC 127
C +C + C C + PV +C C
Sbjct: 62 GSASVVCEDCKKNVCTKCGVETS--NNRPHPVWLCKIC 97
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 28.2 bits (63), Expect = 0.068
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 79 TCRACDKEFTVTRRRHHCRNCGEIFCNMC 107
C C E + + C C +FC C
Sbjct: 17 FCYGCQGELK-DQHVYVCAVCQNVFCVDC 44
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 24.9 bits (54), Expect = 1.8
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 76 EAITCRACDKEFTVTRRRHHCRNCGEI-FCNMCSDNK 111
I C C + + + C C E C C D+
Sbjct: 23 LGIPCNNCKQFPIEG-KCYKCTECIEYHLCQECFDSY 58
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK,
insert "zinc finger" domain {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 35
Score = 23.8 bits (52), Expect = 2.0
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 93 RHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132
R CRNCG + + + P A VCD+C +L
Sbjct: 2 RRICRNCGATY------HLIFHPPAKPG--VCDKCGGELY 33
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 102
Score = 24.6 bits (53), Expect = 2.6
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 80 CRACDKEFTVTRRRHHCRNCGEIFCNMCSDNKMAL 114
C C K + CR CG + C S +K A
Sbjct: 21 CEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHAT 55
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK,
insert "zinc finger" domain {Bacillus globisporus
[TaxId: 1459]}
Length = 35
Score = 23.4 bits (51), Expect = 2.7
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 8/40 (20%)
Query: 93 RHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNVKLV 132
R C+ CG + + + P + CD+ +L
Sbjct: 2 RRICKVCGTSY------HLLFNPPQVEG--KCDKDGGELY 33
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3,
ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 69
Score = 23.5 bits (50), Expect = 4.2
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 76 EAITCRACDKEFTVTRRRHHCRNCGEI----FCNMCSDN 110
C C E R HC++C FC+ CSD
Sbjct: 13 VGFKCDNCGIEPIQG-VRWHCQDCPPEMSLDFCDSCSDC 50
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia
coli [TaxId: 562]}
Length = 71
Score = 23.3 bits (50), Expect = 6.0
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 5/36 (13%)
Query: 77 AITCRACDKEFTVTRRRHHCRNCG-----EIFCNMC 107
+ C C CR+CG + C C
Sbjct: 2 ELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDC 37
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 24.0 bits (51), Expect = 8.2
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 86 EFTVTRRRHHCRNCGEIFCNMCSDNKMALPSAAKPVRVCDECNV 129
E + + C +CG + N S AL P + ++
Sbjct: 121 EIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASI 164
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 22.5 bits (47), Expect = 8.6
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 73 KDKEAITCRACDKEFT-VTRRRHHCRNCGEIFCNMCSD 109
+D++ C C++E R C E C
Sbjct: 2 EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLS 39
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 22.5 bits (48), Expect = 9.5
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 80 CRACDKEFTVTRRRHHCRNCGEIFCNMC 107
C C K T + EI+C C
Sbjct: 2 CMVCKKNLDSTT---VAVHGDEIYCKSC 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.128 0.375
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 509,571
Number of extensions: 22757
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 45
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.8 bits)