BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1896
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 6 GASMVVNFLNDLYTLFDRII---KGYDVYKVETIGDAYMV 42
GA +VN LNDLYT FD + K VYKVET+GD YM
Sbjct: 35 GAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMT 74
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 23/34 (67%)
Query: 9 MVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMV 42
V+ LN LYT FD+ DVYKVETIGDAY V
Sbjct: 36 QVITMLNALYTRFDQQCGELDVYKVETIGDAYCV 69
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 10 VVNFLNDLYTLFDRIIKGY-DVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYR 68
V + L++LY FD I+ Y +YKVETIGDAYMV C V + C + + +
Sbjct: 32 VXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVC-------NVTVPCDDHADVLLEFA 84
Query: 69 MRKKDEGS---YALEEPKR 84
+R +E S +L EP R
Sbjct: 85 LRMHEEASRVASSLGEPVR 103
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 10 VVNFLNDLYTLFDRIIKGY-DVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYR 68
V + L++LY FD I+ Y +YKVETIGDAYMV C V + C + + +
Sbjct: 32 VXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVC-------NVTVPCDDHADVLLEFA 84
Query: 69 MRKKDEGS---YALEEPKR 84
+R +E S +L EP R
Sbjct: 85 LRMHEEASRVASSLGEPVR 103
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 6 GASMVVNFLNDLYTLFDRII---KGYDVYKVETIGDAYMV 42
GA +VN LNDLYT FD + K VYKVET+ D YM
Sbjct: 36 GAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVCDKYMT 75
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 4 ATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMV 42
+T + +V FL+ LY+ FD ++ + + K+E GD+YMV
Sbjct: 27 STAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMV 65
>pdb|2UUW|A Chain A, 2.75 Angstrom Structure Of The D347g D348g Mutant
Structure Of Sapporo Virus Rdrp Polymerase
pdb|2WK4|A Chain A, Dimeric Structure Of D347g D348g Mutant Of The
Sapporovirus Rna Dependent Rna Polymerase
pdb|2WK4|B Chain B, Dimeric Structure Of D347g D348g Mutant Of The
Sapporovirus Rna Dependent Rna Polymerase
Length = 515
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 10 VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMF 64
VVN +N + + I++ Y+ + V G+ + V + GG + +C +F
Sbjct: 307 VVNSINHMIYVAAAILQAYESHNVPYTGNVFQVETIHTYGGGCMYSVCPATASIF 361
>pdb|1FX4|A Chain A, Structure Analysis Of Adenylate Cyclases From
Trypanosoma Brucei In Their Monomeric State
Length = 231
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 18 YTLFDRIIKGYDVYKVETIGDAYMV 42
+ L +I Y+ Y+V+T+GD++M+
Sbjct: 42 HRLIRSLITRYECYEVKTVGDSFMI 66
>pdb|1EJP|A Chain A, Solution Structure Of The Syndecan-4 Whole Cytoplasmic
Domain
pdb|1EJP|B Chain B, Solution Structure Of The Syndecan-4 Whole Cytoplasmic
Domain
pdb|1EJQ|A Chain A, Solution Structure Of The Syndecan-4 Whole Cytoplasmic
Domain In The Presence Of Phosphatidylinositol 4,5-
Bisphosphate
pdb|1EJQ|B Chain B, Solution Structure Of The Syndecan-4 Whole Cytoplasmic
Domain In The Presence Of Phosphatidylinositol 4,5-
Bisphosphate
Length = 28
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 68 RMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 101
RM+KKDEGSY L + P Y K EFYA
Sbjct: 1 RMKKKDEGSYDLG---KKPI---YKKAPTNEFYA 28
>pdb|2UUT|A Chain A, The 2.4 Angstrom Resolution Structure Of The D346g Mutant
Of The Sapporo Virus Rdrp Polymerase
Length = 508
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 10 VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMF 64
VVN +N + + I++ Y+ + V G+ + V + GG + +C +F
Sbjct: 307 VVNSINHMIYVAAAILQAYESHNVPYTGNVFQVETIHTYGGDCMYSVCPATASIF 361
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 28 YDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFI 65
+ V + T+G MV IGG +VG LCAI V+ I
Sbjct: 367 WAVVSMTTVGYGDMVP--TTIGGKIVGSLCAIAGVLTI 402
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 28 YDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFI 65
+ V + T+G MV IGG +VG LCAI V+ I
Sbjct: 367 WAVVSMTTVGYGDMVP--TTIGGKIVGSLCAIAGVLTI 402
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 28 YDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFI 65
+ V + T+G MV IGG +VG LCAI V+ I
Sbjct: 382 WAVVSMTTVGYGDMVP--TTIGGKIVGSLCAIAGVLTI 417
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 28 YDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFI 65
+ V + T+G MV IGG +VG LCAI V+ I
Sbjct: 382 WAVVSMTTVGYGDMVP--TTIGGKIVGSLCAIAGVLTI 417
>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of
Multifuctional Enzyme 1 From C.Elegans
Length = 460
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 35 TIGDAYMVNCLAVIGGAVVGLLCAI 59
T +AY VN +A+IGG +G AI
Sbjct: 47 TNSEAYDVNSVAIIGGGTMGKAMAI 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,780,505
Number of Sequences: 62578
Number of extensions: 97139
Number of successful extensions: 349
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 16
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)