Query psy1896
Match_columns 101
No_of_seqs 152 out of 891
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 19:00:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4171|consensus 99.7 9.5E-18 2.1E-22 142.5 7.2 77 4-85 459-537 (671)
2 PF01034 Syndecan: Syndecan do 99.7 9.4E-19 2E-23 110.3 0.5 53 45-99 12-64 (64)
3 KOG1023|consensus 99.4 2.2E-13 4.8E-18 113.0 2.4 65 4-72 313-377 (484)
4 KOG3619|consensus 99.2 1.2E-11 2.6E-16 108.2 5.5 68 4-71 671-746 (867)
5 KOG3618|consensus 99.2 8.3E-12 1.8E-16 108.7 4.1 46 4-49 357-402 (1318)
6 KOG3619|consensus 99.0 4.3E-10 9.2E-15 98.6 7.1 46 4-49 129-174 (867)
7 PF00211 Guanylate_cyc: Adenyl 98.8 3E-08 6.5E-13 70.0 7.3 62 5-71 26-87 (184)
8 KOG3618|consensus 98.8 2.7E-09 5.8E-14 93.4 2.2 66 6-71 1104-1174(1318)
9 smart00044 CYCc Adenylyl- / gu 98.4 3.5E-06 7.5E-11 60.2 8.4 64 4-71 53-116 (194)
10 cd07302 CHD cyclase homology d 98.3 4.8E-06 1E-10 56.9 8.0 45 5-49 19-63 (177)
11 COG2114 CyaA Adenylate cyclase 98.1 2E-05 4.2E-10 58.9 8.0 63 4-71 63-125 (227)
12 smart00294 4.1m putative band 96.8 0.00026 5.6E-09 37.5 -0.2 19 67-85 2-20 (26)
13 KOG3514|consensus 93.8 0.054 1.2E-06 49.9 3.1 51 50-100 1516-1590(1591)
14 PF01025 GrpE: GrpE; InterPro 87.4 0.9 2E-05 32.0 3.7 34 7-40 87-120 (165)
15 PRK14147 heat shock protein Gr 83.0 2 4.2E-05 31.6 3.8 34 7-40 92-125 (172)
16 cd00446 GrpE GrpE is the adeni 81.1 2.7 5.9E-05 29.1 3.8 33 7-39 61-93 (137)
17 PRK14139 heat shock protein Gr 80.6 2.5 5.5E-05 31.5 3.7 34 7-40 106-139 (185)
18 PRK14144 heat shock protein Gr 79.3 2.8 6.1E-05 31.7 3.6 33 8-40 121-153 (199)
19 PRK14151 heat shock protein Gr 79.0 3.1 6.7E-05 30.7 3.7 33 8-40 98-130 (176)
20 PRK10325 heat shock protein Gr 78.7 3.1 6.8E-05 31.1 3.7 34 7-40 116-149 (197)
21 PRK14140 heat shock protein Gr 77.6 3.7 8.1E-05 30.7 3.8 33 8-40 114-146 (191)
22 PRK14145 heat shock protein Gr 77.3 4 8.8E-05 30.7 3.9 34 7-40 118-151 (196)
23 PRK14153 heat shock protein Gr 76.9 4.1 8.9E-05 30.6 3.9 34 7-40 109-142 (194)
24 PRK14162 heat shock protein Gr 76.3 4 8.8E-05 30.6 3.7 33 8-40 116-148 (194)
25 PRK14150 heat shock protein Gr 74.6 4.7 0.0001 30.1 3.6 33 8-40 116-148 (193)
26 PRK14146 heat shock protein Gr 73.6 5.1 0.00011 30.5 3.7 33 8-40 131-163 (215)
27 PRK14163 heat shock protein Gr 73.0 4.5 9.8E-05 30.9 3.3 32 9-40 111-142 (214)
28 PRK14158 heat shock protein Gr 72.5 6.1 0.00013 29.7 3.8 34 7-40 115-149 (194)
29 PRK14143 heat shock protein Gr 72.0 5.5 0.00012 30.8 3.6 33 8-40 145-177 (238)
30 PRK14141 heat shock protein Gr 71.0 6.3 0.00014 30.0 3.6 33 8-40 114-146 (209)
31 COG2429 Archaeal GTP cyclohydr 70.4 13 0.00029 29.0 5.4 56 5-60 150-205 (250)
32 PRK14157 heat shock protein Gr 68.6 4.9 0.00011 31.0 2.6 28 13-40 152-179 (227)
33 PRK14164 heat shock protein Gr 68.2 5.2 0.00011 30.6 2.7 27 14-40 147-173 (218)
34 PRK14148 heat shock protein Gr 66.5 9.4 0.0002 28.7 3.7 33 8-40 117-149 (195)
35 COG3427 Carbon monoxide dehydr 65.6 8.8 0.00019 27.8 3.3 43 2-48 8-51 (146)
36 PRK14142 heat shock protein Gr 65.2 6.4 0.00014 30.3 2.7 27 14-40 110-136 (223)
37 PRK14155 heat shock protein Gr 65.1 9.4 0.0002 28.9 3.5 33 8-40 93-126 (208)
38 PRK14161 heat shock protein Gr 58.6 17 0.00036 26.9 3.8 33 8-40 98-131 (178)
39 COG0576 GrpE Molecular chapero 57.7 16 0.00035 27.1 3.6 32 9-40 115-146 (193)
40 PRK14149 heat shock protein Gr 56.6 18 0.0004 27.1 3.8 31 7-37 112-142 (191)
41 COG0056 AtpA F0F1-type ATP syn 54.6 22 0.00048 30.5 4.3 46 3-48 1-46 (504)
42 PF14056 DUF4250: Domain of un 54.6 3.4 7.5E-05 25.2 -0.3 38 3-40 1-48 (55)
43 PRK14154 heat shock protein Gr 54.3 20 0.00043 27.3 3.7 33 8-40 130-163 (208)
44 PRK14159 heat shock protein Gr 51.0 23 0.00049 26.2 3.4 30 8-37 100-129 (176)
45 PRK14160 heat shock protein Gr 49.6 27 0.0006 26.5 3.8 31 7-37 134-164 (211)
46 PF07765 KIP1: KIP1-like prote 47.0 28 0.00062 22.5 3.0 21 9-29 54-74 (74)
47 KOG3003|consensus 46.3 27 0.00058 27.3 3.3 33 8-40 154-186 (236)
48 PF10664 NdhM: Cyanobacterial 41.4 27 0.00058 24.1 2.4 18 12-29 42-59 (108)
49 TIGR00190 thiC thiamine biosyn 40.6 39 0.00084 28.5 3.6 67 15-86 199-268 (423)
50 cd07556 Nucleotidyl_cyc_III Cl 38.0 1E+02 0.0022 19.2 8.0 41 5-45 19-59 (133)
51 PRK14828 undecaprenyl pyrophos 36.5 95 0.0021 24.1 5.0 36 5-41 87-122 (256)
52 PF01102 Glycophorin_A: Glycop 35.4 34 0.00074 23.9 2.2 24 50-73 72-95 (122)
53 PRK13352 thiamine biosynthesis 35.0 53 0.0012 27.7 3.6 67 15-86 202-271 (431)
54 PF01964 ThiC: ThiC family; I 34.9 38 0.00083 28.5 2.7 67 15-86 198-267 (420)
55 COG4030 Uncharacterized protei 34.2 19 0.00041 28.7 0.8 34 4-38 155-189 (315)
56 KOG0969|consensus 30.0 46 0.00099 30.7 2.6 15 63-77 864-878 (1066)
57 PF12668 DUF3791: Protein of u 28.8 13 0.00028 22.5 -0.8 38 2-42 14-51 (62)
58 PRK09284 thiamine biosynthesis 28.8 77 0.0017 27.9 3.7 69 15-86 352-421 (607)
59 PF09061 Stirrup: Stirrup; In 28.8 1.2E+02 0.0027 19.4 3.8 28 17-45 8-35 (79)
60 PF06198 DUF999: Protein of un 27.8 80 0.0017 22.4 3.0 25 3-27 48-72 (143)
61 cd00475 CIS_IPPS Cis (Z)-Isopr 27.3 1.4E+02 0.0031 22.6 4.6 37 4-41 59-98 (221)
62 cd06246 M14_CPB2 Peptidase M14 27.1 82 0.0018 24.8 3.3 28 14-41 8-36 (300)
63 PF07927 YcfA: YcfA-like prote 25.4 1.1E+02 0.0024 17.4 2.9 27 18-44 1-27 (56)
64 PLN02444 HMP-P synthase 25.4 97 0.0021 27.4 3.7 69 15-86 357-426 (642)
65 TIGR00135 gatC glutamyl-tRNA(G 24.9 1.3E+02 0.0027 19.3 3.4 25 2-26 14-41 (93)
66 cd03872 M14_CPA6 Carboxypeptid 23.9 97 0.0021 24.5 3.2 28 14-41 5-33 (300)
67 PF13405 EF-hand_6: EF-hand do 22.1 60 0.0013 16.3 1.2 10 14-23 2-11 (31)
68 PTZ00458 acyl CoA binding prot 21.5 22 0.00049 23.5 -0.7 20 22-41 24-43 (90)
69 PRK14833 undecaprenyl pyrophos 21.2 2.2E+02 0.0047 21.8 4.6 37 4-41 63-102 (233)
70 COG0435 ECM4 Predicted glutath 21.1 87 0.0019 25.4 2.4 19 3-21 142-160 (324)
71 PRK10240 undecaprenyl pyrophos 21.0 2.4E+02 0.0052 21.5 4.8 37 4-41 52-91 (229)
72 PRK14841 undecaprenyl pyrophos 20.8 2.5E+02 0.0053 21.6 4.8 37 4-41 62-101 (233)
73 PF02541 Ppx-GppA: Ppx/GppA ph 20.5 3.8E+02 0.0082 20.2 6.0 45 11-60 37-81 (285)
74 PF05165 GGDN: GGDN family; I 20.4 4.3E+02 0.0092 20.7 6.4 41 5-45 146-186 (246)
75 PRK14831 undecaprenyl pyrophos 20.4 1.5E+02 0.0033 22.9 3.6 36 5-41 80-118 (249)
76 COG0422 ThiC Thiamine biosynth 20.3 1.3E+02 0.0028 25.4 3.3 60 15-76 200-260 (432)
77 cd06247 M14_CPO Peptidase M14 20.2 1.2E+02 0.0026 23.9 3.0 27 14-40 7-34 (298)
78 cd03870 M14_CPA Peptidase M14 20.1 1.3E+02 0.0029 23.6 3.3 28 14-41 9-37 (301)
No 1
>KOG4171|consensus
Probab=99.72 E-value=9.5e-18 Score=142.46 Aligned_cols=77 Identities=42% Similarity=0.439 Sum_probs=68.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhh--cccCcccCCC
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRK--KDEGSYALEE 81 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrk--k~egsy~~~~ 81 (101)
.++|.+||++||+||++||++++-|+|||||||||+||+|+|+|-.. ..|+..++++|++|+. |..-++..++
T Consensus 459 ~ctp~~vV~~LN~lyt~fD~~i~~~~VYKVETIGDaYm~vsG~P~~~-----~~HAe~i~~~AL~Mm~~ak~v~~p~~~~ 533 (671)
T KOG4171|consen 459 QCTPMQVVNMLNELYTRFDRIIDTHDVYKVETIGDAYMVVSGLPDAS-----DYHAEHIADLALGMMEEAKEVVSPVTGE 533 (671)
T ss_pred ccCcHHHHHHHHHHHHHHHHhhcccCeEEEeeccchheeecCCCCCC-----hhHHHHHHHHHHHHHHHhhhhcCcCCCC
Confidence 57899999999999999999999999999999999999999887754 5899999999999998 6666666677
Q ss_pred CCCC
Q psy1896 82 PKRS 85 (101)
Q Consensus 82 p~~~ 85 (101)
|.+.
T Consensus 534 pi~i 537 (671)
T KOG4171|consen 534 PIQI 537 (671)
T ss_pred ceEE
Confidence 7653
No 2
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=99.72 E-value=9.4e-19 Score=110.32 Aligned_cols=53 Identities=62% Similarity=1.039 Sum_probs=7.8
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHhhhcccCcccCCCCCCCCCCcccccCCcccc
Q psy1896 45 LAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREF 99 (101)
Q Consensus 45 g~~iag~~v~ll~ai~~I~~fAl~Mrkk~egsy~~~~p~~~~~~~~~~~~~~~e~ 99 (101)
++.|+|.+++++++++.|+++++|||+||||||+++|||+++ ++|||+||+||
T Consensus 12 aavIaG~Vvgll~ailLIlf~iyR~rkkdEGSY~l~e~K~s~--~~Y~k~~~~ef 64 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILFLIYRMRKKDEGSYDLDEPKPSN--YAYQKAPTKEF 64 (64)
T ss_dssp -------------------------S------SS--S-------------SSS-E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCccc--cccccCCcCCC
Confidence 566888999999999999999999999999999999999874 57999999998
No 3
>KOG1023|consensus
Probab=99.36 E-value=2.2e-13 Score=112.98 Aligned_cols=65 Identities=45% Similarity=0.553 Sum_probs=58.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhhc
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRKK 72 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrkk 72 (101)
..+|.+||.+||++|+.||.++++|++|||+||||+||++||+|+-.. ..|+..|+.+++.++..
T Consensus 313 ~~~P~~vv~~lNdlyt~Fd~ii~~~d~yKVetiGDaYmvvSglp~~n~----~~H~~eia~msl~~~~~ 377 (484)
T KOG1023|consen 313 NSTPIQVVTLLNDLYTTFDRIIDKHDVYKVETIGDAYMVVSGLPIRNG----YRHAREIASMALGLRSF 377 (484)
T ss_pred cCCCceeeeeccchHHhhhhcccccCCeeEeccCcceeecccCceecH----hHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999988542 23999999999998884
No 4
>KOG3619|consensus
Probab=99.22 E-value=1.2e-11 Score=108.23 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhh--hc-CeeEEEEeCCeeeeeehhhhcc-----chhhHHHHHHHHHHHHHHhhh
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIK--GY-DVYKVETIGDAYMVNCLAVIGG-----AVVGLLCAILVVMFIVYRMRK 71 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~--~~-~v~Ki~TIGd~Ym~~~g~~iag-----~~v~ll~ai~~I~~fAl~Mrk 71 (101)
.....|++++||+++++||+|++ ++ +|+||||||.+||||+|+.... .....+.|+..+++||++|+.
T Consensus 671 NneGlECLRlLNEIIaDFDeLL~~pkF~~IEKIKTIGSTYMAAsGL~~~~~~~~~~~~~~~~h~~~l~eFAlal~~ 746 (867)
T KOG3619|consen 671 NNEGLECLRLLNEIIADFDELLSKPKFSGVEKIKTIGSTYMAASGLNPTSAQENDQSLRQWSHLGALVEFALALMH 746 (867)
T ss_pred CcccchHHHHHHHHHhhHHHhcCccccccceeEEEecchhhhhhCCChhhhhccCcchhHHhhHHHHHHHHHHHHH
Confidence 34578999999999999999998 44 7999999999999999986632 233678999999999999988
No 5
>KOG3618|consensus
Probab=99.21 E-value=8.3e-12 Score=108.74 Aligned_cols=46 Identities=30% Similarity=0.418 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhc
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIG 49 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~ia 49 (101)
..+++++|.+||+||.+||+||+.-|||||.|+||||.||+|.|..
T Consensus 357 nKsA~~LV~lLNDLFgRFD~LC~l~gcEKISTLGDCYYCVaGCPEP 402 (1318)
T KOG3618|consen 357 NKSAHALVGLLNDLFGRFDRLCELTGCEKISTLGDCYYCVAGCPEP 402 (1318)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCcchhccccceeeeecCCCCC
Confidence 3589999999999999999999999999999999999999998874
No 6
>KOG3619|consensus
Probab=99.05 E-value=4.3e-10 Score=98.62 Aligned_cols=46 Identities=24% Similarity=0.418 Sum_probs=43.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhc
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIG 49 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~ia 49 (101)
.+|++|+|++||+||++||+++++++|.+||.+||||.|++|+|..
T Consensus 129 ~~saqelv~~LneLf~rfd~lA~~~~clRiKiLGdcyyCvsglp~~ 174 (867)
T KOG3619|consen 129 QCSAQELVKVLNELFARFDRLAAENHCLRIKILGDCYYCVSGLPEA 174 (867)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcceEeeeeecceeEEecCCCCC
Confidence 4789999999999999999999999999999999999999999863
No 7
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=98.78 E-value=3e-08 Score=69.97 Aligned_cols=62 Identities=21% Similarity=0.158 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhh
Q psy1896 5 TGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRK 71 (101)
Q Consensus 5 ~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrk 71 (101)
.+|++++++||++|+.||+++++|++++++++||+||++.+.+. ....|+...+.++++|.+
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~Gd~~~~~f~~~~-----~~~~~~~~a~~~al~~~~ 87 (184)
T PF00211_consen 26 LDPEELVRLLNDFFSSLDRIVKQHGGEIIKFIGDGVMAVFGLPE-----PDEDAAERAVQFALALLE 87 (184)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEETTEEEEEESSSS-----CHCHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHhhhccccccccccccccceeEEEecccc-----ccccccccccccccchhh
Confidence 45899999999999999999999999999999999999988772 222344445555555544
No 8
>KOG3618|consensus
Probab=98.77 E-value=2.7e-09 Score=93.44 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhc---CeeEEEEeCCeeeeeehhhhc--cchhhHHHHHHHHHHHHHHhhh
Q psy1896 6 GASMVVNFLNDLYTLFDRIIKGY---DVYKVETIGDAYMVNCLAVIG--GAVVGLLCAILVVMFIVYRMRK 71 (101)
Q Consensus 6 ~p~evv~lLn~lf~~FD~l~~~~---~v~Ki~TIGd~Ym~~~g~~ia--g~~v~ll~ai~~I~~fAl~Mrk 71 (101)
...|..+.|||++.+||+|+++- .+|||||||.+|||++|+.++ +.-.+--.|+..+.+||..|++
T Consensus 1104 GGkEflRVLNElIGDFDELLsrPdf~~iEKIKTIG~tyMAASGLnp~~~~~~~hp~EHl~~l~eFa~amq~ 1174 (1318)
T KOG3618|consen 1104 GGKEFLRVLNELIGDFDELLSRPDFSSIEKIKTIGATYMAASGLNPAQAQDGSHPQEHLQILFEFAKAMQR 1174 (1318)
T ss_pred chHHHHHHHHHHhccHHHHhccccchhhHHHhhhhHHHHHhcCCChHHccCCCChHHHHHHHHHHHHHHHH
Confidence 46799999999999999999984 499999999999999998764 3334566899999999999987
No 9
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=98.35 E-value=3.5e-06 Score=60.23 Aligned_cols=64 Identities=38% Similarity=0.426 Sum_probs=52.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhh
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRK 71 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrk 71 (101)
+.+|.+++.+||.+|..+++++.+||.+.++++||++|++.+.+.... ..|+...+..++++++
T Consensus 53 ~~~~~~~~~~l~~~~~~~~~~i~~~gg~v~~~~Gd~~l~~F~~~~~~~----~~~a~~a~~~al~l~~ 116 (194)
T smart00044 53 EATPEQVVTLLNDLYSRFDRIIDRHGGYKVKTIGDAYMVVSGLPTEAL----VDHAELAADEALDMVE 116 (194)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeCCEEEEEECCCCCcc----hHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999998766543 3455555566666554
No 10
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=98.31 E-value=4.8e-06 Score=56.86 Aligned_cols=45 Identities=31% Similarity=0.346 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhc
Q psy1896 5 TGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIG 49 (101)
Q Consensus 5 ~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~ia 49 (101)
.++++++.+||.++..+++++.+|+.+++++.||++|++.+.+..
T Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~gd~~~~~f~~~~~ 63 (177)
T cd07302 19 LGPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMAVFGLPGA 63 (177)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCceEEEEeCCCCC
Confidence 379999999999999999999999999999999999999876553
No 11
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=98.09 E-value=2e-05 Score=58.91 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhh
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRK 71 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrk 71 (101)
+.+|..+..+||..|..++.++.+||...+|+|||++|++-|.|.... .++..+..++++|++
T Consensus 63 ~~~~~~~~~ll~~~~~~~~~~v~~~gG~v~k~iGD~~la~F~~p~~~~-----~A~~~a~~~~~~~~~ 125 (227)
T COG2114 63 SLGDEALVELLNLYFDAVAEVVARHGGRVVKFIGDGFLAVFGRPSPLE-----DAVACALDLQLALRN 125 (227)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecceEEEEeCCCCCcH-----HHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999998877543 333323335556655
No 12
>smart00294 4.1m putative band 4.1 homologues' binding motif.
Probab=96.82 E-value=0.00026 Score=37.50 Aligned_cols=19 Identities=53% Similarity=0.973 Sum_probs=16.6
Q ss_pred HHhhhcccCcccCCCCCCC
Q psy1896 67 YRMRKKDEGSYALEEPKRS 85 (101)
Q Consensus 67 l~Mrkk~egsy~~~~p~~~ 85 (101)
++|++||||||.++||+..
T Consensus 2 yry~~R~kGSY~t~E~kg~ 20 (26)
T smart00294 2 YRYKHRDEGSYHTHEPKGX 20 (26)
T ss_pred cEEEecccCceEcCCCCCc
Confidence 5789999999999999744
No 13
>KOG3514|consensus
Probab=93.80 E-value=0.054 Score=49.94 Aligned_cols=51 Identities=37% Similarity=0.802 Sum_probs=33.2
Q ss_pred cchhhHHHHHHH----HHHHHHHhhhcccCcccCCC-----------------CCC---CCCCcccccCCccccc
Q psy1896 50 GAVVGLLCAILV----VMFIVYRMRKKDEGSYALEE-----------------PKR---SPASNSYMKNSNREFY 100 (101)
Q Consensus 50 g~~v~ll~ai~~----I~~fAl~Mrkk~egsy~~~~-----------------p~~---~~~~~~~~~~~~~e~y 100 (101)
|++++++.++.+ ++-..+.-|++|||||..++ |++ +.+.+.-+|+++||||
T Consensus 1516 GmVvGIvaAaaLcILilL~am~kyRnrdEGSYhvd~srnyisNsaqsNG~~~kek~~~~~k~~~K~~knKDKEyY 1590 (1591)
T KOG3514|consen 1516 GMVVGIVAAAALCILILLYAMYKYRNRDEGSYHVDESRNYISNSAQSNGAVGKEKQPMSNKSGNKKKKNKDKEYY 1590 (1591)
T ss_pred chhhHHHHHHHHHHHHHHhhcccccccccCccccccchhhcccccccCCccccccccccCCCccccccccccccc
Confidence 566666665543 33333446779999999876 444 3334556777899999
No 14
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=87.41 E-value=0.9 Score=31.98 Aligned_cols=34 Identities=15% Similarity=0.372 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 7 ASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 7 p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
...+...++-+...|..++.++|+.+|.+.|+.|
T Consensus 87 ~~~~~~g~~~~~~~l~~~L~~~Gv~~i~~~G~~F 120 (165)
T PF01025_consen 87 EESLLEGLEMILKQLEDILEKNGVEEIEPVGEPF 120 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTEEEE--TSSB-
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEecCCCCCCC
Confidence 3567888999999999999999999999999765
No 15
>PRK14147 heat shock protein GrpE; Provisional
Probab=83.01 E-value=2 Score=31.59 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 7 ASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 7 p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
...++.-++-++..|..+++++||.+|.++|+.|
T Consensus 92 ~~~l~~Gv~mi~k~l~~~L~~~Gv~~i~~~G~~F 125 (172)
T PRK14147 92 PSPLRDGLELTYKQLLKVAADNGLTLLDPVGQPF 125 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 3457778888999999999999999999999755
No 16
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=81.12 E-value=2.7 Score=29.12 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCe
Q psy1896 7 ASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDA 39 (101)
Q Consensus 7 p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~ 39 (101)
...+..-++-+++.|..+++++|+.+|...|+.
T Consensus 61 ~~~~~~g~~~i~~~l~~~L~~~Gv~~i~~~g~~ 93 (137)
T cd00446 61 LKNLVEGVEMTLKQLLDVLEKHGVEKIEPEGEP 93 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC
Confidence 456888899999999999999999999999863
No 17
>PRK14139 heat shock protein GrpE; Provisional
Probab=80.61 E-value=2.5 Score=31.49 Aligned_cols=34 Identities=6% Similarity=0.115 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 7 ASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 7 p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
...++.-++-++..|..++++|||.+|.++|+.|
T Consensus 106 ~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~F 139 (185)
T PRK14139 106 LEKLREGVELTLKQLTSAFEKGRVVEINPVGEKF 139 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCceeCCCCCCC
Confidence 3557778888999999999999999999998765
No 18
>PRK14144 heat shock protein GrpE; Provisional
Probab=79.34 E-value=2.8 Score=31.68 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 8 SMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 8 ~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
..++.-+.-++..|..+++++||.+|..+|+.|
T Consensus 121 ~~i~~Gv~mi~k~l~~~L~k~GV~~I~~~G~~F 153 (199)
T PRK14144 121 PSMHEGLELTMKLFLDALQKFDVEQIDPLGQTF 153 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 467888999999999999999999999999765
No 19
>PRK14151 heat shock protein GrpE; Provisional
Probab=79.00 E-value=3.1 Score=30.68 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 8 SMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 8 ~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
..++.-+.-++..|..+++++||.+|.++|+.|
T Consensus 98 ~~~~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~F 130 (176)
T PRK14151 98 KPMREGVELTLKMFQDTLKRYQLEAVDPHGEPF 130 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 457788888999999999999999999998754
No 20
>PRK10325 heat shock protein GrpE; Provisional
Probab=78.68 E-value=3.1 Score=31.12 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 7 ASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 7 p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
...++.-+.-++..|..++.++||.+|+.+|+.|
T Consensus 116 ~~~l~~Gv~m~~~~l~~~L~~~Gv~~i~~~G~~F 149 (197)
T PRK10325 116 MSAMVEGIELTLKSMLDVVRKFGVEVIAETNVPL 149 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCeeeCCCCCCC
Confidence 3567888888999999999999999999999755
No 21
>PRK14140 heat shock protein GrpE; Provisional
Probab=77.64 E-value=3.7 Score=30.74 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 8 SMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 8 ~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
..++.-+.-+++.|..++++||+.+|.++|+.+
T Consensus 114 ~~i~~Gv~mi~k~l~~~L~k~GV~~i~~~Ge~F 146 (191)
T PRK14140 114 KSLLKGVEMVHRQLLEALKKEGVEVIEAVGEQF 146 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEeeCCCCCCC
Confidence 456677788899999999999999999999754
No 22
>PRK14145 heat shock protein GrpE; Provisional
Probab=77.29 E-value=4 Score=30.72 Aligned_cols=34 Identities=18% Similarity=0.414 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 7 ASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 7 p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
...+..-++-+++.|..++.++||.+|.++|+.|
T Consensus 118 ~~~l~~Gv~mi~k~l~~vL~k~GVe~I~~~Ge~F 151 (196)
T PRK14145 118 YNSLKEGIELIYRQFKKILDKFGVKEIEAEGQIF 151 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 3457788889999999999999999999998765
No 23
>PRK14153 heat shock protein GrpE; Provisional
Probab=76.91 E-value=4.1 Score=30.62 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 7 ASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 7 p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
...++.-+.-++..|..+++++||.+|..+|+.+
T Consensus 109 ~~~l~~Gvemi~k~~~~vL~k~Gv~~I~~~G~~F 142 (194)
T PRK14153 109 MNSIVEGIEMVSKQFFSILEKYGLERIECEGEEF 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCC
Confidence 3567777888999999999999999999999865
No 24
>PRK14162 heat shock protein GrpE; Provisional
Probab=76.28 E-value=4 Score=30.63 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 8 SMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 8 ~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
..++.-++-+...|..+++++||.+|..+|+.+
T Consensus 116 ~~l~~Gvemi~k~l~~vL~~~GV~~I~~~G~~F 148 (194)
T PRK14162 116 KQLKKGVQMTLDHLVKALKDHGVTEIKADGEKF 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 467888888999999999999999999998654
No 25
>PRK14150 heat shock protein GrpE; Provisional
Probab=74.59 E-value=4.7 Score=30.08 Aligned_cols=33 Identities=9% Similarity=0.192 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 8 SMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 8 ~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
..++.-+.-++..|..++.+|||.+|..+|+.|
T Consensus 116 ~~~~~Gv~mi~~~l~~~L~~~Gv~~i~~~G~~F 148 (193)
T PRK14150 116 KALIEGVELTLKSLLDTVAKFGVEVVGPVGEPF 148 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCC
Confidence 457788888999999999999999999998755
No 26
>PRK14146 heat shock protein GrpE; Provisional
Probab=73.58 E-value=5.1 Score=30.47 Aligned_cols=33 Identities=12% Similarity=0.282 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 8 SMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 8 ~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
..++.-++-++..|..++++|||.+|..+|+.+
T Consensus 131 ~~l~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~F 163 (215)
T PRK14146 131 KPFVEGVKMILKEFYSVLEKSNVIRFDPKGEPF 163 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHCcCeeeCCCCCCC
Confidence 557788889999999999999999999999755
No 27
>PRK14163 heat shock protein GrpE; Provisional
Probab=72.95 E-value=4.5 Score=30.90 Aligned_cols=32 Identities=6% Similarity=0.186 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 9 MVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 9 evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
.++.-++-++..|..++++|||.+|..+|+.|
T Consensus 111 ~l~~Gv~mi~k~l~~~L~k~Gv~~I~~~G~~F 142 (214)
T PRK14163 111 ELVGGFKSVAESLETTVAKLGLQQFGKEGEPF 142 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 46777888999999999999999999999755
No 28
>PRK14158 heat shock protein GrpE; Provisional
Probab=72.55 E-value=6.1 Score=29.69 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCeeEEEE-eCCee
Q psy1896 7 ASMVVNFLNDLYTLFDRIIKGYDVYKVET-IGDAY 40 (101)
Q Consensus 7 p~evv~lLn~lf~~FD~l~~~~~v~Ki~T-IGd~Y 40 (101)
...++.-+.-++..|..+++++||.+|.+ +|+.|
T Consensus 115 ~~~i~~Gv~mi~k~l~~vLek~Gv~~I~~~~G~~F 149 (194)
T PRK14158 115 MSAIIEGIRMTLSMLLSTLKKFGVTPVEAEKGTPF 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 35688888899999999999999999996 78754
No 29
>PRK14143 heat shock protein GrpE; Provisional
Probab=71.97 E-value=5.5 Score=30.78 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 8 SMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 8 ~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
..+...++-++..|..++.+|||.+|..+|+.|
T Consensus 145 ~~l~~Gve~i~k~l~~~L~k~GV~~i~~~G~~F 177 (238)
T PRK14143 145 QALHRSYQGLYKQLVDVLKRLGVSPMRVVGQEF 177 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCC
Confidence 456777888999999999999999999999754
No 30
>PRK14141 heat shock protein GrpE; Provisional
Probab=71.00 E-value=6.3 Score=29.96 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 8 SMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 8 ~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
..++.-+.-++..|..++++|||.+|..+|+.|
T Consensus 114 ~~l~eGv~mi~k~l~~vLek~GV~~I~~~Ge~F 146 (209)
T PRK14141 114 KALIEGVEMTERAMLNALERHGVKKLDPEGQKF 146 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
Confidence 457777788899999999999999999999654
No 31
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=70.45 E-value=13 Score=29.04 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhccchhhHHHHHH
Q psy1896 5 TGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAIL 60 (101)
Q Consensus 5 ~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~ 60 (101)
.+|-......+.++...++-+.++|+--.-.=||-||++|-...+|.+.+...+++
T Consensus 150 ~~~~~t~~~I~~~~~~L~~~l~k~gal~fflGGDN~ma~~p~~s~g~v~d~i~~v~ 205 (250)
T COG2429 150 VSPYDTYTEIQRVYATLMRFLEKIGALLFFLGGDNIMAVCPGLSAGDVLDAIAEVL 205 (250)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCcEEEEecCcceEEECCCCCchhHHHHHHHHH
Confidence 46777888999999999999999997766677999999986665555555555554
No 32
>PRK14157 heat shock protein GrpE; Provisional
Probab=68.59 E-value=4.9 Score=31.00 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 13 FLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 13 lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
.+.-++..|..++++|||++|..+|+.|
T Consensus 152 ~~~~i~k~l~~vL~k~GVe~I~~~Ge~F 179 (227)
T PRK14157 152 SFKAVAAKIDKAFEKFGVEKFGEKGEDF 179 (227)
T ss_pred HHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 3456788999999999999999998765
No 33
>PRK14164 heat shock protein GrpE; Provisional
Probab=68.15 E-value=5.2 Score=30.59 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 14 LNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 14 Ln~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
|+.+...|-.++++|||.+|..+|+.|
T Consensus 147 l~~i~~~l~~vL~k~Gve~I~~~Ge~F 173 (218)
T PRK14164 147 LKAFSDKLTNVLAGLKVEKFGEEGDAF 173 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 455778899999999999999998765
No 34
>PRK14148 heat shock protein GrpE; Provisional
Probab=66.53 E-value=9.4 Score=28.70 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 8 SMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 8 ~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
..++.-+.-+++.|..+++++|+.+|.++|+.+
T Consensus 117 ~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~F 149 (195)
T PRK14148 117 IAMKEGIELTAKMLVDILKKNGVEELDPKGEKF 149 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 457777888899999999999999999998754
No 35
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=65.56 E-value=8.8 Score=27.75 Aligned_cols=43 Identities=35% Similarity=0.423 Sum_probs=34.8
Q ss_pred CccCCHHHHHHHHHHHHHHHHHhhhh-cCeeEEEEeCCeeeeeehhhh
Q psy1896 2 RIATGASMVVNFLNDLYTLFDRIIKG-YDVYKVETIGDAYMVNCLAVI 48 (101)
Q Consensus 2 ~~s~~p~evv~lLn~lf~~FD~l~~~-~~v~Ki~TIGd~Ym~~~g~~i 48 (101)
|++.+|++|..+||+ .+.+... -||..+++.||.|-|..-+.+
T Consensus 8 ~V~~p~e~Vw~~L~d----pe~~a~ciPG~qs~e~~g~e~~~~v~l~i 51 (146)
T COG3427 8 RVAAPPEAVWEFLND----PEQVAACIPGVQSVETNGDEYTAKVKLKI 51 (146)
T ss_pred EecCCHHHHHHHhcC----HHHHHhhcCCcceeeecCCeEEEEEEEee
Confidence 678899999999986 4677766 489999999999998754444
No 36
>PRK14142 heat shock protein GrpE; Provisional
Probab=65.22 E-value=6.4 Score=30.33 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 14 LNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 14 Ln~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
++.++..|..++++|||++|..+|..|
T Consensus 110 v~~I~kqL~~iLek~GVe~I~~~Ge~F 136 (223)
T PRK14142 110 LKSVADKLDSALTGLGLVAFGAEGEDF 136 (223)
T ss_pred HHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 456889999999999999999998654
No 37
>PRK14155 heat shock protein GrpE; Provisional
Probab=65.06 E-value=9.4 Score=28.94 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeeEEEE-eCCee
Q psy1896 8 SMVVNFLNDLYTLFDRIIKGYDVYKVET-IGDAY 40 (101)
Q Consensus 8 ~evv~lLn~lf~~FD~l~~~~~v~Ki~T-IGd~Y 40 (101)
..++.-+.-++..|..++++|||.+|.. +|+.+
T Consensus 93 ~~i~~Gvemi~k~~~~~L~k~GV~~I~~~~G~~F 126 (208)
T PRK14155 93 KNFIIGVEMTEKELLGAFERNGLKKIDPAKGDKF 126 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCceecCCCCCCC
Confidence 4577778889999999999999999986 89543
No 38
>PRK14161 heat shock protein GrpE; Provisional
Probab=58.60 E-value=17 Score=26.91 Aligned_cols=33 Identities=9% Similarity=0.264 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeeEEEE-eCCee
Q psy1896 8 SMVVNFLNDLYTLFDRIIKGYDVYKVET-IGDAY 40 (101)
Q Consensus 8 ~evv~lLn~lf~~FD~l~~~~~v~Ki~T-IGd~Y 40 (101)
..++.-+.-++..|..+++++|+.+|.. +|+.+
T Consensus 98 ~~~~~Gv~mi~k~l~~vL~~~Gv~~I~~~~G~~F 131 (178)
T PRK14161 98 TNIIAGVQMTKDELDKVFHKHHIEEIKPEIGSMF 131 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 4577788888999999999999999986 68755
No 39
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=57.70 E-value=16 Score=27.13 Aligned_cols=32 Identities=6% Similarity=0.116 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 9 MVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 9 evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
.++.-+.-+...|...++++||.+|..+|+.+
T Consensus 115 ~l~~Gvem~~~~l~~~L~k~Gv~~i~~~Ge~F 146 (193)
T COG0576 115 ALLEGVEMTLDQLLDALEKLGVEEIGPEGEKF 146 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 56777888899999999999999999988654
No 40
>PRK14149 heat shock protein GrpE; Provisional
Probab=56.64 E-value=18 Score=27.08 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCeeEEEEeC
Q psy1896 7 ASMVVNFLNDLYTLFDRIIKGYDVYKVETIG 37 (101)
Q Consensus 7 p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIG 37 (101)
...++.-++-++..|..+++++||.+|.++|
T Consensus 112 ~~~l~~Gv~mi~k~l~~vL~k~GV~~I~~~G 142 (191)
T PRK14149 112 ESALTKGLELTMEKLHEVLARHGIEGIECLE 142 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEeCCCC
Confidence 4567888888999999999999999999876
No 41
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=54.61 E-value=22 Score=30.47 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=41.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhh
Q psy1896 3 IATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVI 48 (101)
Q Consensus 3 ~s~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~i 48 (101)
|+..|.|+-+++++-...|+.-.+...+-+|..|||...-+.|+..
T Consensus 1 ~~~~~~ei~~~i~~~i~~~~~~~~~~~~g~V~sv~DgIa~v~Gl~~ 46 (504)
T COG0056 1 MQLNPTEISSLIKQQIENFDVEAEVKEVGTVISVGDGIARVSGLEN 46 (504)
T ss_pred CCCcHHHHHHHHHHHHHhcchhhhhhccceEEEEecceEEEecCch
Confidence 5778999999999999999999999999999999999999988643
No 42
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=54.56 E-value=3.4 Score=25.24 Aligned_cols=38 Identities=26% Similarity=0.548 Sum_probs=26.8
Q ss_pred ccCCHHHHHHHHHH----HHHHHHHhhhhcCe------eEEEEeCCee
Q psy1896 3 IATGASMVVNFLND----LYTLFDRIIKGYDV------YKVETIGDAY 40 (101)
Q Consensus 3 ~s~~p~evv~lLn~----lf~~FD~l~~~~~v------~Ki~TIGd~Y 40 (101)
+..+|.-+++.+|. -|..+|++|..+++ .|.++||--|
T Consensus 1 lp~Dp~mLlS~VN~kLRD~~~sLd~Lc~~~~id~~~l~~kL~~~Gy~Y 48 (55)
T PF14056_consen 1 LPMDPNMLLSIVNMKLRDEYSSLDELCYDYDIDKEELEEKLASIGYEY 48 (55)
T ss_pred CCCCcHHHHHHHHHHHHhccCCHHHHHHHhCCCHHHHHHHHHHcCCeE
Confidence 35678888888886 45678999998875 3455666555
No 43
>PRK14154 heat shock protein GrpE; Provisional
Probab=54.29 E-value=20 Score=27.27 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeeEEEE-eCCee
Q psy1896 8 SMVVNFLNDLYTLFDRIIKGYDVYKVET-IGDAY 40 (101)
Q Consensus 8 ~evv~lLn~lf~~FD~l~~~~~v~Ki~T-IGd~Y 40 (101)
..++.-+.-++..|..+++++||.+|.. +|+.+
T Consensus 130 ~~l~eGvemi~k~l~~vL~k~GVe~I~~~~G~~F 163 (208)
T PRK14154 130 KSMRDGMSLTLDLLHNTLAKHGVQVINPNPGDPF 163 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 4567777888999999999999999987 68755
No 44
>PRK14159 heat shock protein GrpE; Provisional
Probab=50.98 E-value=23 Score=26.19 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeeEEEEeC
Q psy1896 8 SMVVNFLNDLYTLFDRIIKGYDVYKVETIG 37 (101)
Q Consensus 8 ~evv~lLn~lf~~FD~l~~~~~v~Ki~TIG 37 (101)
..++.-+.-++..|..+++++||.+|.+.|
T Consensus 100 ~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G 129 (176)
T PRK14159 100 LKIKEGVQNTLDLFLKKLEKHGVALIKEEK 129 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCEecCCCC
Confidence 456778888999999999999999998776
No 45
>PRK14160 heat shock protein GrpE; Provisional
Probab=49.60 E-value=27 Score=26.55 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCeeEEEEeC
Q psy1896 7 ASMVVNFLNDLYTLFDRIIKGYDVYKVETIG 37 (101)
Q Consensus 7 p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIG 37 (101)
...++.-+.-++..|..++++|||.+|.+.|
T Consensus 134 ~~~l~~Gv~mi~kql~~vL~k~GVe~I~~~G 164 (211)
T PRK14160 134 VEDLKKGIEMTVKQFKTSLEKLGVEEISTEG 164 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCCCEEeCCCC
Confidence 3567888888999999999999999998876
No 46
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=47.00 E-value=28 Score=22.50 Aligned_cols=21 Identities=14% Similarity=0.604 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcC
Q psy1896 9 MVVNFLNDLYTLFDRIIKGYD 29 (101)
Q Consensus 9 evv~lLn~lf~~FD~l~~~~~ 29 (101)
++|+++.++|+.+-.|+++|+
T Consensus 54 ~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 54 ELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 789999999999999999885
No 47
>KOG3003|consensus
Probab=46.26 E-value=27 Score=27.26 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 8 SMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 8 ~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
..+...|.-+...|=.+..+||++|+.+||+-|
T Consensus 154 ~~l~eGl~mte~ql~~vf~KhGLekldPigekF 186 (236)
T KOG3003|consen 154 KDLFEGLSMTEAQLKEVFAKHGLEKLDPIGEKF 186 (236)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCceecCCCCCCC
Confidence 345566677888899999999999999999876
No 48
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=41.41 E-value=27 Score=24.12 Aligned_cols=18 Identities=28% Similarity=0.707 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhhhcC
Q psy1896 12 NFLNDLYTLFDRIIKGYD 29 (101)
Q Consensus 12 ~lLn~lf~~FD~l~~~~~ 29 (101)
..|+++|++||+|++.+.
T Consensus 42 ~~l~kVy~~F~eLVe~~~ 59 (108)
T PF10664_consen 42 EALQKVYRKFDELVESYA 59 (108)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 458999999999999863
No 49
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=40.64 E-value=39 Score=28.46 Aligned_cols=67 Identities=28% Similarity=0.472 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhh---cCeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhhcccCcccCCCCCCCC
Q psy1896 15 NDLYTLFDRIIKG---YDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSP 86 (101)
Q Consensus 15 n~lf~~FD~l~~~---~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrkk~egsy~~~~p~~~~ 86 (101)
|=+|..||+|++- |+|.= .+||+.=--| ........-+.-+..+..++.|-|+++.|. .++=|-+.|
T Consensus 199 NPlye~fD~lLeI~~~yDVtl--SLGDglRPG~--i~DA~D~aQi~El~~lgeL~~rA~e~gVQv-MVEGPGHvP 268 (423)
T TIGR00190 199 NPLYKNFDYILEIAKEYDVTL--SLGDGLRPGC--IADATDRAQISELITLGELVERAREADVQC-MVEGPGHVP 268 (423)
T ss_pred CchHHHHHHHHHHHHHhCeee--eccCCcCCCc--cccCCcHHHHHHHHHHHHHHHHHHHcCCeE-EEECCCCCc
Confidence 4499999998864 66542 7888754322 111223445556667888888888888876 555565554
No 50
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=38.00 E-value=1e+02 Score=19.23 Aligned_cols=41 Identities=34% Similarity=0.462 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeeh
Q psy1896 5 TGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCL 45 (101)
Q Consensus 5 ~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g 45 (101)
......-++|..+...+..++..++..-...-||.++++..
T Consensus 19 ~g~~~~~~~l~~~~~~l~~~~~~~~~~~~r~~~d~f~~l~~ 59 (133)
T cd07556 19 LGPDEGDELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVSG 59 (133)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCcEEEEeecceEEEEEC
Confidence 35566778888999999999988666666788999999853
No 51
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.50 E-value=95 Score=24.13 Aligned_cols=36 Identities=8% Similarity=0.128 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeee
Q psy1896 5 TGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYM 41 (101)
Q Consensus 5 ~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym 41 (101)
-+++||-.+++-+-..++.++.+.++ +|+.|||.=+
T Consensus 87 R~~~Ev~~Lm~L~~~~l~~~~~~~~i-rv~~iG~~~~ 122 (256)
T PRK14828 87 RPSEELNPLLDIIEDVVRQLAPDGRW-RVRHVGSLDL 122 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCe-EEEEECChhh
Confidence 46778877777777777777755544 7999998754
No 52
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.37 E-value=34 Score=23.94 Aligned_cols=24 Identities=33% Similarity=0.732 Sum_probs=15.6
Q ss_pred cchhhHHHHHHHHHHHHHHhhhcc
Q psy1896 50 GAVVGLLCAILVVMFIVYRMRKKD 73 (101)
Q Consensus 50 g~~v~ll~ai~~I~~fAl~Mrkk~ 73 (101)
|...+++-.|+.|.++..|+|||.
T Consensus 72 gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 72 GVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 444556667778888999999973
No 53
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=34.95 E-value=53 Score=27.73 Aligned_cols=67 Identities=25% Similarity=0.433 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhh---cCeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhhcccCcccCCCCCCCC
Q psy1896 15 NDLYTLFDRIIKG---YDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSP 86 (101)
Q Consensus 15 n~lf~~FD~l~~~---~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrkk~egsy~~~~p~~~~ 86 (101)
|=+|..||+|++- |+|.= .+||+.=--| ........-+.-+..+..++.|-+++.+|. .++=|-+.|
T Consensus 202 NPlye~fD~lLeI~~~yDVtl--SLGDglRPG~--i~Da~D~aQi~El~~lgeL~~RA~e~gVQv-MVEGPGHvP 271 (431)
T PRK13352 202 NPLYEHFDYLLEILKEYDVTL--SLGDGLRPGC--IADATDRAQIQELITLGELVKRAREAGVQV-MVEGPGHVP 271 (431)
T ss_pred CchHHHHHHHHHHHHHhCeee--eccCCcCCCc--cccCCcHHHHHHHHHHHHHHHHHHHcCCeE-EEECCCCCC
Confidence 4499999998874 66542 7888754322 111223445556667888898989988876 444466655
No 54
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=34.91 E-value=38 Score=28.48 Aligned_cols=67 Identities=27% Similarity=0.477 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhhh---cCeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhhcccCcccCCCCCCCC
Q psy1896 15 NDLYTLFDRIIKG---YDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSP 86 (101)
Q Consensus 15 n~lf~~FD~l~~~---~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrkk~egsy~~~~p~~~~ 86 (101)
|=+|+.||+|++- |+|. -.+||+.=--| .-......-+.-+..+..++.|-|++..|. .++-|-+.|
T Consensus 198 NPly~~fD~lLeI~k~yDVt--LSLGDglRPG~--i~Da~D~aQi~EL~~lgeL~~rA~e~gVQv-MVEGPGHVP 267 (420)
T PF01964_consen 198 NPLYEHFDRLLEIAKEYDVT--LSLGDGLRPGC--IADATDRAQIQELIILGELVKRAREAGVQV-MVEGPGHVP 267 (420)
T ss_dssp -HHHHTHHHHHHHHTTTT-E--EEE--TT--SS--GGGTT-HHHHHHHHHHHHHHHHHHHTT--E-EEEE-SB--
T ss_pred CcHHHhHHHHHHHHHHhCee--EecccccCCCC--cCCCCcHHHHHHHHHHHHHHHHHHHCCCeE-EeeCCCCCC
Confidence 5599999999875 6653 27888654322 111122344555566788888888887776 344455544
No 55
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.17 E-value=19 Score=28.69 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=21.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhh-cCeeEEEEeCC
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIKG-YDVYKVETIGD 38 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~~-~~v~Ki~TIGd 38 (101)
|.+.+|++.-|+++|.+.=. .+- -=|.+||++|-
T Consensus 155 ~~~geelfe~lDe~F~rLip-~E~gki~~~vk~VGg 189 (315)
T COG4030 155 SLSGEELFEKLDELFSRLIP-SEVGKIVESVKAVGG 189 (315)
T ss_pred cccHHHHHHHHHHHHhhcCH-HHHHHHHHhhhhccC
Confidence 56778888888888876433 111 11667777775
No 56
>KOG0969|consensus
Probab=30.04 E-value=46 Score=30.69 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=12.8
Q ss_pred HHHHHHhhhcccCcc
Q psy1896 63 MFIVYRMRKKDEGSY 77 (101)
Q Consensus 63 ~~fAl~Mrkk~egsy 77 (101)
+.+|.||||+|+||-
T Consensus 864 veLAermrkRD~gta 878 (1066)
T KOG0969|consen 864 VELAERMRKRDAGTA 878 (1066)
T ss_pred HHHHHHhhhcCCCCC
Confidence 368899999999984
No 57
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=28.84 E-value=13 Score=22.50 Aligned_cols=38 Identities=29% Similarity=0.518 Sum_probs=27.8
Q ss_pred CccCCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeee
Q psy1896 2 RIATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMV 42 (101)
Q Consensus 2 ~~s~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~ 42 (101)
+..+++.++.+.|++. ..+|-|.+.|++.. |.|+.|++
T Consensus 14 ~~~~s~~ea~~~~~~~-~~~~~i~~~Yd~lH--t~s~~yiv 51 (62)
T PF12668_consen 14 KLNISGEEAYNYFKRS-GVIDYIIDCYDVLH--TQSDEYIV 51 (62)
T ss_pred HHCcCHHHHHHHHHHc-CcHHHHHHcchHHH--HCcHHHHH
Confidence 3467899999999863 77777777777765 66666654
No 58
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=28.83 E-value=77 Score=27.89 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhhcCeeEEE-EeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhhcccCcccCCCCCCCC
Q psy1896 15 NDLYTLFDRIIKGYDVYKVE-TIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSP 86 (101)
Q Consensus 15 n~lf~~FD~l~~~~~v~Ki~-TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrkk~egsy~~~~p~~~~ 86 (101)
|=||+.||+||+-..-|-|. .+||..=--| ....+...-+.-+..+..++.+-++++.|- ..+=|-+.|
T Consensus 352 NplYe~FD~ileI~k~YDVtlSLGDGLRPG~--iaDA~D~AQ~~EL~tLGELt~rA~e~gVQV-MIEGPGHVP 421 (607)
T PRK09284 352 NFLYTHFEEICEIMAAYDVSFSLGDGLRPGS--IADANDEAQFAELETLGELTKIAWEHDVQV-MIEGPGHVP 421 (607)
T ss_pred CcHHHHHHHHHHHHHHhCeeeeccCCcCCCc--cccCCcHHHHHHHHHHHHHHHHHHHcCCeE-EEECCCCCc
Confidence 44999999998754333332 7888754322 111123344445556777777777777765 444454443
No 59
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=28.83 E-value=1.2e+02 Score=19.44 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=22.6
Q ss_pred HHHHHHHhhhhcCeeEEEEeCCeeeeeeh
Q psy1896 17 LYTLFDRIIKGYDVYKVETIGDAYMVNCL 45 (101)
Q Consensus 17 lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g 45 (101)
=|..|-+-+.+|||+ .+|=|.--+|.-+
T Consensus 8 nf~afk~was~ygve-fktngsqtlaii~ 35 (79)
T PF09061_consen 8 NFNAFKEWASKYGVE-FKTNGSQTLAIIK 35 (79)
T ss_dssp -HHHHHHHHHTTT-E-EEEETTEEEEEET
T ss_pred cHHHHHHHHHHhCeE-EecCCceEEEeec
Confidence 388999999999997 6799999888754
No 60
>PF06198 DUF999: Protein of unknown function (DUF999); InterPro: IPR009340 This is a family of conserved Schizosaccharomyces pombe proteins with unknown function.
Probab=27.85 E-value=80 Score=22.35 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=19.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhhhh
Q psy1896 3 IATGASMVVNFLNDLYTLFDRIIKG 27 (101)
Q Consensus 3 ~s~~p~evv~lLn~lf~~FD~l~~~ 27 (101)
|.+....+-..||+||+.|-..-+.
T Consensus 48 mniktnkik~flndlftefskfhns 72 (143)
T PF06198_consen 48 MNIKTNKIKEFLNDLFTEFSKFHNS 72 (143)
T ss_pred ccccHHHHHHHHHhHHHHHHHhhhc
Confidence 4556677889999999999876655
No 61
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=27.26 E-value=1.4e+02 Score=22.62 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=26.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhh---cCeeEEEEeCCeee
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIKG---YDVYKVETIGDAYM 41 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~~---~~v~Ki~TIGd~Ym 41 (101)
.-+++||-.+++-+-..|+++++. +++ ||+.|||.=.
T Consensus 59 ~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~i-~vr~iGd~~~ 98 (221)
T cd00475 59 KRPKEEVDFLMELFRDVLRRILKELEKLGV-RIRIIGDLSL 98 (221)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHCCc-EEEEEeChhh
Confidence 357888877777777777777654 344 7899999754
No 62
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=27.08 E-value=82 Score=24.75 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhhhc-CeeEEEEeCCeee
Q psy1896 14 LNDLYTLFDRIIKGY-DVYKVETIGDAYM 41 (101)
Q Consensus 14 Ln~lf~~FD~l~~~~-~v~Ki~TIGd~Ym 41 (101)
++++...++.|.++| ++-++.+||.+|=
T Consensus 8 ~~ei~~~l~~l~~~~p~~v~~~~iG~S~e 36 (300)
T cd06246 8 LNEIYSWIEFITERHSDMLEKIHIGSSFE 36 (300)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEecccCCC
Confidence 567778888888776 6778888887763
No 63
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=25.40 E-value=1.1e+02 Score=17.36 Aligned_cols=27 Identities=7% Similarity=0.145 Sum_probs=19.7
Q ss_pred HHHHHHhhhhcCeeEEEEeCCeeeeee
Q psy1896 18 YTLFDRIIKGYDVYKVETIGDAYMVNC 44 (101)
Q Consensus 18 f~~FD~l~~~~~v~Ki~TIGd~Ym~~~ 44 (101)
|.++..++.++|++.+..=|+-+.-..
T Consensus 1 ~~el~k~L~~~G~~~~r~~GSH~~~~~ 27 (56)
T PF07927_consen 1 WRELIKLLEKAGFEEVRQKGSHHIFRH 27 (56)
T ss_dssp -HHHHHHHHHTT-EEEEEETTEEEEE-
T ss_pred ChHHHHHHHHCCCEEecCCCCEEEEEe
Confidence 577889999999988887788776654
No 64
>PLN02444 HMP-P synthase
Probab=25.38 E-value=97 Score=27.43 Aligned_cols=69 Identities=22% Similarity=0.297 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhhcCeeEEE-EeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhhcccCcccCCCCCCCC
Q psy1896 15 NDLYTLFDRIIKGYDVYKVE-TIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSP 86 (101)
Q Consensus 15 n~lf~~FD~l~~~~~v~Ki~-TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrkk~egsy~~~~p~~~~ 86 (101)
|=||+.||+||+-..-|-|. .+||..=--| ....+...-+.-+..+..++.+-++++.|- ..+=|-+.|
T Consensus 357 NPlYe~FD~ileI~k~YDVtlSLGDGLRPG~--iaDA~D~AQ~~EL~tLGELtkrA~e~gVQV-MIEGPGHVP 426 (642)
T PLN02444 357 NFAYEHWDDILDICNQYDIALSIGDGLRPGS--IYDANDTAQFAELLTQGELTRRAWEKDVQV-MNEGPGHVP 426 (642)
T ss_pred CchHHHHHHHHHHHHHhCeeeeccCCcCCCc--cccCCcHHHHHHHHHHHHHHHHHHHcCCeE-EEECCCcCc
Confidence 44999999998753333332 7888754322 111122334445556777777777777765 444454443
No 65
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=24.90 E-value=1.3e+02 Score=19.26 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=18.7
Q ss_pred CccCCHHHH---HHHHHHHHHHHHHhhh
Q psy1896 2 RIATGASMV---VNFLNDLYTLFDRIIK 26 (101)
Q Consensus 2 ~~s~~p~ev---v~lLn~lf~~FD~l~~ 26 (101)
|++++.+|+ ..-||.+...||.|-+
T Consensus 14 ~L~l~eee~~~~~~~l~~il~~~~~L~~ 41 (93)
T TIGR00135 14 RLELSEEEAESFAGDLDKILGFVEQLNE 41 (93)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677788776 6777888888887543
No 66
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=23.89 E-value=97 Score=24.48 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhhhc-CeeEEEEeCCeee
Q psy1896 14 LNDLYTLFDRIIKGY-DVYKVETIGDAYM 41 (101)
Q Consensus 14 Ln~lf~~FD~l~~~~-~v~Ki~TIGd~Ym 41 (101)
++++...++.|+.+| +.-++.+||.+|-
T Consensus 5 ~~ei~~~l~~L~~~~p~~v~l~~iG~S~E 33 (300)
T cd03872 5 LEEIESWMFYMNKTHSDLVHLFSIGKSYE 33 (300)
T ss_pred HHHHHHHHHHHHHHCCCceEEEEeeecCC
Confidence 577788888888776 6677788887664
No 67
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=22.05 E-value=60 Score=16.33 Aligned_cols=10 Identities=30% Similarity=0.939 Sum_probs=6.6
Q ss_pred HHHHHHHHHH
Q psy1896 14 LNDLYTLFDR 23 (101)
Q Consensus 14 Ln~lf~~FD~ 23 (101)
|.++|..||.
T Consensus 2 l~~~F~~~D~ 11 (31)
T PF13405_consen 2 LREAFKMFDK 11 (31)
T ss_dssp HHHHHHHH-T
T ss_pred HHHHHHHHCC
Confidence 5677888875
No 68
>PTZ00458 acyl CoA binding protein; Provisional
Probab=21.46 E-value=22 Score=23.46 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=16.1
Q ss_pred HHhhhhcCeeEEEEeCCeee
Q psy1896 22 DRIIKGYDVYKVETIGDAYM 41 (101)
Q Consensus 22 D~l~~~~~v~Ki~TIGd~Ym 41 (101)
|.+++=|++||.-|.|||=.
T Consensus 24 d~~L~lYalyKQAt~G~c~~ 43 (90)
T PTZ00458 24 EIKLDLYKYYKQSTVGNCNI 43 (90)
T ss_pred HHHHHHHHHHhhhccCCCCC
Confidence 55566689999999999954
No 69
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.20 E-value=2.2e+02 Score=21.85 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=23.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhh---cCeeEEEEeCCeee
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIKG---YDVYKVETIGDAYM 41 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~~---~~v~Ki~TIGd~Ym 41 (101)
.-+++||-.+++-+-..|+...+. +++ ||+.|||.=+
T Consensus 63 ~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~i-rvr~iG~~~~ 102 (233)
T PRK14833 63 KRPKSEVDFLMKLLKKYLKDERSTYLENNI-RFKAIGDLEG 102 (233)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHhCCc-EEEEEeChhh
Confidence 346777766666555556554443 444 7999999543
No 70
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.14 E-value=87 Score=25.44 Aligned_cols=19 Identities=11% Similarity=0.443 Sum_probs=13.6
Q ss_pred ccCCHHHHHHHHHHHHHHH
Q psy1896 3 IATGASMVVNFLNDLYTLF 21 (101)
Q Consensus 3 ~s~~p~evv~lLn~lf~~F 21 (101)
.+.+..|++++||.-|..|
T Consensus 142 VnNES~eIirm~N~aFde~ 160 (324)
T COG0435 142 VNNESAEIIRMFNSAFDEF 160 (324)
T ss_pred ecCCcHHHHHHHHHHHHHH
Confidence 3567889999999544443
No 71
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.95 E-value=2.4e+02 Score=21.53 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhh---hcCeeEEEEeCCeee
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIK---GYDVYKVETIGDAYM 41 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~---~~~v~Ki~TIGd~Ym 41 (101)
+-++.||-.+++-+-..|+..+. ++++ ||+.|||.=+
T Consensus 52 ~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~i-~vr~iG~~~~ 91 (229)
T PRK10240 52 NRPAQEVSALMELFVWALDSEVKSLHRHNV-RLRIIGDTSR 91 (229)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHCCc-EEEEEeChhh
Confidence 34677776666666666666544 3555 7999999755
No 72
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.82 E-value=2.5e+02 Score=21.55 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=24.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhh---hcCeeEEEEeCCeee
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIK---GYDVYKVETIGDAYM 41 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~---~~~v~Ki~TIGd~Ym 41 (101)
+-+++||-.+++-+-..+++..+ ++++ ||..|||.=+
T Consensus 62 ~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~i-rvr~iG~~~~ 101 (233)
T PRK14841 62 KRPKEEVEFLMDLFVQMIDREMELLRRERV-RVRILGRKEG 101 (233)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHcCc-EEEEEeChhh
Confidence 45678886666666666666554 3444 7899999654
No 73
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=20.51 E-value=3.8e+02 Score=20.15 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhccchhhHHHHHH
Q psy1896 11 VNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAIL 60 (101)
Q Consensus 11 v~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~ 60 (101)
+.-+-+..+.|=++++.|+|.+|..+ |.++...+.+...++..+.
T Consensus 37 i~r~~~~L~~f~~~~~~~~v~~i~~v-----ATsA~R~A~N~~~~~~~i~ 81 (285)
T PF02541_consen 37 IERAIDALKRFKEILKDYGVEKIRAV-----ATSALREAKNSDEFLDRIK 81 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTGSEEEEE-----EEHHHHHSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEE-----hhHHHHhCcCHHHHHHHHH
Confidence 34444556999999999999876543 4455555655555555554
No 74
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=20.42 E-value=4.3e+02 Score=20.70 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeeh
Q psy1896 5 TGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCL 45 (101)
Q Consensus 5 ~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g 45 (101)
.+|-+.....++++...-+.+.+||.--.--=||-+|++|.
T Consensus 146 ~~~ydt~~~I~~l~~~l~~~~~~~G~L~fylGGDNi~~v~p 186 (246)
T PF05165_consen 146 ESPYDTYLEIEDLYAKLMKYLEKYGSLAFYLGGDNIMAVCP 186 (246)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTTT---EEEETTEEEEE-T
T ss_pred cChHHHHHHHHHHHHHHHHHHHhcCCEEEEecCceEEEECC
Confidence 45666777777888877777888987666788999999884
No 75
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.41 E-value=1.5e+02 Score=22.87 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHHHHH---hhhhcCeeEEEEeCCeee
Q psy1896 5 TGASMVVNFLNDLYTLFDR---IIKGYDVYKVETIGDAYM 41 (101)
Q Consensus 5 ~~p~evv~lLn~lf~~FD~---l~~~~~v~Ki~TIGd~Ym 41 (101)
-+++||-.+++-+-..|++ .+.++++ ||..|||.=+
T Consensus 80 R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~i-ri~~iG~~~~ 118 (249)
T PRK14831 80 RPLEEVNFLMTLFERVLRRELEELMEENV-RIRFVGDLDP 118 (249)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHCCc-EEEEEechhh
Confidence 4566764444333334443 3344554 7899998644
No 76
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=20.29 E-value=1.3e+02 Score=25.45 Aligned_cols=60 Identities=18% Similarity=0.370 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhhhcCeeEEE-EeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhhcccCc
Q psy1896 15 NDLYTLFDRIIKGYDVYKVE-TIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRKKDEGS 76 (101)
Q Consensus 15 n~lf~~FD~l~~~~~v~Ki~-TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrkk~egs 76 (101)
|=+|+.||.|++-..-|-|. .+||+.=--| ....+...-..-+..+..++.+-++.+.|-
T Consensus 200 Nply~~fd~lleI~k~yDvtlSLGDglRPG~--i~DA~D~aQ~~EL~tlgeL~krA~~~gVQv 260 (432)
T COG0422 200 NPLYEHFDELLEIFKEYDVTLSLGDGLRPGC--IADANDEAQFAELITLGELTKRAWEAGVQV 260 (432)
T ss_pred CchhhhHHHHHHHHHHhCeeeeccCCCCCCc--ccCCccHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 44999999999864433332 7888765322 111112222333445566666666665554
No 77
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=20.19 E-value=1.2e+02 Score=23.92 Aligned_cols=27 Identities=22% Similarity=0.628 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhhhc-CeeEEEEeCCee
Q psy1896 14 LNDLYTLFDRIIKGY-DVYKVETIGDAY 40 (101)
Q Consensus 14 Ln~lf~~FD~l~~~~-~v~Ki~TIGd~Y 40 (101)
++++....|.|+++| ++-++.+||.+|
T Consensus 7 ~~ei~~~l~~L~~~~p~~v~l~~iG~S~ 34 (298)
T cd06247 7 MDEIYNWMDQIKEKYSELVSQHYLGCTY 34 (298)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeceECc
Confidence 456677777777776 567777777665
No 78
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=20.07 E-value=1.3e+02 Score=23.61 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhhc-CeeEEEEeCCeee
Q psy1896 14 LNDLYTLFDRIIKGY-DVYKVETIGDAYM 41 (101)
Q Consensus 14 Ln~lf~~FD~l~~~~-~v~Ki~TIGd~Ym 41 (101)
++++...+|.|.++| +.-++.+||.++-
T Consensus 9 ~~ei~~~l~~L~~~~p~~v~~~~iG~S~e 37 (301)
T cd03870 9 LDEIYDFMDLLVAEHPNLVSKLQIGRSYE 37 (301)
T ss_pred HHHHHHHHHHHHHHCCCceEEEecccCCC
Confidence 567777778887776 4567778887653
Done!