Query psy1896
Match_columns 101
No_of_seqs 152 out of 891
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:01:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ejp_A Syndecan-4; symmetric-p 99.6 1.2E-16 4.1E-21 84.6 1.7 28 68-101 1-28 (28)
2 1ab8_A Adenylyl cyclase; lyase 99.2 4.3E-11 1.5E-15 87.3 6.4 66 6-71 37-111 (220)
3 1azs_A VC1; complex (lyase/hyd 99.1 2.7E-10 9.2E-15 83.9 7.9 62 5-71 52-113 (220)
4 3uvj_A Guanylate cyclase solub 99.1 1.9E-10 6.5E-15 84.1 6.9 62 5-71 32-93 (225)
5 3et6_A Soluble guanylyl cyclas 99.1 3.7E-10 1.3E-14 79.7 7.8 63 4-71 26-89 (190)
6 2wz1_A Guanylate cyclase solub 99.1 2.7E-10 9.2E-15 83.3 6.5 60 7-71 36-98 (219)
7 1y10_A Hypothetical protein RV 99.0 8.6E-10 2.9E-14 88.4 7.3 44 4-48 232-275 (407)
8 2w01_A Adenylate cyclase; guan 99.0 2.3E-09 7.8E-14 77.1 8.3 46 4-49 31-76 (208)
9 3r5g_A CYAB; adenylyl cyclase, 99.0 3E-09 1E-13 75.3 8.8 65 4-71 26-90 (198)
10 1wc3_A Adenylate cyclase; solu 98.9 5.3E-09 1.8E-13 76.1 9.0 65 4-71 44-108 (219)
11 1yk9_A Adenylate cyclase; beta 98.8 3.5E-10 1.2E-14 81.6 -0.0 62 5-71 28-89 (204)
12 1ybt_A Hydrolase, alpha/beta h 98.7 9.4E-09 3.2E-13 73.1 4.7 43 5-47 35-77 (184)
13 1fx2_A Receptor-type adenylate 98.7 2.7E-08 9.1E-13 72.3 6.8 42 7-48 31-72 (235)
14 3mr7_A Adenylate/guanylate cyc 98.4 8.3E-07 2.8E-11 62.6 7.9 42 5-47 25-67 (189)
15 1dkg_A Nucleotide exchange fac 74.3 3.5 0.00012 29.7 4.0 33 8-40 117-149 (197)
16 3a6m_A Protein GRPE, HSP-70 co 73.0 3.2 0.00011 29.5 3.4 34 7-40 93-126 (177)
17 4ani_A Protein GRPE; chaperone 62.1 7.1 0.00024 28.6 3.5 34 7-40 135-168 (213)
18 1ylx_A Hypothetical protein AP 48.6 15 0.00052 24.2 3.0 24 13-36 12-35 (103)
19 3tek_A Thermodbp-single strand 45.2 17 0.00058 25.1 2.9 34 8-45 83-121 (148)
20 3lmb_A Uncharacterized protein 40.1 64 0.0022 22.1 5.4 43 1-44 1-43 (165)
21 3kfu_G Glutamyl-tRNA(Gln) amid 31.1 43 0.0015 20.9 3.0 25 2-26 19-46 (92)
22 3t98_B Nucleoporin NUP58/NUP45 30.9 60 0.002 20.6 3.7 24 4-27 43-66 (93)
23 3epo_A Thiamine biosynthesis p 26.4 46 0.0016 28.1 3.1 67 15-86 350-419 (612)
24 3ip4_C Aspartyl/glutamyl-tRNA( 25.6 61 0.0021 20.4 3.0 25 2-26 17-44 (100)
25 3mf2_A BLL0957 protein; aminoa 25.0 70 0.0024 25.0 3.8 39 5-43 201-240 (346)
26 3h0l_C Glutamyl-tRNA(Gln) amid 24.8 45 0.0015 20.8 2.2 25 2-26 15-42 (94)
27 3i5g_B Myosin regulatory light 24.0 48 0.0016 21.4 2.4 21 2-23 7-27 (153)
28 3dd7_B PHD, prevent HOST death 23.4 30 0.001 16.9 0.9 12 19-30 4-15 (23)
29 3mdq_A Exopolyphosphatase; str 23.4 2.3E+02 0.0077 20.9 6.5 50 5-60 50-99 (315)
30 3v38_A Carboxypeptidase T; hyd 22.9 55 0.0019 24.7 2.8 27 14-40 12-39 (326)
31 2nps_B Syntaxin 13, vesicle-as 22.2 65 0.0022 18.9 2.5 21 9-29 13-33 (71)
32 3b5n_B Protein SSO1; snare com 21.7 68 0.0023 18.7 2.5 21 9-29 17-37 (69)
33 3ox6_A Calcium-binding protein 20.7 1.1E+02 0.0037 18.3 3.5 23 1-24 1-23 (153)
34 1k8u_A S100A6, calcyclin, CACY 20.6 70 0.0024 17.9 2.4 18 5-22 3-20 (90)
35 1gl2_B Syntaxin 7; membrane pr 20.5 75 0.0026 18.3 2.5 21 9-29 16-36 (65)
36 1jth_B Syntaxin 1A; coiled-coi 20.5 73 0.0025 18.9 2.5 21 9-29 17-37 (77)
37 2bl0_B Myosin regulatory light 20.5 47 0.0016 20.0 1.7 16 4-23 1-16 (145)
38 1n7s_B Syntaxin 1A; neuronal s 20.4 75 0.0026 18.4 2.5 21 9-29 19-39 (68)
39 1bby_A RAP30; average structur 20.2 60 0.0021 19.6 2.1 12 12-23 8-19 (69)
No 1
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=99.61 E-value=1.2e-16 Score=84.56 Aligned_cols=28 Identities=57% Similarity=0.894 Sum_probs=26.2
Q ss_pred HhhhcccCcccCCCCCCCCCCcccccCCcccccC
Q psy1896 68 RMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 101 (101)
Q Consensus 68 ~Mrkk~egsy~~~~p~~~~~~~~~~~~~~~e~y~ 101 (101)
||||||||||+|+|| ++|+|++|+||||
T Consensus 1 RmrKKDEGSY~Lde~------p~Y~k~~~~EfYA 28 (28)
T 1ejp_A 1 RMKKKDEGSYDLGKK------PIYKKAPTNEFYA 28 (28)
T ss_dssp CCSCCCCCCCCCCSC------CCCCCCCCCCSCC
T ss_pred CcccccccccccCCC------cccccCCcccccC
Confidence 699999999999998 3799999999998
No 2
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*
Probab=99.17 E-value=4.3e-11 Score=87.34 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhc---CeeEEEEeCCeeeeeehhhhccc------hhhHHHHHHHHHHHHHHhhh
Q psy1896 6 GASMVVNFLNDLYTLFDRIIKGY---DVYKVETIGDAYMVNCLAVIGGA------VVGLLCAILVVMFIVYRMRK 71 (101)
Q Consensus 6 ~p~evv~lLn~lf~~FD~l~~~~---~v~Ki~TIGd~Ym~~~g~~iag~------~v~ll~ai~~I~~fAl~Mrk 71 (101)
+|.+++.+||++|+.||.++.+| +++|+||+||+|||+.|+|.... ......|+...+.+|++|++
T Consensus 37 ~p~~~~~~Ln~~~~~~~~~i~~~~~~g~~~ik~iGD~~ma~fg~p~~~~~~~~~~~~~~~~~a~~a~~~Al~~~~ 111 (220)
T 1ab8_A 37 EGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVG 111 (220)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEECCCCSCCC--------CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeCceEEEEECCCccccccccccccccHHHHHHHHHHHHHHHH
Confidence 48999999999999999999987 89999999999999999877210 00122466666777777765
No 3
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=99.09 E-value=2.7e-10 Score=83.91 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhh
Q psy1896 5 TGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRK 71 (101)
Q Consensus 5 ~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrk 71 (101)
.+|++++.+||++|+.||+++.+|+.++++++||+|||+.|+|.... .|+...+.+|++|++
T Consensus 52 ~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~ma~fg~p~~~~-----~~a~~Av~~Al~m~~ 113 (220)
T 1azs_A 52 CTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARA-----DHAHCCVEMGMDMIE 113 (220)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCS-----THHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCeEEEEECCCCCCh-----HHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999887431 233344444444443
No 4
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}
Probab=99.09 E-value=1.9e-10 Score=84.13 Aligned_cols=62 Identities=35% Similarity=0.461 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhh
Q psy1896 5 TGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRK 71 (101)
Q Consensus 5 ~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrk 71 (101)
.+|++++.+||++|+.||.++.+|+.+++|++||+|||+.|+|... ..|+...+.+|++|++
T Consensus 32 ~~~~~~~~~ln~~~~~~~~~i~~~~g~v~k~~GD~~ma~fg~p~~~-----~~~a~~a~~~al~~~~ 93 (225)
T 3uvj_A 32 CSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGLHKES-----DTHAVQIALMALKMME 93 (225)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCEEECCSTTCEEEEESSSSCC-----TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCeEEEEeeCcEEEEEECCCCCc-----hHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999987653 2456666677777776
No 5
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=99.08 E-value=3.7e-10 Score=79.75 Aligned_cols=63 Identities=38% Similarity=0.605 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhc-CeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhh
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIKGY-DVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRK 71 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~~~-~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrk 71 (101)
+.+|++++.+||++|+.||+++++| |+++++++||+|||+.|+|.... .|+...+.+|++|++
T Consensus 26 ~~~~~~~~~~l~~~~~~~~~~i~~~~g~~~vk~~GD~~~a~fg~~~~~~-----~~~~~a~~~al~~~~ 89 (190)
T 3et6_A 26 RSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCNVTVPCD-----DHADVLLEFALRMHE 89 (190)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHGGGCTTEEEEECTTSCEEEEESSSSCCS-----THHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeCCEEEEEECCCCCch-----hHHHHHHHHHHHHHH
Confidence 3689999999999999999999999 99999999999999999887532 345556677777766
No 6
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Probab=99.06 E-value=2.7e-10 Score=83.29 Aligned_cols=60 Identities=37% Similarity=0.442 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh---hcCeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhh
Q psy1896 7 ASMVVNFLNDLYTLFDRIIK---GYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRK 71 (101)
Q Consensus 7 p~evv~lLn~lf~~FD~l~~---~~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrk 71 (101)
|++++.+||++|+.||.+++ +|+++|++++||+|||+.|+|.... .|+...+.+|++|++
T Consensus 36 ~~~~~~~Ln~~~~~~~~~i~~~~~~~g~~~k~~GD~~ma~fg~p~~~~-----~~a~~A~~~Al~~~~ 98 (219)
T 2wz1_A 36 AMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCI-----HHARSICHLALDMME 98 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCTTCEEECCCTTCEEEEESSSSCCT-----THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCEEEEeecCCEEEEEECCCCCCh-----hHHHHHHHHHHHHHH
Confidence 99999999999999999999 8899999999999999999887532 456667778888777
No 7
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=98.98 E-value=8.6e-10 Score=88.42 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhh
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVI 48 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~i 48 (101)
+.+|.+++.+||++|+.||.+++ |+++|||||||+|||++|.|.
T Consensus 232 ~~~p~evv~lLn~~~~~~~~i~~-~~g~~iKtiGDa~mavfg~p~ 275 (407)
T 1y10_A 232 VVSAEELGHLAGRLAGLARDLTA-PPVWFIKTIGDAVMLVCPDPA 275 (407)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHCC-TTCEEEEEETTEEEEEESSHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHH-cCcEEEEEecceEEEEECCHH
Confidence 46899999999999999999887 899999999999999998765
No 8
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=98.97 E-value=2.3e-09 Score=77.14 Aligned_cols=46 Identities=22% Similarity=0.144 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhc
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIG 49 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~ia 49 (101)
+.+|++++.+||++|+.|++++.+|+.++++++||+|||+.|+|..
T Consensus 31 ~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~a~fg~p~~ 76 (208)
T 2w01_A 31 GLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVLFGAPTS 76 (208)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCEEEEEECCCCC
Confidence 3689999999999999999999999999999999999999998764
No 9
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=98.97 E-value=3e-09 Score=75.34 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhh
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRK 71 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrk 71 (101)
..+|++++.+||++|+.|++++.+|+.++++++||+|||+.|+|.... .-.++...+.+|++|++
T Consensus 26 ~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~a~fg~p~~~~---~~~~a~~a~~~al~i~~ 90 (198)
T 3r5g_A 26 ELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVMVFFGDPSTQG---AKKDAVAAVSMGIAMRK 90 (198)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEETTEEEEEESSSSCSC---HHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeeeCCEEEEEECCCcccc---cHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999999999887532 12333334444444443
No 10
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=98.92 E-value=5.3e-09 Score=76.13 Aligned_cols=65 Identities=17% Similarity=0.016 Sum_probs=50.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhh
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRK 71 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrk 71 (101)
+.+|++++.+||++|+.|++++.+|+.+.+|++||+|||+.|+|.... .-.|+...+.+|++|++
T Consensus 44 ~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~ma~fg~p~~~~---~~~~a~~Av~~Al~~~~ 108 (219)
T 1wc3_A 44 ALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEEMS---PSEQVRRAIATARQMLV 108 (219)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCC---HHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCeEEEEECCCCCCC---ChHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999999999876421 12334444445555443
No 11
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}
Probab=98.83 E-value=3.5e-10 Score=81.62 Aligned_cols=62 Identities=26% Similarity=0.354 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhh
Q psy1896 5 TGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRK 71 (101)
Q Consensus 5 ~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrk 71 (101)
.+|++++.+||++|+.||+++.+|+.++++++||+|||+.|+|.... .|+...+.+|++|++
T Consensus 28 ~~~~~~~~~ln~~~~~~~~~i~~~gG~v~k~~GD~~ma~fg~p~~~~-----~~a~~A~~~Al~~~~ 89 (204)
T 1yk9_A 28 TAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVSGVPRPRP-----DHTQALADFALDMTN 89 (204)
T ss_dssp CCSSSTTTHHHHHHTTTTGGGTTSSCEECCCSSSCEEEESCCSSCCT-----THHHHHHTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCeEEEEECCCCCCh-----HHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999886532 356666778888877
No 12
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*
Probab=98.73 E-value=9.4e-09 Score=73.14 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhh
Q psy1896 5 TGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAV 47 (101)
Q Consensus 5 ~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~ 47 (101)
.+|++++.+||++|+.||+++.+|+.++++++||+||++.|.+
T Consensus 35 ~~~~~~~~~l~~~~~~~~~~i~~~gG~v~k~~GD~~ma~f~~p 77 (184)
T 1ybt_A 35 LGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFTSP 77 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSSSEEEEESCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCEEEeEeCCEEEEEeCCH
Confidence 4689999999999999999999999999999999999998866
No 13
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Probab=98.72 E-value=2.7e-08 Score=72.33 Aligned_cols=42 Identities=19% Similarity=0.459 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhh
Q psy1896 7 ASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVI 48 (101)
Q Consensus 7 p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~i 48 (101)
|++++.+||++|+.||+++.+|+.+++||+||+|||+.|.|.
T Consensus 31 ~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~ma~fg~p~ 72 (235)
T 1fx2_A 31 PDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKSPF 72 (235)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCCeEEEEeCCHH
Confidence 788999999999999999999999999999999999998765
No 14
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=98.43 E-value=8.3e-07 Score=62.56 Aligned_cols=42 Identities=17% Similarity=0.080 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHH-HHHhhhhcCeeEEEEeCCeeeeeehhh
Q psy1896 5 TGASMVVNFLNDLYTL-FDRIIKGYDVYKVETIGDAYMVNCLAV 47 (101)
Q Consensus 5 ~~p~evv~lLn~lf~~-FD~l~~~~~v~Ki~TIGd~Ym~~~g~~ 47 (101)
.+|++ +..||++|.. ||+++.+|+.++++++||+|||+.|.+
T Consensus 25 ~~~~~-~~~l~~~~~~~~~~~i~~~~G~v~k~~GD~~~a~f~~~ 67 (189)
T 3mr7_A 25 NETDV-LNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTA 67 (189)
T ss_dssp CCHHH-HHHHHHHHHHTHHHHHHHTTCEEEEEETTEEEEEESSH
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHcCCEEEEEeCCEEEEEeCCH
Confidence 34554 5889999998 999999999999999999999998753
No 15
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=74.33 E-value=3.5 Score=29.73 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 8 SMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 8 ~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
..+..-+.-++..|..++.++||.+|.++|+.|
T Consensus 117 ~~l~~Gv~~~~~~l~~~L~~~Gv~~i~~~G~~F 149 (197)
T 1dkg_A 117 SAMVEDIELTLKSMLDVVRKFGVEVIAETNVPL 149 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTEEEECCCSSBC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 346677888999999999999999999999844
No 16
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=73.04 E-value=3.2 Score=29.54 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 7 ASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 7 p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
...+..-+.-++..|..+++++||.+|.++|+.|
T Consensus 93 ~~~l~~Gv~m~~~~l~~~L~k~Gv~~i~~~Ge~F 126 (177)
T 3a6m_A 93 PESIRQGVRAIRDGFFRILAGLGVEEVPGEGEAF 126 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEECCCTTSBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 3456777888999999999999999999999854
No 17
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=62.07 E-value=7.1 Score=28.64 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCee
Q psy1896 7 ASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40 (101)
Q Consensus 7 p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Y 40 (101)
...+..-+.-++..|..++.++||.+|.++|+.|
T Consensus 135 ~~~l~eGvemi~k~l~~~L~k~Gv~~I~~~Ge~F 168 (213)
T 4ani_A 135 AKSILQGMEMVYRSLVDALKKEGVEAIEAVGKPF 168 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEECCCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 3456777888999999999999999999999854
No 18
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=48.61 E-value=15 Score=24.18 Aligned_cols=24 Identities=8% Similarity=0.396 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhhhcCeeEEEEe
Q psy1896 13 FLNDLYTLFDRIIKGYDVYKVETI 36 (101)
Q Consensus 13 lLn~lf~~FD~l~~~~~v~Ki~TI 36 (101)
++|+|...|+.++++||+..|.+.
T Consensus 12 ii~el~~~~~~~l~~Ygld~vgif 35 (103)
T 1ylx_A 12 VIEEFIDTLEPMMEAYGLDQVGIF 35 (103)
T ss_dssp HHHHHHHHHHHHHHHHTCSCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCcceeee
Confidence 689999999999999987776554
No 19
>3tek_A Thermodbp-single stranded DNA binding protein; leucine zipper; 2.00A {Thermoproteus tenax}
Probab=45.18 E-value=17 Score=25.11 Aligned_cols=34 Identities=18% Similarity=0.436 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHH-----HHHhhhhcCeeEEEEeCCeeeeeeh
Q psy1896 8 SMVVNFLNDLYTL-----FDRIIKGYDVYKVETIGDAYMVNCL 45 (101)
Q Consensus 8 ~evv~lLn~lf~~-----FD~l~~~~~v~Ki~TIGd~Ym~~~g 45 (101)
++.-+-+|++|.. |++++-+|++.| ||.+|...-
T Consensus 83 ~~Fr~ssre~Fd~~K~WFFnE~~pky~l~k----GDiFmiiTe 121 (148)
T 3tek_A 83 EKFRETSRELFDGLKKWFFEEAVPRYNLER----GDIFMISTE 121 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHTCCT----TCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhCCCc----CcEEEEEEE
Confidence 3444566777653 889999999998 999999754
No 20
>3lmb_A Uncharacterized protein; protein OLEI01261, unknown function, chlorobaculum tepidum T structural genomics, PSI2, MCSG; HET: MSE; 2.10A {Oleispira antarctica rb-8} SCOP: d.38.1.0
Probab=40.11 E-value=64 Score=22.08 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=36.9
Q ss_pred CCccCCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeee
Q psy1896 1 MRIATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNC 44 (101)
Q Consensus 1 ~~~s~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~ 44 (101)
|.-|.+|++....|.+.+..-+......|+. |..+++.+..+.
T Consensus 1 ~~~~~~p~~~~~~l~~~l~~~iP~~~~~Gi~-i~~~~~~~~~~~ 43 (165)
T 3lmb_A 1 MNASLTPDQVSKKLKQFFSDHLPISQFMGLE-IESYDGDTLILT 43 (165)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHCHHHHHHTCE-EEEECSSEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhcCchHHhCCcE-EEEEcCCEEEEE
Confidence 5678999999999999999999999998865 777888887765
No 21
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=31.11 E-value=43 Score=20.91 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=18.8
Q ss_pred CccCCHHHH---HHHHHHHHHHHHHhhh
Q psy1896 2 RIATGASMV---VNFLNDLYTLFDRIIK 26 (101)
Q Consensus 2 ~~s~~p~ev---v~lLn~lf~~FD~l~~ 26 (101)
|++++.+|+ ..-||.++..||.|-+
T Consensus 19 rL~l~eeE~~~~~~~l~~Il~~ve~L~e 46 (92)
T 3kfu_G 19 KIRLSPEEEALLLQDLKRILDFVDALPR 46 (92)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888776 6778888888887653
No 22
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=30.87 E-value=60 Score=20.64 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhh
Q psy1896 4 ATGASMVVNFLNDLYTLFDRIIKG 27 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~l~~~ 27 (101)
+++|+.+...|..++..|=.|+.+
T Consensus 43 ~~Tpq~L~~~l~~~h~~FiaLAa~ 66 (93)
T 3t98_B 43 HITPQDLSMAMQKIYQTFVALAAQ 66 (93)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999888876
No 23
>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM superfamily, biosynthetic protein; HET: MP5; 2.10A {Caulobacter crescentus} PDB: 3epm_A* 3epn_A*
Probab=26.44 E-value=46 Score=28.10 Aligned_cols=67 Identities=21% Similarity=0.211 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhhh---cCeeEEEEeCCeeeeeehhhhccchhhHHHHHHHHHHHHHHhhhcccCcccCCCCCCCC
Q psy1896 15 NDLYTLFDRIIKG---YDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSP 86 (101)
Q Consensus 15 n~lf~~FD~l~~~---~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~~I~~fAl~Mrkk~egsy~~~~p~~~~ 86 (101)
|=||+.||+||+- |+|. -.+||+.=--| ....+...-+.-+..+..++.+=++++.+- ..+-|-+.|
T Consensus 350 NplYe~FD~ileI~k~YDVt--lSLGDglRPG~--iaDA~D~AQ~~EL~~LGELtkrAwe~gVQV-MIEGPGHVP 419 (612)
T 3epo_A 350 NFLYERFDEICEIMRAYDVS--FSLGDGLRPGS--TADANDEAQFSELRTLGELTKVAWKHGVQV-MIEGPGHVA 419 (612)
T ss_dssp CHHHHTHHHHHHHHTTTTCE--EEECCTTCCSS--GGGTTCHHHHHHHHHHHHHHHHHHHTTCCE-EEECCCBCC
T ss_pred ChHHHHHHHHHHHHHHhCeE--EecccccCCCc--cccCCcHHHHHHHHHHHHHHHHHHHcCCcE-EEECCCCCC
Confidence 4499999999975 5553 27888654322 111122334444556777777777777665 444454443
No 24
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=25.64 E-value=61 Score=20.44 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=19.5
Q ss_pred CccCCHHHH---HHHHHHHHHHHHHhhh
Q psy1896 2 RIATGASMV---VNFLNDLYTLFDRIIK 26 (101)
Q Consensus 2 ~~s~~p~ev---v~lLn~lf~~FD~l~~ 26 (101)
|++++..|+ ..-||.++..||.|-+
T Consensus 17 rL~l~eeE~~~~~~~l~~Il~~ve~L~e 44 (100)
T 3ip4_C 17 RLQISPEETEEMANTLESILDFAKQNDS 44 (100)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 778888874 7778888888887654
No 25
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=24.99 E-value=70 Score=24.96 Aligned_cols=39 Identities=13% Similarity=0.247 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhcCe-eEEEEeCCeeeee
Q psy1896 5 TGASMVVNFLNDLYTLFDRIIKGYDV-YKVETIGDAYMVN 43 (101)
Q Consensus 5 ~~p~evv~lLn~lf~~FD~l~~~~~v-~Ki~TIGd~Ym~~ 43 (101)
.+|+++...+.++...-..+.++.|+ ++|...||....+
T Consensus 201 ~tpEqs~~e~e~l~~~ae~il~~LgLpyrv~~~~D~~f~~ 240 (346)
T 3mf2_A 201 GTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDPFFGR 240 (346)
T ss_dssp ESHHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCCCCCHH
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEccCCCcCc
Confidence 58999999999999999999999997 7888888866543
No 26
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Probab=24.78 E-value=45 Score=20.81 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=19.2
Q ss_pred CccCCHHHH---HHHHHHHHHHHHHhhh
Q psy1896 2 RIATGASMV---VNFLNDLYTLFDRIIK 26 (101)
Q Consensus 2 ~~s~~p~ev---v~lLn~lf~~FD~l~~ 26 (101)
|++.+.+|+ ..-||.++..||.|-+
T Consensus 15 rL~l~eee~~~~~~~l~~Il~~ve~L~e 42 (94)
T 3h0l_C 15 RLELKEEEIEVFQKQLSDILDFIDQLKE 42 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTTGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778888886 6778888888877654
No 27
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=24.00 E-value=48 Score=21.40 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=16.7
Q ss_pred CccCCHHHHHHHHHHHHHHHHH
Q psy1896 2 RIATGASMVVNFLNDLYTLFDR 23 (101)
Q Consensus 2 ~~s~~p~evv~lLn~lf~~FD~ 23 (101)
|+.++++++ ..|.+.|..||.
T Consensus 7 ~~~Lt~~qi-~elk~~F~~~D~ 27 (153)
T 3i5g_B 7 RVKLSQRQM-QELKEAFTMIDQ 27 (153)
T ss_dssp CTTCCHHHH-HHHHHHHHHHCC
T ss_pred ccCCCHHHH-HHHHHHHHHHCC
Confidence 566788886 678899999985
No 28
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=23.43 E-value=30 Score=16.88 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=9.2
Q ss_pred HHHHHhhhhcCe
Q psy1896 19 TLFDRIIKGYDV 30 (101)
Q Consensus 19 ~~FD~l~~~~~v 30 (101)
..||.|.++||-
T Consensus 4 aEFaaIm~~hg~ 15 (23)
T 3dd7_B 4 AEFASLFDTLDS 15 (26)
T ss_pred hHHHHHHHHHhH
Confidence 578888888863
No 29
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=23.38 E-value=2.3e+02 Score=20.93 Aligned_cols=50 Identities=18% Similarity=0.086 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhcCeeEEEEeCCeeeeeehhhhccchhhHHHHHH
Q psy1896 5 TGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAIL 60 (101)
Q Consensus 5 ~~p~evv~lLn~lf~~FD~l~~~~~v~Ki~TIGd~Ym~~~g~~iag~~v~ll~ai~ 60 (101)
++++.+-+.++-| ..|-++++.|++.+|..+ |.++...+.+...++..+.
T Consensus 50 ls~eai~r~~~~L-~~f~~~~~~~~v~~v~~v-----ATsA~R~A~N~~~fl~~i~ 99 (315)
T 3mdq_A 50 ITEEAMDRALDTL-KKFRVILDEHAVVHVIAT-----GTSAVRSGSNKQVLIDRIK 99 (315)
T ss_dssp CCHHHHHHHHHHH-HHHHHHHHHTTCCEEEEE-----ECHHHHHCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHH-HHHHHHHHHcCCCEEEEE-----eeHHHHcCcCHHHHHHHHH
Confidence 4566666666666 999999999999775433 3445555555555555554
No 30
>3v38_A Carboxypeptidase T; hydrolase; HET: GOL; 1.50A {Thermoactinomyces vulgaris} PDB: 1obr_A 3qnv_A 3prt_A
Probab=22.86 E-value=55 Score=24.71 Aligned_cols=27 Identities=22% Similarity=0.538 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhhc-CeeEEEEeCCee
Q psy1896 14 LNDLYTLFDRIIKGY-DVYKVETIGDAY 40 (101)
Q Consensus 14 Ln~lf~~FD~l~~~~-~v~Ki~TIGd~Y 40 (101)
+++|...+|.|.++| ++-++.+||.+|
T Consensus 12 y~ei~~~l~~L~~~~p~~v~~~~iG~S~ 39 (326)
T 3v38_A 12 YNEMVNKINTVASNYPNIVKKFSIGKSY 39 (326)
T ss_dssp HHHHHHHHHHHHHHCTTTEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeeEcc
Confidence 466777777888777 566777887654
No 31
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=22.23 E-value=65 Score=18.89 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcC
Q psy1896 9 MVVNFLNDLYTLFDRIIKGYD 29 (101)
Q Consensus 9 evv~lLn~lf~~FD~l~~~~~ 29 (101)
.-+..||+||..+-.++...|
T Consensus 13 ~~i~eL~~iF~dla~lV~eQg 33 (71)
T 2nps_B 13 ADILDVNQIFKDLAMMIHDQG 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 346789999999999987754
No 32
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=21.73 E-value=68 Score=18.73 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcC
Q psy1896 9 MVVNFLNDLYTLFDRIIKGYD 29 (101)
Q Consensus 9 evv~lLn~lf~~FD~l~~~~~ 29 (101)
.-+.-||+||..+-.++...|
T Consensus 17 ~~i~eL~~iF~dla~lV~eQg 37 (69)
T 3b5n_B 17 KSMAELTQLFNDMEELVIEQQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999999987654
No 33
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=20.75 E-value=1.1e+02 Score=18.33 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=17.0
Q ss_pred CCccCCHHHHHHHHHHHHHHHHHh
Q psy1896 1 MRIATGASMVVNFLNDLYTLFDRI 24 (101)
Q Consensus 1 ~~~s~~p~evv~lLn~lf~~FD~l 24 (101)
|.-+.++.++ .-|.++|..||.-
T Consensus 1 m~~~l~~~~~-~~l~~~F~~~D~d 23 (153)
T 3ox6_A 1 MDRSLRPEEI-EELREAFREFDKD 23 (153)
T ss_dssp CCSCCCHHHH-HHHHHHHHHHHHH
T ss_pred CcccCCHHHH-HHHHHHHHHhCCC
Confidence 3446778876 7788899999863
No 34
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=20.60 E-value=70 Score=17.87 Aligned_cols=18 Identities=6% Similarity=0.266 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1896 5 TGASMVVNFLNDLYTLFD 22 (101)
Q Consensus 5 ~~p~evv~lLn~lf~~FD 22 (101)
...++-+..|.++|..||
T Consensus 3 ~~~~~~~~~l~~~F~~~D 20 (90)
T 1k8u_A 3 MPLDQAIGLLVAIFHKYS 20 (90)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHh
Confidence 344566678888999998
No 35
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=20.54 E-value=75 Score=18.34 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcC
Q psy1896 9 MVVNFLNDLYTLFDRIIKGYD 29 (101)
Q Consensus 9 evv~lLn~lf~~FD~l~~~~~ 29 (101)
.-+.-||+||..+-.++...|
T Consensus 16 ~~i~eL~~iF~dla~lV~eQg 36 (65)
T 1gl2_B 16 ADIMDINEIFKDLGMMIHEQG 36 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999987654
No 36
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=20.48 E-value=73 Score=18.91 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcC
Q psy1896 9 MVVNFLNDLYTLFDRIIKGYD 29 (101)
Q Consensus 9 evv~lLn~lf~~FD~l~~~~~ 29 (101)
.-+..||+||..+-.++...|
T Consensus 17 ~~i~eL~~iF~dla~lV~eQg 37 (77)
T 1jth_B 17 NSIRELHDMFMDMAMLVESQG 37 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 346789999999999998764
No 37
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=20.45 E-value=47 Score=20.01 Aligned_cols=16 Identities=19% Similarity=0.636 Sum_probs=12.4
Q ss_pred cCCHHHHHHHHHHHHHHHHH
Q psy1896 4 ATGASMVVNFLNDLYTLFDR 23 (101)
Q Consensus 4 s~~p~evv~lLn~lf~~FD~ 23 (101)
|++++| |.++|..||.
T Consensus 1 sls~~e----l~~~F~~~D~ 16 (145)
T 2bl0_B 1 TASADQ----IQECFQIFDK 16 (145)
T ss_dssp CCCHHH----HHHHHHHHCT
T ss_pred CCCHHH----HHHHHHHhCC
Confidence 567777 7888888885
No 38
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=20.44 E-value=75 Score=18.43 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcC
Q psy1896 9 MVVNFLNDLYTLFDRIIKGYD 29 (101)
Q Consensus 9 evv~lLn~lf~~FD~l~~~~~ 29 (101)
.-+.-||+||..+-.++...|
T Consensus 19 ~~i~eL~~iF~dla~lV~eQg 39 (68)
T 1n7s_B 19 NSIRELHDMFMDMAMLVESQG 39 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999999987654
No 39
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=20.23 E-value=60 Score=19.62 Aligned_cols=12 Identities=25% Similarity=0.730 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHH
Q psy1896 12 NFLNDLYTLFDR 23 (101)
Q Consensus 12 ~lLn~lf~~FD~ 23 (101)
.+|+.||..|++
T Consensus 8 ~l~d~lF~~Fek 19 (69)
T 1bby_A 8 HVLDMLFSAFEK 19 (69)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 468888988864
Done!