RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1896
(101 letters)
>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain. Syndecans are transmembrane
heparin sulfate proteoglycans which are implicated in
the binding of extracellular matrix components and
growth factors.
Length = 207
Score = 111 bits (279), Expect = 3e-32
Identities = 35/55 (63%), Positives = 40/55 (72%), Gaps = 3/55 (5%)
Query: 46 AVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKN-SNREF 99
AVI G VVGLL A+ +VMF+VYRM+KKDEGSYALEEPK A+ Y K EF
Sbjct: 155 AVIAGGVVGLLFAVFLVMFLVYRMKKKDEGSYALEEPK--QANAGYQKPAKQEEF 207
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 65.7 bits (161), Expect = 1e-14
Identities = 23/34 (67%), Positives = 27/34 (79%)
Query: 9 MVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMV 42
VVN LNDLY+ FD+II + YKV+TIGDAYMV
Sbjct: 58 QVVNLLNDLYSRFDQIIDRHGGYKVKTIGDAYMV 91
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase
catalytic domain.
Length = 184
Score = 56.9 bits (138), Expect = 2e-11
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 9 MVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMV 42
+V LNDLYT FD ++ + VYKV+TIGDAYM
Sbjct: 30 ELVRLLNDLYTRFDELLDKHGVYKVKTIGDAYMA 63
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic
and prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions
to bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 51.4 bits (124), Expect = 2e-09
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 6 GASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMV 42
G +V LN+ ++ FD II+ + +TIGDA M
Sbjct: 20 GPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMA 56
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be
divided into two major groups; the mononucleotidyl
cyclases (MNC's) and the diguanylate cyclases (DGC's).
The MNC's, which include the adenylate cyclases (AC's)
and the guanylate cyclases (GC's), have a conserved
cyclase homology domain (CHD), while the DGC's have a
conserved GGDEF domain, named after a conserved motif
within this subgroup. Their products, cyclic guanylyl
and adenylyl nucleotides, are second messengers that
play important roles in eukaryotic signal transduction
and prokaryotic sensory pathways.
Length = 133
Score = 38.5 bits (90), Expect = 9e-05
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 4 ATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNC 44
A G LN+L FD +I+ K++TIGD +MV
Sbjct: 18 ALGPDEGDELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVS 58
>gnl|CDD|128590 smart00294, 4.1m, putative band 4.1 homologues' binding motif.
Length = 19
Score = 33.3 bits (77), Expect = 0.001
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 67 YRMRKKDEGSYALEEPK 83
YR + +DEGSY EPK
Sbjct: 2 YRYKHRDEGSYHTHEPK 18
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms].
Length = 227
Score = 29.8 bits (67), Expect = 0.15
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 6 GASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAI 59
G +V LN + ++ + V+ IGD ++ + G L A+
Sbjct: 65 GDEALVELLNLYFDAVAEVVARHGGRVVKFIGDGFL-----AVFGRPSPLEDAV 113
>gnl|CDD|215376 PLN02699, PLN02699, Bifunctional molybdopterin
adenylyltransferase/molybdopterin molybdenumtransferase.
Length = 659
Score = 29.4 bits (66), Expect = 0.30
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 15/77 (19%)
Query: 27 GYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRK------KDEGSYALE 80
G D+ K DA ++ +G + +GLL + V M VY DE L
Sbjct: 144 GCDIEK-----DAKVLKAGERLGASEIGLLATVGVTMVKVYPRPTVAILSTGDE----LV 194
Query: 81 EPKRSPASNSYMKNSNR 97
EP +++SNR
Sbjct: 195 EPTTGTLGRGQIRDSNR 211
>gnl|CDD|236800 PRK10935, PRK10935, nitrate/nitrite sensor protein NarQ;
Provisional.
Length = 565
Score = 28.7 bits (65), Expect = 0.49
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 45 LAVIGGAVVGLLCAILVVMFIVYRMRKK 72
LA I +GL+ + +V F V R++
Sbjct: 150 LAAISL--LGLILILTLVFFTVRFTRRQ 175
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl
cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans
isomerases, also known as cyclophilins, share this
domain of about 109 amino acids. Cyclophilins have been
found in all organisms studied so far and catalyze
peptidyl-prolyl isomerisation during which the peptide
bond preceding proline (the peptidyl-prolyl bond) is
stabilised in the cis conformation. Mammalian
cyclophilin A (CypA) is a major cellular target for the
immunosuppressive drug cyclosporin A (CsA). Other roles
for cyclophilins may include chaperone and cell
signalling function.
Length = 144
Score = 27.6 bits (62), Expect = 0.77
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 12 NFLNDLYTLFDRIIKGYDVYKVETIGDAY 40
L+ YT+F R+++G DV VE I
Sbjct: 103 PHLDGGYTVFGRVVEGMDV--VEKIEKVE 129
>gnl|CDD|220287 pfam09546, Spore_III_AE, Stage III sporulation protein AE
(spore_III_AE). This represents the stage III
sporulation protein AE, which is encoded in a spore
formation operon spoIIIAABCDEFGH under the control of
sigma G. A comparative genome analysis of all sequenced
genomes of Firmicutes shows that the proteins are
strictly conserved among the sub-set of
endospore-forming species.
Length = 328
Score = 27.5 bits (62), Expect = 1.2
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 30 VYK-----VETIGDAYMVNCLAVIGGAVVGLLCAILVV--MF 64
+YK VE IGD +VNCL +G +++ + A+ V MF
Sbjct: 273 IYKLAAALVEPIGDKRIVNCLNGVGNSLILIFAAVASVSLMF 314
>gnl|CDD|165792 PLN00413, PLN00413, triacylglycerol lipase.
Length = 479
Score = 27.3 bits (60), Expect = 1.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 48 IGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPAS-NSYMKNSNREF 99
+GGA+ L A+L+ M M ++ EG Y +P+ +MK+ +EF
Sbjct: 293 LGGALAILFTAVLI-MHDEEEMLERLEGVYTFGQPRVGDEDFGIFMKDKLKEF 344
>gnl|CDD|179620 PRK03642, PRK03642, putative periplasmic esterase; Provisional.
Length = 432
Score = 27.1 bits (60), Expect = 1.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 66 VYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 101
+ KK +GS L P ++ + Y SN + YA
Sbjct: 73 AWGYAKKYDGSTLLAHPVKATTNTMYDLASNTKMYA 108
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 26.8 bits (60), Expect = 1.8
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 17 LYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVV--MFIVYRMRKK 72
L L + I + + + D ++ +I V + C ++ + + +RKK
Sbjct: 136 LVVLKNTDIYYDNEENMPVVADKDVIQRFTLIALIFVFVTCIYCIIAYGALFFVIRKK 193
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 26.5 bits (59), Expect = 2.4
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 46 AVIGGAVVGLLCAI 59
+IGG + GL CA+
Sbjct: 4 IIIGGGLAGLSCAL 17
>gnl|CDD|232880 TIGR00220, mscL, large conductance mechanosensitive channel
protein. Protein encodes a channel which opens in
response to a membrane stretch force. Probably serves as
an osmotic gauge. Carboxy terminus tends to be more
divergent across species with a high degree of sequence
conservation found at the N-terminus [Cellular
processes, Adaptations to atypical conditions].
Length = 127
Score = 26.0 bits (57), Expect = 3.0
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 8 SMVVNFLNDLYT-LFDRIIKGYDVYKVE-TIGDAYMVNCLAVIGGAVVGLLCAILVVMFI 65
+V + + D+ L ++ G D + T+ DA V ++ L I +F+
Sbjct: 29 KIVSSLVADIIMPLLGLLLGGIDFSGLSFTLQDAQAVGKYGEFIQNIINFLI-IAFAIFM 87
Query: 66 VYRMRKKDEGSYALEEPKRSPA 87
+ + K +EE + A
Sbjct: 88 IIKAINKLRRKKKVEEEAAAEA 109
>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase
[Amino acid transport and metabolism].
Length = 421
Score = 25.8 bits (57), Expect = 4.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 46 AVIGGAVVGLLCAI 59
A+IGG + GL C +
Sbjct: 6 AIIGGGLAGLTCGL 19
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme
metabolism / Energy production and conversion].
Length = 387
Score = 25.8 bits (57), Expect = 4.3
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 46 AVIGGAVVGLLCAIL 60
A++G GL A+
Sbjct: 6 AIVGAGPAGLALALA 20
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 26.0 bits (58), Expect = 4.3
Identities = 5/40 (12%), Positives = 15/40 (37%)
Query: 48 IGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPA 87
+ G L ++++ F++ + L E + +
Sbjct: 440 LIKLAAGALLILILIFFVLRPRLRPLLPEEELAEEEAAAE 479
>gnl|CDD|116649 pfam08039, Mit_proteolip, Mitochondrial proteolipid. This family
consists of proteins with similarity to the
mitochondrial proteolipids. Mitochondrial proteolipid
consists of about 60 amino acids residues and is about
6.8 kDa in size.
Length = 60
Score = 24.6 bits (53), Expect = 4.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 64 FIVYRMRKKDEGSYALEEPKRSPA 87
FIVY++R D+ S AL+ +PA
Sbjct: 33 FIVYKIRAADKRSKALKASAAAPA 56
>gnl|CDD|163482 TIGR03770, anch_rpt_perm, anchored repeat-type ABC transporter,
permease subunit. This protein family is the permease
subunit of binding protein-dependent ABC transporter
complex that strictly co-occurs with TIGR03769.
TIGRFAMs model TIGR03769 describes a protein domain
that occurs singly or as one of up to three repeats in
proteins of a number of Actinobacteria, including
Propionibacterium acnes KPA171202. The TIGR03769 domain
occurs both in the adjacent gene for the
substrate-binding protein and in additional (often
nearby) proteins, often with LPXTG-like sortase
recognition signals. Homologous permease subunits
outside the scope of this family include manganese
transporter MntB in Synechocystis sp. PCC 6803 and
chelated iron transporter subunits. The function of
this transporter complex is unknown [Transport and
binding proteins, Unknown substrate].
Length = 270
Score = 25.9 bits (57), Expect = 4.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 39 AYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRKKD 73
A+ + ++GGAV G+ AIL+ +F R K+D
Sbjct: 61 AFALQGSLLLGGAVAGVATAILIAVFSQNRRLKED 95
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a WD40 domain. This group consists of several
hypothetical and putative eukaryotic and bacterial
proteins which have a cyclophilin domain and a WD40
domain. Function of the protein is not known.
Length = 148
Score = 25.5 bits (56), Expect = 4.5
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 13 FLNDLYTLFDRIIKGYDV 30
+L++ +T+F R++KG DV
Sbjct: 107 WLDNKHTVFGRVVKGMDV 124
>gnl|CDD|183093 PRK11346, PRK11346, hypothetical protein; Provisional.
Length = 285
Score = 25.6 bits (56), Expect = 4.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 24 IIKGYDVYKVETIGDAYMVNCLAVIGGAVVG 54
I KG V + + D + N + +IGGA+VG
Sbjct: 176 IKKGLTVTSQQQVFDFMIGNHVYIIGGAIVG 206
>gnl|CDD|232845 TIGR00145, TIGR00145, FTR1 family protein. A characterized member
from yeast acts as oxidase-coupled high affinity iron
transporter. Note that the apparent member from E. coli
K12-MG1655 has a frameshift by homology with member
sequences from other species [Unknown function,
General].
Length = 283
Score = 25.8 bits (57), Expect = 4.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 46 AVIGGAVVGLLCAILVVMFIVY 67
A IG AV GL+ A++V + +
Sbjct: 152 AYIGPAVAGLIVAVVVGVLLYR 173
>gnl|CDD|213055 cd12094, TM_ErbB2, Transmembrane domain of ErbB2, a Protein
Tyrosine Kinase. PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. ErbB2 (HER2, HER2/neu)
is a member of the EGFR (HER, ErbB) subfamily of
proteins, which are receptor PTKs (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane (TM) helix, and a cytoplasmic region with
a tyr kinase domain and a regulatory C-terminal tail.
It is activated by ligand-induced dimerization, leading
to the phosphorylation of tyr residues in the
C-terminal tail, which serve as binding sites for
downstream signaling molecules. ErbB2 does not bind to
any known EGFR subfamily ligands, but contributes to
the kinase activity of all possible heterodimers. It
acts as the preferred partner of other ligand-bound
EGFR proteins and functions as a signal amplifier, with
the ErbB2-ErbB3 heterodimer being the most potent pair
in mitogenic signaling. The TM domain not only serves
as a membrane anchor, but also plays an important role
in receptor dimerization and optimal activation.
Mutations in the TM domain of ErbB2 have been
associated with increased breast cancer risk. ErbB2
plays an important role in cell development,
proliferation, survival and motility. Overexpression of
ErbB2 results in its activation and downstream
signaling, even in the absence of ligand. ErbB2
overexpression, mainly due to gene amplification, has
been shown in a variety of human cancers. Its role in
breast cancer is especially well-documented. ErbB2 is
up-regulated in about 25% of breast tumors and is
associated with increases in tumor aggressiveness,
recurrence and mortality. ErbB2 is a target for
monoclonal antibodies and small molecule inhibitors,
which are being developed as treatments for cancer. The
first humanized antibody approved for clinical use is
Trastuzumab (Herceptin), which is being used in
combination with other therapies to improve the
survival rates of patients with HER2-overexpressing
breast cancer.
Length = 44
Score = 24.1 bits (52), Expect = 5.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 46 AVIGGAVVGLLCAILVVMFIVYRMRKKDE 74
++I G V LL +L+V+F + R++ +
Sbjct: 13 SIIAGVVGILLVVVLLVVFGILIKRRRQK 41
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 25.6 bits (57), Expect = 5.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 15/42 (35%)
Query: 42 VNCLAVIGGAVVGLLCA--------------ILVVMFIVYRM 69
+ + VIGGA+VGLL +L V IVY++
Sbjct: 400 IPPVTVIGGAIVGLLAVLADLLGALGGGTGLLLTVS-IVYQL 440
>gnl|CDD|213052 cd12087, TM_EGFR-like, Transmembrane domain of the Epidermal
Growth Factor Receptor family of Protein Tyrosine
Kinases. PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EGFR (HER, ErbB)
subfamily members include EGFR (HER1, ErbB1), HER2
(ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar
proteins. They are receptor PTKs (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane (TM) helix, and a cytoplasmic region with
a tyr kinase domain and a regulatory C-terminal tail.
They are activated by ligand-induced dimerization,
resulting in the phosphorylation of tyr residues in the
C-terminal tail, which serve as binding sites for
downstream signaling molecules. Collectively, they can
recognize a variety of ligands including EGF, TGFalpha,
and neuregulins, among others. All four subfamily
members can form homo- or heterodimers. HER3 contains
an impaired kinase domain and depends on its
heterodimerization partner for activation. EGFR
subfamily members are involved in signaling pathways
leading to a broad range of cellular responses
including cell proliferation, differentiation,
migration, growth inhibition, and apoptosis. The TM
domain not only serves as a membrane anchor, but also
plays an important role in receptor dimerization and
optimal activation. Mutations in the TM domain of EGFR
family RTKs have been associated with increased breast
cancer risk.
Length = 38
Score = 23.6 bits (52), Expect = 5.8
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 46 AVIGGAVVGLLCAILVVMFIVYRMRKK 72
++ G V GLL +++ + + R++
Sbjct: 7 SIAAGVVGGLLVLVILGLIVFLFRRRR 33
>gnl|CDD|217447 pfam03239, FTR1, Iron permease FTR1 family.
Length = 284
Score = 25.4 bits (56), Expect = 6.6
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 43 NCLAVIGGAVVGLLCAILVVMFIVY 67
A G V+G A+++ + I
Sbjct: 152 RASAYPLGVVLGAATAVVLGVLIYR 176
>gnl|CDD|237495 PRK13765, PRK13765, ATP-dependent protease Lon; Provisional.
Length = 637
Score = 25.3 bits (56), Expect = 7.5
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 20 LFDRII---KGYDVYKVE--TIGDAYMVNCLAVIGG 50
L DR I K Y+++ E +G VN LAV+G
Sbjct: 407 LADRYIERRKDYELFVTEGGEVG---RVNGLAVMGE 439
>gnl|CDD|219141 pfam06697, DUF1191, Protein of unknown function (DUF1191). This
family contains hypothetical plant proteins of unknown
function.
Length = 278
Score = 25.1 bits (55), Expect = 7.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 46 AVIGGAVVGLLCAILVVMFIVYRMRKKDEG 75
V+GG + L A+LV + Y+ +K+ E
Sbjct: 218 GVVGGVGLLGLLAVLVARLVRYKRKKRREE 247
>gnl|CDD|192905 pfam11982, DUF3483, Domain of unknown function (DUF3483). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is about 230
amino acids in length. This domain is found associated
with pfam02754.
Length = 224
Score = 25.0 bits (55), Expect = 7.8
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 38 DAYMVNC-LAVIGGAVVGLLCAILVVMFIVY 67
D Y+ +A GG V+ + ILV +
Sbjct: 60 DKYISRTHVATAGGFVLASVLVILVYGLGLA 90
>gnl|CDD|163005 TIGR02762, TraL_TIGR, type IV conjugative transfer system protein
TraL. This protein is part of the type IV secretion
system for conjugative plasmid transfer. The function
of the TraL protein is unknown [Cellular processes,
Conjugation].
Length = 95
Score = 24.3 bits (53), Expect = 9.2
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 46 AVIGGAVVGLLCAILVVMFIVYRMR--KKDEGSYAL 79
+ G A++GL+ VM I R+R K EG L
Sbjct: 34 ILSGKALIGLILG-AAVMLIWKRLRRIKGGEGENFL 68
>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in
exopolysaccharide biosynthesis [Cell envelope
biogenesis, outer membrane].
Length = 458
Score = 25.1 bits (55), Expect = 9.4
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 45 LAVIGGAVVGLLCAILVVMFIVYRMR 70
L + G V+GL + + R
Sbjct: 429 LILALGGVLGLFLGLGAALLRERLRR 454
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 24.8 bits (55), Expect = 9.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 45 LAVIGGAVVGLLCAI 59
+ VIGG + GL A+
Sbjct: 5 VLVIGGGLAGLTAAL 19
>gnl|CDD|227703 COG5416, COG5416, Uncharacterized integral membrane protein
[Function unknown].
Length = 98
Score = 24.3 bits (53), Expect = 10.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 45 LAVIGGAVVGLLCAILVVMFIVYRMRK 71
L ++G AVVG L A+ + + ++R+
Sbjct: 63 LVILGAAVVGALIAMFAGIARILQLRR 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.400
Gapped
Lambda K H
0.267 0.0820 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,160,837
Number of extensions: 435581
Number of successful extensions: 1236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1230
Number of HSP's successfully gapped: 99
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.0 bits)