RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1896
(101 letters)
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide,
structural genomics, structural genomics conso SGC,
CGMP biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 77.7 bits (192), Expect = 3e-19
Identities = 21/36 (58%), Positives = 23/36 (63%)
Query: 7 ASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMV 42
V+ LN LYT FD+ DVYKVETIGDAY V
Sbjct: 34 PLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCV 69
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 74.2 bits (183), Expect = 4e-18
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 10 VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMV 42
+V FL+ LY+ FD ++ + + K+E GD+YMV
Sbjct: 33 LVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMV 65
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 69.7 bits (171), Expect = 2e-16
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 4 ATGASMVVNFLNDLYTLFDRIIKGYD---VYKVETIGDAYMV 42
GA +VN LNDLYT FD + VYKVET+GD YM
Sbjct: 33 GEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMT 74
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 68.8 bits (169), Expect = 6e-16
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 7 ASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMV 42
A +V LN+L+ FD++ +++ +GD Y
Sbjct: 54 AQELVMTLNELFARFDKLAAENHCLRIKILGDCYYC 89
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET:
FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB:
1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B*
1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B*
3g82_B* 3maa_B* 1cul_B*
Length = 220
Score = 68.0 bits (167), Expect = 1e-15
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 10 VVNFLNDLYTLFDRII---KGYDVYKVETIGDAYMV 42
+ LN++ FD ++ K V K++TIG YM
Sbjct: 41 CLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMA 76
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase,
dimethylarsenic, lyase, membrane, transmembrane; 2.55A
{Chlamydomonas reinhardtii} PDB: 3et6_B
Length = 190
Score = 64.3 bits (157), Expect = 2e-14
Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 10 VVNFLNDLYTLFDRIIKGY-DVYKVETIGDAYMV 42
V + L++LY FD I+ Y +YKVETIGDAYMV
Sbjct: 32 VXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMV 65
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 51.9 bits (124), Expect = 2e-09
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 6 GASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAI 59
A + + L L + V+ ++TIGDA M V L +
Sbjct: 234 SAEELGHLAGRLAGLARDLTA-PPVWFIKTIGDAVM----LVCPDPAPLLDTVL 282
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 51.4 bits (123), Expect = 2e-09
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 10 VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMV 42
+ + + + + +I Y Y+V+T+GD++M+
Sbjct: 34 MPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMI 66
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.003
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 71 KKDEGSYALEEPKRSPA 87
KK + S L +PA
Sbjct: 23 KKLQASLKLYADDSAPA 39
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.005
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 17/51 (33%)
Query: 68 RMRKKDEGSYALEEPKRSPASNS----YM---------KNSNR----EFYA 101
R+++ D S +E+ R A K +NR FY
Sbjct: 97 RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium
tuberculosis} PDB: 1ybu_A*
Length = 184
Score = 33.4 bits (77), Expect = 0.005
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 6 GASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAI 59
G + L++ T+ I+ + +V T GD ++ A + CA
Sbjct: 36 GDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFV----ATFTSPSAAIACAD 85
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling
protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Length = 28
Score = 29.0 bits (64), Expect = 0.040
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 68 RMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA 101
RM+KKDEGSY L + P Y K EFYA
Sbjct: 1 RMKKKDEGSYDL---GKKPI---YKKAPTNEFYA 28
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal,
immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP:
b.1.1.2 d.19.1.1
Length = 315
Score = 31.1 bits (71), Expect = 0.044
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 45 LAVIGGAVVGLLCAILVVMFIVYRMRKKDEG 75
+ +I V+ +L + V++ ++R R +
Sbjct: 283 VGLIVFIVLIMLVVVGAVVYYIWRRRSAYQD 313
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain;
LCMV, MHC class I, immune escape, immune system; 1.99A
{Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A
1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A
1nez_A*
Length = 348
Score = 26.7 bits (59), Expect = 1.3
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 47 VIGGAVVGLLCAIL-VVMFIVYRMRK---KDEGSYA 78
V V+G VV F++ R+ G YA
Sbjct: 287 VAVLVVLGAAIVTGAVVAFVMKMRRRNTGGKGGDYA 322
>2wy3_A MHC class I polypeptide-related sequence B; immune system-viral
protein complex, immune response, innate immunity,
structural mimicry; HET: NAG PEU; 1.80A {Homo sapiens}
PDB: 1je6_A 1hyr_C 1b3j_A*
Length = 319
Score = 26.5 bits (59), Expect = 1.4
Identities = 3/29 (10%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 47 VIGGAVVGLLCAILVVMFIVYRMRKKDEG 75
+ A+ + I++++ + +K
Sbjct: 290 YVSAAMPCFV--IIIILCVPCCKKKTSAA 316
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 2.0
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 47 VIGGAVVGL--LCAILVVMFIVYRMRKKD----EGSYALEEPK 83
V G + L + +L + +++K D + S +LEE +
Sbjct: 1854 VAAGDLRALDTVTNVLNFI----KLQKIDIIELQKSLSLEEVE 1892
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 26.2 bits (58), Expect = 2.1
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 13 FLNDLYTLFDRIIKGYDVY----KVET 35
+L+ +T+F R+ +G + VET
Sbjct: 121 WLDGKHTIFGRVCQGIGMVNRVGMVET 147
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 25.8 bits (57), Expect = 2.8
Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 14 LNDLYTLFDRIIKGYDVYKVETIGDA 39
L+ +T+F R++ G+DV + + +
Sbjct: 130 LDKKHTIFGRVVGGFDV--LTAMENV 153
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 25.6 bits (57), Expect = 2.9
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 14 LNDLYTLFDRIIKGYDVY----KVET 35
L+ +T+F R+ +G + VET
Sbjct: 122 LDGKHTIFGRVCQGIGMVNRVGMVET 147
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 25.4 bits (56), Expect = 3.0
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 13 FLNDLYTLFDRIIKGYDVYKVETIGDA 39
LN+ +T+F R++ G DV +
Sbjct: 128 HLNNKHTIFGRVVGGLDV--LRQWEKL 152
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 25.3 bits (56), Expect = 3.2
Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 14 LNDLYTLFDRIIKGYDVYKVETIGDA 39
LN Y +F ++I G++ + T+ +
Sbjct: 131 LNGEYVIFGKLIDGFET--LNTLENC 154
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 25.2 bits (56), Expect = 3.7
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 14 LNDLYTLFDRIIKGYDVYKVETIGDA 39
L+ +T+F ++ +G + V I
Sbjct: 116 LDFKHTVFGKVTQGSKI--VLDIEKV 139
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER;
HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 25.4 bits (55), Expect = 3.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 46 AVIGGAVVGLLCAI 59
VIG V+GL A+
Sbjct: 4 VVIGAGVIGLSTAL 17
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 25.4 bits (55), Expect = 3.9
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 46 AVIGGAVVGLLCAI 59
V+G V+GL A+
Sbjct: 10 VVLGSGVIGLSSAL 23
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 24.9 bits (55), Expect = 4.3
Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 14 LNDLYTLFDRIIKGYDVYKVETIGDA 39
L++ +T+F R+ KG +V V+ I +
Sbjct: 132 LDNKHTVFGRVTKGMEV--VQRISNV 155
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 24.8 bits (55), Expect = 4.5
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 14 LNDLYTLFDRIIKGYDVYKVETIGDA 39
L+ YT+F ++I G + ++ +
Sbjct: 111 LDMKYTVFGKVIDGLET--LDELEKL 134
>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM
superfamily, biosynthetic protein; HET: MP5; 2.10A
{Caulobacter crescentus} PDB: 3epm_A* 3epn_A*
Length = 612
Score = 24.7 bits (54), Expect = 6.4
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 15 NDLYTLFDR---IIKGYDVYKVETIGDAYMVNCLA 46
N LY FD I++ YDV ++GD A
Sbjct: 350 NFLYERFDEICEIMRAYDV--SFSLGDGLRPGSTA 382
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 24.6 bits (53), Expect = 7.1
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 12 NFLNDLYTLFDRIIKGYDVYKVETI--GD 38
N L+ Y +F + D + + GD
Sbjct: 320 NILDGRYAVFGYVTDNEDF--LADLKVGD 346
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX,
structural genomics, helic binding, HOST-virus
interaction, hydrolase; 1.85A {Homo sapiens} PDB:
2g9n_A*
Length = 237
Score = 24.5 bits (54), Expect = 7.5
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 33 VETIGDAYM-VNCLAVIGGAVVG 54
+ +GD YM C A IGG V
Sbjct: 118 ILALGD-YMGATCHACIGGTNVR 139
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 24.2 bits (53), Expect = 7.8
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 14 LNDLYTLFDRIIKGYDVYKVETIGDA 39
L+ +T+F R+ K +E I
Sbjct: 149 LDGKHTIFARVSKNMTC--IENIASV 172
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 24.4 bits (54), Expect = 8.8
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 46 AVIGGAVVGLLCA 58
VIG VVGL A
Sbjct: 8 IVIGAGVVGLAIA 20
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family,
gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 1qva_A
Length = 224
Score = 24.0 bits (53), Expect = 9.2
Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 33 VETIGDAYM-VNCLAVIGGAVVG 54
V + +M + A IGG
Sbjct: 102 VMALAF-HMDIKVHACIGGTSFV 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.400
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,536,833
Number of extensions: 81201
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 42
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)