RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1896
(101 letters)
>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase
{Trypanosome (Trypanosoma brucei), different isoform
[TaxId: 5691]}
Length = 235
Score = 38.0 bits (87), Expect = 5e-05
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 10 VVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNC 44
+ + + + + +I Y Y+V+T+GD++M+
Sbjct: 34 MPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIAS 68
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 25.2 bits (54), Expect = 1.4
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 12 NFLNDLYTLFDRIIKGYDVYKVETIGDA 39
+L+ +F RII + ++ I +
Sbjct: 138 EWLDGKNVVFGRIIDNDSLLLLKKIENV 165
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Length = 509
Score = 25.5 bits (55), Expect = 1.5
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 47 VIGGAVVGLLCAILVVMFIVYRMRKKD 73
+ ++GL + ++F+ R R +
Sbjct: 481 ITRFYIIGLFLFLTFLVFLAERRRNHE 507
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma
chain {Escherichia coli [TaxId: 562]}
Length = 225
Score = 24.8 bits (54), Expect = 2.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 45 LAVIGGAVVGLLCAILVVMFIVYRMRKK 72
+A+ G G+LC I V+ + R+
Sbjct: 89 MAMFAGGASGVLCLIGGVLLLKRRLFSP 116
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase
DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
Length = 265
Score = 24.7 bits (52), Expect = 2.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 46 AVIGGAVVGLLCAIL 60
AV+GG++ GL A++
Sbjct: 8 AVVGGSISGLTAALM 22
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 288
Score = 24.3 bits (51), Expect = 3.8
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 46 AVIGGAVVGLLCAIL 60
+ G + GL CA+
Sbjct: 5 LIAGAGIGGLSCALA 19
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 23.8 bits (50), Expect = 4.2
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 46 AVIGGAVVGLLCAI 59
V+G V+GL A+
Sbjct: 10 VVLGSGVIGLSSAL 23
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 24.1 bits (51), Expect = 4.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 46 AVIGGAVVGLLCAI 59
VIG V+GL A+
Sbjct: 4 VVIGAGVIGLSTAL 17
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase
{Soil-living yeast (Trichosporon cutaneum) [TaxId:
5554]}
Length = 360
Score = 23.9 bits (50), Expect = 5.3
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 46 AVIGGAVVGLLCAIL 60
++G GL+ A +
Sbjct: 11 LIVGAGPAGLMAARV 25
>d1j5ua_ d.208.1.1 (A:) Hypothetical protein TM1083 {Thermotoga
maritima [TaxId: 2336]}
Length = 127
Score = 23.3 bits (50), Expect = 5.4
Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 8 SMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAY 40
+ +ND KG+ ++++ G+
Sbjct: 58 DAFFDTVNDWILEIS---KGWAPWRIKREGNEL 87
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
sp., strain b0618 [TaxId: 1409]}
Length = 281
Score = 23.5 bits (49), Expect = 5.7
Identities = 3/14 (21%), Positives = 6/14 (42%)
Query: 46 AVIGGAVVGLLCAI 59
V+G +G+
Sbjct: 7 IVVGAGSMGMAAGY 20
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase
{Arthrobacter globiformis [TaxId: 1665]}
Length = 305
Score = 23.6 bits (49), Expect = 6.0
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 46 AVIGGAVVGLLCA 58
+IG +VG A
Sbjct: 5 VIIGAGIVGTNLA 17
>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate
hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}
Length = 292
Score = 23.7 bits (50), Expect = 6.2
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 46 AVIGGAVVGLLCAIL 60
A+IG GLL L
Sbjct: 6 AIIGAGPSGLLLGQL 20
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO
{Bacillus sp. [TaxId: 1409]}
Length = 276
Score = 23.6 bits (49), Expect = 6.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 46 AVIGGAVVGLLCAI 59
VIGG ++G A
Sbjct: 8 VVIGGGIIGSAIAY 21
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
cereus [TaxId: 1396]}
Length = 251
Score = 23.5 bits (49), Expect = 7.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 45 LAVIGGAVVGLLCAI 59
+ VIGG GL+ AI
Sbjct: 5 VIVIGGGPSGLMAAI 19
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus
influenzae [TaxId: 727]}
Length = 189
Score = 22.8 bits (48), Expect = 9.0
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 48 IGGAVVGLLCAILVVMFIVYRMRKK 72
I G +VGL+ FI ++RK
Sbjct: 167 ISGLIVGLIWG-----FIDSKLRKN 186
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.400
Gapped
Lambda K H
0.267 0.0396 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 364,946
Number of extensions: 14557
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 27
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.8 bits)