Query psy1897
Match_columns 473
No_of_seqs 250 out of 415
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 19:01:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3705|consensus 100.0 2E-139 3E-144 1033.7 23.9 455 14-468 116-578 (580)
2 PF05830 NodZ: Nodulation prot 100.0 9.5E-29 2.1E-33 241.8 9.7 264 108-374 3-295 (321)
3 PF03254 XG_FTase: Xyloglucan 99.5 1.2E-12 2.6E-17 137.0 22.5 266 99-376 106-438 (476)
4 PF14604 SH3_9: Variant SH3 do 99.2 6.1E-12 1.3E-16 92.8 4.3 49 404-454 1-49 (49)
5 PF01531 Glyco_transf_11: Glyc 99.2 8.5E-11 1.8E-15 118.7 12.6 227 108-375 29-267 (298)
6 KOG4225|consensus 99.2 4.2E-12 9.2E-17 129.1 2.8 58 399-456 432-489 (489)
7 PF10250 O-FucT: GDP-fucose pr 99.2 1.3E-10 2.9E-15 119.2 10.2 139 229-378 170-343 (351)
8 PF00018 SH3_1: SH3 domain; I 98.9 9.2E-10 2E-14 80.6 3.5 48 403-450 1-48 (48)
9 PF07653 SH3_2: Variant SH3 do 98.8 5.5E-09 1.2E-13 78.7 3.6 53 402-456 2-55 (55)
10 smart00326 SH3 Src homology 3 98.7 2.4E-08 5.2E-13 74.3 4.4 55 401-456 4-58 (58)
11 cd00174 SH3 Src homology 3 dom 98.6 2.6E-08 5.7E-13 73.2 3.8 52 402-454 2-53 (54)
12 KOG4348|consensus 98.6 7.4E-09 1.6E-13 105.5 -0.1 59 399-459 100-158 (627)
13 KOG1702|consensus 98.4 1.5E-07 3.2E-12 87.6 3.3 58 398-455 206-263 (264)
14 KOG3775|consensus 98.3 3.7E-07 8.1E-12 91.8 2.7 61 399-459 262-322 (482)
15 KOG1118|consensus 98.3 4.7E-07 1E-11 89.2 3.1 58 398-457 305-362 (366)
16 KOG2199|consensus 98.0 2.2E-06 4.8E-11 87.1 1.6 58 398-457 214-271 (462)
17 KOG4226|consensus 97.8 9.6E-06 2.1E-10 78.8 3.0 56 402-459 110-165 (379)
18 KOG2856|consensus 97.8 3.8E-06 8.3E-11 84.5 -0.1 55 400-455 415-470 (472)
19 KOG1029|consensus 97.8 9.6E-06 2.1E-10 88.1 1.9 55 401-457 1055-1109(1118)
20 KOG4225|consensus 97.6 9.5E-05 2.1E-09 76.3 5.3 63 394-458 225-287 (489)
21 KOG3849|consensus 97.5 0.00053 1.1E-08 67.1 8.7 127 232-378 210-368 (386)
22 KOG0162|consensus 97.3 0.00011 2.4E-09 79.8 2.4 54 400-455 1052-1105(1106)
23 KOG2070|consensus 97.3 8.9E-05 1.9E-09 77.4 1.0 58 398-457 16-73 (661)
24 KOG1029|consensus 97.2 0.00011 2.4E-09 80.0 1.2 56 401-458 695-752 (1118)
25 KOG2546|consensus 97.1 0.00028 6.1E-09 72.6 2.9 57 400-458 424-480 (483)
26 KOG3523|consensus 97.1 8.5E-05 1.8E-09 79.4 -0.9 105 346-458 557-667 (695)
27 KOG4348|consensus 97.1 0.00027 5.8E-09 72.9 2.0 56 400-457 262-319 (627)
28 KOG2996|consensus 97.0 0.0004 8.7E-09 73.9 2.4 52 403-456 809-862 (865)
29 KOG3655|consensus 96.9 0.00045 9.7E-09 72.2 1.9 56 399-455 427-482 (484)
30 KOG4226|consensus 96.4 0.0015 3.2E-08 63.9 2.0 106 336-458 144-251 (379)
31 KOG3875|consensus 96.2 0.0021 4.5E-08 64.0 1.5 58 400-458 269-332 (362)
32 KOG2528|consensus 95.5 0.007 1.5E-07 63.0 2.2 57 400-457 3-60 (490)
33 KOG0199|consensus 95.4 0.009 1.9E-07 65.8 2.7 51 404-454 379-430 (1039)
34 KOG1264|consensus 95.4 0.011 2.4E-07 65.5 3.3 57 401-458 776-832 (1267)
35 KOG3632|consensus 94.5 0.021 4.6E-07 64.4 2.4 60 397-458 1136-1204(1335)
36 KOG0197|consensus 92.6 0.049 1.1E-06 58.0 1.1 66 400-465 12-84 (468)
37 KOG3601|consensus 92.5 0.086 1.9E-06 50.2 2.5 55 400-456 164-218 (222)
38 KOG4773|consensus 92.4 0.038 8.2E-07 56.1 -0.0 55 400-456 176-230 (386)
39 KOG3632|consensus 91.9 0.12 2.7E-06 58.6 3.2 61 399-460 447-514 (1335)
40 KOG3771|consensus 91.4 0.092 2E-06 55.4 1.5 54 400-454 401-459 (460)
41 KOG1843|consensus 91.3 0.098 2.1E-06 54.2 1.5 108 346-455 346-472 (473)
42 KOG3565|consensus 89.9 0.11 2.5E-06 57.7 0.7 58 401-458 580-638 (640)
43 KOG4792|consensus 89.7 0.14 3E-06 49.2 1.0 56 402-458 127-182 (293)
44 KOG0515|consensus 89.6 0.16 3.5E-06 54.2 1.4 52 403-455 687-748 (752)
45 KOG1451|consensus 89.0 0.31 6.7E-06 52.7 3.1 56 399-456 756-812 (812)
46 KOG4575|consensus 87.1 0.43 9.2E-06 52.1 2.7 54 399-453 8-62 (874)
47 KOG2996|consensus 86.5 0.67 1.5E-05 50.2 3.7 46 415-460 626-672 (865)
48 KOG4278|consensus 86.3 0.42 9E-06 52.6 2.1 65 399-465 90-155 (1157)
49 KOG4792|consensus 83.0 1.4 3E-05 42.6 3.8 71 384-456 212-284 (293)
50 KOG4429|consensus 65.6 3.1 6.8E-05 41.6 1.3 55 401-457 365-419 (421)
51 TIGR02195 heptsyl_trn_II lipop 56.8 1.2E+02 0.0026 30.6 11.2 103 246-374 165-270 (334)
52 KOG2222|consensus 53.5 4.3 9.4E-05 43.2 -0.0 111 344-467 495-615 (848)
53 PF04740 LXG: LXG domain of WX 51.6 1.2E+02 0.0025 28.5 9.5 89 14-102 95-193 (204)
54 KOG0609|consensus 49.0 10 0.00022 41.1 1.9 54 402-456 217-281 (542)
55 KOG3725|consensus 48.8 4.3 9.4E-05 39.9 -0.8 54 399-454 317-372 (375)
56 PRK10916 ADP-heptose:LPS hepto 48.6 1.7E+02 0.0037 29.8 10.9 101 252-374 179-280 (348)
57 PRK10422 lipopolysaccharide co 45.7 3E+02 0.0065 28.1 12.2 103 246-374 176-281 (352)
58 PF13864 Enkurin: Calmodulin-b 44.3 75 0.0016 26.5 6.1 56 17-72 39-95 (98)
59 smart00743 Agenet Tudor-like d 43.7 24 0.00051 26.5 2.7 25 417-441 2-26 (61)
60 PF03808 Glyco_tran_WecB: Glyc 43.5 1E+02 0.0023 28.3 7.6 75 295-378 47-126 (172)
61 COG1083 NeuA CMP-N-acetylneura 43.3 89 0.0019 30.4 7.1 78 293-377 41-119 (228)
62 COG1212 KdsB CMP-2-keto-3-deox 41.4 36 0.00079 33.3 4.1 31 294-325 41-71 (247)
63 TIGR02193 heptsyl_trn_I lipopo 41.2 1.6E+02 0.0034 29.4 9.1 94 252-374 178-273 (319)
64 cd06533 Glyco_transf_WecG_TagA 39.3 1.4E+02 0.003 27.5 7.7 74 295-377 45-123 (171)
65 TIGR02201 heptsyl_trn_III lipo 38.9 4.3E+02 0.0092 26.7 13.0 103 246-374 174-279 (344)
66 COG0859 RfaF ADP-heptose:LPS h 38.1 1.6E+02 0.0034 30.1 8.7 93 253-374 175-270 (334)
67 COG1324 CutA Uncharacterized p 37.5 24 0.00053 30.1 2.1 54 220-283 41-101 (104)
68 PF14603 hSH3: Helically-exten 35.9 61 0.0013 26.9 4.1 62 392-454 5-70 (89)
69 KOG3416|consensus 35.8 19 0.00042 31.7 1.2 30 417-446 61-90 (134)
70 PF02348 CTP_transf_3: Cytidyl 34.8 2.6E+02 0.0057 25.9 9.1 23 294-317 38-60 (217)
71 PF01075 Glyco_transf_9: Glyco 33.4 99 0.0021 29.5 6.0 25 349-374 178-202 (247)
72 KOG2264|consensus 29.9 2.1E+02 0.0046 31.7 8.0 72 23-102 80-154 (907)
73 KOG2391|consensus 29.4 1.7E+02 0.0036 30.3 6.8 57 14-71 214-273 (365)
74 KOG2776|consensus 29.2 36 0.00079 35.3 2.1 45 379-436 76-122 (398)
75 PF08239 SH3_3: Bacterial SH3 28.2 78 0.0017 22.8 3.3 37 417-454 18-55 (55)
76 COG3920 Signal transduction hi 28.1 1.5E+02 0.0033 28.6 6.2 107 19-136 26-140 (221)
77 PRK05338 rplS 50S ribosomal pr 27.7 45 0.00098 29.1 2.2 52 415-466 16-77 (116)
78 PF07568 HisKA_2: Histidine ki 27.2 3.1E+02 0.0068 21.6 8.0 57 19-78 2-58 (76)
79 PF12745 HGTP_anticodon2: Anti 26.8 24 0.00053 35.4 0.4 57 353-409 4-67 (273)
80 PF12732 YtxH: YtxH-like prote 26.7 1.8E+02 0.0039 22.8 5.3 30 14-43 22-51 (74)
81 COG4019 Uncharacterized protei 26.3 1.2E+02 0.0025 27.0 4.4 38 259-313 16-53 (156)
82 PF04375 HemX: HemX; InterPro 26.2 4.7E+02 0.01 27.3 9.9 39 62-101 111-149 (372)
83 COG4741 Predicted secreted end 26.2 2.5E+02 0.0054 25.9 6.6 20 18-37 26-45 (175)
84 PHA01750 hypothetical protein 24.7 2.1E+02 0.0046 22.4 5.0 21 20-43 29-49 (75)
85 COG4985 ABC-type phosphate tra 24.2 4.5E+02 0.0098 25.9 8.3 79 18-103 161-245 (289)
86 PRK10964 ADP-heptose:LPS hepto 23.6 3.7E+02 0.0081 26.9 8.4 25 349-374 248-272 (322)
87 PF01765 RRF: Ribosome recycli 23.3 4.6E+02 0.01 23.9 8.2 64 8-72 81-147 (165)
88 COG1922 WecG Teichoic acid bio 23.0 4.4E+02 0.0096 26.2 8.4 61 295-364 107-171 (253)
89 KOG3849|consensus 22.8 54 0.0012 32.9 1.9 38 107-145 29-66 (386)
90 PF03894 XFP: D-xylulose 5-pho 22.7 46 0.001 31.2 1.4 40 413-453 52-92 (179)
91 COG3097 Uncharacterized protei 22.4 65 0.0014 27.0 2.0 25 412-436 27-51 (106)
92 TIGR01024 rplS_bact ribosomal 21.2 61 0.0013 28.2 1.7 51 416-466 17-77 (113)
93 TIGR00501 met_pdase_II methion 21.1 77 0.0017 32.0 2.8 36 408-444 65-101 (295)
No 1
>KOG3705|consensus
Probab=100.00 E-value=1.6e-139 Score=1033.66 Aligned_cols=455 Identities=43% Similarity=0.846 Sum_probs=443.4
Q ss_pred chhHHHHHhhhhcHHHHHHHHHHHHHHHhhcCh----hhHHHHHHhHHHHHHHHHHHHHHHhcccChhhHHHHHhHHHHH
Q psy1897 14 KPYASKHRHILNNIEEFWFYVQSEVRKLKKSNA----VDVDKILDLTSQFKRSLMTDMEELGTLAGGDTLAERQNRRLGE 89 (473)
Q Consensus 14 ~~~e~l~r~~~~~~~e~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~l~~d~~~l~~~d~~~~w~~~~~~~L~~ 89 (473)
..||++||||+++|+|||++|++||.|+++... ...+.++-.+.+|++|||.|++.|.++||+++||.|+...||+
T Consensus 116 ~dhE~~rRri~~~i~E~w~fl~Sel~kvr~~~~~dl~e~~~~~LL~~~~h~rSlm~d~~~l~q~dG~e~wR~Kea~dlt~ 195 (580)
T KOG3705|consen 116 VDHEVQRRRIDDRIREMWYFLHSELGKVRKAASADLIENSTKILLETAEHMRSLMGDSAQLEQLDGSEEWRFKEATDLTQ 195 (580)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHhhHHHHHHhhHHHHHHHHhHHHHHHhccCcHHHHHhHHhHHHH
Confidence 489999999999999999999999999998653 6677888888999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCCEEEEEecCCCchhHHHHHHHHHHHHHHHcCcEEEEecCCCcccCCCcccccccCCCcCCCC
Q psy1897 90 LVQARLRHIQNPRDCKTARKVSCQINWACGFGCQLHHVTYCLIIAYATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTA 169 (473)
Q Consensus 90 ~vq~~i~~~QNP~dC~~aK~Lv~~~~~~~GfG~~lh~l~~~l~~A~~t~Rtliid~~~~~Y~~~gw~~~F~P~S~~C~~~ 169 (473)
+||+||+++|||+||++||+|||+++++||+||++||++||++.|++|.||||+.+.+|.|+.|||+..|+|+|++|.++
T Consensus 196 lvqrri~~LQNPkdCs~AkkLVCnlnKgCGyGCQLHHVvYCfi~AyaTqRtliLks~gWrY~~gGWe~VF~pvS~~c~D~ 275 (580)
T KOG3705|consen 196 LVQRRIEKLQNPKDCSEAKKLVCNLNKGCGYGCQLHHVVYCFITAYATQRTLILKSDGWRYSSGGWESVFKPVSKCCFDE 275 (580)
T ss_pred HHHHHHHHhcChHhhHHHhhheeeccCCcccccceeeeeEeeeeeeecceEEEEecCCceecCCChhhhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCC-CCCCceEEecceeccCCCCCcccCCCchhhHhhhh--cCChHHHHHHHHhhhhcccCHHHHHHHHHHH
Q psy1897 170 TEGSVIYWPDH-KPDKQIIKLASQTYSLSGPGFIPRAVPQDIAQELI--HGEPIVWWVGQIVKYIFKPNAKVRAMLSHHA 246 (473)
Q Consensus 170 ~~~~~~~W~~~-~~~~~vv~~p~~~~~~~~~~f~p~~vP~~l~~~L~--h~~p~~w~~~q~~~yl~Rp~~~~~~~I~~~~ 246 (473)
...+...|++. .++.||+.+||+|+++++|+|+|++||+|+++||. ||+|.+||.||+++||+||+|+++++|++..
T Consensus 276 ~~~nT~~wpg~~~~n~qVv~LpIvDSL~prPpyLPlAVPEdLa~rL~rlHgdP~vwwVgqFikYL~Rpqp~t~~~l~~a~ 355 (580)
T KOG3705|consen 276 AVGNTEAWPGAEPSNAQVVSLPIVDSLIPRPPYLPLAVPEDLAERLTRLHGDPPVWWVGQFIKYLMRPQPATQEKLDKAL 355 (580)
T ss_pred ccccccCCCCCCCCCceEEEeecccccCCCCCCccccCcHHHHHHHHHhcCCCceeeHHHHHHHHhCCChhhHHHHHHHH
Confidence 88888899996 44789999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHhCCCCCeeeEEEeeCCC-CCCCCCcChhhHHHHHHHHHHHHhcccCCCccEEEEeCCChHHHHHHHhhCCCcEEEcCC
Q psy1897 247 QQIGFSHPVVGVHIRRTDK-GSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEKGVIMEIRQKYPAYTILGDA 325 (473)
Q Consensus 247 ~~l~~~~piVGVHIRrgDK-~~E~~~~~~~~Ym~~v~~~~~~~~~~~~~~~~~IfLATDdp~v~~e~k~~yp~~~~~~~~ 325 (473)
+.|+|.+|||||||||||| ++||++|+++|||.+||.||+.++.++....+|||||||||.|+.|+|++||+|.|++|+
T Consensus 356 k~lg~~~PivGvhvRRTDKVGTEAAfH~~eEYM~~vE~~f~~le~rg~~~~rRiflAsDDp~vv~EAk~kYPnYe~igd~ 435 (580)
T KOG3705|consen 356 KSLGLDKPIVGVHVRRTDKVGTEAAFHALEEYMEWVEIWFKVLEKRGKPLERRIFLASDDPTVVPEAKNKYPNYEVIGDT 435 (580)
T ss_pred HhCCCCCceeeEEEEecccccchhhhhhHHHHHHHHHHHHHHHHHhCCchhheEEEecCCchhchHhhccCCCcEEeccH
Confidence 9999999999999999999 799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCChhhHHHHHHHHHHHhCCCeeeecCCChHHHHHHHHhccCCCCCCCCeeecccccccccccccchhhh
Q psy1897 326 STVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAV 405 (473)
Q Consensus 326 ~~s~~a~~~~R~s~~~l~~~l~Dl~lLs~cD~~VgT~sSn~~rla~eLr~~~~~d~~~~~~SLD~~y~~~g~~~~~~~a~ 405 (473)
+++.+|++.+|+++++++++++||++||++||+||||||+|||++||+||+.++||+.+|+||||+|||+||++|.++||
T Consensus 436 eia~~A~l~nRYTd~sL~GvIlDIh~LS~~d~LVCTFSSQVCRvaYEimQt~~pDa~~~FhSLDDIYYfGGQnAHn~ivi 515 (580)
T KOG3705|consen 436 EIAKTAQLNNRYTDASLMGVILDIHILSKVDYLVCTFSSQVCRVAYEIMQTSGPDAGSKFHSLDDIYYFGGQNAHNVIVI 515 (580)
T ss_pred HHHHHhhccccchhhhhhheeeeeeeecccceEEEechHHHHHHHHHHHhccCCCcccccccccceeeecCccccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeecccCCCCCCCCCC
Q psy1897 406 LDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVETYKFPTYPEV 468 (473)
Q Consensus 406 ~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~~~~~p~~~~~ 468 (473)
++|.|++.+||+|+|||+|+|+|||||||+||+|++|++.||||+|||+.+++++.+|+|..+
T Consensus 516 ~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvrek~~t~k~ply~~~ 578 (580)
T KOG3705|consen 516 EAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVREKFITIKIPLYVLF 578 (580)
T ss_pred EecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeeeeEEEeeecchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999764
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=99.95 E-value=9.5e-29 Score=241.76 Aligned_cols=264 Identities=20% Similarity=0.280 Sum_probs=146.2
Q ss_pred CEEEEEecCCCchhHHHHHHHHHHHHHHHcCcEEEEecCCCcccC----CCcccccccCCC------cCCCCCCC-----
Q psy1897 108 RKVSCQINWACGFGCQLHHVTYCLIIAYATNRTLVLDSTGWNYHS----GGWEEMFEPLSQ------TCRTATEG----- 172 (473)
Q Consensus 108 K~Lv~~~~~~~GfG~~lh~l~~~l~~A~~t~Rtliid~~~~~Y~~----~gw~~~F~P~S~------~C~~~~~~----- 172 (473)
++++|. ...|||..|..++.|+.+|..|||+|+|||++..|.. |.+..+|+|.-+ .|.++-+.
T Consensus 3 r~~~~r--~r~g~gd~l~~la~aw~~a~~~~r~l~idw~~s~~~~~~f~n~f~~ffepv~~i~~~~~~~~d~i~~~~~~g 80 (321)
T PF05830_consen 3 RFVVSR--RRTGLGDCLWSLAAAWRYAKRTGRTLVIDWRGSCYLDQPFTNAFPVFFEPVEDIAGVRVICDDRINQFSFPG 80 (321)
T ss_dssp -EEEEE----S-HHHHHHHHHHHHHHHHHHT-EEEEE-BT-TT-SSTTSBSHHHHB---SEETTEEEE-SGGGGT----S
T ss_pred ceEEEe--ccCCchhHHHHHHHHHHHHHHhCCeEEEEcCCceecCCcccccCCcccchhhhhcCceeEecchhhhhcCCC
Confidence 678877 7889999999999999999999999999999999963 577889999752 35554321
Q ss_pred -CcccCCCCCCCCceEEecceeccCCCCCccc-CCCchhhHhh-hhcCChHHHHHHHHhhh----hcccCHHHHHHHHHH
Q psy1897 173 -SVIYWPDHKPDKQIIKLASQTYSLSGPGFIP-RAVPQDIAQE-LIHGEPIVWWVGQIVKY----IFKPNAKVRAMLSHH 245 (473)
Q Consensus 173 -~~~~W~~~~~~~~vv~~p~~~~~~~~~~f~p-~~vP~~l~~~-L~h~~p~~w~~~q~~~y----l~Rp~~~~~~~I~~~ 245 (473)
..+.|-. .++.+.+.+|-...+-.+..+.. +...+|-... +.+.....|-..+-+.. -++|++.++++|+..
T Consensus 81 ~~fp~~w~-~p~~~~~~~pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~~~c~~~aeR~if~slkpR~eIqarID~i 159 (321)
T PF05830_consen 81 PFFPAWWN-KPSIDCVYRPDEQIFRERDELRQLFQSQEDHEANTVVCDACLMWRCDEEAEREIFSSLKPRPEIQARIDAI 159 (321)
T ss_dssp SEESGGGG-S-GGGGS---HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--TTSS-HHHHHHHHHHS-B-HHHHHHHHHH
T ss_pred CcChhHHh-CCCcceecCChHHHhhhhHHHHHHhhcccccccchhhhHhhcCCcchhHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1112221 23333443332111000000000 0000000000 11333445655544332 478999999999999
Q ss_pred HHHhCCCCCeeeEEEeeCCC---CCCCCCc-ChhhHHHHHHHHHHHHhcccCCCccEEEEeCCChHHHHHHHhhCCCcEE
Q psy1897 246 AQQIGFSHPVVGVHIRRTDK---GSEAAPH-PIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEKGVIMEIRQKYPAYTI 321 (473)
Q Consensus 246 ~~~l~~~~piVGVHIRrgDK---~~E~~~~-~~~~Ym~~v~~~~~~~~~~~~~~~~~IfLATDdp~v~~e~k~~yp~~~~ 321 (473)
.++..-++++||||||+|+. -.++.+. .-+.+|.+|...++...........+||||||+++|+++++++||+...
T Consensus 160 y~ehf~g~~~IGVHVRhGngeD~~~h~~~~~D~e~~L~~V~~ai~~ak~~~~~k~~~IFLATDSaeVid~fr~~FPdiit 239 (321)
T PF05830_consen 160 YREHFAGYSVIGVHVRHGNGEDIMDHAPYWADEERALRQVCTAIDKAKALAPPKPVRIFLATDSAEVIDQFRKKFPDIIT 239 (321)
T ss_dssp HHHHTTTSEEEEEEE---------------HHHHHHHHHHHHHHHHHHTS--SS-EEEEEEES-HHHHHHHHHHSTTEE-
T ss_pred HHHHcCCCceEEEEEeccCCcchhccCccccCchHHHHHHHHHHHHHHhccCCCCeeEEEecCcHHHHHHHHHHCCCeEE
Confidence 99977788999999999955 2344443 3345899999988876555555688999999999999999999999776
Q ss_pred EcCCcccccc-cccccC-ChhhHHHHHHHHHHHhCCCeeee-cCCChHHHHHHHHh
Q psy1897 322 LGDASTVEAA-SSDRRY-STAGLLGIITDLYFLSHSDYLVC-TFSSQICRIAYELL 374 (473)
Q Consensus 322 ~~~~~~s~~a-~~~~R~-s~~~l~~~l~Dl~lLs~cD~~Vg-T~sSn~~rla~eLr 374 (473)
+.+...+..+ .+.... +.++..++++||+|||+||++|+ |.+|.+||++..++
T Consensus 240 i~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~asl~~ 295 (321)
T PF05830_consen 240 IPKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSAFSRYASLFV 295 (321)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GGGHHHHHH-
T ss_pred cccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCchhhhHHHHhc
Confidence 5432221111 122211 23566789999999999999995 99999999999886
No 3
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=99.53 E-value=1.2e-12 Score=136.96 Aligned_cols=266 Identities=17% Similarity=0.218 Sum_probs=155.3
Q ss_pred cCCCCCCCCCEEEEEecCCCchhHHHHHHHHHHHHHHHcCcEEEEecCC-Cc------ccCCCc---ccccccCCC---c
Q psy1897 99 QNPRDCKTARKVSCQINWACGFGCQLHHVTYCLIIAYATNRTLVLDSTG-WN------YHSGGW---EEMFEPLSQ---T 165 (473)
Q Consensus 99 QNP~dC~~aK~Lv~~~~~~~GfG~~lh~l~~~l~~A~~t~Rtliid~~~-~~------Y~~~gw---~~~F~P~S~---~ 165 (473)
..+.+| |+||.. ...|+|..|..|+.+|.+|+.|||+|.||... +. |-...| .+| |+.. .
T Consensus 106 ~~~~~C---kYvVw~--~~~GLGNRmLslaSaFLYAlLT~RVLLV~~~~d~~~LFCEPFpgsSWlLP~dF--P~~~~~~~ 178 (476)
T PF03254_consen 106 DGTSEC---KYVVWI--PYSGLGNRMLSLASAFLYALLTNRVLLVDPGKDMADLFCEPFPGSSWLLPPDF--PLKNQLNG 178 (476)
T ss_pred CCCCCC---cEEEEe--cCCchHHHHHHHHHHHHHHHHhCcEEEEecCCchhhhhcCCCCCCceeCcCCC--CchhhccC
Confidence 346778 788875 57899999999999999999999999999832 11 111124 111 1111 0
Q ss_pred CCCCCCCCccc------------CCCC----------CCCCceEEecceec---------cCCCCCccc--CCCchhhHh
Q psy1897 166 CRTATEGSVIY------------WPDH----------KPDKQIIKLASQTY---------SLSGPGFIP--RAVPQDIAQ 212 (473)
Q Consensus 166 C~~~~~~~~~~------------W~~~----------~~~~~vv~~p~~~~---------~~~~~~f~p--~~vP~~l~~ 212 (473)
+.....++... +... ....+...|..... +.++.-|.| +.+|. +.+
T Consensus 179 ~~~~~~~sygnml~~~~~~~~~~~~p~~vyl~L~~~~~~~d~~FfCd~~Q~~L~~vpWLil~sd~YFvP~LFl~P~-f~~ 257 (476)
T PF03254_consen 179 FSQESAESYGNMLKNKSINNSDNSLPPYVYLHLEHDYDDHDKLFFCDEDQALLRKVPWLILRSDQYFVPSLFLVPS-FRP 257 (476)
T ss_pred CCCCchHHHHHHHhcCCccccccCCCceeEEEecccCCcCCCceecCccHHHHhcCCeEEEecCcceeehhhhchH-HHH
Confidence 10000000000 0000 00000111111100 012223444 23453 333
Q ss_pred hhhcCChHH-HHHHHHhhhhcccCHHHHHHHHHHHHHhC-CCCCeeeEEEeeCCCCCCCCCcChhhHHHHHHHHHHHH--
Q psy1897 213 ELIHGEPIV-WWVGQIVKYIFKPNAKVRAMLSHHAQQIG-FSHPVVGVHIRRTDKGSEAAPHPIHEYMRHVEEYYAQL-- 288 (473)
Q Consensus 213 ~L~h~~p~~-w~~~q~~~yl~Rp~~~~~~~I~~~~~~l~-~~~piVGVHIRrgDK~~E~~~~~~~~Ym~~v~~~~~~~-- 288 (473)
+|..--|.. -..-++.+|||+|+..+...|.++.+..- -..-.|||+||.-+...+ +.+.+++.|-.=..+-
T Consensus 258 eL~~lFP~k~tvFhhL~RYLfhPsN~VW~~Itryy~ayLa~Ad~riGIQIRvf~~~~~----~~~~~~dqIl~C~~~e~L 333 (476)
T PF03254_consen 258 ELDRLFPEKDTVFHHLGRYLFHPSNQVWGLITRYYDAYLAKADERIGIQIRVFDPKPG----PFQHVLDQILSCTQQEKL 333 (476)
T ss_pred HHHHhcCChhHHHHHHHHHHcCCCchhHHHHHHHHHHHccCcCceeEEEEEecCCCCC----cchhHHHHHHHHHhhccc
Confidence 333222322 24578999999999999999999987742 235679999999987432 4455666554422211
Q ss_pred -----hc--------ccCCCccEEEEeCCChHHHHHHHhhCCCcEEEcCCccc---ccccccccCC-hhhHHHHHHHHHH
Q psy1897 289 -----SL--------QVNVTERKVYVATDEKGVIMEIRQKYPAYTILGDASTV---EAASSDRRYS-TAGLLGIITDLYF 351 (473)
Q Consensus 289 -----~~--------~~~~~~~~IfLATDdp~v~~e~k~~yp~~~~~~~~~~s---~~a~~~~R~s-~~~l~~~l~Dl~l 351 (473)
.. ......+.|+|++..+...++++..|-+....+...++ .++....+.. ...-..+++||+|
T Consensus 334 LP~v~~~~~~~~~~~~~~~~~kaVlVtSL~~~yye~lr~~Y~~~~t~tGe~V~V~QpShe~~Q~~~~~~h~~kAlaEmyL 413 (476)
T PF03254_consen 334 LPEVVDTQEPAASSSSKSQKSKAVLVTSLYSEYYEKLRNMYWEHPTVTGEVVGVHQPSHEEYQQFGDNMHNQKALAEMYL 413 (476)
T ss_pred CCCccccccccccccCCCCceEEEEEEeCCHHHHHHHHHHHhcCCCcCCcEEEEECCCCcccccccccchHHHHHHHHHH
Confidence 00 01246788999999999999999998665433222111 1111111211 1112579999999
Q ss_pred HhCCCeeeecCCChHHHHHHHHhcc
Q psy1897 352 LSHSDYLVCTFSSQICRIAYELLNT 376 (473)
Q Consensus 352 Ls~cD~~VgT~sSn~~rla~eLr~~ 376 (473)
||-||.+|.|..|+||.+|..|-+-
T Consensus 414 LS~sD~LVTS~~STFGYVAqgLgGl 438 (476)
T PF03254_consen 414 LSLSDVLVTSGWSTFGYVAQGLGGL 438 (476)
T ss_pred HHhccceEecCCCCchhHHHhhcCC
Confidence 9999999999999999999998543
No 4
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.25 E-value=6.1e-12 Score=92.79 Aligned_cols=49 Identities=33% Similarity=0.502 Sum_probs=45.1
Q ss_pred hhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCccee
Q psy1897 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVI 454 (473)
Q Consensus 404 a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~ 454 (473)
|+|+|.|+.++||+|++||+|.|.....+||+.|+| +|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRN--TGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEE--TTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEE--CCEEEEECHHhCC
Confidence 789999999999999999999999999999999997 9999999999996
No 5
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=99.22 E-value=8.5e-11 Score=118.72 Aligned_cols=227 Identities=19% Similarity=0.228 Sum_probs=121.9
Q ss_pred CEEEEEecCCCchhHHHHHHHHHHHHHHHcCcEEEEecCCCcccCCCcccccccCCCcCCCCCCCCcccCCCCCCCCceE
Q psy1897 108 RKVSCQINWACGFGCQLHHVTYCLIIAYATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTATEGSVIYWPDHKPDKQII 187 (473)
Q Consensus 108 K~Lv~~~~~~~GfG~~lh~l~~~l~~A~~t~Rtliid~~~~~Y~~~gw~~~F~P~S~~C~~~~~~~~~~W~~~~~~~~vv 187 (473)
+.+.+.+....|||.++..++..+.+|...+++.++......+..+ +...+.-+.. .. .....|.. ..+-
T Consensus 29 ~~~~~~i~~~g~LGNqmfqya~l~~lak~~~~~~~i~~~~~~~l~~-~~~~~~~~~~---~~--~~~~~~~~----~~~~ 98 (298)
T PF01531_consen 29 KYLMSTINLNGRLGNQMFQYASLYGLAKLNGRTAFIPISMHRYLHP-FRITLPILNE---SF--PIRIPWIN----YFLK 98 (298)
T ss_pred ccceEEEEEcchHHHHHhHHHHHHHHHHhcCCccccchHHHHHhhh-hhhcccccch---hh--hhhhhhhh----hhHH
Confidence 5677777778999999999999999999888887766533322211 2221111110 00 00001110 0000
Q ss_pred EecceeccCCCCCc-ccCCCchhhHhhhhcCChHHHHHHHHhhhhcccCHHHHHHHHHHHHHhC-----CCCCeeeEEEe
Q psy1897 188 KLASQTYSLSGPGF-IPRAVPQDIAQELIHGEPIVWWVGQIVKYIFKPNAKVRAMLSHHAQQIG-----FSHPVVGVHIR 261 (473)
Q Consensus 188 ~~p~~~~~~~~~~f-~p~~vP~~l~~~L~h~~p~~w~~~q~~~yl~Rp~~~~~~~I~~~~~~l~-----~~~piVGVHIR 261 (473)
.+-..........+ ....+|... ....+| + -|..+|.+...+.+++.+....+++. -....||||||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~G----y--~q~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~VHIR 171 (298)
T PF01531_consen 99 CFMKKNYFILKNEYFRFLGYPNSK-NYYLHG----Y--FQSIKYFFDIKDELREEFKEFLRELNLEIIIKNSNSVCVHIR 171 (298)
T ss_pred HHhhccccccccccchhhcccCcC-CeEEEe----e--ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 00000000000000 000011000 000011 1 13445666666666666665444332 23578999999
Q ss_pred eCCCCCCC---CC--cChhhHHHHHHHHHHHHhcccCCCccEEEEeCCChHHHHHH-HhhCCCcEEEcCCcccccccccc
Q psy1897 262 RTDKGSEA---AP--HPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEKGVIMEI-RQKYPAYTILGDASTVEAASSDR 335 (473)
Q Consensus 262 rgDK~~E~---~~--~~~~~Ym~~v~~~~~~~~~~~~~~~~~IfLATDdp~v~~e~-k~~yp~~~~~~~~~~s~~a~~~~ 335 (473)
|||-.... .. ..-.+|...+-+++.+. .....+||.|||++-.++. ....+...+..+
T Consensus 172 RGDy~~~~~~~~~~~~~~~~Yy~~Ai~~i~~~-----~~~~~f~ifSDD~~w~k~~l~~~~~~~~~~~~----------- 235 (298)
T PF01531_consen 172 RGDYVSNGNHNWKHGICDKDYYKKAIEYIREK-----VKNPKFFIFSDDIEWCKENLKFSNGDVYFSGN----------- 235 (298)
T ss_pred chhccccccccccCCCCCHHHHHHHHHHHHHh-----CCCCEEEEEcCCHHHHHHHHhhcCCcEEEECC-----------
Confidence 99985321 12 22346666555555442 3467899999999877653 322222222221
Q ss_pred cCChhhHHHHHHHHHHHhCCCeeeecCCChHHHHHHHHhc
Q psy1897 336 RYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELLN 375 (473)
Q Consensus 336 R~s~~~l~~~l~Dl~lLs~cD~~VgT~sSn~~rla~eLr~ 375 (473)
.....||++||.||++|.| .|++|-.++-|-+
T Consensus 236 -------~~~~~Dl~lms~C~~~Iis-nSTFswW~a~L~~ 267 (298)
T PF01531_consen 236 -------NSPYEDLYLMSQCKHFIIS-NSTFSWWAAYLSK 267 (298)
T ss_pred -------CCHHHHHHHHHhCCcEEEC-CChHHHHHHHHCC
Confidence 2468899999999999999 8999999999954
No 6
>KOG4225|consensus
Probab=99.22 E-value=4.2e-12 Score=129.14 Aligned_cols=58 Identities=31% Similarity=0.383 Sum_probs=54.9
Q ss_pred ccchhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeec
Q psy1897 399 DNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISR 456 (473)
Q Consensus 399 ~~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~ 456 (473)
...++|+|+|.|++++||+|+.||+|.|.+.+.|||+.||.+|||++|.||.+||++.
T Consensus 432 ~l~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~~ 489 (489)
T KOG4225|consen 432 PLKYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKRL 489 (489)
T ss_pred cccceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCccccccC
Confidence 3448999999999999999999999999999999999999999999999999999863
No 7
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=99.15 E-value=1.3e-10 Score=119.24 Aligned_cols=139 Identities=15% Similarity=0.148 Sum_probs=75.2
Q ss_pred hhhcccCHHHHHHHHHHHHHhC-CCCCeeeEEEeeC-CCC--CC---------------------------CCCcChhhH
Q psy1897 229 KYIFKPNAKVRAMLSHHAQQIG-FSHPVVGVHIRRT-DKG--SE---------------------------AAPHPIHEY 277 (473)
Q Consensus 229 ~yl~Rp~~~~~~~I~~~~~~l~-~~~piVGVHIRrg-DK~--~E---------------------------~~~~~~~~Y 277 (473)
+..+++++.+++..++.++++. -+.|.||||+|+| |-. .+ ..+...++.
T Consensus 170 ~r~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 249 (351)
T PF10250_consen 170 QRYLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDWFSACEFKGERHLLASPRCWGKKSINPEKKRRNGCCPSTPQE 249 (351)
T ss_dssp GGG--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHHHHHHCT-T----TTTHHHH-GGGTT-----HHHHS--HHHH
T ss_pred eEEEecCHHHHHHHHHHHHHhhcccCceEEEeecccCchHhhcccCCchHHHHHhHhhccccccchhhhhcCCCCChHHH
Confidence 5589999999999999999987 5789999999999 760 00 001111122
Q ss_pred HHHHHHHHHHHhcccCCCccEEEEeCCCh----HHHHHHHhhCCCcEEEcCCcccccccccccCChhhHHHHHHHHHHHh
Q psy1897 278 MRHVEEYYAQLSLQVNVTERKVYVATDEK----GVIMEIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLS 353 (473)
Q Consensus 278 m~~v~~~~~~~~~~~~~~~~~IfLATDdp----~v~~e~k~~yp~~~~~~~~~~s~~a~~~~R~s~~~l~~~l~Dl~lLs 353 (473)
+..+.+... ....+.||||||+. ..++.+++.+|+.. ....... .....+... -..+++|.++++
T Consensus 250 ~~~i~~~~~------~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~--~~~~~~~-~~~~~~~~~--~~~a~vD~~i~~ 318 (351)
T PF10250_consen 250 AKQILRALG------KNNTTVVYIATDEIYGGERRLDPLKNMFPNVV--TKDDLLS-HEELEPLND--DQLAMVDQEICS 318 (351)
T ss_dssp HHHHHHHHH------HHT-SEEEEEESS-----------HHHHHHHH--GGGT--E-E--S-------S--HHHHHHHHH
T ss_pred HHHHHHHhc------cCCCCEEEEecCcccccchhHHHHHHHhhhhE--eccccCC-HHHhhhccc--cchhHHHHHHHh
Confidence 222222221 24568999999993 24455665555432 1000000 001111111 235899999999
Q ss_pred CCCeeeecCCChHHHHHHHHhccCC
Q psy1897 354 HSDYLVCTFSSQICRIAYELLNTDH 378 (473)
Q Consensus 354 ~cD~~VgT~sSn~~rla~eLr~~~~ 378 (473)
+||+||||..|+|+..+...|...+
T Consensus 319 ~s~~Figt~~Stfs~~i~~~R~~~g 343 (351)
T PF10250_consen 319 RSDVFIGTCGSTFSSNIARERHYRG 343 (351)
T ss_dssp HSSEEEE-TT-HHHHHHHHHHHHSS
T ss_pred cCCEEEecCcchhHHHhhcccCcCC
Confidence 9999999999999999999998876
No 8
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=98.91 E-value=9.2e-10 Score=80.64 Aligned_cols=48 Identities=25% Similarity=0.404 Sum_probs=45.3
Q ss_pred hhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeC
Q psy1897 403 LAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450 (473)
Q Consensus 403 ~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~ 450 (473)
+|+|+|.++.++||+|+.||+|.|.....+||+.|.+.+|++.|++|+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 589999999999999999999999999999999999999999999996
No 9
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=98.77 E-value=5.5e-09 Score=78.74 Aligned_cols=53 Identities=26% Similarity=0.423 Sum_probs=47.0
Q ss_pred hhhhccCCCCCCCccccCCCCeEeec-cccccceeeeEecCCCeeeeeeCcceeec
Q psy1897 402 QLAVLDHTPQTADQIELRVGDEVKPA-GNHWDGFSRGTNLRTNRHGLYPSFKVISR 456 (473)
Q Consensus 402 ~~a~~~~~~~~~~el~l~~GD~i~~~-~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~ 456 (473)
++|+.+|.++.++||+|+.||+|.|. ...++||+.|.+ +|+.|+||+.+|+++
T Consensus 2 ~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~--~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 2 YRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGEN--NGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEE--TTEEEEEEGGGEEEH
T ss_pred EEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEE--CCcEEEEcHHHEEEC
Confidence 57899999999999999999999999 777889999999 799999999999863
No 10
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.67 E-value=2.4e-08 Score=74.33 Aligned_cols=55 Identities=29% Similarity=0.383 Sum_probs=50.6
Q ss_pred chhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeec
Q psy1897 401 IQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISR 456 (473)
Q Consensus 401 ~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~ 456 (473)
..+|+++|.+..++||+|++||+|.+.....+||+.|++.+ ++.|++|+.+|+.+
T Consensus 4 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~-~~~G~vP~~~v~~~ 58 (58)
T smart00326 4 QVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGR-GKEGLFPSNYVEEI 58 (58)
T ss_pred EEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCC-CCEEEEchHHEEEC
Confidence 45799999999999999999999999988899999999988 99999999998753
No 11
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.64 E-value=2.6e-08 Score=73.21 Aligned_cols=52 Identities=27% Similarity=0.409 Sum_probs=48.6
Q ss_pred hhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCccee
Q psy1897 402 QLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVI 454 (473)
Q Consensus 402 ~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~ 454 (473)
.+|+++|.+..++||.|++||+|.+....++||+.|++.++ +.|++|+.+|+
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~-~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGG-KRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCC-CEEEEccccCc
Confidence 46899999999999999999999999998999999999987 99999999876
No 12
>KOG4348|consensus
Probab=98.60 E-value=7.4e-09 Score=105.47 Aligned_cols=59 Identities=25% Similarity=0.409 Sum_probs=54.0
Q ss_pred ccchhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeecccC
Q psy1897 399 DNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVET 459 (473)
Q Consensus 399 ~~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~~ 459 (473)
+..+.|.|.|.|++.|||+|++||+|++.+.--+|||+|+.. |+.||||+++|+.+..+
T Consensus 100 ~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Ln--gk~GmFPsNFVkel~~~ 158 (627)
T KOG4348|consen 100 ARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLN--GKVGMFPSNFVKELPTP 158 (627)
T ss_pred ceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceec--CcccccchhhceecCCC
Confidence 567789999999999999999999999999999999999765 99999999999988654
No 13
>KOG1702|consensus
Probab=98.42 E-value=1.5e-07 Score=87.60 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=54.5
Q ss_pred cccchhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceee
Q psy1897 398 RDNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVIS 455 (473)
Q Consensus 398 ~~~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~ 455 (473)
....++|+|+|.+++++|++++-||-|.......|||..|+..|||.+||.|++|++-
T Consensus 206 ~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~ 263 (264)
T KOG1702|consen 206 TGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF 263 (264)
T ss_pred CCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence 3478999999999999999999999998889999999999999999999999999975
No 14
>KOG3775|consensus
Probab=98.28 E-value=3.7e-07 Score=91.81 Aligned_cols=61 Identities=30% Similarity=0.476 Sum_probs=56.1
Q ss_pred ccchhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeecccC
Q psy1897 399 DNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVET 459 (473)
Q Consensus 399 ~~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~~ 459 (473)
-.-++|+....|+-+|||+|++||-|.|...-.|=|+.|+|+|||+.|+||++++-++.-.
T Consensus 262 e~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~ 322 (482)
T KOG3775|consen 262 EQTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGP 322 (482)
T ss_pred chhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCc
Confidence 4678899999999999999999999999998899999999999999999999999887543
No 15
>KOG1118|consensus
Probab=98.27 E-value=4.7e-07 Score=89.15 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=50.6
Q ss_pred cccchhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeecc
Q psy1897 398 RDNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRV 457 (473)
Q Consensus 398 ~~~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~ 457 (473)
.....+|+|+..|++++||+|+.||+|.+......+||.|.. -|++||||.+||+.+.
T Consensus 305 ~~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~--~g~sG~FPvnYv~vlv 362 (366)
T KOG1118|consen 305 DQPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEK--HGESGMFPVNYVEVLV 362 (366)
T ss_pred cchhheeeeccCCCCCCccCcccCceeeehhhcCcchhhhee--cCccCccccceeEEec
Confidence 346678999999999999999999999999888888888765 3779999999999873
No 16
>KOG2199|consensus
Probab=97.99 E-value=2.2e-06 Score=87.12 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=50.3
Q ss_pred cccchhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeecc
Q psy1897 398 RDNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRV 457 (473)
Q Consensus 398 ~~~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~ 457 (473)
.....+|+|+..+...+||+++.||+|.|...-.-.||+|.|.| ..||||+++|...+
T Consensus 214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~--~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHR--GIGLFPSNFVTADL 271 (462)
T ss_pred cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCC--cccccchhhhhhhh
Confidence 35678899999999999999999999999976666677777654 58999999999887
No 17
>KOG4226|consensus
Probab=97.84 E-value=9.6e-06 Score=78.80 Aligned_cols=56 Identities=23% Similarity=0.417 Sum_probs=51.0
Q ss_pred hhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeecccC
Q psy1897 402 QLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVET 459 (473)
Q Consensus 402 ~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~~ 459 (473)
..|-+.|.|+.+|||+|-.|+.|.|.+...||||+|.. .|+.|.||++||.+..+.
T Consensus 110 AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~--ng~VGWFPSNYv~E~~ds 165 (379)
T KOG4226|consen 110 AVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSY--NGQVGWFPSNYVTEEVDS 165 (379)
T ss_pred eEEEEeeccccccccccccCcEEEEEEeccCcceeccc--CCeeccccccceehhccc
Confidence 45668999999999999999999999999999999976 699999999999987764
No 18
>KOG2856|consensus
Probab=97.82 E-value=3.8e-06 Score=84.50 Aligned_cols=55 Identities=27% Similarity=0.405 Sum_probs=48.5
Q ss_pred cchhhhccCCCCCCCccccCCCCeEeeccccc-cceeeeEecCCCeeeeeeCcceee
Q psy1897 400 NIQLAVLDHTPQTADQIELRVGDEVKPAGNHW-DGFSRGTNLRTNRHGLYPSFKVIS 455 (473)
Q Consensus 400 ~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~-~G~~~g~n~rt~~~Gl~P~~~v~~ 455 (473)
...+|+|+|.++..|||.++.||+|.+.+... -||.+|+-. .|+.||||++||+-
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~-~G~vGLyPAnYVe~ 470 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLD-SGRVGLYPANYVEC 470 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCcccccccccccc-CCcccccchhhhhc
Confidence 67789999999999999999999999997665 599999654 49999999999974
No 19
>KOG1029|consensus
Probab=97.77 E-value=9.6e-06 Score=88.09 Aligned_cols=55 Identities=24% Similarity=0.394 Sum_probs=46.7
Q ss_pred chhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeecc
Q psy1897 401 IQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRV 457 (473)
Q Consensus 401 ~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~ 457 (473)
..+|+|+|+++++|||.++.||+|.|.+.-.--||+|. |.|++||||++||...+
T Consensus 1055 qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge--~ng~sGLFPSNYV~k~t 1109 (1118)
T KOG1029|consen 1055 QVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGE--RNGKSGLFPSNYVQKQT 1109 (1118)
T ss_pred eeEEeeccccCCcccccccCCCEEEecCCCChhhhccc--ccCccccCccccccccc
Confidence 45689999999999999999999999987777777773 34999999999995544
No 20
>KOG4225|consensus
Probab=97.55 E-value=9.5e-05 Score=76.30 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=53.8
Q ss_pred cccccccchhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeeccc
Q psy1897 394 FAGQRDNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVE 458 (473)
Q Consensus 394 ~~g~~~~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~ 458 (473)
..-.....++|+|++.|++..||.|++||+|.+......-|+-|. +-|+.|+||++||+.+..
T Consensus 225 ~~~~~~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGE--hhGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 225 KTEKPKRAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGE--HHGRVGIFPASYVEILTP 287 (489)
T ss_pred CCccccchhhheeccccCCccccccCCCCEEEEEeeccCceeeee--ecceecceechheeecCc
Confidence 334445668999999999999999999999999988888888874 458999999999998865
No 21
>KOG3849|consensus
Probab=97.45 E-value=0.00053 Score=67.08 Aligned_cols=127 Identities=19% Similarity=0.317 Sum_probs=78.8
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCeeeEEEeeCCCC---CC-----------CC------------------CcChhhHHH
Q psy1897 232 FKPNAKVRAMLSHHAQQIGFSHPVVGVHIRRTDKG---SE-----------AA------------------PHPIHEYMR 279 (473)
Q Consensus 232 ~Rp~~~~~~~I~~~~~~l~~~~piVGVHIRrgDK~---~E-----------~~------------------~~~~~~Ym~ 279 (473)
+|-...+.+.-++++++ .+.+|.||||.|-|--. .| |+ .-+.++-+.
T Consensus 210 l~WS~r~~e~~k~fI~a-~L~rpfvgiHLRng~DWvraCehikd~~~~hlfASpQClGy~~~~gaLt~e~C~Psk~~I~r 288 (386)
T KOG3849|consen 210 LRWSSRITEQAKKFISA-NLARPFVGIHLRNGADWVRACEHIKDTTNRHLFASPQCLGYGHHLGALTKEICSPSKQQILR 288 (386)
T ss_pred HHHHHHHHHHHHHHHHH-hcCcceeEEEeecCchHHHHHHHhcccCCCccccChhhccccccccccchhhhCccHHHHHH
Confidence 44444455555555544 46789999999987431 01 00 111222233
Q ss_pred HHHHHHHHHhcccCCCccEEEEeCCChHHHHHHHhhCCCcEEEcCCcccccccccccCChhhHHHHHHHHHHHhCCCeee
Q psy1897 280 HVEEYYAQLSLQVNVTERKVYVATDEKGVIMEIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLV 359 (473)
Q Consensus 280 ~v~~~~~~~~~~~~~~~~~IfLATDdp~v~~e~k~~yp~~~~~~~~~~s~~a~~~~R~s~~~l~~~l~Dl~lLs~cD~~V 359 (473)
.+..++..+ ...+.||||||+...++|+....-.+.+- ..|-.. ..+.+|+++|..+|.||
T Consensus 289 qik~~v~si-----~dakSVfVAsDs~hmi~Eln~aL~~~~i~-----------vh~l~p---dd~y~dLaIlGqadhFi 349 (386)
T KOG3849|consen 289 QIKEKVGSI-----GDAKSVFVASDSDHMIDELNEALKPYEIE-----------VHRLEP---DDMYTDLAILGQADHFI 349 (386)
T ss_pred HHHHHHhhh-----cccceEEEeccchhhhHHHHHhhccccee-----------EEecCc---ccchhhhhhhcccchhh
Confidence 333333322 35789999999999999998543323320 011111 13678999999999999
Q ss_pred ecCCChHHHHHHHHhccCC
Q psy1897 360 CTFSSQICRIAYELLNTDH 378 (473)
Q Consensus 360 gT~sSn~~rla~eLr~~~~ 378 (473)
|.--|+++-.+-.=|...+
T Consensus 350 GNCvSsfsafvKRERD~~G 368 (386)
T KOG3849|consen 350 GNCVSSFSAFVKRERDHAG 368 (386)
T ss_pred hhhHHHHHHHHhhhhcccC
Confidence 9999999988887775544
No 22
>KOG0162|consensus
Probab=97.31 E-value=0.00011 Score=79.82 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=49.5
Q ss_pred cchhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceee
Q psy1897 400 NIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVIS 455 (473)
Q Consensus 400 ~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~ 455 (473)
..+.|+|+|..++.+||++++||+|++...--.|||.|. -.|+.|+||++||++
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk--~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGK--LNGKEGLFPGNYVTE 1105 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhc--cCCcccccccccccc
Confidence 567899999999999999999999999988889999997 349999999999986
No 23
>KOG2070|consensus
Probab=97.26 E-value=8.9e-05 Score=77.37 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=48.9
Q ss_pred cccchhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeecc
Q psy1897 398 RDNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRV 457 (473)
Q Consensus 398 ~~~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~ 457 (473)
++.+.+|=|+..-.++|||.+..||+|.|.....-|||.||. -|++|.||++||..+-
T Consensus 16 ~pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTl--ng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 16 NPLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTL--NGRTGWFPSNYVREIK 73 (661)
T ss_pred CceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccc--cCccCccchHHHHHHh
Confidence 456667778888888999999999999999887788888865 3889999999998764
No 24
>KOG1029|consensus
Probab=97.21 E-value=0.00011 Score=80.04 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=47.9
Q ss_pred chhhhccCCCCCCCccccCCCCeEeeccccc--cceeeeEecCCCeeeeeeCcceeeccc
Q psy1897 401 IQLAVLDHTPQTADQIELRVGDEVKPAGNHW--DGFSRGTNLRTNRHGLYPSFKVISRVE 458 (473)
Q Consensus 401 ~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~--~G~~~g~n~rt~~~Gl~P~~~v~~~~~ 458 (473)
.|+|+|+..+++++||++.|||+|.|...+. -||..|.- | |++|.||.+||+.+..
T Consensus 695 kyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel-~-gktGWFPenyvEki~~ 752 (1118)
T KOG1029|consen 695 KYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGEL-R-GKTGWFPENYVEKIPA 752 (1118)
T ss_pred EEeeecccccCCcccccccCCCEEEEehhccCCccccccee-c-cccCcCcHHHHhhccc
Confidence 5689999999999999999999999997665 48877743 3 8999999999987654
No 25
>KOG2546|consensus
Probab=97.12 E-value=0.00028 Score=72.64 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=50.8
Q ss_pred cchhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeeccc
Q psy1897 400 NIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVE 458 (473)
Q Consensus 400 ~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~ 458 (473)
...+|||+|.+...+||.++.|-+|.|+.+..|||+.|.-- |-+||||.+||+++..
T Consensus 424 EkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~--~VTglFpgnyve~~~~ 480 (483)
T KOG2546|consen 424 EKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQD--GVTGLFPGNYVEPLKA 480 (483)
T ss_pred HHHHhhcccccccccccccccccEEEEEEecCCcchhheec--CcceeccCcccccccc
Confidence 45569999999999999999999999999999999998764 4599999999998754
No 26
>KOG3523|consensus
Probab=97.12 E-value=8.5e-05 Score=79.39 Aligned_cols=105 Identities=22% Similarity=0.231 Sum_probs=77.5
Q ss_pred HHHHHHHhCCC-----eeeec-CCChHHHHHHHHhccCCCCCCCCeeecccccccccccccchhhhccCCCCCCCccccC
Q psy1897 346 ITDLYFLSHSD-----YLVCT-FSSQICRIAYELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAVLDHTPQTADQIELR 419 (473)
Q Consensus 346 l~Dl~lLs~cD-----~~VgT-~sSn~~rla~eLr~~~~~d~~~~~~SLD~~y~~~g~~~~~~~a~~~~~~~~~~el~l~ 419 (473)
++=+.||+.|+ ++..+ .-|---|++..|+-... -...|..| .+.......++-+|.|..+||+.|+
T Consensus 557 lF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~p~~~------~~~~~~i~--e~~dcpQv~~~~sy~a~q~Del~Le 628 (695)
T KOG3523|consen 557 LFLLTLLSNHQGRQTELLLSAESQSDRQRWISALRPPSS------TKPPEKIY--EEWDCPQVQCVHSYKAKQPDELTLE 628 (695)
T ss_pred eEEEehhhccCCCceeeeecCCchHHHHHHHHhcCCCCC------CCChhhhh--hccCCChhheeeccccCCCceeeee
Confidence 34456777765 34444 22556677777752111 11223333 3444566778999999999999999
Q ss_pred CCCeEeeccccccceeeeEecCCCeeeeeeCcceeeccc
Q psy1897 420 VGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVE 458 (473)
Q Consensus 420 ~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~ 458 (473)
.||++.|.....|||+.|.-.|-|..|.||+.+|+.++.
T Consensus 629 ~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~ 667 (695)
T KOG3523|consen 629 LADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITN 667 (695)
T ss_pred hhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcC
Confidence 999999999999999999999999999999999998765
No 27
>KOG4348|consensus
Probab=97.05 E-value=0.00027 Score=72.87 Aligned_cols=56 Identities=23% Similarity=0.286 Sum_probs=46.8
Q ss_pred cchhhhccCCCCCCCccccCCCCeEeec-ccccc-ceeeeEecCCCeeeeeeCcceeecc
Q psy1897 400 NIQLAVLDHTPQTADQIELRVGDEVKPA-GNHWD-GFSRGTNLRTNRHGLYPSFKVISRV 457 (473)
Q Consensus 400 ~~~~a~~~~~~~~~~el~l~~GD~i~~~-~~~~~-G~~~g~n~rt~~~Gl~P~~~v~~~~ 457 (473)
...++++.|.|++.|||.|+.||+|... .++-| |||.|.. .|+.|+||-++|+-+.
T Consensus 262 eycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGEL--nGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 262 EYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGEL--NGKKGVFPDNFVELVQ 319 (627)
T ss_pred hheeeeeeecCCCccceeeccccEEEEecccccccceeeeee--cCccccCCchhhhhcC
Confidence 3457999999999999999999998877 45554 9999954 3899999999998664
No 28
>KOG2996|consensus
Probab=96.96 E-value=0.0004 Score=73.89 Aligned_cols=52 Identities=27% Similarity=0.382 Sum_probs=42.6
Q ss_pred hhhccCCCCCCCccccCCCCeEeeccc--cccceeeeEecCCCeeeeeeCcceeec
Q psy1897 403 LAVLDHTPQTADQIELRVGDEVKPAGN--HWDGFSRGTNLRTNRHGLYPSFKVISR 456 (473)
Q Consensus 403 ~a~~~~~~~~~~el~l~~GD~i~~~~~--~~~G~~~g~n~rt~~~Gl~P~~~v~~~ 456 (473)
+|=|+..+++..||+|+.||+|.+... ...|||+|.- -|+.|.||+.||++-
T Consensus 809 varYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGev--ngrvGwFPstYVee~ 862 (865)
T KOG2996|consen 809 VARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEV--NGRVGWFPSTYVEED 862 (865)
T ss_pred eeccccCCCchhhcccccCCEEEEehhccccCceeccee--cCccccccccccccc
Confidence 355788888889999999999988854 4479999943 378999999999874
No 29
>KOG3655|consensus
Probab=96.88 E-value=0.00045 Score=72.23 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=50.6
Q ss_pred ccchhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceee
Q psy1897 399 DNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVIS 455 (473)
Q Consensus 399 ~~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~ 455 (473)
....+|+|+|.+.+..||.+.++|+|.++.....|||.|.-.+ |..||||++||+-
T Consensus 427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pd-G~~glfPaNyV~l 482 (484)
T KOG3655|consen 427 PQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPD-GEVGLFPANYVEL 482 (484)
T ss_pred CCCccccccccccCCcccccCCccccccccccCCccccccCCC-CCcCccccccccc
Confidence 3456799999999999999999999999998889999998876 8999999999874
No 30
>KOG4226|consensus
Probab=96.44 E-value=0.0015 Score=63.87 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=73.9
Q ss_pred cCChhhHHHHHHHHHHHhCCCeeeecCCChHHHHHHHHhccCCCCCCCCeeecccccccccccccchhhhccCCCCCCCc
Q psy1897 336 RYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAVLDHTPQTADQ 415 (473)
Q Consensus 336 R~s~~~l~~~l~Dl~lLs~cD~~VgT~sSn~~rla~eLr~~~~~d~~~~~~SLD~~y~~~g~~~~~~~a~~~~~~~~~~e 415 (473)
|.+.++-++.+-.-++.-+||--.|..-|-.++=.+.+ ..+. -+++--|+.+|+|+....+..|
T Consensus 144 rG~~ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~~~A~-----------a~n~-----~~s~vl~vVvaLYsFsssndeE 207 (379)
T KOG4226|consen 144 RGSYNGQVGWFPSNYVTEEVDSAAGDSPSFLSLRKAAS-----------ASNG-----QGSRVLHVVVALYSFSSSNDEE 207 (379)
T ss_pred ecccCCeeccccccceehhccccccCCccceecchhhc-----------ccCC-----CCceEEEEEEEEecccCCChhh
Confidence 33444545666666666677765555444333311111 0111 1255568888999999999999
Q ss_pred cccCCCCeEeeccc--cccceeeeEecCCCeeeeeeCcceeeccc
Q psy1897 416 IELRVGDEVKPAGN--HWDGFSRGTNLRTNRHGLYPSFKVISRVE 458 (473)
Q Consensus 416 l~l~~GD~i~~~~~--~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~ 458 (473)
|.++.||.++|... +.-.||+-+|-| |++||.|.+||..+.+
T Consensus 208 LsFeKGerleivd~Pe~DPdWwkarn~~-G~vGLVPrNYv~vl~d 251 (379)
T KOG4226|consen 208 LSFEKGERLEIVDKPENDPDWWKARNAR-GQVGLVPRNYVVVLSD 251 (379)
T ss_pred cccccCceeEeccCCCCCchHHhhcccC-CccceeecceEEEecc
Confidence 99999999999844 455799999988 9999999999998765
No 31
>KOG3875|consensus
Probab=96.18 E-value=0.0021 Score=63.99 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=46.4
Q ss_pred cchhhhccCCCCCCCccccCCCCeEeecc------ccccceeeeEecCCCeeeeeeCcceeeccc
Q psy1897 400 NIQLAVLDHTPQTADQIELRVGDEVKPAG------NHWDGFSRGTNLRTNRHGLYPSFKVISRVE 458 (473)
Q Consensus 400 ~~~~a~~~~~~~~~~el~l~~GD~i~~~~------~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~ 458 (473)
...+|+|+.-++++-||+|+.||++.|+. ...+||. +..+-.+.+|++|.+||+-+=.
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~-lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWL-LATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCccee-eeeccCCeeeeeehhhhhhhhc
Confidence 35679999999999999999999999983 3345663 3333568999999999987655
No 32
>KOG2528|consensus
Probab=95.54 E-value=0.007 Score=63.00 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=51.6
Q ss_pred cchhhhccCCCCCCCccccCCCCeEeec-cccccceeeeEecCCCeeeeeeCcceeecc
Q psy1897 400 NIQLAVLDHTPQTADQIELRVGDEVKPA-GNHWDGFSRGTNLRTNRHGLYPSFKVISRV 457 (473)
Q Consensus 400 ~~~~a~~~~~~~~~~el~l~~GD~i~~~-~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~ 457 (473)
...+|+|+....+..|+.+..||++.++ +.+-.||.-|.|.| |..||||+.+|+...
T Consensus 3 sk~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsr-ge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 3 SKARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSR-GERGLFPASYVEVTR 60 (490)
T ss_pred cchhhhcchhhcccccccccccceeeecCcccccccccCCCcc-CccCCCcccceeeec
Confidence 3568999999889999999999999888 67889999999998 999999999999775
No 33
>KOG0199|consensus
Probab=95.45 E-value=0.009 Score=65.80 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=43.7
Q ss_pred hhccCCCCCCCccccCCCCeEeeccccccce-eeeEecCCCeeeeeeCccee
Q psy1897 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGF-SRGTNLRTNRHGLYPSFKVI 454 (473)
Q Consensus 404 a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~-~~g~n~rt~~~Gl~P~~~v~ 454 (473)
|.-.|.....+-|.|+.||.|.|.++--.|| |+|-|.||++.|.||.+-|.
T Consensus 379 a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 379 ARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred eeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 3344455566899999999999998888786 99999999999999999998
No 34
>KOG1264|consensus
Probab=95.42 E-value=0.011 Score=65.45 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=47.0
Q ss_pred chhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeeccc
Q psy1897 401 IQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVE 458 (473)
Q Consensus 401 ~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~ 458 (473)
...|+|+|+++.+|||++-.|-+|.+.....-|||+|.- -+...|.||+++|+++..
T Consensus 776 t~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdY-Gg~iq~wfPsnyVeei~~ 832 (1267)
T KOG1264|consen 776 TVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDY-GGRIQQWFPSNYVEEIST 832 (1267)
T ss_pred hhhhhhccccCCcccccccccceeEeeeccCCceeeccc-ccceeeeccHHHhhhhcc
Confidence 446999999999999999999999999766666766633 235789999999998865
No 35
>KOG3632|consensus
Probab=94.49 E-value=0.021 Score=64.40 Aligned_cols=60 Identities=28% Similarity=0.431 Sum_probs=49.9
Q ss_pred ccccchhhhccCCCCC--------CCccccCCCCeEeeccccc-cceeeeEecCCCeeeeeeCcceeeccc
Q psy1897 397 QRDNIQLAVLDHTPQT--------ADQIELRVGDEVKPAGNHW-DGFSRGTNLRTNRHGLYPSFKVISRVE 458 (473)
Q Consensus 397 ~~~~~~~a~~~~~~~~--------~~el~l~~GD~i~~~~~~~-~G~~~g~n~rt~~~Gl~P~~~v~~~~~ 458 (473)
+.+..++|+++|.|.. +.||.++.||||.|.|... ||||.|.- .|+.|+.|.+.|.++..
T Consensus 1136 lparifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~--ngr~GlIPcNmvae~~v 1204 (1335)
T KOG3632|consen 1136 LPARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGEL--NGRRGLIPCNMVAEQPV 1204 (1335)
T ss_pred CcceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccc--ccccccccccccccccC
Confidence 4467889999999963 6799999999999999876 89998843 26689999999987743
No 36
>KOG0197|consensus
Probab=92.56 E-value=0.049 Score=58.04 Aligned_cols=66 Identities=23% Similarity=0.320 Sum_probs=53.2
Q ss_pred cchhhhccCCCCCCCccccCCCCeEeecccccc-ceeeeEecCCCeeeeeeCcceeec------ccCCCCCCC
Q psy1897 400 NIQLAVLDHTPQTADQIELRVGDEVKPAGNHWD-GFSRGTNLRTNRHGLYPSFKVISR------VETYKFPTY 465 (473)
Q Consensus 400 ~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~-G~~~g~n~rt~~~Gl~P~~~v~~~------~~~~~~p~~ 465 (473)
...+|+|++.++++++|.++.||.+....+..+ .|++-+++-++..|+.|+++|... .....+|-|
T Consensus 12 ~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~~~~~~~~l~~~~Wf 84 (468)
T KOG0197|consen 12 TIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARNRGSPAFIKLSDEPWF 84 (468)
T ss_pred ceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeeccccCCCccccccCCch
Confidence 467899999999999999999999655555554 588888887999999999999987 444555554
No 37
>KOG3601|consensus
Probab=92.46 E-value=0.086 Score=50.19 Aligned_cols=55 Identities=24% Similarity=0.358 Sum_probs=45.7
Q ss_pred cchhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeec
Q psy1897 400 NIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISR 456 (473)
Q Consensus 400 ~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~ 456 (473)
.-+.|+|+-.|..++|+..+.||.|+|.....--|+.|.. .|+.|+||+.+|.+.
T Consensus 164 ~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~--lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 164 YYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSK--LGRAGIFPAGYVAPS 218 (222)
T ss_pred hhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccc--cCceeeecCcccccc
Confidence 3567899989999999999999999999776666666643 488999999999765
No 38
>KOG4773|consensus
Probab=92.40 E-value=0.038 Score=56.09 Aligned_cols=55 Identities=20% Similarity=0.143 Sum_probs=49.7
Q ss_pred cchhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeec
Q psy1897 400 NIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISR 456 (473)
Q Consensus 400 ~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~ 456 (473)
..+.|+.+++.+...||.|..||++.+...-.-||+-|+- | |.+|.||.++++.+
T Consensus 176 q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~-R-~~~g~yp~sF~~~l 230 (386)
T KOG4773|consen 176 QRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKV-R-GLTGYYPDSFVKQL 230 (386)
T ss_pred HHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeee-c-cccccccHHhhhhh
Confidence 6788999999999999999999999999888889988865 3 89999999999988
No 39
>KOG3632|consensus
Probab=91.93 E-value=0.12 Score=58.59 Aligned_cols=61 Identities=28% Similarity=0.292 Sum_probs=53.3
Q ss_pred ccchhhhccCCC------CCCCccccCCCCeEeeccccc-cceeeeEecCCCeeeeeeCcceeecccCC
Q psy1897 399 DNIQLAVLDHTP------QTADQIELRVGDEVKPAGNHW-DGFSRGTNLRTNRHGLYPSFKVISRVETY 460 (473)
Q Consensus 399 ~~~~~a~~~~~~------~~~~el~l~~GD~i~~~~~~~-~G~~~g~n~rt~~~Gl~P~~~v~~~~~~~ 460 (473)
.+...|.|+|+| +.+.|+.|-.|+.|.+.|++. ||++.|.. |-|+-||-|+++|+.+.+..
T Consensus 447 ~q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL-~dgrrglvPsnFVe~v~d~~ 514 (1335)
T KOG3632|consen 447 AQPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGEL-RDGRRGLVPSNFVEVVTDTK 514 (1335)
T ss_pred cceEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeee-ecccccCCCchheEEeccch
Confidence 678889999999 347899999999999999987 79999865 66999999999999887653
No 40
>KOG3771|consensus
Probab=91.40 E-value=0.092 Score=55.41 Aligned_cols=54 Identities=20% Similarity=0.256 Sum_probs=43.2
Q ss_pred cchhhhccCCCCCCCccccCCCCeEeec-----cccccceeeeEecCCCeeeeeeCccee
Q psy1897 400 NIQLAVLDHTPQTADQIELRVGDEVKPA-----GNHWDGFSRGTNLRTNRHGLYPSFKVI 454 (473)
Q Consensus 400 ~~~~a~~~~~~~~~~el~l~~GD~i~~~-----~~~~~G~~~g~n~rt~~~Gl~P~~~v~ 454 (473)
....++|+|.+.+.+||+++.||.|.|. ..+|.||..|.-.-.+ .|++|.++.+
T Consensus 401 ~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~-~~~~~~~~~~ 459 (460)
T KOG3771|consen 401 YKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDW-NGLFPLNFTR 459 (460)
T ss_pred cceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccc-ccceeccccC
Confidence 3456999999999999999999999998 3567899887655543 6788877643
No 41
>KOG1843|consensus
Probab=91.28 E-value=0.098 Score=54.20 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=68.1
Q ss_pred HHHHHHHhCCCeeeecCCChHHHHH-HHHhccCCCCC---CCCeeeccccccccccc-------------ccchhhhccC
Q psy1897 346 ITDLYFLSHSDYLVCTFSSQICRIA-YELLNTDHRDA---SLNFKSLDDIWFFAGQR-------------DNIQLAVLDH 408 (473)
Q Consensus 346 l~Dl~lLs~cD~~VgT~sSn~~rla-~eLr~~~~~d~---~~~~~SLD~~y~~~g~~-------------~~~~~a~~~~ 408 (473)
+.|..+..+----|-|+-|+-+|.. ..+....++.. ...+.+++..|.-.|.. +....|+|+.
T Consensus 346 y~dfiivlrd~ea~~tf~s~~h~~~Ga~~s~a~~~s~r~~esdi~a~S~~~~~~~~~s~skgaf~~~Sl~~n~a~a~ysf 425 (473)
T KOG1843|consen 346 YSDFIIVLRDYEAIQTFRSGTHRVRGAGLSAAVGPSGRAVESDIRAGSSGYSKCGTYSASKGAFVGCSLEPNIATALYSF 425 (473)
T ss_pred cccchhhcchhhhhhccccccccccccccccccCcCccchhhcccccCCcccccccccCCCCcccccccCcceeeeeehh
Confidence 3443333333334556677776665 22232222111 12455667666655543 3467799999
Q ss_pred CCCCCCccccCCCCeEeeccc--cccceeeeEecCCCeeeeeeCcceee
Q psy1897 409 TPQTADQIELRVGDEVKPAGN--HWDGFSRGTNLRTNRHGLYPSFKVIS 455 (473)
Q Consensus 409 ~~~~~~el~l~~GD~i~~~~~--~~~G~~~g~n~rt~~~Gl~P~~~v~~ 455 (473)
..+-.+.+.|+.||+|.+... -.+-||.| ++-++.||||+++|+.
T Consensus 426 age~~GDl~f~kgDii~il~ks~s~~dwwtg--r~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 426 AGEQPGDLSFQKGDIITILKKSDSANDWWTG--RGNGYEGIFPANYVSL 472 (473)
T ss_pred ccCCCCCcccccCceEEEecCCcchhhHHHh--hccccccccccceecc
Confidence 999999999999999998843 33556655 3447899999999975
No 42
>KOG3565|consensus
Probab=89.91 E-value=0.11 Score=57.68 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=51.1
Q ss_pred chhhhccCCCCCCCccccCCCCeEeec-cccccceeeeEecCCCeeeeeeCcceeeccc
Q psy1897 401 IQLAVLDHTPQTADQIELRVGDEVKPA-GNHWDGFSRGTNLRTNRHGLYPSFKVISRVE 458 (473)
Q Consensus 401 ~~~a~~~~~~~~~~el~l~~GD~i~~~-~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~ 458 (473)
.-.|+|++.+.+++++.+.+|+++.+. ..+.+||.+|.-.+-+..|.+|+.|++....
T Consensus 580 ~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~~ 638 (640)
T KOG3565|consen 580 TSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTET 638 (640)
T ss_pred ceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccccc
Confidence 345899999999999999999999998 6788999999877789999999999987643
No 43
>KOG4792|consensus
Probab=89.73 E-value=0.14 Score=49.23 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=48.2
Q ss_pred hhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeeccc
Q psy1897 402 QLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVE 458 (473)
Q Consensus 402 ~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~ 458 (473)
.+|+++.+-+++++|.++.|+++.+..+-.+-||..+|.- |+.||.|..||+....
T Consensus 127 vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~-Gk~GmIPvpYVe~~~~ 182 (293)
T KOG4792|consen 127 VRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSE-GKRGMIPVPYVEKYRP 182 (293)
T ss_pred eeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccC-CcccceechHHHhhhh
Confidence 3468899999999999999999999988888888887765 9999999999976543
No 44
>KOG0515|consensus
Probab=89.55 E-value=0.16 Score=54.23 Aligned_cols=52 Identities=31% Similarity=0.422 Sum_probs=38.4
Q ss_pred hhhccCCCCCCCccccCCCCeEeeccc-------cc---cceeeeEecCCCeeeeeeCcceee
Q psy1897 403 LAVLDHTPQTADQIELRVGDEVKPAGN-------HW---DGFSRGTNLRTNRHGLYPSFKVIS 455 (473)
Q Consensus 403 ~a~~~~~~~~~~el~l~~GD~i~~~~~-------~~---~G~~~g~n~rt~~~Gl~P~~~v~~ 455 (473)
-|+++|.++.+|||+++.||-+.|... || .+==.|+..| +-.||||.-|-+.
T Consensus 687 YAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPR-nylgLyPriKprq 748 (752)
T KOG0515|consen 687 YALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPR-NYLGLYPRIKPRQ 748 (752)
T ss_pred EEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccch-hhhhcCccccchh
Confidence 388999999999999999999999833 33 1112444555 6789999877544
No 45
>KOG1451|consensus
Probab=89.02 E-value=0.31 Score=52.72 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=47.5
Q ss_pred ccchhhhccCCCCCCCccccCCCCeEe-eccccccceeeeEecCCCeeeeeeCcceeec
Q psy1897 399 DNIQLAVLDHTPQTADQIELRVGDEVK-PAGNHWDGFSRGTNLRTNRHGLYPSFKVISR 456 (473)
Q Consensus 399 ~~~~~a~~~~~~~~~~el~l~~GD~i~-~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~ 456 (473)
+....++|.++|...-|+...+|-++. |.+..-+||..|+. .|++||.|++||+++
T Consensus 756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtL--nGktglip~nyve~l 812 (812)
T KOG1451|consen 756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTL--NGKTGLIPSNYVEPL 812 (812)
T ss_pred cccccceeccCCCCcccccccCcceeeeecccCCCCceeeec--CCCcccCcccccCcC
Confidence 456668999999999999999999985 44678899999976 499999999999863
No 46
>KOG4575|consensus
Probab=87.12 E-value=0.43 Score=52.07 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=42.9
Q ss_pred ccchhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecC-CCeeeeeeCcce
Q psy1897 399 DNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLR-TNRHGLYPSFKV 453 (473)
Q Consensus 399 ~~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~r-t~~~Gl~P~~~v 453 (473)
+-.++|.|.-+-+.++++.+-.||+|++.. .-+|||.|.-.| ++..|+||+++|
T Consensus 8 p~~vrA~y~w~ge~eGdl~f~egDlie~tr-I~dgkwwi~lhrNk~~~g~fpsNFv 62 (874)
T KOG4575|consen 8 PCMVRALYAWPGEREGDLKFTEGDLIEQTR-IEDGKWWILLHRNKDEDGLFPSNFV 62 (874)
T ss_pred CceEEeeccCCCCcccccceecccceeEEe-eccceeeeeeeecccccccCcccce
Confidence 345678888888889999999999998763 457765555555 999999999999
No 47
>KOG2996|consensus
Probab=86.50 E-value=0.67 Score=50.20 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=37.2
Q ss_pred ccccCCCCeEeecc-ccccceeeeEecCCCeeeeeeCcceeecccCC
Q psy1897 415 QIELRVGDEVKPAG-NHWDGFSRGTNLRTNRHGLYPSFKVISRVETY 460 (473)
Q Consensus 415 el~l~~GD~i~~~~-~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~~~ 460 (473)
-+.|++||++.... .--.-||-|.|.-|++.|.||++-|++-.-..
T Consensus 626 ~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vp 672 (865)
T KOG2996|consen 626 RLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVP 672 (865)
T ss_pred ceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCC
Confidence 57899999998773 33445889999999999999999999765433
No 48
>KOG4278|consensus
Probab=86.29 E-value=0.42 Score=52.59 Aligned_cols=65 Identities=17% Similarity=0.334 Sum_probs=51.9
Q ss_pred ccchhhhccCCCCCCCccccCCCCeEeeccccccc-eeeeEecCCCeeeeeeCcceeecccCCCCCCC
Q psy1897 399 DNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDG-FSRGTNLRTNRHGLYPSFKVISRVETYKFPTY 465 (473)
Q Consensus 399 ~~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G-~~~g~n~rt~~~Gl~P~~~v~~~~~~~~~p~~ 465 (473)
+..++|+|+..+..++-|+|..||.+-|.|...|| |..... ..|+ |..|++|..++--.-++--|
T Consensus 90 pNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEart-KNGq-GWVPSNyItPvNSLeKhsWY 155 (1157)
T KOG4278|consen 90 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEART-KNGQ-GWVPSNYITPVNSLEKHSWY 155 (1157)
T ss_pred CceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecc-cCCC-ccccccccccccchhhcccc
Confidence 35889999999999999999999999999866665 865443 3366 99999999988766555544
No 49
>KOG4792|consensus
Probab=83.02 E-value=1.4 Score=42.62 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=49.2
Q ss_pred CeeecccccccccccccchhhhccCCCC--CCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeec
Q psy1897 384 NFKSLDDIWFFAGQRDNIQLAVLDHTPQ--TADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISR 456 (473)
Q Consensus 384 ~~~SLD~~y~~~g~~~~~~~a~~~~~~~--~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~ 456 (473)
.+.|-|...--..-.+...+|+.+--|+ +..-|.|++||+|.|.....||-|.|.. .|+.|.||--.|+-.
T Consensus 212 a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegEl--nGk~G~fPfThvrf~ 284 (293)
T KOG4792|consen 212 ASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGEL--NGKIGHFPFTHVRFT 284 (293)
T ss_pred CCcccCCcCccccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeee--cCccccccceeEEee
Confidence 3445555443333334445566655555 2347899999999999999999888854 389999998888754
No 50
>KOG4429|consensus
Probab=65.61 E-value=3.1 Score=41.60 Aligned_cols=55 Identities=9% Similarity=0.047 Sum_probs=46.0
Q ss_pred chhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeecc
Q psy1897 401 IQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRV 457 (473)
Q Consensus 401 ~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~ 457 (473)
...|.|+..++..+|+.+..||++.+.+.-..||+.|.. .|..|-||+-+|+..+
T Consensus 365 lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl--~gd~~hf~Aa~iEea~ 419 (421)
T KOG4429|consen 365 LCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRL--LGDFEHFHAAEIEEAL 419 (421)
T ss_pred HhhhhhccccccccccCCcccceeeecCcccCCCceeee--ccccCCCcHHHHHHhc
Confidence 345778889999999999999999999999999987754 3889999998887653
No 51
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=56.80 E-value=1.2e+02 Score=30.55 Aligned_cols=103 Identities=14% Similarity=0.170 Sum_probs=56.7
Q ss_pred HHHhCC--CCCeeeEEEeeCCCCCCCCCcChhhHHHHHHHHHHHHhcccCCCccEEEEeC-CChHHHHHHHhhCCCcEEE
Q psy1897 246 AQQIGF--SHPVVGVHIRRTDKGSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVAT-DEKGVIMEIRQKYPAYTIL 322 (473)
Q Consensus 246 ~~~l~~--~~piVGVHIRrgDK~~E~~~~~~~~Ym~~v~~~~~~~~~~~~~~~~~IfLAT-Ddp~v~~e~k~~yp~~~~~ 322 (473)
..+++. ..|+|+||. .+.. ...+.-|.+.|.+.++...+ ...+-|.+.+ +|.+..+++....++-.+
T Consensus 165 ~~~~~~~~~~~~i~i~p-ga~~-~~~K~Wp~e~~~~li~~l~~-------~~~~ivl~G~~~e~~~~~~i~~~~~~~~~- 234 (334)
T TIGR02195 165 LAKFGLDTERPIIAFCP-GAEF-GPAKRWPHEHYAELAKRLID-------QGYQVVLFGSAKDHPAGNEIEALLPGELR- 234 (334)
T ss_pred HHHcCCCCCCCEEEEcC-CCCC-CccCCCCHHHHHHHHHHHHH-------CCCEEEEEEChhhHHHHHHHHHhCCcccc-
Confidence 444444 469999998 2211 13455666666655554331 1234455555 344445555544432211
Q ss_pred cCCcccccccccccCChhhHHHHHHHHHHHhCCCeeeecCCChHHHHHHHHh
Q psy1897 323 GDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELL 374 (473)
Q Consensus 323 ~~~~~s~~a~~~~R~s~~~l~~~l~Dl~lLs~cD~~VgT~sSn~~rla~eLr 374 (473)
+ +... .++ --=..++++||.+||. .|..-.||..+-
T Consensus 235 -~--------l~g~---~sL---~el~ali~~a~l~I~~-DSGp~HlAaA~~ 270 (334)
T TIGR02195 235 -N--------LAGE---TSL---DEAVDLIALAKAVVTN-DSGLMHVAAALN 270 (334)
T ss_pred -c--------CCCC---CCH---HHHHHHHHhCCEEEee-CCHHHHHHHHcC
Confidence 0 1111 122 1223478899999999 999999999884
No 52
>KOG2222|consensus
Probab=53.46 E-value=4.3 Score=43.21 Aligned_cols=111 Identities=21% Similarity=0.248 Sum_probs=70.8
Q ss_pred HHHHHHH--HHhCCCeeeecCCChHHHHHHHH-hccCCCCCCCCeeeccccccccccc--ccchhhhccCCCCCCCcccc
Q psy1897 344 GIITDLY--FLSHSDYLVCTFSSQICRIAYEL-LNTDHRDASLNFKSLDDIWFFAGQR--DNIQLAVLDHTPQTADQIEL 418 (473)
Q Consensus 344 ~~l~Dl~--lLs~cD~~VgT~sSn~~rla~eL-r~~~~~d~~~~~~SLD~~y~~~g~~--~~~~~a~~~~~~~~~~el~l 418 (473)
++++|+- +|.-|.+||.-- -.|+..+ -|+.+ +--.+.=|..-+..|.. +....|+.+....+++|+.+
T Consensus 495 eilvdlkeailki~r~fis~d----~kl~~~i~~qady---s~esh~kd~~nfik~~r~~~krakal~df~r~dddelgf 567 (848)
T KOG2222|consen 495 EILVDLKEAILKICRHFISCD----EKLAGHICLQADY---SPESHAKDHANFIKGARTGAKRAKALHDFAREDDDELGF 567 (848)
T ss_pred hHhHHHHHHHHHHhHHHeecc----hhhccceeeeccC---CchhhhhhHHHHhhhhhhhhHHHHHHhhhhhcccccccc
Confidence 5889985 777788887531 1111111 12222 22233445544444442 46677999999999999999
Q ss_pred CCCCeEeeccc----cccceeeeEecCCCeeeeeeCcceeecccC-CCCCCCCC
Q psy1897 419 RVGDEVKPAGN----HWDGFSRGTNLRTNRHGLYPSFKVISRVET-YKFPTYPE 467 (473)
Q Consensus 419 ~~GD~i~~~~~----~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~~-~~~p~~~~ 467 (473)
+..|+|.+... +|-|=.. |.-|.||+-+|+-+-+. -.|..|+.
T Consensus 568 rkndiitiisekdehcwvgeln------glrgwfpakfvellder~k~yt~~gd 615 (848)
T KOG2222|consen 568 RKNDIITIISEKDEHCWVGELN------GLRGWFPAKFVELLDERGKLYTIAGD 615 (848)
T ss_pred ccccEEEEeecCCcceeeeccc------cccccchHHHHHHHHhccceeeeccc
Confidence 99999998843 4444443 77899999999877654 34444544
No 53
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=51.60 E-value=1.2e+02 Score=28.46 Aligned_cols=89 Identities=10% Similarity=0.084 Sum_probs=63.8
Q ss_pred chhHHHHHhhhhcHHHHHHHHHHHHHHHhhcCh----------hhHHHHHHhHHHHHHHHHHHHHHHhcccChhhHHHHH
Q psy1897 14 KPYASKHRHILNNIEEFWFYVQSEVRKLKKSNA----------VDVDKILDLTSQFKRSLMTDMEELGTLAGGDTLAERQ 83 (473)
Q Consensus 14 ~~~e~l~r~~~~~~~e~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~l~~d~~~l~~~d~~~~w~~~~ 83 (473)
++-+.|...+.+.+......+......++.... .....+...+...++.|..-+++|..+|....---.+
T Consensus 95 i~e~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lekL~~fd~~~~~~~~~ 174 (204)
T PF04740_consen 95 IDEDFLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEKLRAFDQQSSSIFSE 174 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 556778777888888887777666666544322 2356677777777888899999999999644433357
Q ss_pred hHHHHHHHHHHHhhhcCCC
Q psy1897 84 NRRLGELVQARLRHIQNPR 102 (473)
Q Consensus 84 ~~~L~~~vq~~i~~~QNP~ 102 (473)
+..+-..++.-|..+++-.
T Consensus 175 ~~~~~~~l~~~l~~l~~~~ 193 (204)
T PF04740_consen 175 IEELLQALQSGLSQLQSMW 193 (204)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 7788888888888887644
No 54
>KOG0609|consensus
Probab=49.00 E-value=10 Score=41.10 Aligned_cols=54 Identities=24% Similarity=0.376 Sum_probs=37.5
Q ss_pred hhhhccCCCCC-------CCccccCCCCeEeecc----ccccceeeeEecCCCeeeeeeCcceeec
Q psy1897 402 QLAVLDHTPQT-------ADQIELRVGDEVKPAG----NHWDGFSRGTNLRTNRHGLYPSFKVISR 456 (473)
Q Consensus 402 ~~a~~~~~~~~-------~~el~l~~GD~i~~~~----~~~~G~~~g~n~rt~~~Gl~P~~~v~~~ 456 (473)
-+|..+|.|.. +.-|.++.||++++.. |||-++--|-- --+..||+||.-..+.
T Consensus 217 vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~-~~~~AGLiPS~~~qer 281 (542)
T KOG0609|consen 217 VRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDP-FGGLAGLIPSKELQER 281 (542)
T ss_pred ehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCc-cccccccccCHHHHHH
Confidence 34777777764 5688999999999994 66666544411 2266899999865443
No 55
>KOG3725|consensus
Probab=48.84 E-value=4.3 Score=39.92 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=44.8
Q ss_pred ccchhhhccCCCCCCCccccCCCCeEeec--cccccceeeeEecCCCeeeeeeCccee
Q psy1897 399 DNIQLAVLDHTPQTADQIELRVGDEVKPA--GNHWDGFSRGTNLRTNRHGLYPSFKVI 454 (473)
Q Consensus 399 ~~~~~a~~~~~~~~~~el~l~~GD~i~~~--~~~~~G~~~g~n~rt~~~Gl~P~~~v~ 454 (473)
....+|+|+|.+-.+.||+|-..|+|.|. +.+.-.|..| .|.|+.|-.|..|.+
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmg--ErGnkkGKvPvtYlE 372 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMG--ERGNKKGKVPVTYLE 372 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhh--hhcCCCCCcchhHHH
Confidence 35678999999999999999999999988 5777788766 477888988876653
No 56
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=48.63 E-value=1.7e+02 Score=29.79 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=54.2
Q ss_pred CCCeeeEEEeeCCCCCCCCCcChhhHHHHHHHHHHHHhcccCCCccEEEEeCC-ChHHHHHHHhhCCCcEEEcCCccccc
Q psy1897 252 SHPVVGVHIRRTDKGSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATD-EKGVIMEIRQKYPAYTILGDASTVEA 330 (473)
Q Consensus 252 ~~piVGVHIRrgDK~~E~~~~~~~~Ym~~v~~~~~~~~~~~~~~~~~IfLATD-dp~v~~e~k~~yp~~~~~~~~~~s~~ 330 (473)
+.|+|+||. .+ .....+.-|.+.|.+.++... . ...+-|++.+. |.+..+++.+..+.-.. ...
T Consensus 179 ~~~~i~i~p-ga-~~~~~K~Wp~e~~a~l~~~l~-~------~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~------~~~ 243 (348)
T PRK10916 179 ERPIIGFCP-GA-EFGPAKRWPHYHYAELAQQLI-D------EGYQVVLFGSAKDHEAGNEILAALNTEQQ------AWC 243 (348)
T ss_pred CCCEEEEeC-CC-CCccccCCCHHHHHHHHHHHH-H------CCCeEEEEeCHHhHHHHHHHHHhcccccc------cce
Confidence 579999999 33 212345667777766665543 1 12334444443 22334444433321100 000
Q ss_pred ccccccCChhhHHHHHHHHHHHhCCCeeeecCCChHHHHHHHHh
Q psy1897 331 ASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELL 374 (473)
Q Consensus 331 a~~~~R~s~~~l~~~l~Dl~lLs~cD~~VgT~sSn~~rla~eLr 374 (473)
..+..+ .++ --=+.++++||.+||. .|+.-.||..+-
T Consensus 244 ~~l~g~---~sL---~el~ali~~a~l~I~n-DTGp~HlAaA~g 280 (348)
T PRK10916 244 RNLAGE---TQL---EQAVILIAACKAIVTN-DSGLMHVAAALN 280 (348)
T ss_pred eeccCC---CCH---HHHHHHHHhCCEEEec-CChHHHHHHHhC
Confidence 001111 122 2223688999999999 899999999984
No 57
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=45.72 E-value=3e+02 Score=28.06 Aligned_cols=103 Identities=11% Similarity=0.080 Sum_probs=55.0
Q ss_pred HHHhCCCCCeeeEEEeeCCCCCCCCCcChhhHHHHHHHHHHHHhcccCCCccEEEEeC-C--ChHHHHHHHhhCCCcEEE
Q psy1897 246 AQQIGFSHPVVGVHIRRTDKGSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVAT-D--EKGVIMEIRQKYPAYTIL 322 (473)
Q Consensus 246 ~~~l~~~~piVGVHIRrgDK~~E~~~~~~~~Ym~~v~~~~~~~~~~~~~~~~~IfLAT-D--dp~v~~e~k~~yp~~~~~ 322 (473)
....+.+.|+|+||.=-+ ...+.-|.+.|.+.++... . ...+-|++.+ + |.+..+++.+..+...++
T Consensus 176 ~~~~~~~~~~i~i~pga~---~~~K~Wp~e~fa~l~~~L~-~------~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~ 245 (352)
T PRK10422 176 LDHLGVTQNYVVIQPTAR---QIFKCWDNDKFSAVIDALQ-A------RGYEVVLTSGPDKDDLACVNEIAQGCQTPPVT 245 (352)
T ss_pred HHhcCCCCCeEEEecCCC---ccccCCCHHHHHHHHHHHH-H------CCCeEEEEcCCChHHHHHHHHHHHhcCCCccc
Confidence 334445679999997432 1345567766666655432 1 1233444433 2 223334444322111110
Q ss_pred cCCcccccccccccCChhhHHHHHHHHHHHhCCCeeeecCCChHHHHHHHHh
Q psy1897 323 GDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELL 374 (473)
Q Consensus 323 ~~~~~s~~a~~~~R~s~~~l~~~l~Dl~lLs~cD~~VgT~sSn~~rla~eLr 374 (473)
. +.-+ .++ --=+.+++.||.+||. .|+.-.||..+-
T Consensus 246 ------~---l~g~---~sL---~el~ali~~a~l~v~n-DSGp~HlAaA~g 281 (352)
T PRK10422 246 ------A---LAGK---TTF---PELGALIDHAQLFIGV-DSAPAHIAAAVN 281 (352)
T ss_pred ------c---ccCC---CCH---HHHHHHHHhCCEEEec-CCHHHHHHHHcC
Confidence 0 0001 122 1224588999999999 999999999883
No 58
>PF13864 Enkurin: Calmodulin-binding
Probab=44.29 E-value=75 Score=26.54 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=42.9
Q ss_pred HHHHHhhhhcHHHHHHHHHHHHHHHhhcCh-hhHHHHHHhHHHHHHHHHHHHHHHhc
Q psy1897 17 ASKHRHILNNIEEFWFYVQSEVRKLKKSNA-VDVDKILDLTSQFKRSLMTDMEELGT 72 (473)
Q Consensus 17 e~l~r~~~~~~~e~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~d~~~l~~ 72 (473)
|.=|..+.+.++.-|.-++.|+.+|-...+ .....-+..++.....|+.||..|.+
T Consensus 39 eeER~~lL~~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 39 EEERQELLEGLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 444667889999999999999999887755 45555566777777888888888764
No 59
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=43.68 E-value=24 Score=26.50 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=20.0
Q ss_pred ccCCCCeEeeccccccceeeeEecC
Q psy1897 417 ELRVGDEVKPAGNHWDGFSRGTNLR 441 (473)
Q Consensus 417 ~l~~GD~i~~~~~~~~G~~~g~n~r 441 (473)
.+++||+|++.-...++|+.|+-.+
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~ 26 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTK 26 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEE
Confidence 5789999999976678899886543
No 60
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=43.45 E-value=1e+02 Score=28.30 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=50.4
Q ss_pred CccEEEEeCCChHHHHH----HHhhCCCcEEEcCCcccccccccccCChhhHHHHHHHHHHHhCCCeeeecCCChH-HHH
Q psy1897 295 TERKVYVATDEKGVIME----IRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQI-CRI 369 (473)
Q Consensus 295 ~~~~IfLATDdp~v~~e----~k~~yp~~~~~~~~~~s~~a~~~~R~s~~~l~~~l~Dl~lLs~cD~~VgT~sSn~-~rl 369 (473)
...+|||...++++.++ +++.||+..+++...... + ..-...+++..-.+..|.++..+.+-- =++
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f--------~-~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~ 117 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF--------D-EEEEEAIINRINASGPDIVFVGLGAPKQERW 117 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC--------C-hhhHHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 45689999999999885 567899999876322111 1 111345666666789999988877765 356
Q ss_pred HHHHhccCC
Q psy1897 370 AYELLNTDH 378 (473)
Q Consensus 370 a~eLr~~~~ 378 (473)
+++.++.+.
T Consensus 118 ~~~~~~~l~ 126 (172)
T PF03808_consen 118 IARHRQRLP 126 (172)
T ss_pred HHHHHHHCC
Confidence 666666554
No 61
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=43.34 E-value=89 Score=30.37 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=48.2
Q ss_pred CCCccEEEEeCCChHHHHHHHhhCCCcEEEcCCcccccccccccCChhhHHHHHHHHHHHhC-CCeeeecCCChHHHHHH
Q psy1897 293 NVTERKVYVATDEKGVIMEIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSH-SDYLVCTFSSQICRIAY 371 (473)
Q Consensus 293 ~~~~~~IfLATDdp~v~~e~k~~yp~~~~~~~~~~s~~a~~~~R~s~~~l~~~l~Dl~lLs~-cD~~VgT~sSn~~rla~ 371 (473)
.+...+|+|+||++++++++++ |+--.++.-+ +.++...+ .++..++--+..+-. .|.++|...++.=|-..
T Consensus 41 s~~fd~VviSsDs~~Il~~A~~-ygak~~~~Rp-----~~LA~D~a-st~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~ 113 (228)
T COG1083 41 SKLFDKVVISSDSEEILEEAKK-YGAKVFLKRP-----KELASDRA-STIDAALHALESFNIDEDTLILLQPTSPLLTSL 113 (228)
T ss_pred CCccceEEEcCCcHHHHHHHHH-hCccccccCC-----hhhccCch-hHHHHHHHHHHHhccccCeeEEeccCccccchh
Confidence 4678899999999999999994 6544433222 21222111 222334444444443 46688888888877777
Q ss_pred HHhccC
Q psy1897 372 ELLNTD 377 (473)
Q Consensus 372 eLr~~~ 377 (473)
.++++.
T Consensus 114 ~ik~A~ 119 (228)
T COG1083 114 HIKEAF 119 (228)
T ss_pred HHHHHH
Confidence 777663
No 62
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=41.45 E-value=36 Score=33.29 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=24.9
Q ss_pred CCccEEEEeCCChHHHHHHHhhCCCcEEEcCC
Q psy1897 294 VTERKVYVATDEKGVIMEIRQKYPAYTILGDA 325 (473)
Q Consensus 294 ~~~~~IfLATDdp~v~~e~k~~yp~~~~~~~~ 325 (473)
....+|+|||||++|.+..+ .|+...+.++.
T Consensus 41 s~~~rvvVATDde~I~~av~-~~G~~avmT~~ 71 (247)
T COG1212 41 SGADRVVVATDDERIAEAVQ-AFGGEAVMTSK 71 (247)
T ss_pred cCCCeEEEEcCCHHHHHHHH-HhCCEEEecCC
Confidence 36789999999999999888 57777766654
No 63
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=41.22 E-value=1.6e+02 Score=29.45 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=54.1
Q ss_pred CCCeeeEEEeeCCCCCCCCCcChhhHHHHHHHHHHHHhcccCCCccEEEE-eCC-ChHHHHHHHhhCCCcEEEcCCcccc
Q psy1897 252 SHPVVGVHIRRTDKGSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYV-ATD-EKGVIMEIRQKYPAYTILGDASTVE 329 (473)
Q Consensus 252 ~~piVGVHIRrgDK~~E~~~~~~~~Ym~~v~~~~~~~~~~~~~~~~~IfL-ATD-dp~v~~e~k~~yp~~~~~~~~~~s~ 329 (473)
+.|+|++|.-.+. ..+--|.+.|.+.++...+ .....|++ .++ |.+..+++.+..|+-.+.+
T Consensus 178 ~~~~i~i~~gas~---~~K~wp~e~~~~l~~~l~~-------~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g------ 241 (319)
T TIGR02193 178 PAPYAVLLHATSR---DDKTWPEERWRELARLLLA-------RGLQIVLPWGNDAEKQRAERIAEALPGAVVLP------ 241 (319)
T ss_pred CCCEEEEEeCCCc---ccCCCCHHHHHHHHHHHHH-------CCCeEEEeCCCHHHHHHHHHHHhhCCCCeecC------
Confidence 5789999985442 3455677666555444321 12334444 333 2244455554444321111
Q ss_pred cccccccCChhhHHHHHHHHHHHhCCCeeeecCCChHHHHHHHHh
Q psy1897 330 AASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELL 374 (473)
Q Consensus 330 ~a~~~~R~s~~~l~~~l~Dl~lLs~cD~~VgT~sSn~~rla~eLr 374 (473)
..++.+ =+.+++.||.+||. .|....||..+-
T Consensus 242 ---------~~sL~e---l~ali~~a~l~I~~-DSgp~HlAaa~g 273 (319)
T TIGR02193 242 ---------KMSLAE---VAALLAGADAVVGV-DTGLTHLAAALD 273 (319)
T ss_pred ---------CCCHHH---HHHHHHcCCEEEeC-CChHHHHHHHcC
Confidence 112222 25689999999999 899999999883
No 64
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=39.33 E-value=1.4e+02 Score=27.51 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=47.5
Q ss_pred CccEEEEeCCChHHHHH----HHhhCCCcEEEcCCcccccccccccCChhhHHHHHHHHHHHhCCCeeeecCCChHH-HH
Q psy1897 295 TERKVYVATDEKGVIME----IRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQIC-RI 369 (473)
Q Consensus 295 ~~~~IfLATDdp~v~~e----~k~~yp~~~~~~~~~~s~~a~~~~R~s~~~l~~~l~Dl~lLs~cD~~VgT~sSn~~-rl 369 (473)
...+|||....+++.++ +++.||+..+.+....... . +. ...+++..--++.|+++..+++=-- .+
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~----~----~~-~~~i~~~I~~~~pdiv~vglG~PkQE~~ 115 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFG----P----EE-EEEIIERINASGADILFVGLGAPKQELW 115 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCC----h----hh-HHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 36789999999999987 5568999998762211111 0 11 1226666667789999888777543 34
Q ss_pred HHHHhccC
Q psy1897 370 AYELLNTD 377 (473)
Q Consensus 370 a~eLr~~~ 377 (473)
+...++..
T Consensus 116 ~~~~~~~l 123 (171)
T cd06533 116 IARHKDRL 123 (171)
T ss_pred HHHHHHHC
Confidence 44555444
No 65
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=38.92 E-value=4.3e+02 Score=26.71 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=55.8
Q ss_pred HHHhCCCCCeeeEEEeeCCCCCCCCCcChhhHHHHHHHHHHHHhcccCCCccEEEEeC-C--ChHHHHHHHhhCCCcEEE
Q psy1897 246 AQQIGFSHPVVGVHIRRTDKGSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVAT-D--EKGVIMEIRQKYPAYTIL 322 (473)
Q Consensus 246 ~~~l~~~~piVGVHIRrgDK~~E~~~~~~~~Ym~~v~~~~~~~~~~~~~~~~~IfLAT-D--dp~v~~e~k~~yp~~~~~ 322 (473)
..+.+...|.|+||. |-.. ..+.-|.+.|.+.++...+ ...+-|++.+ + |.+..+++....+.-.++
T Consensus 174 l~~~~~~~~~i~i~p--~a~~-~~K~Wp~e~~~~l~~~l~~-------~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~ 243 (344)
T TIGR02201 174 LDEAGVGQNYIVIQP--TSRW-FFKCWDNDRFSALIDALHA-------RGYEVVLTSGPDKDELAMVNEIAQGCQTPRVT 243 (344)
T ss_pred HHhcCCCCCEEEEeC--CCCc-cccCCCHHHHHHHHHHHHh-------CCCeEEEecCCCHHHHHHHHHHHhhCCCCccc
Confidence 333334578999995 2222 3556677666666655431 1233344433 1 334556665443311111
Q ss_pred cCCcccccccccccCChhhHHHHHHHHHHHhCCCeeeecCCChHHHHHHHHh
Q psy1897 323 GDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELL 374 (473)
Q Consensus 323 ~~~~~s~~a~~~~R~s~~~l~~~l~Dl~lLs~cD~~VgT~sSn~~rla~eLr 374 (473)
. +..+ .++. -=+.+++.||.+||. .|..-.||..+-
T Consensus 244 ~---------l~g~---~sL~---el~ali~~a~l~Vs~-DSGp~HlAaA~g 279 (344)
T TIGR02201 244 S---------LAGK---LTLP---QLAALIDHARLFIGV-DSVPMHMAAALG 279 (344)
T ss_pred c---------cCCC---CCHH---HHHHHHHhCCEEEec-CCHHHHHHHHcC
Confidence 0 1111 1221 113478899999999 999999999883
No 66
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=38.08 E-value=1.6e+02 Score=30.06 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=57.9
Q ss_pred CCeeeEEEeeCCCCCCCCCcChhhHHHHHHHHHHHHhcccCCCccEEEEeC--CChHHHHHHHhhCCCcEEEcCCccccc
Q psy1897 253 HPVVGVHIRRTDKGSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVAT--DEKGVIMEIRQKYPAYTILGDASTVEA 330 (473)
Q Consensus 253 ~piVGVHIRrgDK~~E~~~~~~~~Ym~~v~~~~~~~~~~~~~~~~~IfLAT--Ddp~v~~e~k~~yp~~~~~~~~~~s~~ 330 (473)
.|+|++|.= --...++--|.+.|.+.++...++ . -.|+|.. ||.++.+++.+.+++...+
T Consensus 175 ~~~i~i~pg--~s~~~~K~wp~e~~~~l~~~l~~~-------~-~~Vvl~g~~~e~e~~~~i~~~~~~~~~l-------- 236 (334)
T COG0859 175 RPYIVINPG--ASRGSAKRWPLEHYAELAELLIAK-------G-YQVVLFGGPDEEERAEEIAKGLPNAVIL-------- 236 (334)
T ss_pred CCeEEEecc--ccccccCCCCHHHHHHHHHHHHHC-------C-CEEEEecChHHHHHHHHHHHhcCCcccc--------
Confidence 688888853 011123346776666666655533 2 5666643 7777778888777644321
Q ss_pred ccccccCChhhHHHHHHH-HHHHhCCCeeeecCCChHHHHHHHHh
Q psy1897 331 ASSDRRYSTAGLLGIITD-LYFLSHSDYLVCTFSSQICRIAYELL 374 (473)
Q Consensus 331 a~~~~R~s~~~l~~~l~D-l~lLs~cD~~VgT~sSn~~rla~eLr 374 (473)
..+ .+ |.| +.+++.||++||. .|+...||+.+-
T Consensus 237 ---~~k---~s----L~e~~~li~~a~l~I~~-DSg~~HlAaA~~ 270 (334)
T COG0859 237 ---AGK---TS----LEELAALIAGADLVIGN-DSGPMHLAAALG 270 (334)
T ss_pred ---CCC---CC----HHHHHHHHhcCCEEEcc-CChHHHHHHHcC
Confidence 111 22 222 2466899999988 999999999983
No 67
>COG1324 CutA Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism]
Probab=37.49 E-value=24 Score=30.14 Aligned_cols=54 Identities=24% Similarity=0.565 Sum_probs=41.9
Q ss_pred HHHHHHHH-----hhhhcccCHHHHHHHHHHHHHhC-CCCC-eeeEEEeeCCCCCCCCCcChhhHHHHHHH
Q psy1897 220 IVWWVGQI-----VKYIFKPNAKVRAMLSHHAQQIG-FSHP-VVGVHIRRTDKGSEAAPHPIHEYMRHVEE 283 (473)
Q Consensus 220 ~~w~~~q~-----~~yl~Rp~~~~~~~I~~~~~~l~-~~~p-iVGVHIRrgDK~~E~~~~~~~~Ym~~v~~ 283 (473)
.+||-|.+ +.-++|-+....++|.++.+++. +.-| ++++-|.+|+. +|+++++.
T Consensus 41 ~Y~W~G~Iee~~E~~liiKT~~~~~~~l~~~ikelHpYevPeIi~i~v~~g~~----------eYL~Wl~~ 101 (104)
T COG1324 41 IYWWEGKIEEDEEVALIIKTTSEKFEELIERIKELHPYEVPEIIALPVDNGLP----------EYLEWLNE 101 (104)
T ss_pred EEEECCeeeecceeEEEEEehHHhHHHHHHHHHHhCCCCCceEEEEEeccCCH----------HHHHHHHH
Confidence 57999987 33478989999999999998875 5556 79999998875 67776653
No 68
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=35.95 E-value=61 Score=26.89 Aligned_cols=62 Identities=10% Similarity=0.127 Sum_probs=32.8
Q ss_pred cccccccccchhhhccCCCC----CCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCccee
Q psy1897 392 WFFAGQRDNIQLAVLDHTPQ----TADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVI 454 (473)
Q Consensus 392 y~~~g~~~~~~~a~~~~~~~----~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~ 454 (473)
|-|.|...-.+.+...++.. ....|.+++|.+++|...-..+=+-.+|.- |+.|..|....-
T Consensus 5 FKydgeI~VL~~~~V~~~~~~kk~G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~-GKYGYV~~~~L~ 70 (89)
T PF14603_consen 5 FKYDGEIRVLYTMMVDPNLKSKKWGGKDLPIKPGEILEVIQFTDDNKVLCRNSE-GKYGYVLRSHLL 70 (89)
T ss_dssp T---S----SS--B--TTS-SS---TTB----TT-B-EEEEESSSSEEEEEETT-TEEEEEEGGGS-
T ss_pred cccCceEEEEEEEEEccCcccccCCcccCCcCCCCEEEEEEeCCCCeEEEeCCC-CceeEEEHHHcc
Confidence 45677777777776666643 357999999999999987777766677876 899999887753
No 69
>KOG3416|consensus
Probab=35.81 E-value=19 Score=31.75 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=18.5
Q ss_pred ccCCCCeEeeccccccceeeeEecCCCeee
Q psy1897 417 ELRVGDEVKPAGNHWDGFSRGTNLRTNRHG 446 (473)
Q Consensus 417 ~l~~GD~i~~~~~~~~G~~~g~n~rt~~~G 446 (473)
.++|||+|...+.+-.=|=.|.-+++|+.|
T Consensus 61 ~~~PGDIirLt~Gy~Si~qg~LtL~~GK~G 90 (134)
T KOG3416|consen 61 LIQPGDIIRLTGGYASIFQGCLTLYVGKGG 90 (134)
T ss_pred ccCCccEEEecccchhhhcCceEEEecCCc
Confidence 589999998875432222234555666555
No 70
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=34.77 E-value=2.6e+02 Score=25.94 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=19.1
Q ss_pred CCccEEEEeCCChHHHHHHHhhCC
Q psy1897 294 VTERKVYVATDEKGVIMEIRQKYP 317 (473)
Q Consensus 294 ~~~~~IfLATDdp~v~~e~k~~yp 317 (473)
.....|+|||||.++.+.++ +|+
T Consensus 38 ~~~d~IvVaTd~~~i~~~~~-~~g 60 (217)
T PF02348_consen 38 KLIDEIVVATDDEEIDDIAE-EYG 60 (217)
T ss_dssp TTTSEEEEEESSHHHHHHHH-HTT
T ss_pred CCCCeEEEeCCCHHHHHHHH-HcC
Confidence 45667999999999999888 565
No 71
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=33.40 E-value=99 Score=29.50 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.1
Q ss_pred HHHHhCCCeeeecCCChHHHHHHHHh
Q psy1897 349 LYFLSHSDYLVCTFSSQICRIAYELL 374 (473)
Q Consensus 349 l~lLs~cD~~VgT~sSn~~rla~eLr 374 (473)
+.+++.||.+||. -|....||..+.
T Consensus 178 ~ali~~a~~~I~~-Dtg~~HlA~a~~ 202 (247)
T PF01075_consen 178 AALISRADLVIGN-DTGPMHLAAALG 202 (247)
T ss_dssp HHHHHTSSEEEEE-SSHHHHHHHHTT
T ss_pred HHHHhcCCEEEec-CChHHHHHHHHh
Confidence 4588999999999 899999999984
No 72
>KOG2264|consensus
Probab=29.93 E-value=2.1e+02 Score=31.67 Aligned_cols=72 Identities=22% Similarity=0.295 Sum_probs=50.2
Q ss_pred hhhcHHHHHHHHHHHHHHHhhcC---hhhHHHHHHhHHHHHHHHHHHHHHHhcccChhhHHHHHhHHHHHHHHHHHhhhc
Q psy1897 23 ILNNIEEFWFYVQSEVRKLKKSN---AVDVDKILDLTSQFKRSLMTDMEELGTLAGGDTLAERQNRRLGELVQARLRHIQ 99 (473)
Q Consensus 23 ~~~~~~e~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~d~~~l~~~d~~~~w~~~~~~~L~~~vq~~i~~~Q 99 (473)
+..+...|...++-||.+|..+- ++.|..+-...+++++++......|..+.|.-+ -++..++.+-..|
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ie--------qaq~~~~El~~~n 151 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIE--------QAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH--------HHHHHHHHHHhhc
Confidence 34455556777788888876653 367788888889999999888877777765332 3455566776777
Q ss_pred CCC
Q psy1897 100 NPR 102 (473)
Q Consensus 100 NP~ 102 (473)
||+
T Consensus 152 ~pk 154 (907)
T KOG2264|consen 152 NPK 154 (907)
T ss_pred CCc
Confidence 774
No 73
>KOG2391|consensus
Probab=29.38 E-value=1.7e+02 Score=30.35 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=33.9
Q ss_pred chhHHHHHhhhhcHHHHHHHHHHHHHHHhhcCh---hhHHHHHHhHHHHHHHHHHHHHHHh
Q psy1897 14 KPYASKHRHILNNIEEFWFYVQSEVRKLKKSNA---VDVDKILDLTSQFKRSLMTDMEELG 71 (473)
Q Consensus 14 ~~~e~l~r~~~~~~~e~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~l~~d~~~l~ 71 (473)
.-.|++|+|.+..+..+|-.. +.|++-....+ +.+..++..++++..+|-.+++-|.
T Consensus 214 a~~eklR~r~eeeme~~~aeq-~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~ 273 (365)
T KOG2391|consen 214 AVREKLRRRREEEMERLQAEQ-ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILK 273 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 456889998887777766433 22222111111 4566666677777777777776664
No 74
>KOG2776|consensus
Probab=29.21 E-value=36 Score=35.32 Aligned_cols=45 Identities=33% Similarity=0.398 Sum_probs=33.2
Q ss_pred CCCCCCeeecccccccccccccchhhhccCCCCCCC-ccccCCCCeEeec-cccccceee
Q psy1897 379 RDASLNFKSLDDIWFFAGQRDNIQLAVLDHTPQTAD-QIELRVGDEVKPA-GNHWDGFSR 436 (473)
Q Consensus 379 ~d~~~~~~SLD~~y~~~g~~~~~~~a~~~~~~~~~~-el~l~~GD~i~~~-~~~~~G~~~ 436 (473)
+.|.-..+|+|+- ++.+.|..++ +..|++||+|.+. |-|-|||.-
T Consensus 76 GIAfPT~Isvnnc-------------v~h~sPlksd~~~~Lk~GDvVKIdLG~HiDGfiA 122 (398)
T KOG2776|consen 76 GIAFPTSISVNNC-------------VCHFSPLKSDADYTLKEGDVVKIDLGVHIDGFIA 122 (398)
T ss_pred cccccceecccce-------------eeccCcCCCCCcccccCCCEEEEEeeeeecccee
Confidence 5566677888863 3334555444 8899999999887 899999953
No 75
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=28.16 E-value=78 Score=22.79 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=27.9
Q ss_pred ccCCCCeEeeccccccc-eeeeEecCCCeeeeeeCccee
Q psy1897 417 ELRVGDEVKPAGNHWDG-FSRGTNLRTNRHGLYPSFKVI 454 (473)
Q Consensus 417 ~l~~GD~i~~~~~~~~G-~~~g~n~rt~~~Gl~P~~~v~ 454 (473)
.|..|+.|.+.+...++ |++-.. ..|..|.-++.+++
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~-~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRT-YDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEE-ETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEEC-cCCcEEEEEccccC
Confidence 57899999999877776 988744 34668998887764
No 76
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=28.10 E-value=1.5e+02 Score=28.62 Aligned_cols=107 Identities=23% Similarity=0.167 Sum_probs=68.8
Q ss_pred HHHhhhhcHHHHHHHHHHHHHHHhhcChhhHHHHHHhHHHHHHHHHHHHHHHhcccChhhHHHHHhHHHHHHHHHHHhhh
Q psy1897 19 KHRHILNNIEEFWFYVQSEVRKLKKSNAVDVDKILDLTSQFKRSLMTDMEELGTLAGGDTLAERQNRRLGELVQARLRHI 98 (473)
Q Consensus 19 l~r~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~d~~~~w~~~~~~~L~~~vq~~i~~~ 98 (473)
+.+|+.|+++-+.-+++.|.++.... +..+++.+.....||..--+.|+.- +.+.|+-. .+.+.+...|...
T Consensus 26 i~HRVKNnLqiIsSll~lq~r~~~~~----~~~~~~~~~~Ri~sla~~He~L~~s-~~~~~~~~---~~~~~L~~~l~~~ 97 (221)
T COG3920 26 IHHRVKNNLQIISSLLRLQARKFEDE----VLEALRESQNRIQSLALIHELLYKS-GDDTWDFA---SYLELLASNLFPS 97 (221)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhcCCH----HHHHHHHHHHHHHHHHHHHHHHhcC-CcceEcHH---HHHHHHHHHHHHh
Confidence 45678888888888888887664442 7778888888899999989999976 66677764 3444444455443
Q ss_pred cCCCCCCCCCE-------EEEEecCCCchhHHHHHHHH-HHHHHHH
Q psy1897 99 QNPRDCKTARK-------VSCQINWACGFGCQLHHVTY-CLIIAYA 136 (473)
Q Consensus 99 QNP~dC~~aK~-------Lv~~~~~~~GfG~~lh~l~~-~l~~A~~ 136 (473)
.. ...... +.+.++..-.+|=.+|-++. ++-+|..
T Consensus 98 ~~---~~~~~~~~~~~~~~~l~~d~A~~Lgliv~EL~tNa~Khaf~ 140 (221)
T COG3920 98 YG---GKDIRLILDSGPNVFLDPDTAVPLGLIVHELVTNALKHAFL 140 (221)
T ss_pred cC---CCCceEEEecCCceEECchhhHHHHHHHHHHHHHHHHhcCC
Confidence 21 111111 33333345677778887654 5666665
No 77
>PRK05338 rplS 50S ribosomal protein L19; Provisional
Probab=27.75 E-value=45 Score=29.13 Aligned_cols=52 Identities=25% Similarity=0.280 Sum_probs=37.5
Q ss_pred ccccCCCCeEeeccccccc------eeeeEecCCCeeeeeeCcceeecccC----CCCCCCC
Q psy1897 415 QIELRVGDEVKPAGNHWDG------FSRGTNLRTNRHGLYPSFKVISRVET----YKFPTYP 466 (473)
Q Consensus 415 el~l~~GD~i~~~~~~~~G------~~~g~n~rt~~~Gl~P~~~v~~~~~~----~~~p~~~ 466 (473)
=-++++||.|.|.-..-+| .+.|+.......|+--++-|+.+..- --||.|+
T Consensus 16 ~p~f~~GD~V~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~S 77 (116)
T PRK05338 16 IPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKISYGVGVERTFPLHS 77 (116)
T ss_pred CCCcCCCCEEEEEEEEccCCceEeccEEEEEEEEeCCCCCceEEEEEcccCccEEEEecCCC
Confidence 3478999999997554444 47887777778888888888877652 3456665
No 78
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=27.24 E-value=3.1e+02 Score=21.59 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=43.7
Q ss_pred HHHhhhhcHHHHHHHHHHHHHHHhhcChhhHHHHHHhHHHHHHHHHHHHHHHhcccChhh
Q psy1897 19 KHRHILNNIEEFWFYVQSEVRKLKKSNAVDVDKILDLTSQFKRSLMTDMEELGTLAGGDT 78 (473)
Q Consensus 19 l~r~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~d~~~~ 78 (473)
+.+|+.|+++-+--+++-|..+.. ++.....+..+.....++..==+.|++-++...
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~---~~e~~~~L~~~~~RI~aia~vh~~L~~~~~~~~ 58 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSE---DPEAREALEDAQNRIQAIALVHEQLYQSEDLSE 58 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 578999999999999999976643 334566777778888888888888888775444
No 79
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=26.84 E-value=24 Score=35.38 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=40.4
Q ss_pred hCCCeeeecCCChHH-----HHHHHHhccCC-CCC-CCCeeecccccccccccccchhhhccCC
Q psy1897 353 SHSDYLVCTFSSQIC-----RIAYELLNTDH-RDA-SLNFKSLDDIWFFAGQRDNIQLAVLDHT 409 (473)
Q Consensus 353 s~cD~~VgT~sSn~~-----rla~eLr~~~~-~d~-~~~~~SLD~~y~~~g~~~~~~~a~~~~~ 409 (473)
++||.|||+++.+.= .++.+|-...- +|- .....|+++.+.++.......+||....
T Consensus 4 ~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~ 67 (273)
T PF12745_consen 4 SRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQK 67 (273)
T ss_pred CcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecc
Confidence 689999999876553 45555644432 233 2234599999999999999999988774
No 80
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=26.73 E-value=1.8e+02 Score=22.83 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=21.3
Q ss_pred chhHHHHHhhhhcHHHHHHHHHHHHHHHhh
Q psy1897 14 KPYASKHRHILNNIEEFWFYVQSEVRKLKK 43 (473)
Q Consensus 14 ~~~e~l~r~~~~~~~e~~~~~~~~~~~l~~ 43 (473)
.+=+.+|++|.+.+.+++..+..-.+.++.
T Consensus 22 ~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 22 KSGKETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678888888888888877666555444
No 81
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.31 E-value=1.2e+02 Score=27.03 Aligned_cols=38 Identities=32% Similarity=0.549 Sum_probs=26.2
Q ss_pred EEeeCCCCCCCCCcChhhHHHHHHHHHHHHhcccCCCccEEEEeCCChHHHHHHH
Q psy1897 259 HIRRTDKGSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEKGVIMEIR 313 (473)
Q Consensus 259 HIRrgDK~~E~~~~~~~~Ym~~v~~~~~~~~~~~~~~~~~IfLATDdp~v~~e~k 313 (473)
-+||||| ++-.+.+.+|+. ..+++.|+|..++-++...
T Consensus 16 ~~RRGD~---------eeEve~ireyi~--------sA~r~vV~t~N~~K~~ain 53 (156)
T COG4019 16 NIRRGDK---------EEEVEKIREYIV--------SAKRIVVATNNQKKFKAIN 53 (156)
T ss_pred cccccch---------HHHHHHHHHHHh--------ccceEEEecCCHHHHHHHH
Confidence 4799999 344455555553 3568889999988776554
No 82
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=26.25 E-value=4.7e+02 Score=27.29 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcccChhhHHHHHhHHHHHHHHHHHhhhcCC
Q psy1897 62 SLMTDMEELGTLAGGDTLAERQNRRLGELVQARLRHIQNP 101 (473)
Q Consensus 62 ~l~~d~~~l~~~d~~~~w~~~~~~~L~~~vq~~i~~~QNP 101 (473)
.|...+..|... +.++|+-.|...|-+++.++|+..+|.
T Consensus 111 ~l~~~~~~l~~~-~~~dW~LaEaeyLlrlA~qrL~l~~Dv 149 (372)
T PF04375_consen 111 ELQQQLAALSQR-SRDDWLLAEAEYLLRLANQRLQLEGDV 149 (372)
T ss_pred HHHHHHHHHhcC-ChHhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 344444444444 678999999999999999999988875
No 83
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=26.17 E-value=2.5e+02 Score=25.86 Aligned_cols=20 Identities=15% Similarity=0.046 Sum_probs=14.4
Q ss_pred HHHHhhhhcHHHHHHHHHHH
Q psy1897 18 SKHRHILNNIEEFWFYVQSE 37 (473)
Q Consensus 18 ~l~r~~~~~~~e~~~~~~~~ 37 (473)
.|+++++...+|+.+.++..
T Consensus 26 ~lq~~~e~k~~~l~e~l~~~ 45 (175)
T COG4741 26 SLQGKVESKARELEETLQKA 45 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37777888888887777443
No 84
>PHA01750 hypothetical protein
Probab=24.68 E-value=2.1e+02 Score=22.43 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=9.4
Q ss_pred HHhhhhcHHHHHHHHHHHHHHHhh
Q psy1897 20 HRHILNNIEEFWFYVQSEVRKLKK 43 (473)
Q Consensus 20 ~r~~~~~~~e~~~~~~~~~~~l~~ 43 (473)
+..+.|.++|+ ++.||..|..
T Consensus 29 Kq~lkdAvkeI---V~~ELdNL~~ 49 (75)
T PHA01750 29 KQALKDAVKEI---VNSELDNLKT 49 (75)
T ss_pred HHHHHHHHHHH---HHHHHHHHHH
Confidence 33444444443 3455554444
No 85
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=24.20 E-value=4.5e+02 Score=25.89 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=42.0
Q ss_pred HHHHhhhhcHHHHHHHHHHHHHHHhhcChhhHHHHHHhHHHHHHHHHHHHHHHhcccChhhHHH------HHhHHHHHHH
Q psy1897 18 SKHRHILNNIEEFWFYVQSEVRKLKKSNAVDVDKILDLTSQFKRSLMTDMEELGTLAGGDTLAE------RQNRRLGELV 91 (473)
Q Consensus 18 ~l~r~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~d~~~~w~~------~~~~~L~~~v 91 (473)
-|+|++...+.+. ..|..|+.++.+..-.-|++=+..++-.++.|..| +++|. +.+. .++.+=-+.+
T Consensus 161 ~l~~eLqkr~~~v-~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~----g~Ld~--~~q~~~~ae~seLq~r~~~l 233 (289)
T COG4985 161 PLERELQKRLLEV-ETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLN----GQLDD--EFQQHYVAEKSELQKRLAQL 233 (289)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccccH--HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 45667777777666556666666666666665443 23331 2222 2333334455
Q ss_pred HHHHhhhcCCCC
Q psy1897 92 QARLRHIQNPRD 103 (473)
Q Consensus 92 q~~i~~~QNP~d 103 (473)
|..|+.+|-|.+
T Consensus 234 ~~~L~~L~~e~~ 245 (289)
T COG4985 234 QTELDALRAELE 245 (289)
T ss_pred HHHHHHHhhhhh
Confidence 666777776654
No 86
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=23.55 E-value=3.7e+02 Score=26.87 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=22.0
Q ss_pred HHHHhCCCeeeecCCChHHHHHHHHh
Q psy1897 349 LYFLSHSDYLVCTFSSQICRIAYELL 374 (473)
Q Consensus 349 l~lLs~cD~~VgT~sSn~~rla~eLr 374 (473)
+.++++||.+||. .|....||..+.
T Consensus 248 aali~~a~l~I~n-DSGp~HlA~A~g 272 (322)
T PRK10964 248 ARVLAGAKAVVSV-DTGLSHLTAALD 272 (322)
T ss_pred HHHHHhCCEEEec-CCcHHHHHHHhC
Confidence 3478899999999 899999999984
No 87
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=23.26 E-value=4.6e+02 Score=23.95 Aligned_cols=64 Identities=6% Similarity=0.136 Sum_probs=41.7
Q ss_pred cCCCCCchhHHHHHhhhhcHHHHHHHHHHHHHHHhhcChhhHHHHHH---hHHHHHHHHHHHHHHHhc
Q psy1897 8 LDLKTNKPYASKHRHILNNIEEFWFYVQSEVRKLKKSNAVDVDKILD---LTSQFKRSLMTDMEELGT 72 (473)
Q Consensus 8 ~~~~~~~~~e~l~r~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~l~~d~~~l~~ 72 (473)
+...|.+..|. |..+...++++-+-.+..++.+.+...+.+..... ..++....+..++++|.+
T Consensus 81 ~v~iP~~T~E~-R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~ 147 (165)
T PF01765_consen 81 RVPIPPPTEER-RKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTD 147 (165)
T ss_dssp EEE--SSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHH
Confidence 34456666665 77777888888888888888777766656665554 466666667777666654
No 88
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=23.01 E-value=4.4e+02 Score=26.21 Aligned_cols=61 Identities=21% Similarity=0.331 Sum_probs=39.1
Q ss_pred CccEEEEeCCChHHHHHHH----hhCCCcEEEcCCcccccccccccCChhhHHHHHHHHHHHhCCCeeeecCCC
Q psy1897 295 TERKVYVATDEKGVIMEIR----QKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSS 364 (473)
Q Consensus 295 ~~~~IfLATDdp~v~~e~k----~~yp~~~~~~~~~~s~~a~~~~R~s~~~l~~~l~Dl~lLs~cD~~VgT~sS 364 (473)
...+||+....|.|.+++. ++||+..|.+...-. .... +. ..++.-.-.++.|.+...+++
T Consensus 107 ~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GY----f~~~---e~--~~i~~~I~~s~pdil~VgmG~ 171 (253)
T COG1922 107 EGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGY----FDPE---EE--EAIVERIAASGPDILLVGMGV 171 (253)
T ss_pred cCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCC----CChh---hH--HHHHHHHHhcCCCEEEEeCCC
Confidence 4689999999999998864 589988887643211 1111 11 244555556777876666554
No 89
>KOG3849|consensus
Probab=22.79 E-value=54 Score=32.89 Aligned_cols=38 Identities=37% Similarity=0.274 Sum_probs=29.4
Q ss_pred CCEEEEEecCCCchhHHHHHHHHHHHHHHHcCcEEEEec
Q psy1897 107 ARKVSCQINWACGFGCQLHHVTYCLIIAYATNRTLVLDS 145 (473)
Q Consensus 107 aK~Lv~~~~~~~GfG~~lh~l~~~l~~A~~t~Rtliid~ 145 (473)
+-+|++-- --.-||.|..|.+..|..|...||||++-.
T Consensus 29 ~GYl~yCP-CMGRFGNQaDhFLGsLAFAKaLnRTL~lPp 66 (386)
T KOG3849|consen 29 AGYLLYCP-CMGRFGNQADHFLGSLAFAKALNRTLVLPP 66 (386)
T ss_pred CccEEEcc-ccccccchHHHHHHHHHHHHHhcccccCCc
Confidence 34555431 123699999999999999999999999864
No 90
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=22.73 E-value=46 Score=31.22 Aligned_cols=40 Identities=30% Similarity=0.483 Sum_probs=24.5
Q ss_pred CCccccCCCCeEeeccccc-cceeeeEecCCCeeeeeeCcce
Q psy1897 413 ADQIELRVGDEVKPAGNHW-DGFSRGTNLRTNRHGLYPSFKV 453 (473)
Q Consensus 413 ~~el~l~~GD~i~~~~~~~-~G~~~g~n~rt~~~Gl~P~~~v 453 (473)
.++..-.-|=++++...|. .||.-|+.+ ||++|+|++|-.
T Consensus 52 ~~~~~~~~G~V~e~LSEh~c~G~leGY~L-tGrhglf~sYEA 92 (179)
T PF03894_consen 52 DDEHLAPGGRVMEVLSEHQCQGWLEGYLL-TGRHGLFASYEA 92 (179)
T ss_dssp T-TTEESS-SEEE-S-HHHHHHHHHHHHH-TT-EEEEEEEGG
T ss_pred chhhcccCCeeeeecCHHHHHHHHHHHHh-cCCcccccccch
Confidence 3455555588888886554 677776654 699999999863
No 91
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.44 E-value=65 Score=27.00 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.6
Q ss_pred CCCccccCCCCeEeeccccccceee
Q psy1897 412 TADQIELRVGDEVKPAGNHWDGFSR 436 (473)
Q Consensus 412 ~~~el~l~~GD~i~~~~~~~~G~~~ 436 (473)
+.-|-++++||++.|..+..++|+-
T Consensus 27 D~SEShf~~g~vlrV~r~Ed~~~fc 51 (106)
T COG3097 27 DKSESHFKPGDVLRVGRFEDDRYFC 51 (106)
T ss_pred ccchhcCCCCCEEEEEEecCCcEEE
Confidence 3458899999999999999999964
No 92
>TIGR01024 rplS_bact ribosomal protein L19, bacterial type. This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs.
Probab=21.20 E-value=61 Score=28.19 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=35.8
Q ss_pred cccCCCCeEeeccccccc------eeeeEecCCCeeeeeeCcceeecccC----CCCCCCC
Q psy1897 416 IELRVGDEVKPAGNHWDG------FSRGTNLRTNRHGLYPSFKVISRVET----YKFPTYP 466 (473)
Q Consensus 416 l~l~~GD~i~~~~~~~~G------~~~g~n~rt~~~Gl~P~~~v~~~~~~----~~~p~~~ 466 (473)
-++++||.|.|.-..-.| -+.|........|+--++.|+.+... --||.|+
T Consensus 17 p~f~~GD~v~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvR~i~~gvGVEr~fpl~S 77 (113)
T TIGR01024 17 PDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETFTVRKISYGVGVERIFPLHS 77 (113)
T ss_pred CccCCCCEEEEEEEEccCCceEcccEEEEEEEEeCCCCceEEEEEEeccCccEEEEEEcCC
Confidence 369999999987444333 47777776677788888888887653 3455554
No 93
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=21.06 E-value=77 Score=31.98 Aligned_cols=36 Identities=33% Similarity=0.483 Sum_probs=24.8
Q ss_pred CCCCCCCccccCCCCeEeec-cccccceeeeEecCCCe
Q psy1897 408 HTPQTADQIELRVGDEVKPA-GNHWDGFSRGTNLRTNR 444 (473)
Q Consensus 408 ~~~~~~~el~l~~GD~i~~~-~~~~~G~~~g~n~rt~~ 444 (473)
|.|...++-.|+.||+|.+. |-++|||.- -.-||--
T Consensus 65 ~~p~~~d~~~l~~GDvV~iD~G~~~dGY~a-D~arT~~ 101 (295)
T TIGR00501 65 FTPKAGDKTVFKDGDVVKLDLGAHVDGYIA-DTAITVD 101 (295)
T ss_pred CCCCCCcCccCCCCCEEEEEEeEEECCEEE-EEEEEEE
Confidence 45554556689999998887 779999943 2335533
Done!